FFCP PHASE1:Hg19::chr19:18496957..18496977,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9518 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30142 | |||
|TSSclassifier=strong | |||
|UniProt=Q99988 | |||
|association_with_transcript=0bp_to_ENST00000252809,NM_004864,uc002niv.2_5end | |||
|cluster_id=chr19:18496957..18496977,+ | |||
|coexpression_cluster_id=C1813 | |||
|description=CAGE_peak_1_at_GDF15_5end | |||
|id=chr19:18496957..18496977,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.01e-30!254;CL:0000220!7.54e-24!246;CL:0002321!8.42e-24!248;CL:0000222!3.09e-19!119;CL:0000548!6.20e-14!679;CL:0000004!6.20e-14!679;CL:0000255!6.20e-14!679;CL:0000012!6.94e-13!682;CL:0002139!6.26e-12!24;CL:0000055!7.16e-12!180;CL:0002078!1.07e-11!44;CL:0000115!2.18e-11!35;CL:0000213!2.75e-11!57;CL:0000215!2.75e-11!57;CL:0000183!4.93e-09!59;CL:0000071!7.64e-09!18;CL:0002546!7.64e-09!18;CL:0000192!1.06e-08!42;CL:0000514!1.06e-08!42;CL:1000497!2.38e-08!18;CL:0002518!2.38e-08!18;CL:0000187!1.03e-07!54;CL:0000680!1.60e-07!57;CL:0000056!1.60e-07!57;CL:0000355!1.60e-07!57;CL:1000449!3.46e-07!16;CL:0000144!4.40e-07!625;CL:0000076!4.50e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.34e-12;24!CL:0000115;6.89e-10;36!CL:0000071;6.77e-09;18!CL:0002078;2.54e-08;45!CL:1000497;6.93e-08;17!CL:0002518;6.93e-08;17!CL:0000213;3.24e-07;58!CL:0000215;3.24e-07;58!CL:0000192;8.30e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.86e-29,253;CL:0002321,1.13e-24,250;CL:0000222,4.72e-20,121;CL:0002139,5.32e-12,24;CL:0002078,5.63e-12,45;CL:0000115,7.86e-12,36;CL:0000213,1.44e-11,58;CL:0000215,1.44e-11,58;CL:0000192,3.43e-09,43;CL:0000514,3.43e-09,43;CL:0000071,6.81e-09,18;CL:0002546,6.81e-09,18;CL:0000187,3.77e-08,55;CL:0000680,6.01e-08,58;CL:0000056,6.01e-08,58;CL:0000355,6.01e-08,58;CL:1000497,7.02e-08,17;CL:0002518,7.02e-08,17;CL:0000076,6.11e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;6.77e-09;18!CL:0000514;8.30e-07;43 | |||
|ontology_enrichment_disease=DOID:305!6.37e-08!106;DOID:0050687!2.99e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.19e-08,106;DOID:0050687,4.15e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0002100!3.33e-19!216;UBERON:0003914!1.80e-18!118;UBERON:0002049!1.51e-16!79;UBERON:0007798!1.51e-16!79;UBERON:0000466!4.88e-15!126;UBERON:0000055!5.87e-15!69;UBERON:0003104!7.02e-15!238;UBERON:0009142!7.02e-15!238;UBERON:0000490!3.55e-14!138;UBERON:0009569!4.83e-14!113;UBERON:0000464!1.24e-12!104;UBERON:0003886!4.03e-12!63;UBERON:0004872!4.33e-12!84;UBERON:0001981!4.61e-12!60;UBERON:0007500!4.61e-12!60;UBERON:0004537!4.61e-12!60;UBERON:0006965!4.61e-12!60;UBERON:0005256!3.04e-11!143;UBERON:0005177!3.85e-11!107;UBERON:0002553!8.69e-11!70;UBERON:0000468!2.14e-10!659;UBERON:0006554!7.34e-10!44;UBERON:0000926!9.93e-10!448;UBERON:0004120!9.93e-10!448;UBERON:0006603!9.93e-10!448;UBERON:0001637!1.06e-09!42;UBERON:0003509!1.06e-09!42;UBERON:0004572!1.06e-09!42;UBERON:0001008!1.36e-09!45;UBERON:0002417!1.79e-09!61;UBERON:0000916!1.79e-09!61;UBERON:0000487!7.23e-09!22;UBERON:0001986!7.64e-09!18;UBERON:0004638!7.64e-09!18;UBERON:0004852!7.64e-09!18;UBERON:0005172!1.95e-08!55;UBERON:0005173!1.95e-08!55;UBERON:0004535!2.77e-08!110;UBERON:0001048!3.42e-08!168;UBERON:0004573!4.44e-08!33;UBERON:0004571!4.44e-08!33;UBERON:0006914!5.26e-08!25;UBERON:0001009!6.02e-08!113;UBERON:0000119!7.38e-08!312;UBERON:0000481!7.82e-08!347;UBERON:0004119!1.13e-07!169;UBERON:0000925!1.13e-07!169;UBERON:0006595!1.13e-07!169;UBERON:0003064!1.37e-07!37;UBERON:0000483!1.53e-07!309;UBERON:0002113!1.78e-07!27;UBERON:0003918!1.78e-07!27;UBERON:0005095!1.78e-07!27;UBERON:0007687!1.78e-07!27;UBERON:0004921!1.99e-07!129;UBERON:0004185!1.99e-07!129;UBERON:0002323!2.90e-07!46;UBERON:0000353!3.44e-07!17;UBERON:0004211!3.46e-07!16;UBERON:0001285!3.46e-07!16;UBERON:0007684!3.46e-07!16;UBERON:0003220!3.46e-07!16;UBERON:0004208!3.46e-07!16;UBERON:0000947!3.90e-07!21;UBERON:0010191!3.90e-07!21;UBERON:0000467!5.89e-07!625;UBERON:0004111!6.33e-07!241;UBERON:0004458!6.34e-07!49;UBERON:0005156!6.34e-07!59;UBERON:0000990!6.34e-07!59;UBERON:0000480!8.26e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;6.41e-09;22!UBERON:0004638;6.77e-09;18!UBERON:0001986;6.77e-09;18!UBERON:0004852;6.77e-09;18!UBERON:0000055;1.22e-08;65!UBERON:0003914;1.27e-08;74!UBERON:0006914;6.94e-08;25!UBERON:0001637;8.09e-08;42!UBERON:0003509;8.09e-08;42!UBERON:0004572;8.09e-08;42!UBERON:0006554;8.17e-08;30!UBERON:0001008;8.17e-08;30!UBERON:0007500;8.55e-08;56!UBERON:0001981;8.55e-08;56!UBERON:0004537;8.55e-08;56!UBERON:0002049;9.51e-08;75!UBERON:0007798;9.51e-08;75!UBERON:0000490;1.10e-07;33!UBERON:0004573;1.17e-07;33!UBERON:0004571;1.17e-07;33!UBERON:0002113;1.30e-07;24!UBERON:0011143;1.30e-07;24!UBERON:0000947;3.69e-07;21!UBERON:0010191;3.69e-07;21!UBERON:0000353;8.93e-07;15!UBERON:0000025;9.26e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.86e-22,199;UBERON:0003914,3.90e-18,117;UBERON:0002049,1.32e-16,78;UBERON:0007798,1.32e-16,78;UBERON:0000055,5.22e-15,68;UBERON:0003104,9.42e-15,160;UBERON:0009142,9.42e-15,160;UBERON:0009569,3.88e-14,112;UBERON:0000490,1.93e-13,148;UBERON:0005177,3.57e-12,101;UBERON:0004872,4.25e-12,83;UBERON:0007500,4.32e-12,59;UBERON:0001981,4.32e-12,59;UBERON:0004537,4.32e-12,59;UBERON:0006965,4.32e-12,59;UBERON:0005256,1.21e-10,122;UBERON:0006554,4.21e-10,47;UBERON:0001008,7.67e-10,48;UBERON:0001637,9.30e-10,42;UBERON:0003509,9.30e-10,42;UBERON:0004572,9.30e-10,42;UBERON:0002417,4.27e-09,60;UBERON:0000916,4.27e-09,60;UBERON:0000487,6.45e-09,22;UBERON:0004638,6.81e-09,18;UBERON:0001986,6.81e-09,18;UBERON:0004852,6.81e-09,18;UBERON:0003886,1.22e-08,54;UBERON:0004535,2.33e-08,109;UBERON:0004573,4.01e-08,33;UBERON:0004571,4.01e-08,33;UBERON:0005172,4.65e-08,54;UBERON:0005173,4.65e-08,54;UBERON:0001009,5.13e-08,112;UBERON:0006914,6.96e-08,25;UBERON:0002553,1.45e-07,61;UBERON:0007503,2.59e-07,78;UBERON:0002323,3.16e-07,46;UBERON:0000947,3.57e-07,21;UBERON:0010191,3.57e-07,21;UBERON:0001134,4.70e-07,62;UBERON:0002036,4.70e-07,62;UBERON:0003082,4.70e-07,62;UBERON:0002113,4.74e-07,26;UBERON:0003918,4.74e-07,26;UBERON:0011143,4.74e-07,26;UBERON:0005095,4.74e-07,26;UBERON:0007687,4.74e-07,26;UBERON:0005156,6.14e-07,59;UBERON:0000990,6.14e-07,59;UBERON:0000119,7.56e-07,309;UBERON:0002385,8.61e-07,64;UBERON:0001015,8.61e-07,64;UBERON:0000383,8.61e-07,64;UBERON:0004458,8.85e-07,49;UBERON:0000353,9.06e-07,15 | |||
|phase1_expression=126.084795213766,48.6008189232532,114.595930530025,39.0285863577209,71.513775108366,127.361424518654,106.38594883069,106.760658609134,15.1487664355906,184.791920249135,497.532232764341,8.51921351307672,16.881086606621,16.0896258848061,24.8548031795937,142.532931047776,168.754467846714,148.983258439024,190.293791528298,10.3421688784502,18.1560615207385,40.1222043491952,5.15224776835902,5.47497700291537,2.63639543149086,10.1629829644775,9.27736660784387,3.06972047123349,0.393364276848904,0,1.39334510984468,16.5495820406207,10.5422071572388,333.148363160276,0.542270404062111,0.142169232487422,0,0,0,0,1.79132379391939,12.6318529747402,1.03030227053675,2.18097358169347,2.26725566213286,0.970336244751265,0.697287110717054,2.46700732813095,2.47765096716083,1.43846196161075,3.33008918487831,3.78371567821736,1.72372840368309,0,0,1.12945403725563,2.72906150057846,3.82029923556644,0.306083892370903,4.49300637906531,4.47535988059329,0.329851300186716,2.59302754908121,0.852449501065388,0,0.56738522469114,0,3.01498398308092,1.0429658368404,4.77815458351257,1.81619850790011,3.31449872388808,0.632924774881769,0.422510572623884,0.637812899895131,0.419317291016752,0,0,0,0,0.39783335439818,0.182664153764634,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,80.4562658836074,61.0337782330309,35.4179296306579,99.3957669057557,85.7287827187371,87.92183700922,34.9925816702484,39.9040593648161,28.0768406977282,59.8669373148923,80.2809941235172,24.6895557313188,66.3017424692427,29.2919709799699,4.21911611751088,6.96518949197069,23.1346851302825,0,0,0,181.072553111068,477.430200283899,349.570485118847,434.156499397639,564.226741702323,536.755299825072,329.794057195087,345.503207009393,449.688556036002,302.922154552027,402.023658474929,825.655506810305,302.63695135973,270.967690214905,850.649045275848,82.9594475759101,132.023271104188,112.161034561389,596.401719742286,565.762333102605,425.028045918545,0,0,28.7822074414073,131.697567199259,126.63051166458,223.506697212713,880.301589078109,102.144494073127,53.8250496136615,90.7366463702492,200.787384411568,10.2699641681923,199.371794663138,20.7596616954093,50.5533808334071,92.7643238412798,581.117150947816,24.6606460695953,88.4231323393896,18.6810850689751,13.974705338608,15.3779297149725,2.24721290723598,13.8824836453327,3.80786383666481,56.1058991784406,36.8280885757437,39.068174826012,136.524204290704,1096.61128441158,5.05008341862199,1.87677779807946,4.71008996323111,11.4134181429018,13.1789752193578,55.137367618721,66.2443949654523,26.011497174885,53.3893472046419,33.6971722843703,54.0163972951924,21.2288210231184,118.514648420989,96.4085315797635,27.1729894908439,34.8824478477091,23.9812085531909,36.4517598623505,31.6826271364871,49.701342952326,12.6947643766827,20.0081498926375,8.31021668602176,14.7282905119051,4.87567812161307,109.532388104377,5.56625026950238,74.1317355507527,214.785705991848,74.1823301574347,5.47466038613745,10.9514672630871,9.00537313470039,15.1948413487729,23.218396401599,23.1001434134267,33.8357448113954,35.7399542965576,13.978639733242,63.1984463756617,58.8274499049497,20.1680026244432,105.303251673088,106.548255563063,71.1782240350822,217.755859114271,309.934320105615,33.3374949178434,24.9914809355421,17.7457048750563,14.7424082501644,36.6289742142471,0,67.6436411987125,103.455389610011,2.52425656439839,188.834945472801,0.703702806881416,6.75895649657266,2565.74040431881,100.873674172119,118.351700460724,33.5038870377972,363.849543436811,843.244421372432,1867.22057222147,565.815848745695,122.481681683688,142.508702907749,7.38651018262192,18.4863369459998,16.7953213386263,31.8695035555042,9.57498130733499,15.8788108911473,178.221460178668,164.498809198902,52.9068097247991,11.3312544716067,91.2181776377022,89.151089682532,51.7390632766892,128.893524528334,38.2892302581779,2129.5854724874,698.61598537188,1113.68162360781,955.575889691985,944.57891691912,1629.2106659943,85.1074930181288,231.494796550472,49.7966960724251,265.136289019202,354.079881393364,22.823174319012,353.697695057878,246.497625479938,41.667594630467,18.4403871630262,54.3501245192843,99.5126835860707,119.376753186117,79.8543126677346,20.847115794799,90.6249469293492,69.6917648181418,108.216736364391,378.245521032528,70.3809857921682,520.549781144295,68.3069644347692,82.2252363983823,262.389216763283,125.199510059184,15.690059554479,31.4175435468647,56.7114650239058,23.6360471476662,0,0,0,0,57.1712904500543,14.3153839243384,4.63973287666617,4.35542289869307,3.18969375826582,0,0,0,17.1768088406796,67.5230203430564,210.501658390995,36.3949007678912,33.0093629274749,26.9671129708028,11.831282914264,134.823852678018,541.229859653244,425.274323012195,21.255219153134,40.5612170791747,23.024157834042,415.294254978473,120.1001983338,0,0.215714200818617,0.106727557803444,28.1908641445021,261.30364003148,39.6131284261881,407.64112824625,193.515548316247,142.014007783135,427.984758514041,112.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| |||
|short_description=p1@GDF15 | |||
}} |
Latest revision as of 15:51, 16 September 2015
Short description: | p1@GDF15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GDF15_5end |
Coexpression cluster: | C1813_somatostatinoma_melanoma_mesenchymal_placenta_smallcell_Keratocytes_renal |
Association with transcript: | 0bp_to_ENST00000252809, NM_004864, uc002niv.2_5end |
EntrezGene: | GDF15 |
HGNC: | 30142 |
UniProt: | Q99988 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.86e-29 | 253 |
embryonic cell | 1.13e-24 | 250 |
mesodermal cell | 4.72e-20 | 121 |
endothelial cell of vascular tree | 5.32e-12 | 24 |
meso-epithelial cell | 5.63e-12 | 45 |
endothelial cell | 7.86e-12 | 36 |
lining cell | 1.44e-11 | 58 |
barrier cell | 1.44e-11 | 58 |
smooth muscle cell | 3.43e-09 | 43 |
smooth muscle myoblast | 3.43e-09 | 43 |
blood vessel endothelial cell | 6.81e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.81e-09 | 18 |
muscle cell | 3.77e-08 | 55 |
muscle precursor cell | 6.01e-08 | 58 |
myoblast | 6.01e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.01e-08 | 58 |
kidney cell | 7.02e-08 | 17 |
kidney epithelial cell | 7.02e-08 | 17 |
squamous epithelial cell | 6.11e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.19e-08 | 106 |
cell type cancer | 4.15e-07 | 143 |