FFCP PHASE1:Hg19::chr7:90032821..90032830,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:90032821..90032830,+
|short_description=p3@CLDN12
|description=CAGE_peak_3_at_CLDN12_5end
|association_with_transcript=-2bp_to_ENST00000483862_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9069 | |EntrezGene=9069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2034 | |HGNC=2034 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000483862_5end | |||
|cluster_id=chr7:90032821..90032830,+ | |||
|description=CAGE_peak_3_at_CLDN12_5end | |||
|id=chr7:90032821..90032830,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.38e-10!254;CL:0000223!1.05e-08!59;CL:0002076!1.89e-07!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,2.00e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.07e-19!143;DOID:305!1.49e-15!106;DOID:14566!4.83e-10!239;DOID:162!1.28e-09!235 | |||
|ontology_enrichment_disease_v019=DOID:3119;2.33e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.19e-08,106;DOID:0050687,5.95e-08,143;DOID:3119,3.21e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!6.67e-13!365;UBERON:0000481!5.31e-12!347;UBERON:0001017!3.77e-11!82;UBERON:0000922!5.51e-11!612;UBERON:0000468!8.40e-11!659;UBERON:0000073!2.50e-10!94;UBERON:0001016!2.50e-10!94;UBERON:0005743!4.41e-10!86;UBERON:0002780!6.17e-10!41;UBERON:0001890!6.17e-10!41;UBERON:0006240!6.17e-10!41;UBERON:0000467!6.94e-10!625;UBERON:0004119!9.09e-10!169;UBERON:0000925!9.09e-10!169;UBERON:0006595!9.09e-10!169;UBERON:0002050!1.02e-09!605;UBERON:0005423!1.02e-09!605;UBERON:0000480!1.06e-09!626;UBERON:0000924!1.19e-09!173;UBERON:0006601!1.19e-09!173;UBERON:0000923!1.32e-09!604;UBERON:0005291!1.32e-09!604;UBERON:0006598!1.32e-09!604;UBERON:0002532!1.32e-09!604;UBERON:0001049!1.77e-09!57;UBERON:0005068!1.77e-09!57;UBERON:0006241!1.77e-09!57;UBERON:0007135!1.77e-09!57;UBERON:0004121!1.85e-09!169;UBERON:0001007!1.86e-09!155;UBERON:0001555!1.86e-09!155;UBERON:0007026!1.86e-09!155;UBERON:0003080!2.47e-09!42;UBERON:0000955!2.99e-09!69;UBERON:0006238!2.99e-09!69;UBERON:0000062!7.85e-09!511;UBERON:0000033!8.84e-09!123;UBERON:0000153!1.03e-08!129;UBERON:0007811!1.03e-08!129;UBERON:0007023!1.14e-08!115;UBERON:0002020!2.55e-08!34;UBERON:0003528!2.55e-08!34;UBERON:0001893!3.61e-08!34;UBERON:0001869!3.76e-08!32;UBERON:0004921!8.43e-08!129;UBERON:0004185!8.43e-08!129;UBERON:0002791!1.02e-07!33;UBERON:0002616!2.54e-07!59;UBERON:0004111!6.23e-07!241;UBERON:0000483!6.46e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.98e-09;22!UBERON:0003296;1.18e-08;4!UBERON:0010133;1.18e-08;4!UBERON:0001950;4.60e-08;20!UBERON:0003350;9.27e-08;8!UBERON:0002619;3.74e-07;22!UBERON:0000160;6.29e-07;17!UBERON:0001893;9.75e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.36e-14,223;UBERON:0001049,1.08e-09,56;UBERON:0005068,1.08e-09,56;UBERON:0006241,1.08e-09,56;UBERON:0007135,1.08e-09,56;UBERON:0002780,1.41e-09,41;UBERON:0001890,1.41e-09,41;UBERON:0003080,1.41e-09,41;UBERON:0006240,1.41e-09,41;UBERON:0001017,1.54e-09,81;UBERON:0000073,2.50e-09,53;UBERON:0002616,2.50e-09,53;UBERON:0001016,8.33e-09,89;UBERON:0003296,9.07e-09,4;UBERON:0010133,9.07e-09,4;UBERON:0003350,5.91e-08,8;UBERON:0001950,7.96e-08,20;UBERON:0000955,9.13e-08,68;UBERON:0006238,9.13e-08,68;UBERON:0005409,1.87e-07,25;UBERON:0004119,2.65e-07,160;UBERON:0000925,2.65e-07,160;UBERON:0006595,2.65e-07,160;UBERON:0001869,2.67e-07,32;UBERON:0002619,6.08e-07,22;UBERON:0000160,7.71e-07,17 | |||
|phase1_expression=0.181678379270557,0.214100523890983,1.12763523276777,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0.436882744260345,0,0.495065411840187,0,0,0,0,0.487932798790507,0,0,0,0.572471974262113,0,0.376627918784408,0.152826811495903,0.164201178899891,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0.795285947051099,0,0.567208902984407,0.221729397462564,0.614843499851882,0.982343066232845,0.364295288292542,0,0.324547393654683,0,0.26591592103773,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0.760272105718513,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.872188104285069,0,0.379891534993739,0.529636723252875,0.286836620748814,0.709336764396714,0,0,0.24666754841716,0.622422070799533,0.134710672069688,0.163461903113459,0,0,0,0,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0.204154171254893,0.122834317311768,0.103325781175765,1.18800285728205,0.494533858557114,0,0,0.336672227908132,0,0.554128230968366,0,0.30648779579902,0,0.567160915800105,0.358779271377724,0,0.635795703478686,0,0.309157587715317,0.257640540045629,0,1.18143432568886,0.194874010322397,0.504867548488229,0.184099797284599,0.161646056818812,0.355009592516614,0.201504196455281,0,1.35282597214308,1.90922284413584,1.14721838155602,0.487894824518382,0.530119073285941,0.348581828608555,0.621966330092223,2.27088765788066,1.09493207722749,0,0,0,0.464367928031979,0.721879481669586,0.709840800239063,0.505754070234305,0.723033089650446,0.441175890929576,0,0.237270619111097,0.134831308160164,0.784885860501384,0.769494313892781,0,0,0,0,1.26755034821831,0.982827216677626,0,0,1.35287282397425,0.171567810298526,0.768251997860379,0,0.703702806881416,0.462942225792648,0,0,0,0.34779121492523,0.587043471179108,0.144366447761074,0,0,0,0,0.246217006087397,0.234004265139238,0,1.87467667973554,1.17587489739202,1.27597587518148,0.985143749731331,0.871901815541886,0,0,0,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0.600686115687835,0,0,0,0.2933531432838,0.387815147273333,0,0,0,1.04007436911366,0,0,0,0.142977993658148,0,0,0.65147236858747,0,0,0.602878754119172,0.871533458600294,0.499864955910285,0,0,0,0.239624855491583,0,0,1.01346914667305,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0.773288812777695,1.17261385734044,1.27587750330633,0,0,0,0.36807447515742,0.500170521059677,0.271265023699736,0.623912584592421,0,0.630809660135739,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.206768026122887,0,0,0,0,0,0.496215615637554,0.153461973288062,0,0.384417447767103,0.511707249066704,0.160853921143607,0,0.154209693802656,0.355123450626254,0.328508624055237,0,0.348631135379878,0.966875596732978,0.802025881213139,1.93370076765382,0.34444334449382,0.182091168006717,0.262248829918848,0,1.38627606787947,0,0,0.73886140225013,0,0,0.215915916102139,1.54227252690289,0,0.501689773854853,0.509752546090077,0,0.447749509444357,0,0,0,0,0,1.13345112812495,0.27470839445503,0.330037999682352,1.72279661398852,0,0,0.580024309752732,0,0,0.413509717453592,0.107420244868274,0.290033387828457,0.511359764496605,0.890320356467374,1.65284915360978,1.92190067365106,1.53135254993501,1.31505115112215,0.464845549297286,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0.74129687641568,0.143124886741991,0,0.316379424718726,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0.606547444719948,1.58510321173008,0.842516912477962,0.48763373908959,0.974853958525138,1.05650146756755,0.136499911407986,0.565621727814851,0,0,1.32687795048244,0.438450885253763,0,0.655894752046633,0.608731130888112,0.6196469961995,0,0.286822704408103,0.0982490410131212,0.7133421029625,0,0,0.658589785919804,0,0,0.769776901804097,0.670302275535787,0,1.03558180854457,0.86101074534246,0,0,1.60806380144872,0,0,0,0,0,0,0,0,0.534120355637366,0,0.245040215981032,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0.278406173895242,0,0,0.66614393599564,0,1.49712432326576,0.293016358543788,0.121360521749513,0.334330152832435,0.852408440419239,0,0.296964680832639,0.307160702099232,2.98244294329889,0.422008249231538,0.222617410045812,0,1.05562704063997,0.19924798825107,0.552567831062295,2.01546198283421,0.715880777515084,0,0.622079175323615,1.16828856491525,2.14825409610731,0,0.295930216910801,0,0,1.93866549219044,0.834912883456661,1.99613798001194,0,0.699679999969566,0,1.4793148277115,0.254253650292766,0.236387681767936,1.03423011972439,0.583209226766509,0.520874984799877,0.885741385813839,0.844175070377856,0,1.43753037910592,0,0.438770794307945,0.762569244632931,0.41827123283581,0.153900517007594,0.113942055847001,0.46112780877612,0.538545866458633,0.325942115766024,0.638002319463839,0.366390373607449,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,1.47698645169619,0.489698424477443,1.69623685720729,0.432777279484182,2.9857857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| ||
|short_description=p3@CLDN12 | |||
}} | }} |
Latest revision as of 22:27, 19 September 2015
Short description: | p3@CLDN12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CLDN12_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_ENST00000483862_5end |
EntrezGene: | CLDN12 |
HGNC: | 2034 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 2.00e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 2.36e-14 | 223 |
neural tube | 1.08e-09 | 56 |
neural rod | 1.08e-09 | 56 |
future spinal cord | 1.08e-09 | 56 |
neural keel | 1.08e-09 | 56 |
regional part of forebrain | 1.41e-09 | 41 |
forebrain | 1.41e-09 | 41 |
anterior neural tube | 1.41e-09 | 41 |
future forebrain | 1.41e-09 | 41 |
central nervous system | 1.54e-09 | 81 |
regional part of nervous system | 2.50e-09 | 53 |
regional part of brain | 2.50e-09 | 53 |
nervous system | 8.33e-09 | 89 |
gland of diencephalon | 9.07e-09 | 4 |
neuroendocrine gland | 9.07e-09 | 4 |
epithelium of mucosa | 5.91e-08 | 8 |
neocortex | 7.96e-08 | 20 |
brain | 9.13e-08 | 68 |
future brain | 9.13e-08 | 68 |
gastrointestinal system | 1.87e-07 | 25 |
endoderm-derived structure | 2.65e-07 | 160 |
endoderm | 2.65e-07 | 160 |
presumptive endoderm | 2.65e-07 | 160 |
cerebral hemisphere | 2.67e-07 | 32 |
regional part of cerebral cortex | 6.08e-07 | 22 |
intestine | 7.71e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.19e-08 | 106 |
cell type cancer | 5.95e-08 | 143 |
gastrointestinal system cancer | 3.21e-07 | 14 |