FF:3632-171A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005999 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008915;DRR009789;DRZ001214;DRZ002597;DRZ012564;DRZ013947 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235,CL:0000864,CL:0002476 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000101,FF:0000103,FF:0000001,FF:0200021 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=pool2 | |||
|expression_enrichment_score=chr7:148452314..148452329,-!p1@Irf7!2.32!1353.78!Irf7;;chr2:173044380..173044432,-!p1@Zbp1!2.21!373.12!Zbp1;;chr2:90922554..90922575,+!p4@Sfpi1!2.07!207.77!Sfpi1;;chr2:90936901..90936945,+!p1@Sfpi1!1.94!428.05!Sfpi1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.91!100.62!Zbtb11;;chr2:173044357..173044377,-!p2@Zbp1!1.87!102.25!Zbp1;;chr2:90936947..90936977,+!p2@Sfpi1!1.77!111.50!Sfpi1;;chr2:90936978..90937023,+!p3@Sfpi1!1.72!95.18!Sfpi1;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.63!41.34!Sp140;;chr2:90922519..90922544,+!p6@Sfpi1!1.61!43.51!Sfpi1;;chr11:16908650..16908690,-!p1@Plek!1.55!203.96!Plek;;chr6:29476690..29476724,+!p1@Irf5!1.50!135.98!Irf5;;chr5:53981592..53981616,+!p3@Rbpj!1.50!56.57!Rbpj;;chr1:193007123..193007139,-!p1@Atf3!1.46!150.12!Atf3;;chr8:87225329..87225396,+!p1@Lyl1!1.45!98.99!Lyl1;;chr8:123260252..123260264,+!p1@Irf8!1.36!150.12!Irf8;;chr7:87170879..87170914,+!p2@Zfp710!1.36!50.04!Zfp710;;chr1:52176315..52176343,+!p1@Stat1!1.32!277.39!Stat1;;chr2:166885917..166885930,-!p9@Znfx1!1.31!19.58!Znfx1;;chr11:11586218..11586285,+!p1@Ikzf1!1.27!55.48!Ikzf1;;chrX:7339938..7339963,+!p1@Tfe3!1.25!84.31!Tfe3;;chr7:20408047..20408125,-!p1@Bcl3!1.24!182.21!Bcl3;;chr6:97757008..97757061,+!p1@Mitf!1.23!67.44!Mitf;;chr7:25917492..25917512,-!p1@Pou2f2!1.23!27.20!Pou2f2;;chr16:92826249..92826325,-!p1@Runx1!1.22!38.07!Runx1;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!1.18!16.86!Ncoa4;;chr6:145814003..145814056,-!p1@Bhlhe41!1.16!38.62!Bhlhe41;;chr2:166888107..166888224,-!p1@Znfx1!1.15!187.65!Znfx1;;chrX:7341077..7341091,+!p5@Tfe3!1.15!22.30!Tfe3;;chr2:160192793..160192809,-!p1@Mafb!1.14!191.45!Mafb;;chr11:53583544..53583559,+!p1@Irf1!1.13!205.60!Irf1;;chr6:39068181..39068206,-!p3@Parp12!1.13!25.56!Parp12;;chr2:166885947..166885956,-!p13@Znfx1!1.13!12.51!Znfx1;;chr2:90936886..90936898,+!p5@Sfpi1!1.10!13.60!Sfpi1;;chr16:3744162..3744180,+!p2@Zfp263!1.09!31.00!Zfp263;;chr6:39068163..39068176,-!p2@Parp12!1.08!20.67!Parp12;;chr10:127707602..127707633,+!p1@Stat2!1.07!96.27!Stat2;;chr2:91034924..91034946,-!p2@Nr1h3!1.06!13.05!Nr1h3;;chr2:167514456..167514473,+!p1@Cebpb!1.05!455.79!Cebpb;;chr2:44968512..44968530,-!p1@Zeb2!1.05!226.26!Zeb2;;chr2:166888058..166888105,-!p2@Znfx1!1.05!33.18!Znfx1;;chr6:145813905..145813932,-!p2@Bhlhe41!1.03!18.49!Bhlhe41;;chr16:3744192..3744206,+!p4@Zfp263!1.03!12.51!Zfp263;;chr7:20214704..20214800,-!p1@Relb!1.02!31.55!Relb;;chr6:29476741..29476752,+!p4@Irf5!1.02!10.33!Irf5;;chr7:26067619..26067702,+!p2@Cic!1.01!52.76!Cic;;chr17:71202822..71202877,-!p3@Tgif1!1.01!27.20!Tgif1;;chr4:124805092..124805135,-!p2@Zc3h12a!1.00!38.62!Zc3h12a;;chr11:100683839..100683890,-!p2@Stat5b!1.00!21.21!Stat5b;;chr2:91035197..91035237,-!p1@Nr1h3!1.00!19.04!Nr1h3;;chr19:46379199..46379301,+!p1@Nfkb2!0.99!51.67!Nfkb2;;chr1:87546583..87546595,+!p1@Sp100!0.99!12.51!Sp100;;chr6:53523358..53523388,+!p1@Creb5!0.97!101.71!Creb5;;chr5:53981578..53981590,+!p4@Rbpj!0.94!9.79!Rbpj;;chr7:25917459..25917474,-!p2@Pou2f2!0.94!7.61!Pou2f2;;chr4:53792566..53792578,+!p1@Tal2!0.94!7.61!Tal2;;chr8:118231705..118231722,-!p3@Maf!0.91!59.29!Maf;;chr8:87225670..87225697,+!p2@Lyl1!0.91!21.76!Lyl1;;chr15:50721515..50721540,-!p3@Trps1!0.91!21.76!Trps1;;chr6:98978868..98978918,-!p6@Foxp1!0.91!12.51!Foxp1;;chr16:92697560..92697592,-!p2@Runx1!0.90!45.69!Runx1;;chr9:32348943..32349001,-!p1@Fli1!0.89!58.20!Fli1;;chr1:87546602..87546617,+!p2@Sp100!0.89!8.16!Sp100;;chr1:186556410..186556424,-!p1@Hlx!0.88!21.76!Hlx;;chr6:29479277..29479296,+!p2@Irf5!0.88!6.53!Irf5;;chr16:15887371..15887385,+!p1@Cebpd!0.87!228.98!Cebpd;;chr13:37870307..37870337,+!p5@Rreb1!0.87!15.23!Rreb1;;chr12:78063057..78063070,-!p3@Max!0.87!14.14!Max;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.84!45.14!Hmga1;;chr8:47825203..47825225,+!p3@Irf2!0.84!8.16!Irf2;;chr4:124805061..124805087,-!p1@Zc3h12a!0.83!19.04!Zc3h12a;;chr7:31206743..31206761,+!p1@Nfkbid!0.83!8.16!Nfkbid;;chr6:39068210..39068251,-!p1@Parp12!0.82!27.74!Parp12;;chr12:87027598..87027652,+!p1@Batf!0.82!13.60!Batf;;chr17:45692676..45692695,+!p2@Nfkbie!0.82!11.97!Nfkbie;;chr1:52176378..52176401,+!p3@Stat1!0.81!17.40!Stat1;;chrX:7339915..7339935,+!p4@Tfe3!0.81!13.05!Tfe3;;chr8:47825166..47825178,+!p2@Irf2!0.81!8.70!Irf2;;chr5:104121453..104121479,+!p4@Aff1!0.80!26.11!Aff1;;chr15:103170516..103170531,-!p2@Zfp385a!0.79!13.05!Zfp385a;;chr12:56593574..56593592,-!p1@Nfkbia!0.78!283.37!Nfkbia;;chr2:168415815..168415872,-!p1@Nfatc2!0.78!29.91!Nfatc2;;chr15:50721544..50721558,-!p5@Trps1!0.78!11.97!Trps1;;chr6:145813964..145813994,-!p3@Bhlhe41!0.78!6.53!Bhlhe41;;chr16:55838757..55838774,-!p2@Nfkbiz!0.78!5.98!Nfkbiz;;chr17:84587279..84587294,-!p1@Zfp36l2!0.77!567.29!Zfp36l2;;chr8:87502608..87502623,-!p1@Junb!0.77!87.02!Junb;;chr14:79915425..79915501,+!p1@Elf1!0.77!47.32!Elf1;;chr1:52176406..52176433,+!p2@Stat1!0.77!13.05!Stat1;;chr17:84586544..84586592,-!p3@Zfp36l2!0.77!7.07!Zfp36l2;;chr17:45692642..45692663,+!p1@Nfkbie!0.76!16.32!Nfkbie;;chr11:120491440..120491474,-!p3@Mafg!0.75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| |expression_enrichment_score=chr7:148452314..148452329,-!p1@Irf7!2.32!1353.78!Irf7;;chr2:173044380..173044432,-!p1@Zbp1!2.21!373.12!Zbp1;;chr2:90922554..90922575,+!p4@Sfpi1!2.07!207.77!Sfpi1;;chr2:90936901..90936945,+!p1@Sfpi1!1.94!428.05!Sfpi1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.91!100.62!Zbtb11;;chr2:173044357..173044377,-!p2@Zbp1!1.87!102.25!Zbp1;;chr2:90936947..90936977,+!p2@Sfpi1!1.77!111.50!Sfpi1;;chr2:90936978..90937023,+!p3@Sfpi1!1.72!95.18!Sfpi1;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.63!41.34!Sp140;;chr2:90922519..90922544,+!p6@Sfpi1!1.61!43.51!Sfpi1;;chr11:16908650..16908690,-!p1@Plek!1.55!203.96!Plek;;chr6:29476690..29476724,+!p1@Irf5!1.50!135.98!Irf5;;chr5:53981592..53981616,+!p3@Rbpj!1.50!56.57!Rbpj;;chr1:193007123..193007139,-!p1@Atf3!1.46!150.12!Atf3;;chr8:87225329..87225396,+!p1@Lyl1!1.45!98.99!Lyl1;;chr8:123260252..123260264,+!p1@Irf8!1.36!150.12!Irf8;;chr7:87170879..87170914,+!p2@Zfp710!1.36!50.04!Zfp710;;chr1:52176315..52176343,+!p1@Stat1!1.32!277.39!Stat1;;chr2:166885917..166885930,-!p9@Znfx1!1.31!19.58!Znfx1;;chr11:11586218..11586285,+!p1@Ikzf1!1.27!55.48!Ikzf1;;chrX:7339938..7339963,+!p1@Tfe3!1.25!84.31!Tfe3;;chr7:20408047..20408125,-!p1@Bcl3!1.24!182.21!Bcl3;;chr6:97757008..97757061,+!p1@Mitf!1.23!67.44!Mitf;;chr7:25917492..25917512,-!p1@Pou2f2!1.23!27.20!Pou2f2;;chr16:92826249..92826325,-!p1@Runx1!1.22!38.07!Runx1;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!1.18!16.86!Ncoa4;;chr6:145814003..145814056,-!p1@Bhlhe41!1.16!38.62!Bhlhe41;;chr2:166888107..166888224,-!p1@Znfx1!1.15!187.65!Znfx1;;chrX:7341077..7341091,+!p5@Tfe3!1.15!22.30!Tfe3;;chr2:160192793..160192809,-!p1@Mafb!1.14!191.45!Mafb;;chr11:53583544..53583559,+!p1@Irf1!1.13!205.60!Irf1;;chr6:39068181..39068206,-!p3@Parp12!1.13!25.56!Parp12;;chr2:166885947..166885956,-!p13@Znfx1!1.13!12.51!Znfx1;;chr2:90936886..90936898,+!p5@Sfpi1!1.10!13.60!Sfpi1;;chr16:3744162..3744180,+!p2@Zfp263!1.09!31.00!Zfp263;;chr6:39068163..39068176,-!p2@Parp12!1.08!20.67!Parp12;;chr10:127707602..127707633,+!p1@Stat2!1.07!96.27!Stat2;;chr2:91034924..91034946,-!p2@Nr1h3!1.06!13.05!Nr1h3;;chr2:167514456..167514473,+!p1@Cebpb!1.05!455.79!Cebpb;;chr2:44968512..44968530,-!p1@Zeb2!1.05!226.26!Zeb2;;chr2:166888058..166888105,-!p2@Znfx1!1.05!33.18!Znfx1;;chr6:145813905..145813932,-!p2@Bhlhe41!1.03!18.49!Bhlhe41;;chr16:3744192..3744206,+!p4@Zfp263!1.03!12.51!Zfp263;;chr7:20214704..20214800,-!p1@Relb!1.02!31.55!Relb;;chr6:29476741..29476752,+!p4@Irf5!1.02!10.33!Irf5;;chr7:26067619..26067702,+!p2@Cic!1.01!52.76!Cic;;chr17:71202822..71202877,-!p3@Tgif1!1.01!27.20!Tgif1;;chr4:124805092..124805135,-!p2@Zc3h12a!1.00!38.62!Zc3h12a;;chr11:100683839..100683890,-!p2@Stat5b!1.00!21.21!Stat5b;;chr2:91035197..91035237,-!p1@Nr1h3!1.00!19.04!Nr1h3;;chr19:46379199..46379301,+!p1@Nfkb2!0.99!51.67!Nfkb2;;chr1:87546583..87546595,+!p1@Sp100!0.99!12.51!Sp100;;chr6:53523358..53523388,+!p1@Creb5!0.97!101.71!Creb5;;chr5:53981578..53981590,+!p4@Rbpj!0.94!9.79!Rbpj;;chr7:25917459..25917474,-!p2@Pou2f2!0.94!7.61!Pou2f2;;chr4:53792566..53792578,+!p1@Tal2!0.94!7.61!Tal2;;chr8:118231705..118231722,-!p3@Maf!0.91!59.29!Maf;;chr8:87225670..87225697,+!p2@Lyl1!0.91!21.76!Lyl1;;chr15:50721515..50721540,-!p3@Trps1!0.91!21.76!Trps1;;chr6:98978868..98978918,-!p6@Foxp1!0.91!12.51!Foxp1;;chr16:92697560..92697592,-!p2@Runx1!0.90!45.69!Runx1;;chr9:32348943..32349001,-!p1@Fli1!0.89!58.20!Fli1;;chr1:87546602..87546617,+!p2@Sp100!0.89!8.16!Sp100;;chr1:186556410..186556424,-!p1@Hlx!0.88!21.76!Hlx;;chr6:29479277..29479296,+!p2@Irf5!0.88!6.53!Irf5;;chr16:15887371..15887385,+!p1@Cebpd!0.87!228.98!Cebpd;;chr13:37870307..37870337,+!p5@Rreb1!0.87!15.23!Rreb1;;chr12:78063057..78063070,-!p3@Max!0.87!14.14!Max;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!0.84!45.14!Hmga1;;chr8:47825203..47825225,+!p3@Irf2!0.84!8.16!Irf2;;chr4:124805061..124805087,-!p1@Zc3h12a!0.83!19.04!Zc3h12a;;chr7:31206743..31206761,+!p1@Nfkbid!0.83!8.16!Nfkbid;;chr6:39068210..39068251,-!p1@Parp12!0.82!27.74!Parp12;;chr12:87027598..87027652,+!p1@Batf!0.82!13.60!Batf;;chr17:45692676..45692695,+!p2@Nfkbie!0.82!11.97!Nfkbie;;chr1:52176378..52176401,+!p3@Stat1!0.81!17.40!Stat1;;chrX:7339915..7339935,+!p4@Tfe3!0.81!13.05!Tfe3;;chr8:47825166..47825178,+!p2@Irf2!0.81!8.70!Irf2;;chr5:104121453..104121479,+!p4@Aff1!0.80!26.11!Aff1;;chr15:103170516..103170531,-!p2@Zfp385a!0.79!13.05!Zfp385a;;chr12:56593574..56593592,-!p1@Nfkbia!0.78!283.37!Nfkbia;;chr2:168415815..168415872,-!p1@Nfatc2!0.78!29.91!Nfatc2;;chr15:50721544..50721558,-!p5@Trps1!0.78!11.97!Trps1;;chr6:145813964..145813994,-!p3@Bhlhe41!0.78!6.53!Bhlhe41;;chr16:55838757..55838774,-!p2@Nfkbiz!0.78!5.98!Nfkbiz;;chr17:84587279..84587294,-!p1@Zfp36l2!0.77!567.29!Zfp36l2;;chr8:87502608..87502623,-!p1@Junb!0.77!87.02!Junb;;chr14:79915425..79915501,+!p1@Elf1!0.77!47.32!Elf1;;chr1:52176406..52176433,+!p2@Stat1!0.77!13.05!Stat1;;chr17:84586544..84586592,-!p3@Zfp36l2!0.77!7.07!Zfp36l2;;chr17:45692642..45692663,+!p1@Nfkbie!0.76!16.32!Nfkbie;;chr11:120491440..120491474,-!p3@Mafg!0.75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0.88!L3mbtl2;;chr18:82862265..82862325,-!p1@Zfp236!0.04!8.70!Zfp236;;chr7:134169762..134169795,-!p3@Maz!0.04!8.16!Maz;;chr10:119913310..119913366,-!p1@Hmga2!0.04!7.07!Hmga2;;chr3:32409487..32409563,+!p1@Zfp639!0.04!6.53!Zfp639;;chr3:54611674..54611690,-!p2@Rfxap!0.04!6.53!Rfxap;;chr13:67585161..67585205,-!p1@Zfp874b!0.04!4.35!Zfp874b;;chr2:126501274..126501308,-!p2@Gabpb1!0.04!3.26!Gabpb1;;chr13:67274092..67274140,+!p1@Rsl1!0.04!2.72!Rsl1;;chr16:43363190..43363242,+!p2@Zbtb20!0.04!2.18!Zbtb20;;chr1:15795704..15795713,+!p2@Terf1!0.04!1.63!Terf1;;chr11:120494669..120494688,-!p2@Mafg!0.04!1.63!Mafg;;chr13:67229127..67229153,+!p2@Zfp759!0.04!1.09!Zfp759;;chr9:63869729..63869749,-!p4@Smad6!0.04!1.09!Smad6;;chr2:48805633..48805648,+!p5@Mbd5!0.04!1.09!Mbd5;;chr2:181100194..181100205,+!p5@Zgpat!0.04!1.09!Zgpat;;chrX:70587989..70588000,+!p3@Zfp275!0.04!1.09!Zfp275;;chr17:27693746..27693759,+!p6@Hmga1-rs1,p7@Hmga1!0.04!1.09!Hmga1;;chr13:59924319..59924331,-!p5@Zcchc6!0.04!0.54!Zcchc6;;chr15:103170561..103170572,-!p4@Zfp385a!0.04!0.54!Zfp385a;;chr5:110539135..110539159,+!p4@Zfp605!0.04!0.54!Zfp605;;chr4:87679181..87679192,-!p10@Mllt3!0.04!0.54!Mllt3;;chr3:94668075..94668087,+!p6@Pogz!0.04!0.54!Pogz;;chr9:20385868..20385902,+!p3@Zfp846!0.04!0.54!Zfp846;;chr7:5003102..5003113,+!p4@Zfp580!0.04!0.54!Zfp580;;chr8:23970000..23970026,+!p1@Myst3!0.03!50.58!Myst3;;chr13:59924433..59924504,-!p1@Zcchc6!0.03!20.67!Zcchc6;;chr5:77694479..77694574,+!p1@Rest!0.03!20.12!Rest;;chr4:149943647..149943707,+!p2@Rere!0.03!16.86!Rere;;chrX:70587953..70587968,+!p1@Zfp275!0.03!9.79!Zfp275;;chr18:35721834..35721851,+!p2@Matr3!0.03!4.35!Matr3;;chr7:13466514..13466553,+!p1@Zfp128!0.03!3.81!Zfp128;;chr9:69137672..69137702,+!p2@Rora!0.03!3.26!Rora;;chr17:45570455..45570479,-!p2@Cdc5l!0.03!2.72!Cdc5l;;chr16:17531086..17531109,-!p3@Thap7!0.03!2.18!Thap7;;chrX:91368504..91368516,-!p3@Zfx!0.03!1.09!Zfx;;chrX:45947787..45947812,-!p3@Zfp280c!0.03!1.09!Zfp280c;;chr2:37286328..37286341,-!p3@Zbtb6!0.03!1.09!Zbtb6;;chr11:16952347..16952366,-!p2@Plek!0.03!0.54!Plek;;chr5:130175978..130175990,-!p2@Zfp11!0.03!0.54!Zfp11;;chr4:63071779..63071791,-!p3@Akna!0.03!0.54!Akna;;chr5:137043112..137043157,-!p1@Cux1!0.02!87.57!Cux1;;chr18:60720384..60720450,+!p1@Rbm22!0.02!48.95!Rbm22;;chr7:135056024..135056042,+!p1@Myst1!0.02!26.65!Myst1;;chr3:96001503..96001557,-!p1@Bola1!0.02!19.58!Bola1;;chr4:151363059..151363120,-!p1@Thap3!0.02!10.88!Thap3;;chr7:134170310..134170341,-!p5@Maz!0.02!7.61!Maz;;chr2:119698241..119698291,+!p2@Mga!0.02!3.81!Mga;;chr11:59285934..59285962,-!p1@Zfp867!0.02!2.72!Zfp867;;chr10:127984472..127984504,-!p2@Zc3h10!0.02!2.18!Zc3h10;;chr12:78063146..78063159,-!p2@Max!0.02!1.63!Max;;chr4:102792072..102792091,+!p5@Mier1!0.02!1.63!Mier1;;chr7:97591412..97591431,+!p2@Crebzf!0.02!1.63!Crebzf;;chr8:124900562..124900573,+!p3@Zc3h18!0.02!1.63!Zc3h18;;chr11:70501599..70501634,-!p2@Camta2,p2@LOC100048818!0.02!1.09!Camta2;;chr10:119913546..119913583,-!p3@Hmga2!0.02!1.09!Hmga2;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.02!0.54!Ppp1r13l;;chrX:103070746..103070764,-!p5@Atrx!0.02!0.54!Atrx;;chr1:13364153..13364156,-!p5@Ncoa2!0.02!0.54!Ncoa2;;chr6:99471223..99471254,-!p7@Foxp1!0.02!0.54!Foxp1;;chr18:69752912..69752928,+!p9@Tcf4!0.02!0.54!Tcf4;;chr16:55822638..55822669,-!p3@Nfkbiz!0.02!0.54!Nfkbiz;;chr14:65977415..65977426,+!p6@Zfp395!0.02!0.54!Zfp395;;chr12:3806513..3806527,+!p9@Dnmt3a!0.02!0.54!Dnmt3a;;chr8:125897678..125897746,+!p1@Tcf25!0.01!189.28!Tcf25;;chr15:81977668..81977705,+!p1@Srebf2!0.01!70.71!Srebf2;;chr5:108697948..108697999,+!p1@Dr1!0.01!28.28!Dr1;;chr4:118967105..118967123,-!p1@Ybx1!0.01!26.65!Ybx1;;chr6:86475924..86475935,-!p2@Pcbp1!0.01!14.69!Pcbp1;;chr2:28915759..28915807,+!p1@Ttf1!0.01!11.97!Ttf1;;chr11:4604645..4604705,+!p1@Zmat5!0.01!11.42!Zmat5;;chr3:14578609..14578687,+!p1@E2f5!0.01!8.16!E2f5;;chr3:94819136..94819168,-!p2@Zfp687!0.01!3.81!Zfp687;;chr2:181100154..181100181,+!p3@Zgpat!0.01!3.81!Zgpat;;chr13:44826095..44826185,+!p4@Jarid2!0.01!3.81!Jarid2;;chr11:69579472..69579529,+!p1@Zbtb4!0.01!3.81!Zbtb4;;chr7:135020060..135020124,-!p2@Zfp668!0.01!3.26!Zfp668;;chr4:108131994..108132056,+!p2@Zcchc11!0.01!2.18!Zcchc11;;chr4:135842030..135842065,+!p3@Zfp46!0.01!1.63!Zfp46;;chr6:133985971..133985991,+!p6@Etv6!0.01!1.63!Etv6;;chr1:64167550..64167618,-!p4@Klf7!0.01!1.63!Klf7;;chr2:181100223..181100237,+!p4@Zgpat!0.01!1.63!Zgpat;;chrX:7339829..7339855,+!p3@Tfe3!0.01!1.63!Tfe3;;chr6:99471044..99471066,-!p4@Foxp1!0.01!1.09!Foxp1;;chr15:75799598..75799619,+!p3@Zfp707!0.01!1.09!Zfp707;;chr15:75672367..75672384,-!p2@Zc3h3!0.01!1.09!Zc3h3;;chr14:98568532..98568561,-!p4@Dach1!0.01!0.54!Dach1;;chrX:7339674..7339688,+!p6@Tfe3!0.01!0.54!Tfe3;;chr4:133801432..133801448,-!p3@Zfp593!0.01!0.54!Zfp593;;chr3:51144477..51144506,-!p6@Elf2!0.01!0.54!Elf2;;chr3:103772552..103772584,+!p2@Phtf1!0.01!0.54!Phtf1;;chr19:23216132..23216157,+!p3@Klf9!0.01!0.54!Klf9;;chr15:80085678..80085693,+!p2@Atf4!0.01!0.54!Atf4;;chr19:55817590..55817625,+!p11@Tcf7l2!0.01!0.54!Tcf7l2;;chr5:67698263..67698272,+!p3@Slc30a9!0.01!0.54!Slc30a9;;chr5:138187411..138187422,+!p8@Tsc22d4!0.01!0.54!Tsc22d4;;chr5:134741947..134741948,-!p9@Gtf2i!0.01!0.54!Gtf2i;;chr7:148513548..148513560,-!p7@Deaf1!0.01!0.54!Deaf1;;chr5:147760370..147760377,+!p6@Gtf3a!0.01!0.54!Gtf3a;;chr2:34227659..34227674,-!p3@Pbx3!0.01!0.54!Pbx3;;chr2:27532817..27532828,+!p6@Rxra!0.01!0.54!Rxra;;chrX:103070839..103070856,-!p4@Atrx!0.01!0.54!Atrx;;chr7:24993112..24993158,-!p1@Zfp111!0.00!8.70!Zfp111;;chr4:133276801..133276891,-!p3@Arid1a!0.00!8.70!Arid1a;;chr12:86940338..86940357,+!p1@Jdp2!0.00!8.16!Jdp2;;chr1:135557964..135557976,-!p2@Zc3h11a!0.00!7.07!Zc3h11a;;chr10:127707562..127707597,+!p2@Stat2!0.00!3.81!Stat2;;chr5:31754800..31754825,+!p2@Zfp512!0.00!3.81!Zfp512;;chr5:38611639..38611698,-!p1@Zbtb49!0.00!3.81!Zbtb49;;chr17:15701286..15701323,-!p1@Prdm9!0.00!2.72!Prdm9;;chr14:79881330..79881415,+!p3@Elf1!0.00!2.18!Elf1;;chr7:87171233..87171255,+!p3@Zfp710!0.00!1.63!Zfp710;;chrX:98449805..98449834,+!p3@Foxo4!0.00!1.63!Foxo4;;chr10:114821393..114821431,-!p5@Thap2!0.00!1.63!Thap2;;chr2:168032516..168032525,-!p5@Adnp!0.00!0.54!Adnp;;chr15:50721640..50721654,-!p7@Trps1!0.00!0.54!Trps1;;chr13:30841099..30841116,+!p1@Irf4!0.00!0.54!Irf4;;chr16:50429979..50429997,-!p4@Bbx!0.00!0.54!Bbx;;chr19:5424878..5424890,-!p7@Drap1!0.00!0.54!Drap1;;chr5:138188113..138188145,+!p9@Tsc22d4!0.00!0.54!Tsc22d4;;chr6:38097380..38097407,-!p6@D630045J12Rik!0.00!0.00!D630045J12Rik;;chr6:52133827..52133854,-!p2@Hoxa3!0.00!0.00!Hoxa3;;chr6:52108291..52108323,-!p1@Hoxa1!0.00!0.00!Hoxa1;;chr6:115372016..115372022,+!p13@Pparg!0.00!0.00!Pparg;;chr6:51382822..51382833,+!p2@Nfe2l3!0.00!0.00!Nfe2l3;;chr6:52134126..52134150,-!p3@Hoxa3!0.00!0.00!Hoxa3;;chr6:52161666..52161711,-!p1@Hoxa6!0.00!0.00!Hoxa6;;chr6:38097449..38097457,-!p16@D630045J12Rik!0.00!0.00!D630045J12Rik;;chr6:38097441..38097447,-!p13@D630045J12Rik!0.00!0.00!D630045J12Rik;;chr6:115372058..115372085,+!p3@Pparg!0.00!0.00!Pparg;;chr6:38097421..38097440,-!p7@D630045J12Rik!0.00!0.00!D630045J12Rik;;chr6:51382662..51382673,+!p3@Nfe2l3!0.00!0.00!Nfe2l3;;chr6:38097369..38097379,-!p11@D630045J12Rik!0.00!0.00!D630045J12Rik;;chr6:30908793..30908815,-!p1@Klf14!0.00!0.00!Klf14;;chr6:52158644..52158677,-!p2@Hoxa6!0.00!0.00!Hoxa6;;chr6:115311308..115311317,+!p10@Pparg!0.00!0.00!Pparg;;chr6:52158693..52158704,-!p3@Hoxa6!0.00!0.00!Hoxa6;;chr6:115372099..115372121,+!p5@Pparg!0.00!0.00!Pparg;;chr6:117811962..117811990,+!p5@Zfp239!0.00!0.00!Zfp239;;chr6:120314480..120314487,+!p6@Kdm5a!0.00!0.00!Kdm5a;;chr6:144158267..144158282,-!p16@Sox5!0.00!0.00!Sox5;;chr6:144158183..144158210,-!p11@Sox5!0.00!0.00!Sox5;;chr6:144158153..144158167,-!p19@Sox5!0.00!0.00!Sox5;;chr6:144157991..144158007,-!p9@Sox5!0.00!0.00!Sox5;;chr6:144157893..144157905,-!p14@Sox5!0.00!0.00!Sox5;;chr6:144157968..144157989,-!p7@Sox5!0.00!0.00!Sox5;;chr6:144157880..144157889,-!p25@Sox5!0.00!0.00!Sox5;;chr6:144157869..144157876,-!p26@Sox5!0.00!0.00!Sox5;;chr6:144152701..144152714,-!p24@Sox5!0.00!0.00!Sox5;;chr6:144152648..144152680,-!p5@Sox5!0.00!0.00!Sox5;;chr6:144152590..144152602,-!p22@Sox5!0.00!0.00!Sox5;;chr6:143895612..143895631,-!p3@Sox5!0.00!0.00!Sox5;;chr6:143895581..143895604,-!p6@Sox5!0.00!0.00!Sox5;;chr7:13420597..13420610,+!p5@Zfp110!0.00!0.00!Zfp110;;chr6:14851212..14851226,+!p12@Foxp2!0.00!0.00!Foxp2;;chr6:14851377..14851396,+!p10@Foxp2!0.00!0.00!Foxp2;;chr6:28348078..28348109,-!p5@Zfp800!0.00!0.00!Zfp800;;chr6:28348054..28348065,-!p7@Zfp800!0.00!0.00!Zfp800;;chr6:28347999..28348023,-!p3@Zfp800!0.00!0.00!Zfp800;;chr6:23198371..23198390,-!p1@Fezf1!0.00!0.00!Fezf1;;chr6:16848460..16848471,-!p5@Tfec!0.00!0.00!Tfec;;chr6:122657610..122657626,+!p1@Nanog,p1@Nanogpd!0.00!0.00!Nanog;;chr6:128250448..128250453,-!p8@Tead4!0.00!0.00!Tead4;;chr6:128250457..128250462,-!p9@Tead4!0.00!0.00!Tead4;;chr6:16848443..16848459,-!p3@Tfec!0.00!0.00!Tfec;;chr6:15135215..15135244,+!p11@Foxp2!0.00!0.00!Foxp2;;chr6:14853484..14853504,+!p14@Foxp2!0.00!0.00!Foxp2;;chr6:14851605..14851614,+!p17@Foxp2!0.00!0.00!Foxp2;;chr6:14851403..14851422,+!p8@Foxp2!0.00!0.00!Foxp2;;chr6:144157960..144157967,-!p20@Sox5!0.00!0.00!Sox5;;chr6:140571128..140571148,+!p10@Aebp2!0.00!0.00!Aebp2;;chr6:88148324..88148328,+!p3@Gata2!0.00!0.00!Gata2;;chr7:116093986..116093999,+!p4@Tub!0.00!0.00!Tub;; | ||
|ffid_belonging_in_development=CL:0000049,CL:0000134,UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 39: | Line 45: | ||
|is_a=FF:0000103;;FF:0200021 | |is_a=FF:0000103;;FF:0200021 | ||
|is_obsolete= | |is_obsolete= | ||
|name=macrophage, bone marrow derived | |library_id=CNhs11532 | ||
|library_id_phase_based=2:CNhs11532 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;3632 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;3632 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/macrophage%252c%2520bone%2520marrow%2520derived%252c%2520pool2.CNhs11532.3632-171A1.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/macrophage%252c%2520bone%2520marrow%2520derived%252c%2520pool2.CNhs11532.3632-171A1.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520bone%2520marrow%2520derived%252c%2520pool2.CNhs11532.3632-171A1.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520bone%2520marrow%2520derived%252c%2520pool2.CNhs11532.3632-171A1.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/macrophage%252c%2520bone%2520marrow%2520derived%252c%2520pool2.CNhs11532.3632-171A1.mm9.nobarcode.rdna.fa.gz | |||
|name=macrophage, bone marrow derived | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 46: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,0.273427585559424,0,0,0,0,-0.0843392403965415,0,0,0,0,0.094310383023109,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.319691257886324,0.62174747898574,0,0,0,0,0,0.160642500630131,-0.091558018055706,0.185127659736198,-0.984211366477826,-0.269868638010351,1.11280350661856,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.145773810963343,0,0.0472286190463524,0,0,0,-0.117389802908326,-0.310650657339386,-0.158091042771083,-0.0463773002441839,0,0.110612165294266,-0.102093492362586,0,0,0,-0.135257665540932,-0.0427582345239118,0.681668838148152,-0.0788315948399074,0,0,0,0,0,0,0.238091414570987,-0.044172402242288,0.618866726983152,0,0,0,0.47244086492021,0 | |||
|rna_box=171 | |rna_box=171 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 77: | ||
|rna_weight_ug=59.738 | |rna_weight_ug=59.738 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
|sample_cell_lot= | |sample_cell_lot= | ||
|sample_cell_type=macrophage | |sample_cell_type=macrophage | ||
| Line 77: | Line 96: | ||
|sample_strain=BALB/c | |sample_strain=BALB/c | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|time=000hr | |||
|timecourse=BMM_TB_activation_IL4,BMM_TB_activation_IFNg,BMM_TB_activation_IL13,BMM_TB_activation_IL4-IL13 | |||
|top_motifs= | |top_motifs= | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:3632-171A1;search_select_hide=table117:3632-171A1 | |||
}} | }} | ||
Latest revision as of 19:12, 4 June 2020
| Name: | macrophage, bone marrow derived |
|---|---|
| Species: | Mouse (Mus musculus) |
| Library ID: | CNhs11532 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11532
| 0 | 0 |
| 1 | 0 |
| 10 | 0 |
| 100 | 0 |
| 1000 | 0 |
| 1001 | 0.055 |
| 1002 | -0.116 |
| 1003 | -0.123 |
| 1004 | 0 |
| 1005 | 0 |
| 1006 | -0.143 |
| 1007 | -0.277 |
| 1008 | 0 |
| 1009 | -0.19 |
| 101 | -0.0725 |
| 1010 | 0 |
| 1011 | -0.0175 |
| 1012 | 0 |
| 1013 | -0.0281 |
| 1014 | -0.0874 |
| 1015 | -0.267 |
| 1016 | -0.465 |
| 1017 | 0 |
| 1018 | 0 |
| 1019 | 0 |
| 102 | 0 |
| 1020 | 0.42 |
| 1021 | 0.0839 |
| 1022 | -0.315 |
| 1023 | 0 |
| 1024 | -0.241 |
| 1025 | -0.0611 |
| 1026 | 0 |
| 1027 | 0 |
| 1028 | 0 |
| 1029 | -0.0989 |
| 103 | -0.0887 |
| 1030 | 0 |
| 1031 | -0.873 |
| 1032 | -0.184 |
| 1033 | 0 |
| 1034 | 0 |
| 1035 | 0 |
| 1036 | -0.158 |
| 1037 | 0 |
| 1038 | 0.0361 |
| 1039 | -0.0849 |
| 104 | 0 |
| 1040 | -0.809 |
| 1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11532
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11532
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.039 |
| 10 | 10 | 0.0233 |
| 100 | 100 | 0.947 |
| 101 | 101 | 0.824 |
| 102 | 102 | 0.571 |
| 103 | 103 | 0.0251 |
| 104 | 104 | 0.892 |
| 105 | 105 | 0.843 |
| 106 | 106 | 0.101 |
| 107 | 107 | 0.487 |
| 108 | 108 | 0.826 |
| 109 | 109 | 0.0345 |
| 11 | 11 | 0.0604 |
| 110 | 110 | 0.0493 |
| 111 | 111 | 0.00274 |
| 112 | 112 | 0.00894 |
| 113 | 113 | 0.63 |
| 114 | 114 | 0.0126 |
| 115 | 115 | 0.675 |
| 116 | 116 | 0.522 |
| 117 | 117 | 6.5589e-4 |
| 118 | 118 | 0.263 |
| 119 | 119 | 0.175 |
| 12 | 12 | 0.823 |
| 120 | 120 | 0.174 |
| 121 | 121 | 0.183 |
| 122 | 122 | 0.673 |
| 123 | 123 | 0.675 |
| 124 | 124 | 0.764 |
| 125 | 125 | 0.179 |
| 126 | 126 | 0.292 |
| 127 | 127 | 0.45 |
| 128 | 128 | 0.0546 |
| 129 | 129 | 0.0758 |
| 13 | 13 | 0.0118 |
| 130 | 130 | 0.865 |
| 131 | 131 | 0.423 |
| 132 | 132 | 0.662 |
| 133 | 133 | 0.823 |
| 134 | 134 | 0.526 |
| 135 | 135 | 0.908 |
| 136 | 136 | 0.995 |
| 137 | 137 | 0.103 |
| 138 | 138 | 0.998 |
| 139 | 139 | 0.0546 |
| 14 | 14 | 0.843 |
| 140 | 140 | 0.047 |
| 141 | 141 | 0.088 |
| 142 | 142 | 0.606 |
| 143 | 143 | 0.0309 |
| 144 | 144 | 0.881 |
| 145 | 145 | 0.0737 |
| 146 | 146 | 0.708 |
| 147 | 147 | 0.678 |
| 148 | 148 | 0.0546 |
| 149 | 149 | 0.0927 |
| 15 | 15 | 0.0615 |
| 150 | 150 | 0.206 |
| 151 | 151 | 0.282 |
| 152 | 152 | 0.267 |
| 153 | 153 | 0.536 |
| 154 | 154 | 0.729 |
| 155 | 155 | 0.6 |
| 156 | 156 | 0.308 |
| 157 | 157 | 0.866 |
| 158 | 158 | 0.222 |
| 159 | 159 | 0.895 |
| 160 | 160 | 0.377 |
| 161 | 161 | 0.17 |
| 162 | 162 | 0.775 |
| 163 | 163 | 0.783 |
| 164 | 164 | 0.0689 |
| 165 | 165 | 0.0589 |
| 166 | 166 | 0.783 |
| 167 | 167 | 0.391 |
| 168 | 168 | 0.955 |
| 169 | 169 | 0.00335 |
| 17 | 17 | 0.126 |
| 18 | 18 | 0.175 |
| 19 | 19 | 0.159 |
| 2 | 2 | 0.575 |
| 20 | 20 | 0.116 |
| 21 | 21 | 0.51 |
| 22 | 22 | 0.224 |
| 23 | 23 | 0.667 |
| 24 | 24 | 0.281 |
| 25 | 25 | 0.311 |
| 26 | 26 | 0.00461 |
| 27 | 27 | 0.975 |
| 28 | 28 | 0.417 |
| 29 | 29 | 0.0549 |
| 3 | 3 | 0.0179 |
| 30 | 30 | 0.537 |
| 31 | 31 | 0.649 |
| 32 | 32 | 0.836 |
| 33 | 33 | 0.123 |
| 34 | 34 | 0.955 |
| 35 | 35 | 0.46 |
| 36 | 36 | 0.0247 |
| 37 | 37 | 0.0243 |
| 38 | 38 | 0.292 |
| 39 | 39 | 0.731 |
| 4 | 4 | 0.428 |
| 40 | 40 | 0.124 |
| 41 | 41 | 0.373 |
| 42 | 42 | 0.234 |
| 43 | 43 | 0.041 |
| 44 | 44 | 0.309 |
| 45 | 45 | 0.9 |
| 46 | 46 | 0.0593 |
| 47 | 47 | 0.112 |
| 48 | 48 | 0.204 |
| 49 | 49 | 0.0546 |
| 5 | 5 | 0.178 |
| 50 | 50 | 0.987 |
| 51 | 51 | 0.864 |
| 52 | 52 | 0.888 |
| 53 | 53 | 0.571 |
| 54 | 54 | 0.75 |
| 55 | 55 | 0.95 |
| 56 | 56 | 0.476 |
| 57 | 57 | 0.43 |
| 58 | 58 | 0.311 |
| 59 | 59 | 0.161 |
| 6 | 6 | 0.885 |
| 60 | 60 | 0.203 |
| 61 | 61 | 0.151 |
| 62 | 62 | 0.0996 |
| 63 | 63 | 0.313 |
| 64 | 64 | 0.574 |
| 65 | 65 | 0.263 |
| 66 | 66 | 0.519 |
| 67 | 67 | 0.104 |
| 68 | 68 | 0.00381 |
| 69 | 69 | 0.651 |
| 7 | 7 | 0.119 |
| 70 | 70 | 0.0054 |
| 71 | 71 | 0.0284 |
| 72 | 72 | 0.178 |
| 73 | 73 | 0.0279 |
| 74 | 74 | 0.831 |
| 75 | 75 | 0.012 |
| 76 | 76 | 0.0674 |
| 77 | 77 | 0.553 |
| 78 | 78 | 0.0843 |
| 79 | 79 | 0.549 |
| 8 | 8 | 0.0329 |
| 80 | 80 | 0.692 |
| 81 | 81 | 0.243 |
| 82 | 82 | 0.276 |
| 83 | 83 | 0.879 |
| 84 | 84 | 0.687 |
| 85 | 85 | 0.355 |
| 86 | 86 | 0.226 |
| 87 | 87 | 0.62 |
| 88 | 88 | 0.699 |
| 89 | 89 | 0.154 |
| 9 | 9 | 0.518 |
| 90 | 90 | 0.0348 |
| 91 | 91 | 0.553 |
| 92 | 92 | 0.093 |
| 93 | 93 | 0.118 |
| 94 | 94 | 0.279 |
| 95 | 95 | 0.0476 |
| 96 | 96 | 0.5 |
| 97 | 97 | 0.819 |
| 98 | 98 | 0.283 |
| 99 | 99 | 1 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11532
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000103 mouse sample
FF:0200021 macrophage, bone marrow-derived sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
0000864 (tissue-resident macrophage)
0002476 (bone marrow macrophage)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0200021 (macrophage, bone marrow-derived sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
