FFCP PHASE1:Hg19::chr1:161059803..161059816,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81607 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19688 | |||
|TSSclassifier=strong | |||
|UniProt=Q96NY8 | |||
|association_with_transcript=-414bp_to_ENST00000368012_5end | |||
|cluster_id=chr1:161059803..161059816,- | |||
|coexpression_cluster_id=C981 | |||
|description=CAGE_peak_7_at_PVRL4_5end | |||
|id=chr1:161059803..161059816,- | |||
|ontology_enrichment_celltype=CL:0002541!7.01e-16!3;CL:0001014!5.81e-11!2;CL:0001016!5.81e-11!2;CL:0000840!7.43e-08!5;CL:0001029!7.43e-08!5;CL:0000039!4.02e-07!7;CL:0000586!4.02e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002541;7.08e-34;3!CL:0000349;2.38e-21;19!CL:0002537;6.65e-21;5!CL:0000039;3.66e-15;7!CL:0000586;3.66e-15;7!CL:0000083;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.51e-34,3;CL:0000349,2.32e-21,19;CL:0002537,7.35e-21,5;CL:0000039,3.53e-15,7;CL:0000586,3.53e-15,7;CL:0000083,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;8.64e-26;1!UBERON:0003056;1.60e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;8.64e-26;1!DOID:10165;8.64e-26;1!DOID:1798;8.64e-26;1!DOID:1793;1.86e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.26e-25,1;DOID:10165,1.26e-25,1;DOID:1798,1.26e-25,1;DOID:1793,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000476!7.01e-16!3;UBERON:0000920!7.01e-16!3;UBERON:0005631!8.70e-13!14;UBERON:0000158!8.70e-13!14;UBERON:0003124!6.79e-12!7;UBERON:0000478!3.45e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.52e-40;10!UBERON:0000158;5.52e-40;10!UBERON:0003124;7.08e-34;3!UBERON:0000920;7.08e-34;3!UBERON:0000941;8.64e-26;1!UBERON:0001785;8.64e-26;1!UBERON:0002464;8.64e-26;1!UBERON:0004904;8.64e-26;1!UBERON:0001021;8.64e-26;1!UBERON:0000478;5.12e-17;24!UBERON:0000305;3.06e-15;7!UBERON:0003714;1.29e-13;2!UBERON:0005162;1.29e-13;2!UBERON:0000122;1.29e-13;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.51e-34,3;UBERON:0005631,9.03e-29,14;UBERON:0000158,9.03e-29,14;UBERON:0000941,7.62e-26,1;UBERON:0001785,7.62e-26,1;UBERON:0002464,7.62e-26,1;UBERON:0004904,7.62e-26,1;UBERON:0001021,7.62e-26,1;UBERON:0003902,7.62e-26,1;UBERON:0005425,7.62e-26,1;UBERON:0000478,5.01e-17,24;UBERON:0000305,3.29e-15,7;UBERON:0003124,3.29e-15,7;UBERON:0003714,1.21e-13,2;UBERON:0005162,1.21e-13,2;UBERON:0000122,1.21e-13,2;UBERON:0004871,1.94e-13,8;UBERON:0004923,1.17e-09,66;UBERON:0001781,1.80e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,2.62618933211459,0,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,1.1528195219403,3.8595787096202,0.217294743844016,1.5950057986596,0.0915975934018623,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,1.04762677792569,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0.975726071789027,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0.0645889098360061,0,0,0,0,0,0,0.134704106029175,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@PVRL4 | |||
}} |
Latest revision as of 04:38, 18 September 2015
Short description: | p7@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PVRL4_5end |
Coexpression cluster: | C981_choriocarcinoma_chorionic_pancreatic_placenta_amniotic_vagina_MCF7 |
Association with transcript: | -414bp_to_ENST00000368012_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | Q96NY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.51e-34 | 3 |
extraembryonic cell | 2.32e-21 | 19 |
amnion mesenchymal stem cell | 7.35e-21 | 5 |
germ line cell | 3.53e-15 | 7 |
germ cell | 3.53e-15 | 7 |
epithelial cell of pancreas | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 5.51e-34 | 3 |
extraembryonic membrane | 9.03e-29 | 14 |
membranous layer | 9.03e-29 | 14 |
cranial nerve II | 7.62e-26 | 1 |
cranial nerve | 7.62e-26 | 1 |
nerve trunk | 7.62e-26 | 1 |
nerve connecting eye with brain | 7.62e-26 | 1 |
nerve | 7.62e-26 | 1 |
retinal neural layer | 7.62e-26 | 1 |
presumptive neural retina | 7.62e-26 | 1 |
extraembryonic structure | 5.01e-17 | 24 |
amnion | 3.29e-15 | 7 |
chorion | 3.29e-15 | 7 |
neural tissue | 1.21e-13 | 2 |
multi cell component structure | 1.21e-13 | 2 |
neuron projection bundle | 1.21e-13 | 2 |
somatic layer of lateral plate mesoderm | 1.94e-13 | 8 |
organ component layer | 1.17e-09 | 66 |
layer of retina | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.26e-25 | 1 |
endocrine pancreas cancer | 1.26e-25 | 1 |
pancreatic endocrine carcinoma | 1.26e-25 | 1 |
pancreatic cancer | 2.04e-07 | 4 |