FFCP PHASE1:Hg19::chr1:45988484..45988500,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:45988484..45988500,-
|short_description=p4@PRDX1
|description=CAGE_peak_4_at_PRDX1_5end
|association_with_transcript=61bp_to_NM_001202431_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5052 | |EntrezGene=5052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9352 | |HGNC=9352 | ||
|TSSclassifier=strong | |||
|UniProt=Q06830 | |UniProt=Q06830 | ||
|association_with_transcript=61bp_to_NM_001202431_5end | |||
|cluster_id=chr1:45988484..45988500,- | |||
|description=CAGE_peak_4_at_PRDX1_5end | |||
|id=chr1:45988484..45988500,- | |||
|ontology_enrichment_celltype=CL:0000066!1.80e-26!254;CL:0000039!8.89e-10!7;CL:0000586!8.89e-10!7;CL:0000223!4.12e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.56e-20;7!CL:0000586;3.56e-20;7!CL:0000082;9.49e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.82e-20,7;CL:0000586,3.82e-20,7;CL:0000066,8.97e-18,253;CL:0000082,9.25e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.92e-28;29!UBERON:0001041;1.27e-08;30 | |||
|ontology_enrichment_disease=DOID:305!5.47e-40!106;DOID:0050687!6.67e-30!143;DOID:162!1.72e-17!235;DOID:14566!1.02e-16!239;DOID:0050615!5.21e-09!16;DOID:1324!8.98e-08!15 | |||
|ontology_enrichment_disease_v019=DOID:305;5.16e-12;106!DOID:0050615;5.95e-11;16!DOID:1324;1.00e-08;15!DOID:0050687;4.51e-08;143!DOID:3095;6.07e-08;22!DOID:2994;6.07e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.75e-42,106;DOID:0050687,1.46e-34,143;DOID:162,5.02e-21,235;DOID:14566,2.17e-20,239;DOID:0050615,6.06e-11,16;DOID:1324,9.70e-09,15;DOID:3095,6.54e-08,22;DOID:2994,6.54e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.88e-17!9;UBERON:0001041!2.01e-15!98;UBERON:0000072!3.38e-14!46;UBERON:0008947!9.91e-14!38;UBERON:0003258!9.91e-14!38;UBERON:0000077!1.62e-13!130;UBERON:0001004!2.71e-13!72;UBERON:0000065!1.85e-12!53;UBERON:0001007!3.67e-12!155;UBERON:0001555!3.67e-12!155;UBERON:0007026!3.67e-12!155;UBERON:0004119!4.72e-12!169;UBERON:0000925!4.72e-12!169;UBERON:0006595!4.72e-12!169;UBERON:0001557!5.28e-12!19;UBERON:0004921!6.83e-12!129;UBERON:0004185!6.83e-12!129;UBERON:0000466!3.59e-10!126;UBERON:0005177!2.78e-09!107;UBERON:0000464!1.33e-08!104;UBERON:0003104!6.52e-08!238;UBERON:0009142!6.52e-08!238;UBERON:0005631!1.14e-07!14;UBERON:0000158!1.14e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.16e-36;9!UBERON:0001557;4.16e-36;9!UBERON:0000072;1.11e-17;37!UBERON:0000065;3.51e-13;44!UBERON:0001004;3.09e-09;65!UBERON:0000473;2.26e-08;8!UBERON:0004807;1.30e-07;22!UBERON:0004802;9.49e-07;19!UBERON:0000115;9.49e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.03e-36,9;UBERON:0008947,2.22e-20,38;UBERON:0003258,2.22e-20,38;UBERON:0001557,7.61e-20,19;UBERON:0000072,4.41e-18,47;UBERON:0000065,3.13e-15,54;UBERON:0001004,1.04e-14,74;UBERON:0001041,1.33e-14,87;UBERON:0004921,1.97e-10,118;UBERON:0001007,2.01e-09,145;UBERON:0001555,2.01e-09,145;UBERON:0007026,2.01e-09,145;UBERON:0000473,2.10e-08,8;UBERON:0004119,4.86e-08,160;UBERON:0000925,4.86e-08,160;UBERON:0006595,4.86e-08,160;UBERON:0001048,1.83e-07,160;UBERON:0004802,9.25e-07,19;UBERON:0000115,9.25e-07,19 | |||
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| ||
|short_description=p4@PRDX1 | |||
}} | }} |
Latest revision as of 07:54, 18 September 2015
Short description: | p4@PRDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRDX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 61bp_to_NM_001202431_5end |
EntrezGene: | PRDX1 |
HGNC: | 9352 |
UniProt: | Q06830 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.82e-20 | 7 |
germ cell | 3.82e-20 | 7 |
epithelial cell | 8.97e-18 | 253 |
epithelial cell of lung | 9.25e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.03e-36 | 9 |
respiratory primordium | 2.22e-20 | 38 |
endoderm of foregut | 2.22e-20 | 38 |
upper respiratory tract | 7.61e-20 | 19 |
segment of respiratory tract | 4.41e-18 | 47 |
respiratory tract | 3.13e-15 | 54 |
respiratory system | 1.04e-14 | 74 |
foregut | 1.33e-14 | 87 |
subdivision of digestive tract | 1.97e-10 | 118 |
digestive system | 2.01e-09 | 145 |
digestive tract | 2.01e-09 | 145 |
primitive gut | 2.01e-09 | 145 |
testis | 2.10e-08 | 8 |
endoderm-derived structure | 4.86e-08 | 160 |
endoderm | 4.86e-08 | 160 |
presumptive endoderm | 4.86e-08 | 160 |
primordium | 1.83e-07 | 160 |
respiratory tract epithelium | 9.25e-07 | 19 |
lung epithelium | 9.25e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.75e-42 | 106 |
cell type cancer | 1.46e-34 | 143 |
cancer | 5.02e-21 | 235 |
disease of cellular proliferation | 2.17e-20 | 239 |
respiratory system cancer | 6.06e-11 | 16 |
lung cancer | 9.70e-09 | 15 |
germ cell and embryonal cancer | 6.54e-08 | 22 |
germ cell cancer | 6.54e-08 | 22 |