FF:11314-117C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00006013 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00006013 | |||
|accession_numbers=CAGE;DRX008379;DRR009251;DRZ000676;DRZ002061;DRZ012026;DRZ013411 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037263;DRR041629;DRZ007271 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!3.21!1636.41!SPI1;;chr2:68592406..68592424,+!p1@PLEK!3.15!1427.00!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.53!335.06!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.48!1585.56!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.46!287.20!SPI1;;chr11:47399996..47400014,-!p4@SPI1!2.16!143.60!SPI1;;chr12:54694758..54694805,-!p1@NFE2!2.07!140.61!NFE2;;chr6:144385698..144385742,-!p2@PLAGL1!2.07!140.61!PLAGL1;;chr7:50344289..50344323,+!p1@IKZF1!2.07!116.67!IKZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.06!622.26!NCOA4;;chr2:70166258..70166288,+!p5@MXD1!2.06!113.68!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!2.05!266.25!NFKBIA;;chr7:28725715..28725727,+!p3@CREB5!2.05!131.63!CREB5;;chr14:35872962..35873025,-!p3@NFKBIA!2.01!248.30!NFKBIA;;chr11:47400032..47400043,-!p5@SPI1!2.00!98.72!SPI1;;chr7:149470641..149470694,-!p1@ZNF467!1.93!358.99!ZNF467;;chr19:36391434..36391450,-!p1@NFKBID!1.92!155.56!NFKBID;;chr2:70166128..70166141,+!p9@MXD1!1.91!80.77!MXD1;;chr7:28725740..28725778,+!p1@CREB5!1.90!655.16!CREB5;;chr19:45252008..45252024,+!p2@BCL3!1.90!245.31!BCL3;;chr5:142782823..142782854,-!p3@NR3C1!1.88!104.71!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.85!412.84!CSRNP1;;chr2:68592394..68592405,+!p2@PLEK!1.84!68.81!PLEK;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.52!AKNA;;chr13:72441315..72441454,-!p1@DACH1!1.82!125.65!DACH1;;chr2:70167296..70167306,+!p3@MXD1!1.82!98.72!MXD1;;chr2:70165338..70165355,+!p10@MXD1!1.82!65.82!MXD1;;chr11:47400045..47400060,-!p6@SPI1!1.82!65.82!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!1.81!137.61!NR4A3;;chrX:106960180..106960197,-!p2@TSC22D3!1.80!227.36!TSC22D3;;chr14:35873947..35873965,-!p1@NFKBIA!1.79!3610.88!NFKBIA;;chr3:187463179..187463201,-!p2@BCL6!1.78!236.34!BCL6;;chr2:70142189..70142223,+!p2@MXD1!1.74!361.99!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.74!74.79!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!1.74!53.85!NFE2;;chr2:157189180..157189290,-!p1@NR4A2!1.73!260.27!NR4A2;;chr17:38498402..38498445,+!p3@RARA!1.70!170.52!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.70!119.66!BCL3;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.69!77.78!PCBP2;;chr2:231090471..231090504,+!p2@SP140!1.69!47.87!SP140;;chr2:70166499..70166536,+!p6@MXD1!1.69!47.87!MXD1;;chr3:101575172..101575195,+!p5@NFKBIZ!1.69!47.87!NFKBIZ;;chr5:176735063..176735088,-!p2@MXD3!1.69!47.87!MXD3;;chr1:156470515..156470542,-!p2@MEF2D!1.68!233.35!MEF2D;;chr10:51572339..51572376,+!p4@NCOA4!1.68!101.71!NCOA4;;chr7:149470540..149470596,-!p2@ZNF467!1.67!59.83!ZNF467;;chr14:75746722..75746777,+!p2@FOS!1.66!56.84!FOS;;chr2:70165961..70165981,+!p8@MXD1!1.66!44.87!MXD1;;chr5:131826457..131826514,-!p1@IRF1!1.65!1606.50!IRF1;;chr9:94186101..94186122,-!p1@NFIL3!1.65!571.40!NFIL3;;chr4:106155658..106155662,+!p5@TET2!1.65!53.85!TET2;;chr7:50343634..50343717,+!p2@IKZF1!1.63!41.88!IKZF1;;chr19:45251395..45251432,+!p8@BCL3!1.63!41.88!BCL3;;chr1:8484007..8484061,-!p13@RERE!1.61!50.86!RERE;;chrX:106960285..106960299,-!p1@TSC22D3!1.60!987.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.60!53.85!IRF2;;chr2:70166156..70166179,+!p4@MXD1!1.60!38.89!MXD1;;chr21:34442439..34442455,+!p1@OLIG1!1.60!38.89!OLIG1;;chr12:57919293..57919311,+!p3@MBD6!1.59!98.72!MBD6;;chr19:45254529..45254561,+!p10@BCL3!1.57!47.87!BCL3;;chr9:135854091..135854159,+!p1@GFI1B!1.57!35.90!GFI1B;;chr16:31885093..31885165,+!p1@ZNF267!1.56!511.57!ZNF267;;chr17:38498594..38498661,+!p2@RARA!1.56!113.68!RARA;;chr3:187463220..187463232,-!p3@BCL6!1.56!101.71!BCL6;;chr4:106068026..106068084,+!p1@TET2!1.55!299.16!TET2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.55!254.29!ZCCHC6;;chr20:48807615..48807644,+!p6@CEBPB!1.55!56.84!CEBPB;;chr2:24930357..24930402,+!p3@NCOA1!1.55!38.89!NCOA1;;chr4:106156933..106156947,+!p3@TET2!1.54!44.87!TET2;;chr5:172483347..172483407,+!p1@C5orf41!1.53!236.34!CREBRF;;chr5:142782862..142782881,-!p11@NR3C1!1.53!32.91!NR3C1;;chr2:231090433..231090469,+!p1@SP140!1.53!32.91!SP140;;chr2:68619202..68619227,+!p6@PLEK!1.53!32.91!PLEK;;chr2:70165396..70165410,+!p15@MXD1!1.53!32.91!MXD1;;chr2:61108695..61108753,+!p1@REL!1.52!212.40!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.52!191.46!CSRNP1;;chr1:221052776..221052799,+!p1@HLX!1.52!56.84!HLX;;chr19:45261992..45262010,+!p9@BCL3!1.52!44.87!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.52!35.90!NFKBIA;;chr19:45251943..45252006,+!p1@BCL3!1.51!789.79!BCL3;;chr4:38665769..38665801,+!p2@KLF3!1.51!272.24!KLF3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!56.84!NR4A3;;chr12:57919364..57919394,+!p4@MBD6!1.49!59.83!MBD6;;chr14:62193465..62193490,+!p7@HIF1A!1.49!41.88!HIF1A;;chr1:221052733..221052749,+!p2@HLX!1.49!38.89!HLX;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.92!NFE2;;chr9:102584241..102584261,+!p4@NR4A3!1.48!44.87!NR4A3;;chr2:208031943..208031978,-!p5@KLF7!1.48!38.89!KLF7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.47!1403.07!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.51!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.47!176.51!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.47!68.81!CREM;;chr8:123793988..123794016,+!p1@ZHX2!1.46!47.87!ZHX2;;chr9:94186085..94186096,-!p3@NFIL3!1.46!44.87!NFIL3;;chr4:140098339..140098392,-!p1@ELF2!1.45!215.40!ELF2;;chr6:44355499..44355514,+!p3@CDC5L!1.45!29.92!CDC5L;;chr19:45254508..45254528,+!p12@BCL3!1.45!29.92!BCL3;;chr6:44233252..44233296,-!p1@NFKBIE!1.44!254.29!NFKBIE;;chr10:104154246..104154347,+!p3@NFKB2!1.44!158.56!NFKB2;;chr9:137217986..137218049,+!p3@RXRA!1.44!74.79!RXRA;;chr4:106157017..106157029,+!p7@TET2!1.44!29.92!TET2;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.87!RUNX3;;chr14:62203749..62203798,+!p5@HIF1A!1.42!38.89!HIF1A;;chr2:97202480..97202499,+!p1@ARID5A!1.41!239.33!ARID5A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.41!224.37!ZCCHC6;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!77.78!HIVEP1;;chr20:48807171..48807234,+!p4@CEBPB!1.41!53.85!CEBPB;;chr1:154975110..154975149,+!p2@ZBTB7B!1.41!50.86!ZBTB7B;;chr2:28618532..28618610,+!p4@FOSL2!1.41!41.88!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.40!2743.31!FOS;;chr14:62203595..62203676,+!p4@HIF1A!1.40!44.87!HIF1A;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.92!NFKB2;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.93!SPI1;;chr14:35872542..35872553,-!p10@NFKBIA!1.40!23.93!NFKBIA;;chr1:244219392..244219409,+!p5@ZNF238!1.40!23.93!ZNF238;;chr7:28763873..28763898,+!p7@CREB5!1.40!23.93!CREB5;;chr9:117138946..117138968,-!p4@AKNA!1.40!23.93!AKNA;;chr2:68619491..68619507,+!p7@PLEK!1.40!23.93!PLEK;;chr15:42743341..42743377,-!p3@ZFP106!1.39!38.89!ZFP106;;chr14:62213758..62213774,+!p8@HIF1A!1.39!29.92!HIF1A;;chr17:38497662..38497713,+!p4@RARA!1.39!26.92!RARA;;chr11:128563948..128564003,+!p1@FLI1!1.38!266.25!FLI1;;chr9:117160738..117160782,-!p2@AKNA!1.38!92.74!AKNA;;chr3:18466660..18466676,-!p5@SATB1!1.38!26.92!SATB1;;chr2:231084659..231084721,-!p1@SP110!1.37!505.58!SP110;;chr10:51565239..51565263,+!p2@NCOA4!1.37!502.59!NCOA4;;chr14:35872494..35872511,-!p5@NFKBIA!1.37!29.92!NFKBIA;;chr20:48808321..48808329,+!p18@CEBPB!1.36!23.93!CEBPB;;chr20:48807351..48807384,+!p1@CEBPB!1.35!2121.05!CEBPB;;chrX:129244454..129244488,-!p1@ELF4!1.35!149.58!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.35!104.71!HIVEP1;;chr3:63898321..63898396,+!p3@ATXN7!1.35!47.87!ATXN7;;chr2:61108808..61108821,+!p3@REL!1.35!26.92!REL;;chr6:108882109..108882173,+!p2@FOXO3!1.34!110.69!FOXO3;;chr2:113057415..113057477,+!p3@ZC3H6!1.34!26.92!ZC3H6;;chr17:38504601..38504634,+!p9@RARA!1.34!23.93!RARA;;chr14:75746340..75746368,+!p3@FOS!1.34!20.94!FOS;;chr13:72440772..72440847,-!p5@DACH1!1.34!20.94!DACH1;;chr7:149470297..149470337,-!p3@ZNF467!1.34!20.94!ZNF467;;chr8:22550982..22550999,-!p1@EGR3!1.33!56.84!EGR3;;chr20:48807456..48807475,+!p3@CEBPB!1.33!38.89!CEBPB;;chr8:71316021..71316068,-!p1@NCOA2!1.32!179.50!NCOA2;;chr6:15246200..15246214,+!p2@JARID2!1.32!53.85!JARID2;;chr1:200379104..200379128,-!p2@ZNF281!1.32!47.87!ZNF281;;chr2:231084639..231084654,-!p2@SP110!1.32!32.91!SP110;;chr9:127533519..127533573,-!p2@NR6A1!1.32!23.93!NR6A1;;chr7:106809470..106809481,+!p2@HBP1!1.31!26.92!HBP1;;chr21:30671189..30671207,+!p4@BACH1!1.30!65.82!BACH1;;chr12:49445907..49445923,-!p2@MLL2!1.30!26.92!MLL2;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.75!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.29!26.92!MLL5;;chr2:231077626..231077651,-!p6@SP110!1.29!23.93!SP110;;chr16:69727150..69727178,+!p7@NFAT5!1.29!20.94!NFAT5;;chr19:16435625..16435682,+!p1@KLF2!1.28!565.42!KLF2;;chr19:19496577..19496619,+!p5@GATAD2A!1.28!59.83!GATAD2A;;chr15:74833584..74833626,+!p1@ARID3B!1.28!41.88!ARID3B;;chr20:48807430..48807439,+!p8@CEBPB!1.28!26.92!CEBPB;;chr20:48808064..48808086,+!p15@CEBPB!1.28!17.95!CEBPB;;chr2:157186630..157186686,-!p6@NR4A2!1.28!17.95!NR4A2;;chr2:70166212..70166223,+!p16@MXD1!1.28!17.95!MXD1;;chrX:48644984..48645005,+!p1@GATA1!1.28!17.95!GATA1;;chrX:129244430..129244442,-!p5@ELF4!1.28!17.95!ELF4;;chr19:21688458..21688467,+!p3@ZNF429!1.28!17.95!ZNF429;;chr5:172483414..172483425,+!p3@C5orf41!1.28!17.95!CREBRF;;chr3:187463248..187463264,-!p1@BCL6!1.27!367.97!BCL6;;chr6:45390343..45390388,+!p10@RUNX2!1.27!23.93!RUNX2;;chr14:89878529..89878559,-!p5@FOXN3!1.27!23.93!FOXN3;;chr19:45251805..45251840,+!p4@BCL3!1.26!53.85!BCL3;;chr1:67395833..67395851,+!p8@MIER1!1.26!20.94!MIER1;;chr1:156470494..156470505,-!p3@MEF2D!1.24!23.93!MEF2D;;chr7:99097863..99097936,-!p1@ZNF394!1.23!158.56!ZNF394;;chr14:58765217..58765301,+!p1@ARID4A!1.23!140.61!ARID4A;;chr8:80680024..80680046,-!p2@HEY1!1.23!17.95!HEY1;;chr16:3930681..3930721,-!p1@CREBBP!1.22!266.25!CREBBP;;chr21:30671211..30671234,+!p3@BACH1!1.22!74.79!BACH1;;chr6:20403916..20403965,+!p3@E2F3!1.22!68.81!E2F3;;chr3:150126904..150126958,+!p7@TSC22D2!1.22!26.92!TSC22D2;;chr6:45390300..45390335,+!p4@RUNX2!1.22!23.93!RUNX2;;chr9:32550965..32551031,-!p4@TOPORS!1.22!23.93!TOPORS;;chr20:48807587..48807603,+!p16@CEBPB!1.22!17.95!CEBPB;;chr19:12902289..12902307,+!p1@JUNB!1.21!3416.42!JUNB;;chr18:74207147..74207183,-!p1@ZNF516!1.21!44.87!ZNF516;;chr3:113415441..113415500,-!p1@KIAA2018!1.20!80.77!KIAA2018;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.83!CREB1;;c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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!3.21!1636.41!SPI1;;chr2:68592406..68592424,+!p1@PLEK!3.15!1427.00!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.53!335.06!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.48!1585.56!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.46!287.20!SPI1;;chr11:47399996..47400014,-!p4@SPI1!2.16!143.60!SPI1;;chr12:54694758..54694805,-!p1@NFE2!2.07!140.61!NFE2;;chr6:144385698..144385742,-!p2@PLAGL1!2.07!140.61!PLAGL1;;chr7:50344289..50344323,+!p1@IKZF1!2.07!116.67!IKZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.06!622.26!NCOA4;;chr2:70166258..70166288,+!p5@MXD1!2.06!113.68!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!2.05!266.25!NFKBIA;;chr7:28725715..28725727,+!p3@CREB5!2.05!131.63!CREB5;;chr14:35872962..35873025,-!p3@NFKBIA!2.01!248.30!NFKBIA;;chr11:47400032..47400043,-!p5@SPI1!2.00!98.72!SPI1;;chr7:149470641..149470694,-!p1@ZNF467!1.93!358.99!ZNF467;;chr19:36391434..36391450,-!p1@NFKBID!1.92!155.56!NFKBID;;chr2:70166128..70166141,+!p9@MXD1!1.91!80.77!MXD1;;chr7:28725740..28725778,+!p1@CREB5!1.90!655.16!CREB5;;chr19:45252008..45252024,+!p2@BCL3!1.90!245.31!BCL3;;chr5:142782823..142782854,-!p3@NR3C1!1.88!104.71!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.85!412.84!CSRNP1;;chr2:68592394..68592405,+!p2@PLEK!1.84!68.81!PLEK;;chr9:117150254..117150271,-!p1@AKNA!1.82!170.52!AKNA;;chr13:72441315..72441454,-!p1@DACH1!1.82!125.65!DACH1;;chr2:70167296..70167306,+!p3@MXD1!1.82!98.72!MXD1;;chr2:70165338..70165355,+!p10@MXD1!1.82!65.82!MXD1;;chr11:47400045..47400060,-!p6@SPI1!1.82!65.82!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!1.81!137.61!NR4A3;;chrX:106960180..106960197,-!p2@TSC22D3!1.80!227.36!TSC22D3;;chr14:35873947..35873965,-!p1@NFKBIA!1.79!3610.88!NFKBIA;;chr3:187463179..187463201,-!p2@BCL6!1.78!236.34!BCL6;;chr2:70142189..70142223,+!p2@MXD1!1.74!361.99!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.74!74.79!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!1.74!53.85!NFE2;;chr2:157189180..157189290,-!p1@NR4A2!1.73!260.27!NR4A2;;chr17:38498402..38498445,+!p3@RARA!1.70!170.52!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.70!119.66!BCL3;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.69!77.78!PCBP2;;chr2:231090471..231090504,+!p2@SP140!1.69!47.87!SP140;;chr2:70166499..70166536,+!p6@MXD1!1.69!47.87!MXD1;;chr3:101575172..101575195,+!p5@NFKBIZ!1.69!47.87!NFKBIZ;;chr5:176735063..176735088,-!p2@MXD3!1.69!47.87!MXD3;;chr1:156470515..156470542,-!p2@MEF2D!1.68!233.35!MEF2D;;chr10:51572339..51572376,+!p4@NCOA4!1.68!101.71!NCOA4;;chr7:149470540..149470596,-!p2@ZNF467!1.67!59.83!ZNF467;;chr14:75746722..75746777,+!p2@FOS!1.66!56.84!FOS;;chr2:70165961..70165981,+!p8@MXD1!1.66!44.87!MXD1;;chr5:131826457..131826514,-!p1@IRF1!1.65!1606.50!IRF1;;chr9:94186101..94186122,-!p1@NFIL3!1.65!571.40!NFIL3;;chr4:106155658..106155662,+!p5@TET2!1.65!53.85!TET2;;chr7:50343634..50343717,+!p2@IKZF1!1.63!41.88!IKZF1;;chr19:45251395..45251432,+!p8@BCL3!1.63!41.88!BCL3;;chr1:8484007..8484061,-!p13@RERE!1.61!50.86!RERE;;chrX:106960285..106960299,-!p1@TSC22D3!1.60!987.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.60!53.85!IRF2;;chr2:70166156..70166179,+!p4@MXD1!1.60!38.89!MXD1;;chr21:34442439..34442455,+!p1@OLIG1!1.60!38.89!OLIG1;;chr12:57919293..57919311,+!p3@MBD6!1.59!98.72!MBD6;;chr19:45254529..45254561,+!p10@BCL3!1.57!47.87!BCL3;;chr9:135854091..135854159,+!p1@GFI1B!1.57!35.90!GFI1B;;chr16:31885093..31885165,+!p1@ZNF267!1.56!511.57!ZNF267;;chr17:38498594..38498661,+!p2@RARA!1.56!113.68!RARA;;chr3:187463220..187463232,-!p3@BCL6!1.56!101.71!BCL6;;chr4:106068026..106068084,+!p1@TET2!1.55!299.16!TET2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.55!254.29!ZCCHC6;;chr20:48807615..48807644,+!p6@CEBPB!1.55!56.84!CEBPB;;chr2:24930357..24930402,+!p3@NCOA1!1.55!38.89!NCOA1;;chr4:106156933..106156947,+!p3@TET2!1.54!44.87!TET2;;chr5:172483347..172483407,+!p1@C5orf41!1.53!236.34!CREBRF;;chr5:142782862..142782881,-!p11@NR3C1!1.53!32.91!NR3C1;;chr2:231090433..231090469,+!p1@SP140!1.53!32.91!SP140;;chr2:68619202..68619227,+!p6@PLEK!1.53!32.91!PLEK;;chr2:70165396..70165410,+!p15@MXD1!1.53!32.91!MXD1;;chr2:61108695..61108753,+!p1@REL!1.52!212.40!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.52!191.46!CSRNP1;;chr1:221052776..221052799,+!p1@HLX!1.52!56.84!HLX;;chr19:45261992..45262010,+!p9@BCL3!1.52!44.87!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.52!35.90!NFKBIA;;chr19:45251943..45252006,+!p1@BCL3!1.51!789.79!BCL3;;chr4:38665769..38665801,+!p2@KLF3!1.51!272.24!KLF3;;chr9:102584128..102584144,+!p3@NR4A3!1.50!56.84!NR4A3;;chr12:57919364..57919394,+!p4@MBD6!1.49!59.83!MBD6;;chr14:62193465..62193490,+!p7@HIF1A!1.49!41.88!HIF1A;;chr1:221052733..221052749,+!p2@HLX!1.49!38.89!HLX;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.92!NFE2;;chr9:102584241..102584261,+!p4@NR4A3!1.48!44.87!NR4A3;;chr2:208031943..208031978,-!p5@KLF7!1.48!38.89!KLF7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.47!1403.07!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.51!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.47!176.51!ELF1;;chr10:35484053..35484076,+!p1@CREM!1.47!68.81!CREM;;chr8:123793988..123794016,+!p1@ZHX2!1.46!47.87!ZHX2;;chr9:94186085..94186096,-!p3@NFIL3!1.46!44.87!NFIL3;;chr4:140098339..140098392,-!p1@ELF2!1.45!215.40!ELF2;;chr6:44355499..44355514,+!p3@CDC5L!1.45!29.92!CDC5L;;chr19:45254508..45254528,+!p12@BCL3!1.45!29.92!BCL3;;chr6:44233252..44233296,-!p1@NFKBIE!1.44!254.29!NFKBIE;;chr10:104154246..104154347,+!p3@NFKB2!1.44!158.56!NFKB2;;chr9:137217986..137218049,+!p3@RXRA!1.44!74.79!RXRA;;chr4:106157017..106157029,+!p7@TET2!1.44!29.92!TET2;;chr1:25256756..25256774,-!p1@RUNX3!1.43!47.87!RUNX3;;chr14:62203749..62203798,+!p5@HIF1A!1.42!38.89!HIF1A;;chr2:97202480..97202499,+!p1@ARID5A!1.41!239.33!ARID5A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.41!224.37!ZCCHC6;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!77.78!HIVEP1;;chr20:48807171..48807234,+!p4@CEBPB!1.41!53.85!CEBPB;;chr1:154975110..154975149,+!p2@ZBTB7B!1.41!50.86!ZBTB7B;;chr2:28618532..28618610,+!p4@FOSL2!1.41!41.88!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.40!2743.31!FOS;;chr14:62203595..62203676,+!p4@HIF1A!1.40!44.87!HIF1A;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.92!NFKB2;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.93!SPI1;;chr14:35872542..35872553,-!p10@NFKBIA!1.40!23.93!NFKBIA;;chr1:244219392..244219409,+!p5@ZNF238!1.40!23.93!ZNF238;;chr7:28763873..28763898,+!p7@CREB5!1.40!23.93!CREB5;;chr9:117138946..117138968,-!p4@AKNA!1.40!23.93!AKNA;;chr2:68619491..68619507,+!p7@PLEK!1.40!23.93!PLEK;;chr15:42743341..42743377,-!p3@ZFP106!1.39!38.89!ZFP106;;chr14:62213758..62213774,+!p8@HIF1A!1.39!29.92!HIF1A;;chr17:38497662..38497713,+!p4@RARA!1.39!26.92!RARA;;chr11:128563948..128564003,+!p1@FLI1!1.38!266.25!FLI1;;chr9:117160738..117160782,-!p2@AKNA!1.38!92.74!AKNA;;chr3:18466660..18466676,-!p5@SATB1!1.38!26.92!SATB1;;chr2:231084659..231084721,-!p1@SP110!1.37!505.58!SP110;;chr10:51565239..51565263,+!p2@NCOA4!1.37!502.59!NCOA4;;chr14:35872494..35872511,-!p5@NFKBIA!1.37!29.92!NFKBIA;;chr20:48808321..48808329,+!p18@CEBPB!1.36!23.93!CEBPB;;chr20:48807351..48807384,+!p1@CEBPB!1.35!2121.05!CEBPB;;chrX:129244454..129244488,-!p1@ELF4!1.35!149.58!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.35!104.71!HIVEP1;;chr3:63898321..63898396,+!p3@ATXN7!1.35!47.87!ATXN7;;chr2:61108808..61108821,+!p3@REL!1.35!26.92!REL;;chr6:108882109..108882173,+!p2@FOXO3!1.34!110.69!FOXO3;;chr2:113057415..113057477,+!p3@ZC3H6!1.34!26.92!ZC3H6;;chr17:38504601..38504634,+!p9@RARA!1.34!23.93!RARA;;chr14:75746340..75746368,+!p3@FOS!1.34!20.94!FOS;;chr13:72440772..72440847,-!p5@DACH1!1.34!20.94!DACH1;;chr7:149470297..149470337,-!p3@ZNF467!1.34!20.94!ZNF467;;chr8:22550982..22550999,-!p1@EGR3!1.33!56.84!EGR3;;chr20:48807456..48807475,+!p3@CEBPB!1.33!38.89!CEBPB;;chr8:71316021..71316068,-!p1@NCOA2!1.32!179.50!NCOA2;;chr6:15246200..15246214,+!p2@JARID2!1.32!53.85!JARID2;;chr1:200379104..200379128,-!p2@ZNF281!1.32!47.87!ZNF281;;chr2:231084639..231084654,-!p2@SP110!1.32!32.91!SP110;;chr9:127533519..127533573,-!p2@NR6A1!1.32!23.93!NR6A1;;chr7:106809470..106809481,+!p2@HBP1!1.31!26.92!HBP1;;chr21:30671189..30671207,+!p4@BACH1!1.30!65.82!BACH1;;chr12:49445907..49445923,-!p2@MLL2!1.30!26.92!MLL2;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.75!ETV6;;chr7:104654718..104654741,+!p3@MLL5!1.29!26.92!MLL5;;chr2:231077626..231077651,-!p6@SP110!1.29!23.93!SP110;;chr16:69727150..69727178,+!p7@NFAT5!1.29!20.94!NFAT5;;chr19:16435625..16435682,+!p1@KLF2!1.28!565.42!KLF2;;chr19:19496577..19496619,+!p5@GATAD2A!1.28!59.83!GATAD2A;;chr15:74833584..74833626,+!p1@ARID3B!1.28!41.88!ARID3B;;chr20:48807430..48807439,+!p8@CEBPB!1.28!26.92!CEBPB;;chr20:48808064..48808086,+!p15@CEBPB!1.28!17.95!CEBPB;;chr2:157186630..157186686,-!p6@NR4A2!1.28!17.95!NR4A2;;chr2:70166212..70166223,+!p16@MXD1!1.28!17.95!MXD1;;chrX:48644984..48645005,+!p1@GATA1!1.28!17.95!GATA1;;chrX:129244430..129244442,-!p5@ELF4!1.28!17.95!ELF4;;chr19:21688458..21688467,+!p3@ZNF429!1.28!17.95!ZNF429;;chr5:172483414..172483425,+!p3@C5orf41!1.28!17.95!CREBRF;;chr3:187463248..187463264,-!p1@BCL6!1.27!367.97!BCL6;;chr6:45390343..45390388,+!p10@RUNX2!1.27!23.93!RUNX2;;chr14:89878529..89878559,-!p5@FOXN3!1.27!23.93!FOXN3;;chr19:45251805..45251840,+!p4@BCL3!1.26!53.85!BCL3;;chr1:67395833..67395851,+!p8@MIER1!1.26!20.94!MIER1;;chr1:156470494..156470505,-!p3@MEF2D!1.24!23.93!MEF2D;;chr7:99097863..99097936,-!p1@ZNF394!1.23!158.56!ZNF394;;chr14:58765217..58765301,+!p1@ARID4A!1.23!140.61!ARID4A;;chr8:80680024..80680046,-!p2@HEY1!1.23!17.95!HEY1;;chr16:3930681..3930721,-!p1@CREBBP!1.22!266.25!CREBBP;;chr21:30671211..30671234,+!p3@BACH1!1.22!74.79!BACH1;;chr6:20403916..20403965,+!p3@E2F3!1.22!68.81!E2F3;;chr3:150126904..150126958,+!p7@TSC22D2!1.22!26.92!TSC22D2;;chr6:45390300..45390335,+!p4@RUNX2!1.22!23.93!RUNX2;;chr9:32550965..32551031,-!p4@TOPORS!1.22!23.93!TOPORS;;chr20:48807587..48807603,+!p16@CEBPB!1.22!17.95!CEBPB;;chr19:12902289..12902307,+!p1@JUNB!1.21!3416.42!JUNB;;chr18:74207147..74207183,-!p1@ZNF516!1.21!44.87!ZNF516;;chr3:113415441..113415500,-!p1@KIAA2018!1.20!80.77!KIAA2018;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.83!CREB1;;c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2.99!CRAMP1L;;chr16:31141328..31141350,+!p2@KAT8!0.60!2.99!KAT8;;chr16:69681215..69681227,+!p17@NFAT5!0.60!2.99!NFAT5;;chr16:88752836..88752852,-!p3@SNAI3!0.60!2.99!SNAI3;;chr16:88752861..88752884,-!p2@SNAI3!0.60!2.99!SNAI3;;chr17:38020516..38020544,-!p5@IKZF3!0.60!2.99!IKZF3;;chr17:38487563..38487578,+!p10@RARA!0.60!2.99!RARA;;chr17:40540591..40540600,-!p3@STAT3!0.60!2.99!STAT3;;chr17:47439327..47439336,-!p4@ZNF652!0.60!2.99!ZNF652;;chr18:46477326..46477341,-!p2@SMAD7!0.60!2.99!SMAD7;;chr19:13213496..13213501,-!p10@LYL1!0.60!2.99!LYL1;;chr19:13213691..13213696,-!p9@LYL1!0.60!2.99!LYL1;;chr19:18391642..18391645,-!p10@JUND!0.60!2.99!JUND;;chr19:18391785..18391792,-!p9@JUND!0.60!2.99!JUND;;chr19:20959142..20959151,+!p2@ZNF66P!0.60!2.99!ZNF66P;;chr19:3381943..3381961,+!p8@NFIC!0.60!2.99!NFIC;;chr19:35760698..35760738,+!p8@USF2!0.60!2.99!USF2;;chr19:35760750..35760764,+!p16@USF2!0.60!2.99!USF2;;chr19:3576938..3576962,+!p9@HMG20B!0.60!2.99!HMG20B;;chr18:32924372..32924430,-!p1@ZNF24!0.59!107.70!ZNF24;;chr7:4815238..4815327,+!p1@KIAA0415!0.59!77.78!AP5Z1;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.59!38.89!TCF20;;chr1:202777561..202777582,-!p3@KDM5B!0.59!29.92!KDM5B;;chr1:200379180..200379191,-!p3@ZNF281!0.59!5.98!ZNF281;;chr3:18466787..18466839,-!p1@SATB1!0.58!14.96!SATB1;;chr12:53853054..53853092,+!p6@PCBP2!0.58!5.98!PCBP2;;chr19:19976714..19976729,+!p3@ZNF253!0.58!5.98!ZNF253;;chr20:52210368..52210384,-!p1@ZNF217!0.58!5.98!ZNF217;;chr1:161015752..161015778,-!p2@USF1!0.57!38.89!USF1;;chr12:6798410..6798503,-!p1@ZNF384!0.57!35.90!ZNF384;;chr6:157100031..157100112,+!p2@ARID1B!0.57!17.95!ARID1B;;chr18:45457423..45457468,-!p5@SMAD2!0.57!11.97!SMAD2;;chr19:35455110..35455149,-!p1@ZNF792!0.57!5.98!ZNF792;;chr19:4065848..4065909,-!p4@ZBTB7A!0.57!5.98!ZBTB7A;;chr22:46546494..46546525,+!p2@PPARA!0.57!5.98!PPARA;;chr7:44924939..44924993,-!p2@PURB!0.57!5.98!PURB;;chr12:57916434..57916445,+!p11@MBD6!0.57!2.99!MBD6;;chr4:81104865..81104886,+!p6@PRDM8!0.57!2.99!PRDM8;;chr9:86595113..86595141,-!p1@HNRNPK!0.56!774.83!HNRPK;;chr5:150080543..150080664,-!p1@RBM22!0.56!140.61!RBM22;;chr19:52772832..52772861,+!p1@ZNF766!0.56!32.91!ZNF766;;chr7:6676943..6676984,+!p1@ENST00000427912!0.56!29.92!ZNF316;;chrX:134477924..134477988,-!p1@ZNF75D!0.56!11.97!ZNF75D;;chr1:42800836..42800847,-!p3@FOXJ3!0.56!5.98!FOXJ3;;chr15:90544532..90544563,+!p1@ZNF710!0.56!5.98!ZNF710;;chr19:19617430..19617443,+!p9@GATAD2A!0.56!5.98!GATAD2A;;chr15:31619119..31619131,+!p14@KLF13!0.56!2.99!KLF13;;chr15:76629123..76629151,+!p1@ISL2!0.56!2.99!ISL2;;chr16:3333546..3333558,+!p5@ZNF263!0.56!2.99!ZNF263;;chr18:3448314..3448333,+!p18@TGIF1!0.56!2.99!TGIF1;;chr19:45579762..45579772,-!p2@ZNF296!0.56!2.99!ZNF296;;chr1:203764689..203764700,+!p3@ZC3H11A!0.56!2.99!ZC3H11A;;chr1:78445097..78445110,-!p7@FUBP1!0.56!2.99!FUBP1;;chr8:80680078..80680101,-!p3@HEY1!0.56!2.99!HEY1;;chrX:101187036..101187056,-!p2@ZMAT1!0.56!2.99!ZMAT1;;chr12:72056749..72056767,+!p6@THAP2!0.56!2.99!THAP2;;chr10:76586348..76586366,+!p1@KAT6B!0.55!23.93!KAT6B;;chr4:7045042..7045145,+!p1@TADA2B!0.55!23.93!TADA2B;;chr12:498695..498748,-!p2@KDM5A!0.55!20.94!KDM5A;;chr19:4067039..4067064,-!p3@ZBTB7A!0.55!8.97!ZBTB7A;;chrX:106959661..106959763,-!p4@TSC22D3!0.55!8.97!TSC22D3;;chr12:53773927..53773943,+!p3@SP1!0.55!5.98!SP1;;chr17:2304226..2304239,-!p3@MNT!0.55!5.98!MNT;;chr19:15560730..15560772,-!p3@WIZ!0.55!5.98!WIZ;;chr19:21579964..21579975,+!p2@ZNF493!0.55!2.99!ZNF493;;chr14:64971323..64971333,-!p10@ZBTB25!0.55!2.99!ZBTB25;;chr9:128509857..128509872,+!p6@PBX3!0.55!2.99!PBX3;;chr1:35644482..35644486,-!p11@SFPQ!0.55!2.99!SFPQ;;chr3:14989138..14989151,+!p6@NR2C2!0.55!2.99!NR2C2;;chr3:170076223..170076242,+!p6@SKIL!0.55!2.99!SKIL;;chr19:1863568..1863586,-!p1@KLF16!0.54!104.71!KLF16;;chrX:153363125..153363182,-!p1@MECP2!0.54!83.77!MECP2;;chr20:30795511..30795562,-!p1@PLAGL2!0.54!56.84!PLAGL2;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000775;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor2.CNhs11959.11314-117C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11314-117C9 | |id=FF:11314-117C9 | ||
|is_a=EFO:0002091;;FF:0000122 | |is_a=EFO:0002091;;FF:0000122 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11959 | |||
|library_id_phase_based=2:CNhs11959 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11314 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GTTTCG.11314 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11314 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GTTTCG.11314 | |||
|name=Neutrophils, donor2 | |name=Neutrophils, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11959,LSID836,release011,COMPLETED | |profile_hcage=CNhs11959,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.422028147738837,0,0,0,0,1.44055678121485,0,1.07077038234316,0.887680689693174,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447825591247215,0,0,0,0,0,1.01486347370933,0,0,0.711099705698812,0,0,0,0,0,0,0,0,0,0,0,0,0.959573574871054,0.521130133327004,0,0,0,0,0,0,0,0.276359279684987,0,0,0,0.601148601595643,0,-0.0499632213353613,0,1.01582900873479,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.601148601595643,0,0.601148601595643,0,0,1.20298044633303,0,0,0,0.274160004916674,0,0,0,0,0,0,-0.61448815919137,0,0,0,-0.276924707141057,-0.211197402695869,0,0,0.300574300797821,0,-0.0980353512377064,0.860483643348176,0,0,0,0,0,0.300574300797821,0.99890610258435,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,1.01309450507393,1.33504864160722,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=3H100-94-25 | |rna_catalog_number=3H100-94-25 | ||
Line 59: | Line 82: | ||
|rna_tube_id=117C9 | |rna_tube_id=117C9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.GTTTCG | |||
|sample_age=38 | |sample_age=38 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 106: | ||
|top_motifs=ZBTB16:4.57702921807;DMAP1_NCOR{1,2}_SMARC:3.92738260409;FOXD3:3.78824699616;NR1H4:3.61458066714;PITX1..3:3.50976091322;CEBPA,B_DDIT3:3.4129402884;FOXP3:3.38967384948;FOXA2:3.31503965973;SPI1:3.25790428878;BPTF:3.19971444848;SPIB:3.03268619922;CDX1,2,4:2.89267601785;HBP1_HMGB_SSRP1_UBTF:2.86765902133;NKX3-1:2.83356658164;TOPORS:2.63204182378;FOXO1,3,4:2.59711515023;T:2.5385125952;ATF5_CREB3:2.51807784641;FOXN1:2.51677368016;NKX3-2:2.51495125063;ESRRA:2.37749560203;FOX{F1,F2,J1}:2.37030820205;NFIL3:2.3315864306;ETS1,2:2.32787825452;ALX1:2.31413567064;ALX4:2.30845302713;RUNX1..3:2.16813773186;IKZF2:2.14547852646;TAL1_TCF{3,4,12}:2.04239992052;AIRE:1.97574630468;PPARG:1.92689990203;RREB1:1.82376331649;NFKB1_REL_RELA:1.79938516829;NFE2L1:1.78817631863;NFIX:1.77522690579;NKX2-2,8:1.76364853871;HLF:1.65512562792;HMX1:1.65457977162;EVI1:1.64418172479;NR6A1:1.54250195563;FOXP1:1.53308472068;HMGA1,2:1.41086558406;SPZ1:1.37604855085;RFX2..5_RFXANK_RFXAP:1.35161298679;GATA4:1.29060987555;HOXA9_MEIS1:1.28828071666;NANOG{mouse}:1.28169756129;TFCP2:1.25605399657;TGIF1:1.22732844202;NFE2L2:1.20915790329;MYFfamily:1.19323823608;SREBF1,2:1.14492271846;FOX{D1,D2}:1.11162359813;IRF7:1.10024886942;POU1F1:0.960266077182;PAX2:0.94199889413;EP300:0.908343904723;SMAD1..7,9:0.889117206999;FOX{I1,J2}:0.850289860192;RXR{A,B,G}:0.810130936778;IRF1,2:0.805177590215;NKX6-1,2:0.768836812846;ELF1,2,4:0.742288465954;ATF6:0.711973939512;ZNF423:0.709226863869;TFAP4:0.701529903223;MAFB:0.685511270978;STAT2,4,6:0.666109972964;NKX2-1,4:0.623358806631;EBF1:0.544755154176;MYB:0.519166086352;MZF1:0.441254256298;POU6F1:0.415595488787;ATF4:0.400976072152;HIF1A:0.3440019799;POU5F1:0.33103770506;RXRA_VDR{dimer}:0.327489731969;EN1,2:0.32358052298;NR3C1:0.316224830046;CREB1:0.312375877408;ZIC1..3:0.270994544378;NR5A1,2:0.264316570448;UFEwm:0.262739257508;MYOD1:0.244141884353;NFE2:0.239604679879;PAX3,7:0.19690371753;FOSL2:0.194039708211;TEF:0.190823623923;OCT4_SOX2{dimer}:0.189321694312;SRF:0.188393639591;POU3F1..4:0.088369978354;FOXL1:0.0879619224045;LMO2:0.083854518716;BACH2:0.0722326056821;GATA6:0.0633903183915;ATF2:0.0369205994754;REST:0.0209980941225;PATZ1:0.000874623762653;TLX2:-0.00738194191346;KLF4:-0.0169727968954;PAX4:-0.0328949276643;ZEB1:-0.060889573288;PRDM1:-0.0743973339175;CUX2:-0.106503218643;MAZ:-0.112639063104;TBX4,5:-0.14296748536;JUN:-0.15677309573;TFAP2{A,C}:-0.202552037504;FOS_FOS{B,L1}_JUN{B,D}:-0.226051933077;HNF4A_NR2F1,2:-0.24284066464;PDX1:-0.28702947269;FOXM1:-0.317994264195;IKZF1:-0.338389809202;SNAI1..3:-0.400404009822;ZNF148:-0.4960272547;POU2F1..3:-0.570438439836;NFATC1..3:-0.576263856637;HNF1A:-0.599453773481;HOX{A4,D4}:-0.634746782746;ONECUT1,2:-0.660209176974;RBPJ:-0.667148338493;MED-1{core}:-0.682123095199;XBP1:-0.693092936281;MTE{core}:-0.745817592272;GTF2I:-0.757130575523;PAX1,9:-0.776953552144;CRX:-0.798236908467;EGR1..3:-0.799786897681;ZNF238:-0.818309662955;PAX8:-0.842286595085;BREu{core}:-0.88194100321;GLI1..3:-0.906796920865;STAT5{A,B}:-0.957809474652;TFAP2B:-0.982381248502;ZNF384:-1.02687125702;DBP:-1.0287674324;ARID5B:-1.06079072399;RORA:-1.06143398557;ESR1:-1.06477836276;HOX{A5,B5}:-1.06953859225;HIC1:-1.19485644391;ZBTB6:-1.20354162266;ADNP_IRX_SIX_ZHX:-1.21031740018;SOX2:-1.3330737431;STAT1,3:-1.36311639068;CDC5L:-1.37205678877;LEF1_TCF7_TCF7L1,2:-1.47853076213;NHLH1,2:-1.48018976952;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.49044597765;RFX1:-1.49115153399;ZFP161:-1.58136066125;MEF2{A,B,C,D}:-1.58705116358;TEAD1:-1.62874248771;AR:-1.75343896704;FOXQ1:-1.77479026548;SOX5:-1.84389890192;SP1:-1.84444614842;SOX{8,9,10}:-1.84624588644;PBX1:-1.86135716551;PRRX1,2:-1.90654787472;NKX2-3_NKX2-5:-1.95030139337;MTF1:-1.96876160505;HAND1,2:-2.01551009658;E2F1..5:-2.04896136667;GZF1:-2.06208846523;TLX1..3_NFIC{dimer}:-2.08887999843;SOX17:-2.10469213467;LHX3,4:-2.14988541181;TP53:-2.17239016626;PAX5:-2.24932247089;TBP:-2.25957094205;TFDP1:-2.31644391404;PAX6:-2.68920481037;AHR_ARNT_ARNT2:-2.74122458822;NFY{A,B,C}:-2.83575482766;HES1:-2.84742066197;NANOG:-2.85754754827;ELK1,4_GABP{A,B1}:-2.896940219;VSX1,2:-2.90853283885;GFI1B:-3.0028891641;GFI1:-3.05795739079;MYBL2:-3.14700329347;GTF2A1,2:-3.19969203629;GCM1,2:-3.26626522186;HSF1,2:-3.28260981445;YY1:-3.44727897162;XCPE1{core}:-3.53032146234;HOX{A6,A7,B6,B7}:-3.83145771693;NRF1:-3.94477796684;bHLH_family:-4.09913422117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-4.16387853627;ZNF143:-4.28467424095 | |top_motifs=ZBTB16:4.57702921807;DMAP1_NCOR{1,2}_SMARC:3.92738260409;FOXD3:3.78824699616;NR1H4:3.61458066714;PITX1..3:3.50976091322;CEBPA,B_DDIT3:3.4129402884;FOXP3:3.38967384948;FOXA2:3.31503965973;SPI1:3.25790428878;BPTF:3.19971444848;SPIB:3.03268619922;CDX1,2,4:2.89267601785;HBP1_HMGB_SSRP1_UBTF:2.86765902133;NKX3-1:2.83356658164;TOPORS:2.63204182378;FOXO1,3,4:2.59711515023;T:2.5385125952;ATF5_CREB3:2.51807784641;FOXN1:2.51677368016;NKX3-2:2.51495125063;ESRRA:2.37749560203;FOX{F1,F2,J1}:2.37030820205;NFIL3:2.3315864306;ETS1,2:2.32787825452;ALX1:2.31413567064;ALX4:2.30845302713;RUNX1..3:2.16813773186;IKZF2:2.14547852646;TAL1_TCF{3,4,12}:2.04239992052;AIRE:1.97574630468;PPARG:1.92689990203;RREB1:1.82376331649;NFKB1_REL_RELA:1.79938516829;NFE2L1:1.78817631863;NFIX:1.77522690579;NKX2-2,8:1.76364853871;HLF:1.65512562792;HMX1:1.65457977162;EVI1:1.64418172479;NR6A1:1.54250195563;FOXP1:1.53308472068;HMGA1,2:1.41086558406;SPZ1:1.37604855085;RFX2..5_RFXANK_RFXAP:1.35161298679;GATA4:1.29060987555;HOXA9_MEIS1:1.28828071666;NANOG{mouse}:1.28169756129;TFCP2:1.25605399657;TGIF1:1.22732844202;NFE2L2:1.20915790329;MYFfamily:1.19323823608;SREBF1,2:1.14492271846;FOX{D1,D2}:1.11162359813;IRF7:1.10024886942;POU1F1:0.960266077182;PAX2:0.94199889413;EP300:0.908343904723;SMAD1..7,9:0.889117206999;FOX{I1,J2}:0.850289860192;RXR{A,B,G}:0.810130936778;IRF1,2:0.805177590215;NKX6-1,2:0.768836812846;ELF1,2,4:0.742288465954;ATF6:0.711973939512;ZNF423:0.709226863869;TFAP4:0.701529903223;MAFB:0.685511270978;STAT2,4,6:0.666109972964;NKX2-1,4:0.623358806631;EBF1:0.544755154176;MYB:0.519166086352;MZF1:0.441254256298;POU6F1:0.415595488787;ATF4:0.400976072152;HIF1A:0.3440019799;POU5F1:0.33103770506;RXRA_VDR{dimer}:0.327489731969;EN1,2:0.32358052298;NR3C1:0.316224830046;CREB1:0.312375877408;ZIC1..3:0.270994544378;NR5A1,2:0.264316570448;UFEwm:0.262739257508;MYOD1:0.244141884353;NFE2:0.239604679879;PAX3,7:0.19690371753;FOSL2:0.194039708211;TEF:0.190823623923;OCT4_SOX2{dimer}:0.189321694312;SRF:0.188393639591;POU3F1..4:0.088369978354;FOXL1:0.0879619224045;LMO2:0.083854518716;BACH2:0.0722326056821;GATA6:0.0633903183915;ATF2:0.0369205994754;REST:0.0209980941225;PATZ1:0.000874623762653;TLX2:-0.00738194191346;KLF4:-0.0169727968954;PAX4:-0.0328949276643;ZEB1:-0.060889573288;PRDM1:-0.0743973339175;CUX2:-0.106503218643;MAZ:-0.112639063104;TBX4,5:-0.14296748536;JUN:-0.15677309573;TFAP2{A,C}:-0.202552037504;FOS_FOS{B,L1}_JUN{B,D}:-0.226051933077;HNF4A_NR2F1,2:-0.24284066464;PDX1:-0.28702947269;FOXM1:-0.317994264195;IKZF1:-0.338389809202;SNAI1..3:-0.400404009822;ZNF148:-0.4960272547;POU2F1..3:-0.570438439836;NFATC1..3:-0.576263856637;HNF1A:-0.599453773481;HOX{A4,D4}:-0.634746782746;ONECUT1,2:-0.660209176974;RBPJ:-0.667148338493;MED-1{core}:-0.682123095199;XBP1:-0.693092936281;MTE{core}:-0.745817592272;GTF2I:-0.757130575523;PAX1,9:-0.776953552144;CRX:-0.798236908467;EGR1..3:-0.799786897681;ZNF238:-0.818309662955;PAX8:-0.842286595085;BREu{core}:-0.88194100321;GLI1..3:-0.906796920865;STAT5{A,B}:-0.957809474652;TFAP2B:-0.982381248502;ZNF384:-1.02687125702;DBP:-1.0287674324;ARID5B:-1.06079072399;RORA:-1.06143398557;ESR1:-1.06477836276;HOX{A5,B5}:-1.06953859225;HIC1:-1.19485644391;ZBTB6:-1.20354162266;ADNP_IRX_SIX_ZHX:-1.21031740018;SOX2:-1.3330737431;STAT1,3:-1.36311639068;CDC5L:-1.37205678877;LEF1_TCF7_TCF7L1,2:-1.47853076213;NHLH1,2:-1.48018976952;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.49044597765;RFX1:-1.49115153399;ZFP161:-1.58136066125;MEF2{A,B,C,D}:-1.58705116358;TEAD1:-1.62874248771;AR:-1.75343896704;FOXQ1:-1.77479026548;SOX5:-1.84389890192;SP1:-1.84444614842;SOX{8,9,10}:-1.84624588644;PBX1:-1.86135716551;PRRX1,2:-1.90654787472;NKX2-3_NKX2-5:-1.95030139337;MTF1:-1.96876160505;HAND1,2:-2.01551009658;E2F1..5:-2.04896136667;GZF1:-2.06208846523;TLX1..3_NFIC{dimer}:-2.08887999843;SOX17:-2.10469213467;LHX3,4:-2.14988541181;TP53:-2.17239016626;PAX5:-2.24932247089;TBP:-2.25957094205;TFDP1:-2.31644391404;PAX6:-2.68920481037;AHR_ARNT_ARNT2:-2.74122458822;NFY{A,B,C}:-2.83575482766;HES1:-2.84742066197;NANOG:-2.85754754827;ELK1,4_GABP{A,B1}:-2.896940219;VSX1,2:-2.90853283885;GFI1B:-3.0028891641;GFI1:-3.05795739079;MYBL2:-3.14700329347;GTF2A1,2:-3.19969203629;GCM1,2:-3.26626522186;HSF1,2:-3.28260981445;YY1:-3.44727897162;XCPE1{core}:-3.53032146234;HOX{A6,A7,B6,B7}:-3.83145771693;NRF1:-3.94477796684;bHLH_family:-4.09913422117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-4.16387853627;ZNF143:-4.28467424095 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11314-117C9;search_select_hide=table117:FF:11314-117C9 | |||
}} | }} |
Latest revision as of 16:32, 3 June 2020
Name: | Neutrophils, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11959 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11959
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11959
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0546 |
10 | 10 | 0.0256 |
100 | 100 | 0.85 |
101 | 101 | 0.257 |
102 | 102 | 0.979 |
103 | 103 | 0.213 |
104 | 104 | 0.687 |
105 | 105 | 0.452 |
106 | 106 | 3.8565e-4 |
107 | 107 | 0.0644 |
108 | 108 | 0.974 |
109 | 109 | 0.263 |
11 | 11 | 0.071 |
110 | 110 | 0.363 |
111 | 111 | 0.0497 |
112 | 112 | 0.172 |
113 | 113 | 0.445 |
114 | 114 | 0.0105 |
115 | 115 | 0.931 |
116 | 116 | 0.681 |
117 | 117 | 0.0326 |
118 | 118 | 0.11 |
119 | 119 | 0.0571 |
12 | 12 | 0.895 |
120 | 120 | 0.81 |
121 | 121 | 0.269 |
122 | 122 | 0.512 |
123 | 123 | 0.00154 |
124 | 124 | 0.438 |
125 | 125 | 0.0715 |
126 | 126 | 0.403 |
127 | 127 | 0.793 |
128 | 128 | 0.00193 |
129 | 129 | 0.309 |
13 | 13 | 0.499 |
130 | 130 | 0.247 |
131 | 131 | 0.914 |
132 | 132 | 0.532 |
133 | 133 | 0.604 |
134 | 134 | 0.53 |
135 | 135 | 0.218 |
136 | 136 | 0.428 |
137 | 137 | 0.0122 |
138 | 138 | 0.0775 |
139 | 139 | 0.0295 |
14 | 14 | 0.35 |
140 | 140 | 0.113 |
141 | 141 | 0.277 |
142 | 142 | 0.674 |
143 | 143 | 0.0295 |
144 | 144 | 0.794 |
145 | 145 | 0.32 |
146 | 146 | 0.438 |
147 | 147 | 0.996 |
148 | 148 | 0.0514 |
149 | 149 | 0.148 |
15 | 15 | 0.0572 |
150 | 150 | 0.495 |
151 | 151 | 0.243 |
152 | 152 | 0.283 |
153 | 153 | 0.387 |
154 | 154 | 0.614 |
155 | 155 | 0.112 |
156 | 156 | 0.975 |
157 | 157 | 0.974 |
158 | 158 | 0.0418 |
159 | 159 | 0.725 |
16 | 16 | 0.272 |
160 | 160 | 0.369 |
161 | 161 | 0.623 |
162 | 162 | 0.922 |
163 | 163 | 0.466 |
164 | 164 | 0.122 |
165 | 165 | 0.229 |
166 | 166 | 0.537 |
167 | 167 | 0.146 |
168 | 168 | 0.861 |
169 | 169 | 0.0266 |
17 | 17 | 0.178 |
18 | 18 | 0.0809 |
19 | 19 | 0.194 |
2 | 2 | 0.638 |
20 | 20 | 0.794 |
21 | 21 | 0.42 |
22 | 22 | 0.33 |
23 | 23 | 0.0116 |
24 | 24 | 0.548 |
25 | 25 | 0.458 |
26 | 26 | 0.0712 |
27 | 27 | 0.416 |
28 | 28 | 0.461 |
29 | 29 | 0.396 |
3 | 3 | 0.0991 |
30 | 30 | 0.639 |
31 | 31 | 0.582 |
32 | 32 | 0.318 |
33 | 33 | 0.431 |
34 | 34 | 0.661 |
35 | 35 | 0.0575 |
36 | 36 | 0.258 |
37 | 37 | 0.159 |
38 | 38 | 0.268 |
39 | 39 | 0.733 |
4 | 4 | 0.633 |
40 | 40 | 0.592 |
41 | 41 | 0.107 |
42 | 42 | 0.368 |
43 | 43 | 0.0822 |
44 | 44 | 0.365 |
45 | 45 | 0.653 |
46 | 46 | 0.093 |
47 | 47 | 0.256 |
48 | 48 | 0.333 |
49 | 49 | 0.0822 |
5 | 5 | 0.148 |
50 | 50 | 0.884 |
51 | 51 | 0.318 |
52 | 52 | 0.137 |
53 | 53 | 0.246 |
54 | 54 | 0.286 |
55 | 55 | 0.323 |
56 | 56 | 0.426 |
57 | 57 | 0.544 |
58 | 58 | 0.151 |
59 | 59 | 0.0945 |
6 | 6 | 0.547 |
60 | 60 | 0.0174 |
61 | 61 | 0.433 |
62 | 62 | 0.0305 |
63 | 63 | 0.271 |
64 | 64 | 0.36 |
65 | 65 | 0.148 |
66 | 66 | 0.249 |
67 | 67 | 0.312 |
68 | 68 | 0.878 |
69 | 69 | 0.581 |
7 | 7 | 0.318 |
70 | 70 | 0.0252 |
71 | 71 | 0.0478 |
72 | 72 | 0.63 |
73 | 73 | 0.384 |
74 | 74 | 0.581 |
75 | 75 | 0.168 |
76 | 76 | 0.355 |
77 | 77 | 0.305 |
78 | 78 | 0.22 |
79 | 79 | 0.302 |
8 | 8 | 0.319 |
80 | 80 | 0.441 |
81 | 81 | 0.259 |
82 | 82 | 0.0267 |
83 | 83 | 0.99 |
84 | 84 | 0.558 |
85 | 85 | 0.0184 |
86 | 86 | 0.0689 |
87 | 87 | 0.913 |
88 | 88 | 0.735 |
89 | 89 | 0.133 |
9 | 9 | 0.325 |
90 | 90 | 0.0688 |
91 | 91 | 0.118 |
92 | 92 | 0.0666 |
93 | 93 | 0.674 |
94 | 94 | 0.0192 |
95 | 95 | 0.728 |
96 | 96 | 0.123 |
97 | 97 | 0.76 |
98 | 98 | 0.0889 |
99 | 99 | 0.427 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11959
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000122 human neutrophil sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000775 (neutrophil)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000122 (human neutrophil sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)