FFCP PHASE1:Hg19::chr6:157099198..157099221,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57492 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18040 | |||
|TSSclassifier=strong | |||
|UniProt=G3XAA0,C9JZD6,F5H333 | |||
|association_with_transcript=112bp_to_ENST00000275248,ENST00000354354,ENST00000506048,ENST00000535255,uc003qqn.2,uc003qqo.2,uc003qqp.2_5end | |||
|cluster_id=chr6:157099198..157099221,+ | |||
|description=CAGE_peak_3_at_ARID1B_5end | |||
|id=chr6:157099198..157099221,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.70e-29!172;CL:0000566!3.70e-29!172;CL:0000988!4.33e-29!182;CL:0002032!6.29e-26!165;CL:0000837!6.29e-26!165;CL:0000738!5.31e-25!140;CL:0002031!8.45e-18!124;CL:0002087!9.50e-18!119;CL:0000763!1.73e-13!112;CL:0000049!1.73e-13!112;CL:0000542!1.39e-12!53;CL:0000051!1.39e-12!53;CL:0000838!2.07e-12!52;CL:0000766!4.72e-09!76;CL:0000791!3.25e-08!18;CL:0000789!3.25e-08!18;CL:0002420!3.25e-08!18;CL:0002419!3.25e-08!18;CL:0000790!3.25e-08!18;CL:0000557!3.82e-08!71;CL:0000084!9.46e-08!25;CL:0000827!9.46e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.83e-08;18!CL:0000789;3.83e-08;18!CL:0002419;3.83e-08;18!CL:0000084;1.02e-07;25!CL:0000542;3.05e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.97e-30,168;CL:0000988,1.22e-29,177;CL:0002032,8.04e-27,161;CL:0000837,8.04e-27,161;CL:0000738,5.19e-26,136;CL:0002031,1.45e-18,120;CL:0002087,1.87e-18,115;CL:0000763,3.25e-14,108;CL:0000049,3.25e-14,108;CL:0000542,1.38e-12,53;CL:0000051,1.38e-12,53;CL:0000838,2.06e-12,52;CL:0000766,9.64e-10,72;CL:0000557,1.06e-08,67;CL:0000791,2.76e-08,18;CL:0000789,2.76e-08,18;CL:0002420,2.76e-08,18;CL:0002419,2.76e-08,18;CL:0000790,2.76e-08,18;CL:0000084,8.12e-08,25;CL:0000827,8.12e-08,25;CL:0000839,6.25e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000790;3.83e-08;18!CL:0000051;3.05e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.37e-14!115;UBERON:0002193!1.11e-12!112;UBERON:0002390!7.39e-12!102;UBERON:0003061!7.39e-12!102;UBERON:0001869!8.69e-11!32;UBERON:0003080!9.28e-11!42;UBERON:0002780!9.38e-11!41;UBERON:0001890!9.38e-11!41;UBERON:0006240!9.38e-11!41;UBERON:0002619!3.60e-10!22;UBERON:0002020!4.51e-10!34;UBERON:0003528!4.51e-10!34;UBERON:0001893!4.87e-10!34;UBERON:0002791!7.20e-10!33;UBERON:0001049!8.86e-10!57;UBERON:0005068!8.86e-10!57;UBERON:0006241!8.86e-10!57;UBERON:0007135!8.86e-10!57;UBERON:0001950!3.27e-09!20;UBERON:0000956!2.05e-08!25;UBERON:0000203!2.05e-08!25;UBERON:0000955!5.26e-08!69;UBERON:0006238!5.26e-08!69;UBERON:0002616!9.60e-08!59;UBERON:0001017!5.65e-07!82;UBERON:0002405!8.00e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.99e-10;22!UBERON:0001869;7.67e-10;32!UBERON:0001950;1.88e-09;20!UBERON:0002791;2.13e-09;32!UBERON:0003528;6.68e-09;34!UBERON:0002020;6.68e-09;34!UBERON:0001893;1.01e-08;34!UBERON:0000956;1.22e-08;25!UBERON:0000203;1.22e-08;25!UBERON:0002780;2.67e-08;41!UBERON:0001890;2.67e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.05e-14,114;UBERON:0002193,3.50e-13,108;UBERON:0002390,1.86e-12,98;UBERON:0003061,1.86e-12,98;UBERON:0001869,6.92e-11,32;UBERON:0002780,9.04e-11,41;UBERON:0001890,9.04e-11,41;UBERON:0003080,9.04e-11,41;UBERON:0006240,9.04e-11,41;UBERON:0002791,2.31e-10,32;UBERON:0002619,2.91e-10,22;UBERON:0003528,3.65e-10,34;UBERON:0002020,3.65e-10,34;UBERON:0001893,3.95e-10,34;UBERON:0001049,1.07e-09,56;UBERON:0005068,1.07e-09,56;UBERON:0006241,1.07e-09,56;UBERON:0007135,1.07e-09,56;UBERON:0002405,1.56e-09,93;UBERON:0000073,1.56e-09,53;UBERON:0002616,1.56e-09,53;UBERON:0001950,2.70e-09,20;UBERON:0000956,1.73e-08,25;UBERON:0000203,1.73e-08,25;UBERON:0000955,6.95e-08,68;UBERON:0006238,6.95e-08,68;UBERON:0002371,5.45e-07,76;UBERON:0001017,8.43e-07,81 | |||
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| |||
|short_description=p3@ARID1B | |||
}} |
Latest revision as of 09:51, 16 September 2015
Short description: | p3@ARID1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARID1B_5end |
Coexpression cluster: | NA |
Association with transcript: | 112bp_to_ENST00000275248, ENST00000354354, ENST00000506048, ENST00000535255, uc003qqn.2, uc003qqo.2, uc003qqp.2_5end |
EntrezGene: | ARID1B |
HGNC: | 18040 |
UniProt: | G3XAA0C9JZD6F5H333 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.97e-30 | 168 |
hematopoietic cell | 1.22e-29 | 177 |
hematopoietic oligopotent progenitor cell | 8.04e-27 | 161 |
hematopoietic multipotent progenitor cell | 8.04e-27 | 161 |
leukocyte | 5.19e-26 | 136 |
hematopoietic lineage restricted progenitor cell | 1.45e-18 | 120 |
nongranular leukocyte | 1.87e-18 | 115 |
myeloid cell | 3.25e-14 | 108 |
common myeloid progenitor | 3.25e-14 | 108 |
lymphocyte | 1.38e-12 | 53 |
common lymphoid progenitor | 1.38e-12 | 53 |
lymphoid lineage restricted progenitor cell | 2.06e-12 | 52 |
myeloid leukocyte | 9.64e-10 | 72 |
granulocyte monocyte progenitor cell | 1.06e-08 | 67 |
mature alpha-beta T cell | 2.76e-08 | 18 |
alpha-beta T cell | 2.76e-08 | 18 |
immature T cell | 2.76e-08 | 18 |
mature T cell | 2.76e-08 | 18 |
immature alpha-beta T cell | 2.76e-08 | 18 |
T cell | 8.12e-08 | 25 |
pro-T cell | 8.12e-08 | 25 |
myeloid lineage restricted progenitor cell | 6.25e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.05e-14 | 114 |
hemolymphoid system | 3.50e-13 | 108 |
hematopoietic system | 1.86e-12 | 98 |
blood island | 1.86e-12 | 98 |
cerebral hemisphere | 6.92e-11 | 32 |
regional part of forebrain | 9.04e-11 | 41 |
forebrain | 9.04e-11 | 41 |
anterior neural tube | 9.04e-11 | 41 |
future forebrain | 9.04e-11 | 41 |
regional part of telencephalon | 2.31e-10 | 32 |
regional part of cerebral cortex | 2.91e-10 | 22 |
brain grey matter | 3.65e-10 | 34 |
gray matter | 3.65e-10 | 34 |
telencephalon | 3.95e-10 | 34 |
neural tube | 1.07e-09 | 56 |
neural rod | 1.07e-09 | 56 |
future spinal cord | 1.07e-09 | 56 |
neural keel | 1.07e-09 | 56 |
immune system | 1.56e-09 | 93 |
regional part of nervous system | 1.56e-09 | 53 |
regional part of brain | 1.56e-09 | 53 |
neocortex | 2.70e-09 | 20 |
cerebral cortex | 1.73e-08 | 25 |
pallium | 1.73e-08 | 25 |
brain | 6.95e-08 | 68 |
future brain | 6.95e-08 | 68 |
bone marrow | 5.45e-07 | 76 |
central nervous system | 8.43e-07 | 81 |