FF:11920-125H3: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13812
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	67-68
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004761

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13812		CAGE		DRX008183		DRR009055

Accession ID Hg19

Library id		BAM		CTSS
CNhs13812		DRZ000480		DRZ001865

Accession ID Hg38

Library id		BAM		CTSS
CNhs13812		DRZ011830		DRZ013215

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.386
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0595
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.18
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.143
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.155
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0531
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.879
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.144
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.143
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.362
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.142
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.655
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0752
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.143
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0511
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0715
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.1
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.143
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.14
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0531
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.1
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.938
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.603
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.465
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.511
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.1
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.426
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.373
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.386
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0531
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.219
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.156
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.1
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.291
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.218
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0531
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.661
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.87
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.1
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0531
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13812

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.34806e-5
MA0003.1	MA0003.1	0.936
MA0004.1	MA0004.1	0.97
MA0006.1	MA0006.1	0.593
MA0007.1	MA0007.1	0.754
MA0009.1	MA0009.1	0.549
MA0014.1	MA0014.1	0.857
MA0017.1	MA0017.1	0.138
MA0018.2	MA0018.2	0.271
MA0019.1	MA0019.1	0.114
MA0024.1	MA0024.1	0.341
MA0025.1	MA0025.1	0.286
MA0027.1	MA0027.1	0.708
MA0028.1	MA0028.1	8.46041e-4
MA0029.1	MA0029.1	0.456
MA0030.1	MA0030.1	0.445
MA0031.1	MA0031.1	0.593
MA0035.2	MA0035.2	0.197
MA0038.1	MA0038.1	0.0368
MA0039.2	MA0039.2	0.972
MA0040.1	MA0040.1	0.241
MA0041.1	MA0041.1	0.238
MA0042.1	MA0042.1	0.469
MA0043.1	MA0043.1	0.335
MA0046.1	MA0046.1	0.0419
MA0047.2	MA0047.2	0.921
MA0048.1	MA0048.1	0.969
MA0050.1	MA0050.1	2.55764e-10
MA0051.1	MA0051.1	0.00108
MA0052.1	MA0052.1	0.00643
MA0055.1	MA0055.1	0.792
MA0057.1	MA0057.1	0.708
MA0058.1	MA0058.1	0.881
MA0059.1	MA0059.1	0.428
MA0060.1	MA0060.1	0.324
MA0061.1	MA0061.1	5.318e-4
MA0062.2	MA0062.2	1.10955e-10
MA0065.2	MA0065.2	0.0564
MA0066.1	MA0066.1	0.372
MA0067.1	MA0067.1	0.457
MA0068.1	MA0068.1	0.383
MA0069.1	MA0069.1	0.682
MA0070.1	MA0070.1	0.513
MA0071.1	MA0071.1	0.551
MA0072.1	MA0072.1	0.534
MA0073.1	MA0073.1	0.896
MA0074.1	MA0074.1	0.74
MA0076.1	MA0076.1	7.63918e-5
MA0077.1	MA0077.1	0.0263
MA0078.1	MA0078.1	0.701
MA0079.2	MA0079.2	0.395
MA0080.2	MA0080.2	1.75112e-10
MA0081.1	MA0081.1	0.0571
MA0083.1	MA0083.1	0.134
MA0084.1	MA0084.1	0.934
MA0087.1	MA0087.1	0.404
MA0088.1	MA0088.1	0.238
MA0090.1	MA0090.1	1.78624e-4
MA0091.1	MA0091.1	0.971
MA0092.1	MA0092.1	0.974
MA0093.1	MA0093.1	0.907
MA0099.2	MA0099.2	0.006
MA0100.1	MA0100.1	0.901
MA0101.1	MA0101.1	0.101
MA0102.2	MA0102.2	0.445
MA0103.1	MA0103.1	0.0451
MA0104.2	MA0104.2	0.288
MA0105.1	MA0105.1	4.08503e-8
MA0106.1	MA0106.1	0.826
MA0107.1	MA0107.1	0.257
MA0108.2	MA0108.2	1.8393e-10
MA0111.1	MA0111.1	0.0579
MA0112.2	MA0112.2	0.105
MA0113.1	MA0113.1	0.629
MA0114.1	MA0114.1	0.187
MA0115.1	MA0115.1	0.956
MA0116.1	MA0116.1	2.48093e-6
MA0117.1	MA0117.1	0.55
MA0119.1	MA0119.1	0.954
MA0122.1	MA0122.1	0.771
MA0124.1	MA0124.1	0.274
MA0125.1	MA0125.1	0.41
MA0131.1	MA0131.1	0.368
MA0135.1	MA0135.1	0.0419
MA0136.1	MA0136.1	1.33868e-17
MA0137.2	MA0137.2	0.258
MA0138.2	MA0138.2	0.229
MA0139.1	MA0139.1	0.0517
MA0140.1	MA0140.1	0.397
MA0141.1	MA0141.1	0.506
MA0142.1	MA0142.1	0.416
MA0143.1	MA0143.1	0.0874
MA0144.1	MA0144.1	0.329
MA0145.1	MA0145.1	0.705
MA0146.1	MA0146.1	0.0982
MA0147.1	MA0147.1	0.247
MA0148.1	MA0148.1	0.586
MA0149.1	MA0149.1	0.0375
MA0150.1	MA0150.1	0.798
MA0152.1	MA0152.1	0.0413
MA0153.1	MA0153.1	0.0763
MA0154.1	MA0154.1	0.023
MA0155.1	MA0155.1	0.69
MA0156.1	MA0156.1	6.44475e-13
MA0157.1	MA0157.1	0.287
MA0159.1	MA0159.1	0.228
MA0160.1	MA0160.1	0.393
MA0162.1	MA0162.1	0.568
MA0163.1	MA0163.1	5.4441e-11
MA0164.1	MA0164.1	0.838
MA0258.1	MA0258.1	0.0388
MA0259.1	MA0259.1	0.445

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13812

Novel motif	Logo	P-value
1	1	0.0883
10	10	0.00689
100	100	0.441
101	101	0.0573
102	102	0.434
103	103	0.49
104	104	0.707
105	105	0.334
106	106	0.332
107	107	0.664
108	108	0.72
109	109	0.0452
11	11	0.0284
110	110	0.353
111	111	0.133
112	112	0.181
113	113	0.312
114	114	0.23
115	115	0.584
116	116	0.449
117	117	0.00208
118	118	0.401
119	119	0.44
12	12	0.585
120	120	0.43
121	121	0.389
122	122	0.699
123	123	2.24352e-7
124	124	0.234
125	125	0.908
126	126	0.459
127	127	0.734
128	128	0.597
129	129	0.63
13	13	0.322
130	130	0.509
131	131	0.759
132	132	0.881
133	133	0.175
134	134	0.729
135	135	0.71
136	136	0.662
137	137	0.0437
138	138	0.21
139	139	0.153
14	14	0.276
140	140	0.127
141	141	0.367
142	142	0.811
143	143	0.0118
144	144	0.391
145	145	0.172
146	146	0.706
147	147	0.0974
148	148	0.0421
149	149	0.909
15	15	0.204
150	150	0.458
151	151	0.556
152	152	0.606
153	153	0.939
154	154	0.418
155	155	0.0446
156	156	0.508
157	157	0.113
158	158	0.226
159	159	0.671
16	16	0.609
160	160	0.429
161	161	0.165
162	162	0.381
163	163	0.54
164	164	0.0848
165	165	0.233
166	166	0.857
167	167	0.239
168	168	0.989
169	169	0.12
17	17	0.715
18	18	0.718
19	19	0.689
2	2	0.796
20	20	0.48
21	21	0.222
22	22	0.821
23	23	0.941
24	24	0.973
25	25	0.149
26	26	0.0357
27	27	0.368
28	28	0.519
29	29	0.0186
3	3	0.0289
30	30	0.0678
31	31	0.908
32	32	0.507
33	33	0.546
34	34	0.926
35	35	0.322
36	36	0.0163
37	37	0.156
38	38	0.598
39	39	0.622
4	4	0.844
40	40	0.199
41	41	0.675
42	42	0.0796
43	43	0.317
44	44	0.363
45	45	0.434
46	46	0.125
47	47	0.0123
48	48	0.0616
49	49	0.0937
5	5	0.828
50	50	0.774
51	51	0.644
52	52	0.51
53	53	0.143
54	54	0.751
55	55	0.756
56	56	0.461
57	57	0.21
58	58	0.119
59	59	0.489
6	6	0.338
60	60	0.379
61	61	0.135
62	62	0.0631
63	63	0.439
64	64	0.161
65	65	0.694
66	66	0.611
67	67	0.97
68	68	0.864
69	69	0.906
7	7	0.3
70	70	0.0455
71	71	0.024
72	72	0.057
73	73	0.39
74	74	0.489
75	75	0.0238
76	76	0.188
77	77	0.747
78	78	0.0527
79	79	0.793
8	8	0.501
80	80	0.295
81	81	0.321
82	82	0.0529
83	83	0.695
84	84	0.0457
85	85	0.984
86	86	0.122
87	87	0.54
88	88	0.844
89	89	0.376
9	9	0.96
90	90	0.0202
91	91	0.477
92	92	0.303
93	93	0.501
94	94	0.133
95	95	0.018
96	96	0.0798
97	97	0.224
98	98	0.119
99	99	0.059

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13812

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008076
+|DRA_sample_Accession=CAGE@SAMD00004761
-|accession_numbers=CAGE;DRX008183;DRR009055;DRZ000480;DRZ001865
+|accession_numbers=CAGE;DRX008183;DRR009055;DRZ000480;DRZ001865;DRZ011830;DRZ013215
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.60!397.72!FOXP3;;chr10:8096631..8096660,+!p1@GATA3!1.89!91.43!GATA3;;chr14:75988831..75988847,+!p2@BATF!1.88!74.78!BATF;;chr17:37934204..37934241,-!p3@IKZF3!1.84!68.93!IKZF3;;chr16:79634624..79634642,-!p1@MAF!1.83!248.02!MAF;;chr10:8096772..8096787,+!p2@GATA3!1.83!78.30!GATA3;;chr17:37934365..37934387,-!p2@IKZF3!1.82!65.68!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.86!IKZF1;;chr16:79634595..79634620,-!p2@MAF!1.78!105.22!MAF;;chr14:75988771..75988826,+!p1@BATF!1.77!75.30!BATF;;chr2:231090433..231090469,+!p1@SP140!1.65!43.18!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.53!59.83!RUNX3;;chr19:19779619..19779670,+!p1@ZNF101!1.51!86.10!ZNF101;;chr20:50159198..50159299,-!p1@NFATC2!1.47!40.71!NFATC2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.35!ZBP1;;chr3:18486354..18486377,-!p2@SATB1!1.46!34.86!SATB1;;chrY:21906594..21906622,-!p1@KDM5D!1.44!26.79!KDM5D;;chr10:35484053..35484076,+!p1@CREM!1.42!61.65!CREM;;chr15:60884706..60884743,-!p1@RORA!1.41!122.65!RORA;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.95!AKNA;;chr17:38020392..38020477,-!p1@IKZF3!1.39!23.41!IKZF3;;chr2:192015701..192015743,-!p1@STAT4!1.36!29.91!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.36!21.85!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.33!IKZF1;;chr6:391743..391759,+!p1@IRF4!1.33!20.29!IRF4;;chr19:19729477..19729542,-!p1@PBX4!1.32!41.75!PBX4;;chr2:192015750..192015793,-!p2@STAT4!1.31!25.88!STAT4;;chr17:37934280..37934299,-!p6@IKZF3!1.30!18.73!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.29!18.47!IKZF1;;chr19:16435625..16435682,+!p1@KLF2!1.28!564.59!KLF2;;chr12:56415246..56415286,+!p2@IKZF4!1.28!18.08!IKZF4;;chr7:50348268..50348366,+!p4@IKZF1!1.28!18.08!IKZF1;;chr20:56195525..56195556,-!p2@ZBP1!1.28!18.08!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.27!17.56!ZBTB32;;chr1:92951607..92951661,-!p1@GFI1!1.27!17.43!GFI1;;chr6:106546808..106546833,+!p3@PRDM1!1.26!21.46!PRDM1;;chr16:88752889..88752921,-!p1@SNAI3!1.26!20.16!SNAI3;;chr3:12330560..12330579,+!p1@PPARG!1.25!19.25!PPARG;;chr14:99738138..99738163,-!p1@BCL11B!1.24!16.52!BCL11B;;chr7:50344289..50344323,+!p1@IKZF1!1.24!16.26!IKZF1;;chr19:19779686..19779697,+!p3@ZNF101!1.22!18.21!ZNF101;;chr16:79634581..79634592,-!p4@MAF!1.22!15.74!MAF;;chr16:68119324..68119364,+!p1@NFATC3!1.20!65.03!NFATC3;;chr17:45810594..45810608,+!p1@TBX21!1.18!14.18!TBX21;;chr17:38020557..38020572,-!p4@IKZF3!1.14!12.75!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.36!ATXN7;;chr3:141105705..141105770,+!p4@ZBTB38!1.12!14.70!ZBTB38;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.97!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.10!22.37!MAF;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.31!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.08!15.22!FOXP1;;chr3:18480217..18480239,-!p3@SATB1!1.08!11.06!SATB1;;chr17:37934188..37934202,-!p8@IKZF3!1.07!10.79!IKZF3;;chr12:56415287..56415300,+!p5@IKZF4!1.07!10.66!IKZF4;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.15!PHTF2;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.51!E2F2;;chr11:47236584..47236679,+!p1@DDB2!1.04!109.38!DDB2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.71!GATA3;;chr8:60031619..60031676,-!p1@TOX!1.01!20.16!TOX;;chr2:97202991..97203043,+!p3@ARID5A!1.01!9.23!ARID5A;;chr17:38020516..38020544,-!p5@IKZF3!1.00!8.97!IKZF3;;chr4:185395633..185395651,-!p2@IRF2!0.98!13.79!IRF2;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.76!HIC1;;chr10:104154246..104154347,+!p3@NFKB2!0.96!50.98!NFKB2;;chr14:75988851..75988862,+!p3@BATF!0.96!8.19!BATF;;chr16:88752861..88752884,-!p2@SNAI3!0.96!8.06!SNAI3;;chr5:131826457..131826514,-!p1@IRF1!0.95!322.68!IRF1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.80!HOPX;;chr9:20621927..20621996,-!p3@MLLT3!0.92!12.49!MLLT3;;chr2:242556880..242556899,-!p5@THAP4!0.92!7.28!THAP4;;chr3:48282587..48282603,+!p1@ZNF589!0.90!32.12!ZNF589;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.88!RUNX1;;chr6:106546786..106546802,+!p6@PRDM1!0.90!7.02!PRDM1;;chr14:99737850..99737852,-!p3@BCL11B!0.90!7.02!BCL11B;;chr11:128392085..128392232,-!p1@ETS1!0.89!240.09!ETS1;;chr6:106546834..106546850,+!p4@PRDM1!0.89!6.76!PRDM1;;chr6:106547079..106547114,+!p9@PRDM1!0.88!6.63!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.88!6.63!CREB3L2;;chr17:56565257..56565283,-!p2@HSF5!0.88!6.63!HSF5;;chr1:25291475..25291511,-!p2@RUNX3!0.88!6.50!RUNX3;;chr10:8097321..8097348,+!p4@GATA3!0.88!6.50!GATA3;;chr11:128563948..128564003,+!p1@FLI1!0.87!81.81!FLI1;;chr14:99738059..99738086,-!p2@BCL11B!0.87!6.37!BCL11B;;chr21:36421147..36421193,-!p10@RUNX1!0.87!6.37!RUNX1;;chr7:50343864..50343888,+!p7@IKZF1!0.87!6.37!IKZF1;;chr11:111249993..111250006,-!p1@POU2AF1!0.86!6.24!POU2AF1;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.24!GFI1;;chr9:20622444..20622468,-!p2@MLLT3!0.85!20.94!MLLT3;;chr6:106546731..106546755,+!p5@PRDM1!0.85!6.11!PRDM1;;chr10:35484804..35484902,+!p2@CREM!0.84!24.19!CREM;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.30!POU2F2;;chr2:214015343..214015366,-!p3@IKZF2!0.84!5.98!IKZF2;;chr11:67007548..67007610,+!p3@KDM2A!0.83!45.65!KDM2A;;chr6:106534192..106534224,+!p1@PRDM1!0.82!16.78!PRDM1;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.62!RUNX2;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.02!IRF2;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.46!ZFY;;chr1:158978768..158978800,+!p8@IFI16!0.81!5.46!IFI16;;chr10:35484090..35484104,+!p6@CREM!0.81!5.46!CREM;;chr2:238600933..238600985,+!p3@LRRFIP1!0.80!31.21!LRRFIP1;;chr4:81104895..81104920,+!p2@PRDM8!0.79!7.93!PRDM8;;chr2:242556900..242556916,-!p6@THAP4!0.79!5.20!THAP4;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.72!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.78!23.02!ETS1;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.07!HOXB2;;chr15:31619326..31619390,+!p2@KLF13!0.77!61.65!KLF13;;chr15:74833584..74833626,+!p1@ARID3B!0.77!12.10!ARID3B;;chr11:615570..615721,-!p2@IRF7!0.77!10.14!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.77!8.06!IRF5;;chr7:50344144..50344157,+!p6@IKZF1!0.77!4.94!IKZF1;;chr16:89787937..89787971,+!p1@ZNF276!0.76!13.40!ZNF276;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.59!HOPX;;chr2:231084659..231084721,-!p1@SP110!0.75!119.00!SP110;;chr7:139762641..139762768,-!p1@PARP12!0.75!70.62!PARP12;;chr6:15249128..15249177,+!p4@JARID2!0.75!8.71!JARID2;;chr4:57522674..57522699,-!p5@HOPX!0.75!4.68!HOPX;;chr2:97202480..97202499,+!p1@ARID5A!0.74!50.46!ARID5A;;chr2:148778973..148779035,+!p3@MBD5!0.74!12.62!MBD5;;chr7:21467802..21467840,+!p3@SP4!0.73!9.75!SP4;;chr14:24630902..24630948,+!p2@IRF9!0.73!5.46!IRF9;;chr16:79634464..79634493,-!p5@MAF!0.73!4.42!MAF;;chr13:41240737..41240787,-!p1@FOXO1!0.72!56.71!FOXO1;;chr10:35416142..35416169,+!p3@CREM!0.72!12.23!CREM;;chr6:45390300..45390335,+!p4@RUNX2!0.72!6.89!RUNX2;;chr10:8100691..8100732,+!p5@GATA3!0.72!4.29!GATA3;;chr17:37934268..37934277,-!p10@IKZF3!0.72!4.29!IKZF3;;chr17:40440481..40440550,+!p1@STAT5A!0.71!33.56!STAT5A;;chr3:71007344..71007348,-!p6@FOXP1!0.71!18.21!FOXP1;;chr12:46123273..46123329,+!p3@ARID2!0.71!7.54!ARID2;;chr10:3824332..3824425,-!p4@KLF6!0.71!7.15!KLF6;;chr1:44679370..44679422,+!p3@DMAP1!0.71!5.72!DMAP1;;chr19:4153613..4153652,+!p1@CREB3L3!0.71!4.16!CREB3L3;;chr2:214013461..214013517,-!p6@IKZF2!0.71!4.16!IKZF2;;chr2:231090344..231090361,-!p3@SP110!0.71!4.16!SP110;;chr1:158979686..158979745,+!p1@IFI16!0.70!150.61!IFI16;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.73!FOXN3;;chr7:148982396..148982408,+!p4@ZNF783!0.70!4.03!ZNF783;;chr20:46130672..46130686,+!p2@NCOA3!0.69!19.51!NCOA3;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.98!ZBTB16;;chr2:74741569..74741620,+!p1@TLX2!0.69!3.90!TLX2;;chr3:18480173..18480189,-!p6@SATB1!0.69!3.90!SATB1;;chr6:45389791..45389832,+!p3@RUNX2!0.68!10.53!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.11!ZBTB38;;chr6:36355513..36355578,-!p2@ETV7!0.68!4.94!ETV7;;chr17:38020481..38020506,-!p7@IKZF3!0.68!3.77!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.68!3.77!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.67!13.01!AHRR;;chr6:106534230..106534254,+!p2@PRDM1!0.67!10.14!PRDM1;;chr14:64970670..64970712,-!p3@ZBTB25!0.67!8.71!ZBTB25;;chr1:151319654..151319698,-!p2@RFX5!0.67!8.71!RFX5;;chr9:20622478..20622525,-!p1@MLLT3!0.66!32.38!MLLT3;;chr4:185395191..185395226,-!p4@IRF2!0.66!5.20!IRF2;;chr2:178128250..178128293,-!p6@NFE2L2!0.65!9.88!NFE2L2;;chr17:46621101..46621143,-!p7@HOXB2!0.65!4.94!HOXB2;;chr12:72056800..72056834,+!p1@THAP2!0.65!4.94!THAP2;;chr11:47237922..47237964,+!p4@DDB2!0.65!4.16!DDB2;;chr4:81104865..81104886,+!p6@PRDM8!0.65!3.77!PRDM8;;chr15:60884747..60884774,-!p3@RORA!0.64!9.36!RORA;;chr1:154975110..154975149,+!p2@ZBTB7B!0.64!7.93!ZBTB7B;;chr2:214015111..214015179,-!p1@IKZF2!0.64!6.50!IKZF2;;chr17:36861735..36861755,+!p4@MLLT6!0.64!6.24!MLLT6;;chr17:46621311..46621332,-!p8@HOXB2!0.64!4.55!HOXB2;;chr21:36421347..36421380,-!p8@RUNX1!0.64!3.38!RUNX1;;chr19:52674696..52674758,-!p1@ZNF836!0.63!10.92!ZNF836;;chr20:44600199..44600219,-!p3@ZNF335!0.63!4.68!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.63!4.29!AKNA;;chr4:57522513..57522548,-!p4@HOPX!0.63!3.25!HOPX;;chr17:41738709..41738733,-!p3@MEOX1!0.63!3.25!MEOX1;;chr19:16435705..16435726,+!p3@KLF2!0.63!3.25!KLF2;;chr16:68118689..68118733,+!p3@NFATC3!0.62!9.10!NFATC3;;chr19:45972701..45972774,+!p2@FOSB!0.62!4.55!FOSB;;chr17:41738750..41738764,-!p4@MEOX1!0.62!3.12!MEOX1;;chr10:104154415..104154434,+!p5@NFKB2!0.62!3.12!NFKB2;;chr11:128331703..128331717,-!p8@ETS1!0.62!3.12!ETS1;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.58!MXD3;;chr10:104155480..104155534,+!p2@NFKB2!0.61!23.54!NFKB2;;chr6:91006518..91006570,-!p1@BACH2!0.61!7.93!BACH2;;chr3:71179699..71179744,-!p2@FOXP1!0.60!26.66!FOXP1;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.42!ZNF92;;chr6:20403916..20403965,+!p3@E2F3!0.60!15.74!E2F3;;chr3:18466787..18466839,-!p1@SATB1!0.60!15.74!SATB1;;chr7:21467674..21467727,+!p1@SP4!0.60!14.05!SP4;;chr6:36355431..36355466,-!p1@ETV7!0.60!2.99!ETV7;;chr17:37934392..37934398,-!p11@IKZF3!0.60!2.99!IKZF3;;chr11:615942..615957,-!p1@IRF7!0.59!33.04!IRF7;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.45!ZNF655;;chr9:3525727..3525828,-!p2@RFX3!0.59!8.58!RFX3;;chr11:128392309..128392350,-!p3@ETS1!0.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11920-125H3
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13812
-|library_ids=CNhs13812
+|library_id_phase_based=2:CNhs13812
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11920
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11920
 |name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3
 |namespace=
@@ Line 51: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11920-125H3;search_select_hide=table117:FF:11920-125H3
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FF:11920-125H3: Difference between revisions

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Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0