FFCP PHASE1:Hg19::chr20:49126942..49126956,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:49126942..49126956,+
|short_description=p2@PTPN1
|description=CAGE_peak_2_at_PTPN1_5end
|association_with_transcript=22bp_to_ENST00000541713_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5770 | |EntrezGene=5770 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9642 | |HGNC=9642 | ||
|TSSclassifier=strong | |||
|UniProt=B4DSN5 | |UniProt=B4DSN5 | ||
|association_with_transcript=22bp_to_ENST00000541713_5end | |||
|cluster_id=chr20:49126942..49126956,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_PTPN1_5end | |||
|id=chr20:49126942..49126956,+ | |||
|ontology_enrichment_celltype=CL:0000738!8.67e-21!140;CL:0002057!8.53e-20!42;CL:0000860!7.38e-17!45;CL:0000766!2.26e-15!76;CL:0000557!1.07e-14!71;CL:0000037!2.18e-14!172;CL:0000566!2.18e-14!172;CL:0002031!2.68e-14!124;CL:0002087!4.61e-14!119;CL:0000988!4.21e-13!182;CL:0002032!6.55e-13!165;CL:0000837!6.55e-13!165;CL:0002009!1.42e-12!65;CL:0000839!4.09e-12!70;CL:0002194!9.23e-12!63;CL:0000576!9.23e-12!63;CL:0000040!9.23e-12!63;CL:0000559!9.23e-12!63;CL:0000144!1.10e-11!625;CL:0000763!2.48e-10!112;CL:0000049!2.48e-10!112;CL:0000063!2.48e-10!578;CL:0002371!6.37e-10!591;CL:0000012!1.81e-08!682;CL:0000548!4.14e-08!679;CL:0000004!4.14e-08!679;CL:0000255!4.14e-08!679;CL:0002139!1.51e-07!24;CL:0000213!1.93e-07!57;CL:0000215!1.93e-07!57;CL:0000003!9.80e-07!722;CL:0000076!9.98e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.45e-17;33!CL:0002057;2.45e-17;33!CL:0000473;6.11e-15;39!CL:0000234;6.11e-15;39!CL:0000576;2.72e-09;48!CL:0000766;5.45e-09;69!CL:0002139;1.24e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.55e-23,136;CL:0000473,1.98e-20,48;CL:0000234,1.98e-20,48;CL:0000860,4.43e-20,42;CL:0002057,4.43e-20,42;CL:0000766,2.02e-18,72;CL:0000557,1.29e-17,67;CL:0000037,7.70e-17,168;CL:0002031,1.39e-16,120;CL:0002087,3.05e-16,115;CL:0002009,2.45e-15,61;CL:0002032,3.04e-15,161;CL:0000837,3.04e-15,161;CL:0000988,6.32e-15,177;CL:0000839,7.75e-15,66;CL:0002194,1.90e-14,59;CL:0000576,1.90e-14,59;CL:0000040,1.90e-14,59;CL:0000559,1.90e-14,59;CL:0000763,1.05e-12,108;CL:0000049,1.05e-12,108;CL:0000213,6.39e-08,58;CL:0000215,6.39e-08,58;CL:0002139,1.22e-07,24;CL:0000723,3.08e-07,433;CL:0000048,5.13e-07,427;CL:0000076,6.17e-07,63;CL:0000134,7.17e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;7.45e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.40e-19!112;UBERON:0002405!9.03e-18!115;UBERON:0002390!6.47e-16!102;UBERON:0003061!6.47e-16!102;UBERON:0002371!3.57e-15!80;UBERON:0003081!1.39e-13!216;UBERON:0001474!2.54e-13!86;UBERON:0004765!1.67e-10!101;UBERON:0001434!1.67e-10!101;UBERON:0002204!8.46e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,6.35e-23,93;UBERON:0002193,2.28e-21,108;UBERON:0002390,2.89e-18,98;UBERON:0003061,2.89e-18,98;UBERON:0002371,6.04e-18,76;UBERON:0003081,6.79e-17,203;UBERON:0001474,1.11e-15,82;UBERON:0004765,1.49e-14,90;UBERON:0001434,8.95e-12,100;UBERON:0000926,7.74e-11,315;UBERON:0004120,7.74e-11,315;UBERON:0006603,7.74e-11,315;UBERON:0002204,3.10e-08,167;UBERON:0002049,9.86e-07,78;UBERON:0007798,9.86e-07,78 | |||
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| ||
|short_description=p2@PTPN1 | |||
}} | }} |
Latest revision as of 21:49, 16 September 2015
Short description: | p2@PTPN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PTPN1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 22bp_to_ENST00000541713_5end |
EntrezGene: | PTPN1 |
HGNC: | 9642 |
UniProt: | B4DSN5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.55e-23 | 136 |
defensive cell | 1.98e-20 | 48 |
phagocyte | 1.98e-20 | 48 |
classical monocyte | 4.43e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.43e-20 | 42 |
myeloid leukocyte | 2.02e-18 | 72 |
granulocyte monocyte progenitor cell | 1.29e-17 | 67 |
hematopoietic stem cell | 7.70e-17 | 168 |
hematopoietic lineage restricted progenitor cell | 1.39e-16 | 120 |
nongranular leukocyte | 3.05e-16 | 115 |
macrophage dendritic cell progenitor | 2.45e-15 | 61 |
hematopoietic oligopotent progenitor cell | 3.04e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.04e-15 | 161 |
hematopoietic cell | 6.32e-15 | 177 |
myeloid lineage restricted progenitor cell | 7.75e-15 | 66 |
monopoietic cell | 1.90e-14 | 59 |
monocyte | 1.90e-14 | 59 |
monoblast | 1.90e-14 | 59 |
promonocyte | 1.90e-14 | 59 |
myeloid cell | 1.05e-12 | 108 |
common myeloid progenitor | 1.05e-12 | 108 |
lining cell | 6.39e-08 | 58 |
barrier cell | 6.39e-08 | 58 |
endothelial cell of vascular tree | 1.22e-07 | 24 |
somatic stem cell | 3.08e-07 | 433 |
multi fate stem cell | 5.13e-07 | 427 |
squamous epithelial cell | 6.17e-07 | 63 |
mesenchymal cell | 7.17e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
immune system | 6.35e-23 | 93 |
hemolymphoid system | 2.28e-21 | 108 |
hematopoietic system | 2.89e-18 | 98 |
blood island | 2.89e-18 | 98 |
bone marrow | 6.04e-18 | 76 |
lateral plate mesoderm | 6.79e-17 | 203 |
bone element | 1.11e-15 | 82 |
skeletal element | 1.49e-14 | 90 |
skeletal system | 8.95e-12 | 100 |
mesoderm | 7.74e-11 | 315 |
mesoderm-derived structure | 7.74e-11 | 315 |
presumptive mesoderm | 7.74e-11 | 315 |
musculoskeletal system | 3.10e-08 | 167 |
vasculature | 9.86e-07 | 78 |
vascular system | 9.86e-07 | 78 |