FFCP PHASE1:Hg19::chr12:120554534..120554585,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11021 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9774 | |||
|TSSclassifier=strong | |||
|UniProt=B4DTA6,B4E390,F5H157 | |||
|association_with_transcript=0bp_to_ENST00000427416,ENST00000534951,ENST00000538903,ENST00000540803_5end | |||
|cluster_id=chr12:120554534..120554585,- | |||
|description=CAGE_peak_1_at_RAB35_5end | |||
|id=chr12:120554534..120554585,- | |||
|ontology_enrichment_celltype=CL:0002371!1.95e-26!591;CL:0000766!2.93e-26!76;CL:0000144!8.49e-25!625;CL:0000557!2.69e-21!71;CL:0002009!2.62e-20!65;CL:0002194!4.10e-20!63;CL:0000576!4.10e-20!63;CL:0000040!4.10e-20!63;CL:0000559!4.10e-20!63;CL:0000839!5.00e-20!70;CL:0000548!8.69e-18!679;CL:0000004!8.69e-18!679;CL:0000255!8.69e-18!679;CL:0000003!2.66e-17!722;CL:0000012!3.53e-17!682;CL:0002057!5.21e-17!42;CL:0000723!1.81e-16!436;CL:0000860!3.39e-16!45;CL:0000063!4.89e-16!578;CL:0000048!7.73e-16!430;CL:0000738!2.42e-15!140;CL:0000763!3.23e-15!112;CL:0000049!3.23e-15!112;CL:0000034!7.56e-15!444;CL:0002320!3.08e-13!365;CL:0000134!5.68e-13!358;CL:0000213!1.03e-12!57;CL:0000215!1.03e-12!57;CL:0000222!3.45e-12!119;CL:0002031!1.48e-11!124;CL:0000115!2.81e-11!35;CL:0002087!1.12e-10!119;CL:0002078!3.73e-10!44;CL:0002032!5.07e-10!165;CL:0000837!5.07e-10!165;CL:0000219!5.83e-10!390;CL:0000988!3.77e-09!182;CL:0000037!5.06e-09!172;CL:0000566!5.06e-09!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.38e-16;33!CL:0002057;1.38e-16;33!CL:0000473;1.76e-16;39!CL:0000234;1.76e-16;39!CL:0000576;2.77e-12;48!CL:0000766;8.64e-12;69!CL:0000115;9.30e-10;36!CL:0000213;1.67e-07;58!CL:0000215;1.67e-07;58!CL:0002078;2.04e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.71e-28,72;CL:0000557,8.34e-23,67;CL:0002009,7.05e-22,61;CL:0002194,1.02e-21,59;CL:0000576,1.02e-21,59;CL:0000040,1.02e-21,59;CL:0000559,1.02e-21,59;CL:0000839,1.80e-21,66;CL:0000473,4.40e-20,48;CL:0000234,4.40e-20,48;CL:0000860,5.21e-17,42;CL:0002057,5.21e-17,42;CL:0000723,2.02e-16,433;CL:0000763,5.99e-16,108;CL:0000049,5.99e-16,108;CL:0000738,6.03e-16,136;CL:0000048,8.52e-16,427;CL:0000034,8.41e-15,441;CL:0002320,3.77e-13,361;CL:0000134,6.88e-13,354;CL:0000213,1.15e-12,58;CL:0000215,1.15e-12,58;CL:0000222,3.02e-12,121;CL:0002031,4.41e-12,120;CL:0002087,3.47e-11,115;CL:0000115,3.56e-11,36;CL:0002032,2.18e-10,161;CL:0000837,2.18e-10,161;CL:0002078,4.18e-10,45;CL:0000219,7.14e-10,386;CL:0000988,1.98e-09,177;CL:0000037,2.40e-09,168 | |||
|ontology_enrichment_development_v019=CL:0002057;9.37e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.10e-30!216;UBERON:0002193!7.72e-23!112;UBERON:0002390!3.48e-21!102;UBERON:0003061!3.48e-21!102;UBERON:0002371!1.12e-19!80;UBERON:0002405!3.49e-18!115;UBERON:0001474!3.88e-17!86;UBERON:0004765!1.14e-16!101;UBERON:0001434!1.14e-16!101;UBERON:0002204!5.39e-16!167;UBERON:0002384!1.16e-11!375;UBERON:0000926!1.15e-10!448;UBERON:0004120!1.15e-10!448;UBERON:0006603!1.15e-10!448;UBERON:0000055!9.08e-08!69;UBERON:0004872!9.77e-08!84;UBERON:0004535!1.17e-07!110;UBERON:0002049!1.22e-07!79;UBERON:0007798!1.22e-07!79;UBERON:0001009!3.43e-07!113;UBERON:0001981!5.16e-07!60;UBERON:0007500!5.16e-07!60;UBERON:0004537!5.16e-07!60;UBERON:0006965!5.16e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.69e-29,203;UBERON:0002193,6.96e-24,108;UBERON:0002405,2.37e-23,93;UBERON:0002390,2.98e-22,98;UBERON:0003061,2.98e-22,98;UBERON:0002371,6.22e-21,76;UBERON:0000926,2.29e-19,315;UBERON:0004120,2.29e-19,315;UBERON:0006603,2.29e-19,315;UBERON:0001474,3.58e-18,82;UBERON:0001434,2.14e-17,100;UBERON:0004765,5.63e-17,90;UBERON:0002204,1.40e-16,167;UBERON:0002384,1.42e-11,371;UBERON:0000055,3.40e-08,68;UBERON:0004872,4.09e-08,83;UBERON:0002049,4.97e-08,78;UBERON:0007798,4.97e-08,78;UBERON:0004535,5.58e-08,109;UBERON:0001009,1.70e-07,112;UBERON:0007500,1.91e-07,59;UBERON:0001981,1.91e-07,59;UBERON:0004537,1.91e-07,59;UBERON:0006965,1.91e-07,59 | |||
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| |||
|short_description=p1@RAB35 | |||
}} |
Latest revision as of 19:18, 16 September 2015
Short description: | p1@RAB35 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB35_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000427416, ENST00000534951, ENST00000538903, ENST00000540803_5end |
EntrezGene: | RAB35 |
HGNC: | 9774 |
UniProt: | B4DTA6B4E390F5H157 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.69e-29 | 203 |
hemolymphoid system | 6.96e-24 | 108 |
immune system | 2.37e-23 | 93 |
hematopoietic system | 2.98e-22 | 98 |
blood island | 2.98e-22 | 98 |
bone marrow | 6.22e-21 | 76 |
mesoderm | 2.29e-19 | 315 |
mesoderm-derived structure | 2.29e-19 | 315 |
presumptive mesoderm | 2.29e-19 | 315 |
bone element | 3.58e-18 | 82 |
skeletal system | 2.14e-17 | 100 |
skeletal element | 5.63e-17 | 90 |
musculoskeletal system | 1.40e-16 | 167 |
connective tissue | 1.42e-11 | 371 |
vessel | 3.40e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 4.09e-08 | 83 |
vasculature | 4.97e-08 | 78 |
vascular system | 4.97e-08 | 78 |
cardiovascular system | 5.58e-08 | 109 |
circulatory system | 1.70e-07 | 112 |
epithelial tube open at both ends | 1.91e-07 | 59 |
blood vessel | 1.91e-07 | 59 |
blood vasculature | 1.91e-07 | 59 |
vascular cord | 1.91e-07 | 59 |