FF:11303-117B7: Difference between revisions

Latest revision as of 16:31, 3 June 2020

Name:	Fibroblast - Gingival, donor5 (GFH3)
Species:	Human (Homo sapiens)
Library ID:	CNhs11952
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	22 years old adult
sex	male
age	22
cell type	fibroblast
cell line	NA
company	N/A
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004968

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11952		CAGE		DRX008264		DRR009136

Accession ID Hg19

Library id		BAM		CTSS
CNhs11952		DRZ000561		DRZ001946

Accession ID Hg38

Library id		BAM		CTSS
CNhs11952		DRZ011911		DRZ013296

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0138
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.128
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.985
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.395
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0805
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.096
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.825
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.366
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.525
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.151
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00608
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.208
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.35
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.173
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.356
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.241
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.436
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.472
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.35
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.096
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.084
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0952
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.571
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11952

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0297
MA0003.1	MA0003.1	0.353
MA0004.1	MA0004.1	0.305
MA0006.1	MA0006.1	0.0659
MA0007.1	MA0007.1	0.826
MA0009.1	MA0009.1	0.68
MA0014.1	MA0014.1	0.346
MA0017.1	MA0017.1	0.266
MA0018.2	MA0018.2	0.00139
MA0019.1	MA0019.1	0.82
MA0024.1	MA0024.1	0.00743
MA0025.1	MA0025.1	0.00115
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	6.7767e-4
MA0029.1	MA0029.1	0.585
MA0030.1	MA0030.1	0.425
MA0031.1	MA0031.1	0.0789
MA0035.2	MA0035.2	0.00272
MA0038.1	MA0038.1	0.0404
MA0039.2	MA0039.2	2.15345e-4
MA0040.1	MA0040.1	0.509
MA0041.1	MA0041.1	0.599
MA0042.1	MA0042.1	0.622
MA0043.1	MA0043.1	2.1055e-4
MA0046.1	MA0046.1	0.132
MA0047.2	MA0047.2	0.316
MA0048.1	MA0048.1	0.18
MA0050.1	MA0050.1	1.75767e-4
MA0051.1	MA0051.1	0.00183
MA0052.1	MA0052.1	0.198
MA0055.1	MA0055.1	0.346
MA0057.1	MA0057.1	0.392
MA0058.1	MA0058.1	0.125
MA0059.1	MA0059.1	0.16
MA0060.1	MA0060.1	1.93306e-10
MA0061.1	MA0061.1	0.295
MA0062.2	MA0062.2	7.21861e-11
MA0065.2	MA0065.2	0.528
MA0066.1	MA0066.1	0.81
MA0067.1	MA0067.1	0.00854
MA0068.1	MA0068.1	0.425
MA0069.1	MA0069.1	0.196
MA0070.1	MA0070.1	0.835
MA0071.1	MA0071.1	0.989
MA0072.1	MA0072.1	0.438
MA0073.1	MA0073.1	0.72
MA0074.1	MA0074.1	0.188
MA0076.1	MA0076.1	6.71128e-5
MA0077.1	MA0077.1	0.349
MA0078.1	MA0078.1	0.618
MA0079.2	MA0079.2	0.643
MA0080.2	MA0080.2	1.65009e-9
MA0081.1	MA0081.1	0.0047
MA0083.1	MA0083.1	0.0508
MA0084.1	MA0084.1	0.0964
MA0087.1	MA0087.1	0.785
MA0088.1	MA0088.1	0.193
MA0090.1	MA0090.1	0.0292
MA0091.1	MA0091.1	0.087
MA0092.1	MA0092.1	0.687
MA0093.1	MA0093.1	0.226
MA0099.2	MA0099.2	2.88628e-5
MA0100.1	MA0100.1	0.502
MA0101.1	MA0101.1	0.059
MA0102.2	MA0102.2	0.811
MA0103.1	MA0103.1	0.0204
MA0104.2	MA0104.2	0.00168
MA0105.1	MA0105.1	0.234
MA0106.1	MA0106.1	0.26
MA0107.1	MA0107.1	0.0844
MA0108.2	MA0108.2	0.714
MA0111.1	MA0111.1	0.942
MA0112.2	MA0112.2	0.143
MA0113.1	MA0113.1	0.975
MA0114.1	MA0114.1	0.241
MA0115.1	MA0115.1	0.232
MA0116.1	MA0116.1	0.508
MA0117.1	MA0117.1	0.0837
MA0119.1	MA0119.1	0.368
MA0122.1	MA0122.1	0.202
MA0124.1	MA0124.1	0.103
MA0125.1	MA0125.1	0.517
MA0131.1	MA0131.1	0.179
MA0135.1	MA0135.1	0.44
MA0136.1	MA0136.1	2.0319e-14
MA0137.2	MA0137.2	0.267
MA0138.2	MA0138.2	0.513
MA0139.1	MA0139.1	0.498
MA0140.1	MA0140.1	0.00458
MA0141.1	MA0141.1	0.933
MA0142.1	MA0142.1	0.135
MA0143.1	MA0143.1	0.757
MA0144.1	MA0144.1	0.82
MA0145.1	MA0145.1	0.87
MA0146.1	MA0146.1	0.708
MA0147.1	MA0147.1	5.3792e-4
MA0148.1	MA0148.1	0.506
MA0149.1	MA0149.1	0.407
MA0150.1	MA0150.1	0.0037
MA0152.1	MA0152.1	0.0159
MA0153.1	MA0153.1	0.478
MA0154.1	MA0154.1	0.686
MA0155.1	MA0155.1	0.143
MA0156.1	MA0156.1	3.60967e-11
MA0157.1	MA0157.1	0.203
MA0159.1	MA0159.1	0.23
MA0160.1	MA0160.1	0.304
MA0162.1	MA0162.1	0.0726
MA0163.1	MA0163.1	0.499
MA0164.1	MA0164.1	0.814
MA0258.1	MA0258.1	0.158
MA0259.1	MA0259.1	0.0146

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11952

Novel motif	Logo	P-value
1	1	0.266
10	10	0.814
100	100	0.867
101	101	0.2
102	102	0.0831
103	103	0.843
104	104	0.542
105	105	0.0837
106	106	0.129
107	107	0.0803
108	108	0.317
109	109	0.815
11	11	0.685
110	110	0.802
111	111	0.613
112	112	0.783
113	113	0.969
114	114	0.597
115	115	0.00118
116	116	0.0426
117	117	0.625
118	118	0.607
119	119	0.839
12	12	0.0489
120	120	0.306
121	121	0.979
122	122	0.0254
123	123	0.0552
124	124	0.624
125	125	0.92
126	126	0.918
127	127	0.843
128	128	0.0943
129	129	0.307
13	13	0.0557
130	130	0.853
131	131	0.483
132	132	0.343
133	133	0.213
134	134	0.222
135	135	0.904
136	136	0.0808
137	137	0.728
138	138	0.994
139	139	0.55
14	14	0.24
140	140	0.638
141	141	0.0591
142	142	0.923
143	143	0.816
144	144	0.328
145	145	0.72
146	146	0.566
147	147	0.283
148	148	0.472
149	149	0.209
15	15	0.229
150	150	0.121
151	151	0.788
152	152	0.00338
153	153	0.905
154	154	0.512
155	155	0.111
156	156	0.961
157	157	0.364
158	158	0.0501
159	159	0.82
16	16	0.135
160	160	0.89
161	161	0.874
162	162	0.251
163	163	0.781
164	164	0.258
165	165	0.905
166	166	0.0245
167	167	0.379
168	168	0.562
169	169	0.23
17	17	0.76
18	18	0.307
19	19	0.0096
2	2	0.286
20	20	0.481
21	21	0.151
22	22	0.471
23	23	0.354
24	24	0.146
25	25	0.182
26	26	0.332
27	27	0.855
28	28	0.154
29	29	0.775
3	3	0.888
30	30	0.459
31	31	0.751
32	32	1.03151e-17
33	33	0.805
34	34	0.92
35	35	0.564
36	36	0.0138
37	37	0.427
38	38	0.256
39	39	0.626
4	4	0.236
40	40	0.0442
41	41	0.493
42	42	0.218
43	43	0.968
44	44	0.379
45	45	0.992
46	46	0.59
47	47	0.405
48	48	0.422
49	49	0.267
5	5	0.59
50	50	0.555
51	51	0.929
52	52	0.578
53	53	0.0807
54	54	0.673
55	55	0.219
56	56	0.861
57	57	0.782
58	58	0.239
59	59	0.0379
6	6	0.73
60	60	0.996
61	61	0.782
62	62	0.78
63	63	0.479
64	64	0.467
65	65	0.735
66	66	0.104
67	67	0.825
68	68	0.402
69	69	0.604
7	7	0.086
70	70	0.492
71	71	0.624
72	72	0.373
73	73	0.0215
74	74	0.518
75	75	0.626
76	76	0.177
77	77	0.2
78	78	0.218
79	79	3.82121e-4
8	8	0.556
80	80	0.039
81	81	0.659
82	82	0.883
83	83	0.094
84	84	0.98
85	85	0.115
86	86	0.426
87	87	0.439
88	88	0.294
89	89	0.105
9	9	0.608
90	90	0.403
91	91	0.775
92	92	0.686
93	93	0.341
94	94	0.852
95	95	0.839
96	96	0.369
97	97	0.689
98	98	0.203
99	99	0.00422

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11952

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000063 human fibroblast of gingiva sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008156
+|DRA_sample_Accession=CAGE@SAMD00004968
-|accession_numbers=CAGE;DRX008264;DRR009136;DRZ000561;DRZ001946
+|accession_numbers=CAGE;DRX008264;DRR009136;DRZ000561;DRZ001946;DRZ011911;DRZ013296
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.17!163.69!PRRX1;;chr10:28034739..28034756,-!p1@MKX!2.10!125.61!MKX;;chr16:86544113..86544145,+!p1@FOXF1!2.04!134.02!FOXF1;;chr9:132427883..132427951,+!p2@PRRX2!1.93!84.81!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.85!89.26!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.84!91.74!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.76!76.65!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.64!122.64!MSX1;;chr7:19157248..19157268,-!p1@TWIST1!1.63!110.78!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.62!200.04!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.58!109.79!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!45.25!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.55!106.82!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.54!122.89!SIX1;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.18!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.45!31.16!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.40!39.81!TCF12;;chr8:72756667..72756736,-!p2@MSC!1.37!34.37!MSC;;chr2:200322654..200322707,-!p2@SATB2!1.37!32.64!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.48!RUNX2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!437.42!AEBP1;;chr1:170632477..170632506,+!p6@PRRX1!1.32!19.78!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.30!51.68!OSR1;;chr17:59477275..59477286,+!p3@TBX2!1.27!23.49!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.93!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.31!BARX1;;chr8:72756637..72756664,-!p3@MSC!1.24!18.55!MSC;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.22!TWIST2;;chr2:46524537..46524553,+!p1@EPAS1!1.17!1340.93!EPAS1;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.93!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!1.16!13.35!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.23!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!1.14!30.41!NFATC4;;chr6:1389989..1390019,+!p2@FOXF2!1.13!12.61!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.13!FOXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.22!NR4A3;;chr1:170632762..170632786,+!p13@PRRX1!1.09!11.37!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.29!TBX2;;chr8:72756267..72756296,-!p4@MSC!1.08!16.32!MSC;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.13!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.07!19.53!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.87!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.63!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.07!10.63!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.39!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!1.05!10.14!HEYL;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.64!PAX9;;chr10:28035133..28035148,-!p3@MKX!1.02!9.40!MKX;;chr1:75600067..75600094,+!p2@LHX8!1.02!9.40!LHX8;;chr10:31607702..31607755,+!p3@ZEB1!1.00!10.39!ZEB1;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.90!EBF3;;chr2:46602901..46602926,+!p7@EPAS1!0.99!11.87!EPAS1;;chr7:44143997..44144008,+!p3@AEBP1!0.98!11.13!AEBP1;;chr17:46132044..46132080,+!p4@NFE2L1!0.98!8.65!NFE2L1;;chr12:115122318..115122331,-!p2@TBX3!0.98!8.65!TBX3;;chr5:134369905..134369972,-!p1@PITX1!0.97!12.86!PITX1;;chr1:170632310..170632321,+!p15@PRRX1!0.97!8.41!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.96!26.46!AHRR;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.16!ZFY;;chr13:45151259..45151326,-!p2@TSC22D1!0.94!47.97!TSC22D1;;chr6:1389824..1389840,+!p3@FOXF2!0.94!7.67!FOXF2;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.53!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.89!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.93!7.42!KDM5D;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.62!OSR2;;chr8:72756063..72756125,-!p1@MSC!0.91!14.84!MSC;;chr2:95963052..95963106,+!p1@KCNIP3!0.91!7.17!KCNIP3;;chr1:170632647..170632659,+!p17@PRRX1!0.91!7.17!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.42!GLIS1;;chr7:96654133..96654150,-!p1@DLX5!0.90!6.92!DLX5;;chr10:28035112..28035130,-!p5@MKX!0.90!6.92!MKX;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.62!FOXD1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.63!ZBTB38;;chr2:172949484..172949522,+!p1@DLX1!0.89!6.68!DLX1;;chr10:28032421..28032494,-!p2@MKX!0.89!6.68!MKX;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr12:53625966..53626012,-!p2@RARG!0.87!17.80!RARG;;chr11:46299443..46299459,+!p4@CREB3L1!0.87!6.43!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.12!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.20!ZNF521;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.93!EPAS1;;chr12:53625846..53625861,-!p6@RARG!0.84!5.93!RARG;;chr8:60031934..60031986,-!p6@TOX!0.84!5.93!TOX;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.19!HMGA2;;chr10:28035155..28035166,-!p8@MKX!0.83!5.69!MKX;;chr2:191878874..191878938,-!p1@STAT1!0.82!327.88!STAT1;;chr11:12696071..12696086,+!p3@TEAD1!0.82!7.67!TEAD1;;chr13:45150455..45150472,-!p8@TSC22D1!0.81!5.44!TSC22D1;;chr1:170632683..170632696,+!p12@PRRX1!0.81!5.44!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.81!5.44!LHX8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.44!SIX2;;chr8:72756380..72756427,-!p8@MSC!0.81!5.44!MSC;;chr11:65687158..65687216,+!p4@DRAP1!0.80!33.13!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.79!8.90!MSX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.79!5.19!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.68!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!0.77!8.16!PAWR;;chr7:28220198..28220269,-!p2@JAZF1!0.76!46.73!JAZF1;;chr2:172950227..172950249,+!p2@DLX1!0.76!4.70!DLX1;;chr2:46602879..46602899,+!p8@EPAS1!0.75!5.69!EPAS1;;chr22:19748231..19748317,+!p1@TBX1!0.74!4.45!TBX1;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.47!NR4A2;;chr20:48807615..48807644,+!p6@CEBPB!0.73!7.67!CEBPB;;chr9:102584241..102584261,+!p4@NR4A3!0.73!7.17!NR4A3;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.72!4.20!RUNX1T1;;chr14:95236440..95236465,-!p1@GSC!0.72!4.20!GSC;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.20!KCNIP3;;chr14:75894714..75894733,+!p1@JDP2!0.71!133.03!JDP2;;chr16:54320101..54320125,-!p4@IRX3!0.71!6.18!IRX3;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.44!STAT1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.25!GLIS2;;chr11:615570..615721,-!p2@IRF7!0.70!8.65!IRF7;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.42!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.70!6.92!FOXQ1;;chr17:59477266..59477273,+!p6@TBX2!0.70!3.96!TBX2;;chr2:172967276..172967296,-!p3@DLX2!0.70!3.96!DLX2;;chr1:170633194..170633205,+!p18@PRRX1!0.70!3.96!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.70!3.96!PRRX1;;chr6:45390025..45390076,+!p2@RUNX2!0.69!10.39!RUNX2;;chr5:139487608..139487663,+!p3@PURA!0.69!9.15!PURA;;chr19:31840130..31840160,-!p2@TSHZ3!0.69!6.43!TSHZ3;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.46!SREBF1;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.13!DLX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.68!MEIS3;;chr8:48650715..48650735,-!p1@CEBPD!0.67!544.48!CEBPD;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.25!ARID5B;;chr11:12696002..12696022,+!p2@TEAD1!0.67!9.89!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.67!7.67!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!0.67!6.92!ZEB2;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.19!DRAP1;;chr10:28034395..28034404,-!p9@MKX!0.67!3.71!MKX;;chr2:200322229..200322251,-!p3@SATB2!0.67!3.71!SATB2;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.71!SIX2;;chr7:96654026..96654061,-!p2@DLX5!0.67!3.71!DLX5;;chr1:170632583..170632590,+!p26@PRRX1!0.67!3.71!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.71!TCF12;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.64!FOXC2;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.68!NFIX;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.46!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.65!3.46!MKX;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.46!PRRX1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.46!PITX1;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.46!EBF2;;chr8:72756194..72756208,-!p9@MSC!0.65!3.46!MSC;;chr3:71007344..71007348,-!p6@FOXP1!0.64!15.33!FOXP1;;chr11:65667884..65667895,-!p2@FOSL1!0.64!15.08!FOSL1;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.14!GLI3;;chr13:45151403..45151433,-!p5@TSC22D1!0.64!8.16!TSC22D1;;chr3:141105705..141105770,+!p4@ZBTB38!0.64!4.20!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.63!15.83!DRAP1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr16:54320158..54320200,-!p5@IRX3!0.63!4.95!IRX3;;chr2:46524865..46524870,+!p9@EPAS1!0.63!3.96!EPAS1;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.45!ARNT2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr14:61116168..61116180,-!p2@SIX1!0.62!3.71!SIX1;;chr7:1577899..1577943,+!p3@MAFK!0.62!3.21!MAFK;;chr2:96012353..96012378,+!p4@KCNIP3!0.62!3.21!KCNIP3;;chr1:170632325..170632339,+!p24@PRRX1!0.62!3.21!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.61!21.26!ZEB2;;chr16:54320617..54320643,-!p3@IRX3!0.61!4.20!IRX3;;chr6:35464817..35464894,-!p1@TEAD3!0.60!54.65!TEAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.60!4.20!EPAS1;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.20!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.60!3.21!SHOX2;;chr2:172967242..172967265,-!p2@DLX2!0.60!2.97!DLX2;;chr5:174151612..174151633,+!p2@MSX2!0.60!2.97!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.60!2.97!FOXF2;;chr9:102584278..102584285,+!p5@NR4A3!0.60!2.97!NR4A3;;chr11:34642612..34642646,+!p1@EHF!0.60!2.97!EHF;;chr12:80085120..80085156,-!p14@PAWR!0.60!2.97!PAWR;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.97!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.67!TBX3;;chr6:19837592..19837621,+!p1@ID4!0.59!21.26!ID4;;chr16:79634624..79634642,-!p1@MAF!0.59!13.35!MAF;;chr18:3451646..3451691,+!p3@TGIF1!0.59!8.90!TGIF1;;chr8:60031682..60031710,-!p2@TOX!0.59!5.19!TOX;;chr17:46127997..46128015,+!p5@NFE2L1!0.58!4.20!NFE2L1;;chr5:72744562..72744573,-!p3@FOXD1!0.58!3.71!FOXD1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!174.82!NFE2L1;;chr7:28220354..28220441,-!p1@JAZF1!0.57!52.92!JAZF1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.55!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.57!5.44!ZFP106;;chr2:119604456..119604501,-!p2@EN1!0.57!2.72!EN1;;chr10:31607811..31607837,+!p6@ZEB1!0.57!2.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11303-117B7
 |is_a=EFO:0002091;;FF:0000063
 |is_obsolete=
 |library_id=CNhs11952
-|library_ids=CNhs11952
+|library_id_phase_based=2:CNhs11952
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11303
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11303
 |name=Fibroblast - Gingival, donor5 (GFH3)
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11952,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11303-117B7;search_select_hide=table117:FF:11303-117B7
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FF:11303-117B7: Difference between revisions

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Latest revision as of 16:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0