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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007671
|DRA_sample_Accession=CAGE@SAMD00005328
|accession_numbers=CAGE;DRX007776;DRR008648;DRZ000073;DRZ001458
|accession_numbers=CAGE;DRX007776;DRR008648;DRZ000073;DRZ001458;DRZ011423;DRZ012808
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.60!395.59!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.46!288.23!PLEK;;chr11:111249993..111250006,-!p1@POU2AF1!2.37!235.43!POU2AF1;;chr16:85932760..85932775,+!p1@IRF8!2.07!117.22!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.05!111.79!SPIB;;chr1:25291475..25291511,-!p2@RUNX3!2.04!107.59!RUNX3;;chr12:103351444..103351461,+!p1@ASCL1!1.89!77.41!ASCL1;;chr17:38020392..38020477,-!p1@IKZF3!1.84!68.31!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.83!67.01!SP140;;chr3:27763807..27763822,-!p1@EOMES!1.77!57.46!EOMES;;chr1:25256756..25256774,-!p1@RUNX3!1.72!94.52!RUNX3;;chr2:231090471..231090504,+!p2@SP140!1.71!50.20!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.69!47.53!PLEK;;chr7:28610099..28610113,+!p5@CREB5!1.69!47.53!CREB5;;chr19:36204309..36204335,+!p1@ZBTB32!1.59!38.28!ZBTB32;;chr10:64576105..64576133,-!p1@EGR2!1.56!71.68!EGR2;;chr1:158978768..158978800,+!p8@IFI16!1.53!33.09!IFI16;;chr8:76319876..76319926,+!p1@HNF4G!1.52!32.40!HNF4G;;chr17:36105042..36105060,-!p1@HNF1B!1.50!30.72!HNF1B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!27.81!ZBED1;;chr14:75988771..75988826,+!p1@BATF!1.45!35.76!BATF;;chr3:27764190..27764208,-!p2@EOMES!1.43!25.67!EOMES;;chr5:88120151..88120177,-!p6@MEF2C!1.42!25.52!MEF2C;;chr11:61520075..61520136,+!p1@C11orf9!1.41!50.97!C11orf9;;chr19:42636586..42636607,-!p1@POU2F2!1.40!65.94!POU2F2;;chr20:50159198..50159299,-!p1@NFATC2!1.40!34.77!NFATC2;;chr11:47400078..47400106,-!p1@SPI1!1.40!24.38!SPI1;;chr1:3569072..3569093,+!p1@TP73!1.40!24.15!TP73;;chr12:103352277..103352324,+!p2@ASCL1!1.38!23.08!ASCL1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.34!20.94!MEF2B;;chr4:185395590..185395627,-!p3@IRF2!1.32!24.61!IRF2;;chr7:50348268..50348366,+!p4@IKZF1!1.32!19.71!IKZF1;;chr5:142780237..142780261,-!p7@NR3C1!1.31!19.64!NR3C1;;chr3:189349162..189349207,+!p2@TP63!1.31!19.64!TP63;;chr9:37034469..37034474,-!p1@PAX5!1.30!19.10!PAX5;;chr17:45810594..45810608,+!p1@TBX21!1.27!17.80!TBX21;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.26!EBF1;;chr8:76319850..76319870,+!p4@HNF4G!1.26!17.12!HNF4G;;chr18:52989031..52989079,-!p2@TCF4!1.24!38.59!TCF4;;chr7:28610060..28610073,+!p9@CREB5!1.24!16.28!CREB5;;chr5:133450365..133450444,+!p1@TCF7!1.21!68.70!TCF7;;chr3:101546827..101546847,+!p2@NFKBIZ!1.21!21.24!NFKBIZ;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.21!IKZF2;;chr8:72756637..72756664,-!p3@MSC!1.20!17.04!MSC;;chr13:41593425..41593480,-!p1@ELF1!1.18!88.56!ELF1;;chr8:72756667..72756736,-!p2@MSC!1.18!22.24!MSC;;chr11:615570..615721,-!p2@IRF7!1.16!26.52!IRF7;;chr14:75988831..75988847,+!p2@BATF!1.16!13.45!BATF;;chr12:54447599..54447630,+!p3@HOXC4!1.15!15.97!HOXC4;;chr9:1050331..1050363,+!p1@DMRT2!1.14!12.91!DMRT2;;chr2:68615031..68615055,+!p3@PLEK!1.13!12.61!PLEK;;chr2:214015343..214015366,-!p3@IKZF2!1.13!12.38!IKZF2;;chr6:34204973..34204990,+!p4@HMGA1!1.11!159.70!HMGA1;;chr5:142780189..142780223,-!p6@NR3C1!1.11!12.00!NR3C1;;chr9:126774018..126774055,+!p1@LHX2!1.11!11.92!LHX2;;chr20:62680984..62680999,-!p1@SOX18!1.10!15.44!SOX18;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.26!MEF2C;;chr19:45579725..45579743,-!p1@ZNF296!1.09!51.66!ZNF296;;chr7:128577972..128578047,+!p1@IRF5!1.09!18.03!IRF5;;chr8:135614084..135614119,-!p4@ZFAT!1.08!11.16!ZFAT;;chr16:85936412..85936431,+!p2@IRF8!1.08!11.16!IRF8;;chr1:170632115..170632136,+!p9@PRRX1!1.08!11.08!PRRX1;;chr7:50343634..50343717,+!p2@IKZF1!1.08!11.00!IKZF1;;chr20:42543441..42543497,+!p1@TOX2!1.07!48.22!TOX2;;chr9:117150254..117150271,-!p1@AKNA!1.05!28.43!AKNA;;chr11:19262421..19262455,-!p3@E2F8!1.04!9.86!E2F8;;chr2:214016254..214016282,-!p7@IKZF2!1.03!9.63!IKZF2;;chr8:72756063..72756125,-!p1@MSC!1.02!19.33!MSC;;chr7:50344251..50344288,+!p3@IKZF1!1.02!9.55!IKZF1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.55!LHX2;;chr2:231090344..231090361,-!p3@SP110!1.02!9.48!SP110;;chr10:104155480..104155534,+!p2@NFKB2!1.01!60.75!NFKB2;;chr3:141105705..141105770,+!p4@ZBTB38!1.00!11.00!ZBTB38;;chr3:141747950..141748004,-!p7@TFDP2!1.00!9.02!TFDP2;;chr1:25291620..25291635,-!p4@RUNX3!1.00!9.02!RUNX3;;chr1:23857698..23857733,-!p1@E2F2!0.99!16.28!E2F2;;chr1:151319654..151319698,-!p2@RFX5!0.98!19.18!RFX5;;chr19:42627037..42627084,-!p3@POU2F2!0.98!8.56!POU2F2;;chr7:137620684..137620711,-!p4@CREB3L2!0.97!8.25!CREB3L2;;chr1:158979686..158979745,+!p1@IFI16!0.96!274.32!IFI16;;chr16:85936539..85936562,+!p3@IRF8!0.96!8.18!IRF8;;chr7:137620650..137620677,-!p3@CREB3L2!0.96!8.10!CREB3L2;;chr1:38512457..38512474,-!p1@POU3F1!0.95!8.79!POU3F1;;chr4:185395633..185395651,-!p2@IRF2!0.94!12.68!IRF2;;chr1:3569135..3569150,+!p3@TP73!0.94!7.79!TP73;;chr6:41700616..41700664,-!p8@TFEB!0.94!7.79!TFEB;;chr6:44233252..44233296,-!p1@NFKBIE!0.93!76.41!NFKBIE;;chr8:22550982..22550999,-!p1@EGR3!0.93!21.93!EGR3;;chr2:70314240..70314256,+!p4@PCBP1!0.93!15.89!PCBP1;;chr8:65492915..65492932,+!p1@BHLHE22!0.93!7.49!BHLHE22;;chr17:37934204..37934241,-!p3@IKZF3!0.93!7.49!IKZF3;;chr12:11802753..11802834,+!p2@ETV6!0.91!36.68!ETV6;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.49!HIC1;;chr5:142780280..142780294,-!p16@NR3C1!0.91!7.11!NR3C1;;chr7:50344289..50344323,+!p1@IKZF1!0.90!7.03!IKZF1;;chr10:104154246..104154347,+!p3@NFKB2!0.89!43.17!NFKB2;;chr1:117602932..117602973,+!p1@TTF2!0.89!26.74!TTF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.62!ZNF385A;;chr6:144385698..144385742,-!p2@PLAGL1!0.89!8.33!PLAGL1;;chr6:43337124..43337144,-!p4@ZNF318!0.88!9.48!ZNF318;;chr6:135502408..135502459,+!p2@MYB!0.88!7.72!MYB;;chr1:201979703..201979721,+!p2@ELF3!0.88!6.57!ELF3;;chr15:74833584..74833626,+!p1@ARID3B!0.87!15.44!ARID3B;;chr17:36105074..36105086,-!p2@HNF1B!0.87!6.50!HNF1B;;chr1:92951607..92951661,-!p1@GFI1!0.87!6.50!GFI1;;chr17:38020557..38020572,-!p4@IKZF3!0.87!6.42!IKZF3;;chr20:42295745..42295765,+!p1@MYBL2!0.86!107.67!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.86!39.51!MYBL2;;chr5:158526756..158526797,-!p3@EBF1!0.86!6.27!EBF1;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.59!ETV4;;chr6:126240380..126240430,+!p2@NCOA7!0.85!16.58!NCOA7;;chr18:52989001..52989030,-!p10@TCF4!0.85!6.72!TCF4;;chr9:16728161..16728185,-!p4@BNC2!0.85!6.11!BNC2;;chr2:214013461..214013517,-!p6@IKZF2!0.85!6.04!IKZF2;;chr9:20622444..20622468,-!p2@MLLT3!0.84!20.17!MLLT3;;chr7:156803329..156803362,-!p1@MNX1!0.84!5.96!MNX1;;chr8:135614120..135614149,-!p5@ZFAT!0.84!5.88!ZFAT;;chr19:42636625..42636632,-!p2@POU2F2!0.84!5.88!POU2F2;;chr7:64126503..64126528,+!p1@ZNF107!0.83!44.09!ZNF107;;chr1:167298300..167298319,+!p2@POU2F1!0.83!5.73!POU2F1;;chr1:170632051..170632081,+!p16@PRRX1!0.83!5.73!PRRX1;;chr1:6884943..6884957,+!p7@CAMTA1!0.83!5.73!CAMTA1;;chr2:231084659..231084721,-!p1@SP110!0.82!140.45!SP110;;chr17:70117153..70117174,+!p1@SOX9!0.82!62.43!SOX9;;chr14:74226961..74227020,-!p1@C14orf43!0.82!39.73!C14orf43;;chr3:141103634..141103665,+!p18@ZBTB38!0.82!5.65!ZBTB38;;chr17:41739283..41739297,-!p1@MEOX1!0.82!5.58!MEOX1;;chr6:43337180..43337244,-!p1@ZNF318!0.81!22.69!ZNF318;;chr1:27023752..27023799,+!p4@ARID1A!0.81!7.34!ARID1A;;chr12:54447219..54447237,+!p6@HOXC4!0.81!5.50!HOXC4;;chr9:128509878..128509902,+!p5@PBX3!0.81!5.50!PBX3;;chr8:76452097..76452126,+!p2@HNF4G!0.81!5.43!HNF4G;;chr19:50432453..50432468,+!p1@ATF5!0.80!326.97!ATF5;;chr9:20622478..20622525,-!p1@MLLT3!0.80!45.47!MLLT3;;chr19:45252008..45252024,+!p2@BCL3!0.79!18.26!BCL3;;chr17:46655730..46655791,-!p1@HOXB4!0.79!13.68!HOXB4;;chr4:87857491..87857519,+!p10@AFF1!0.79!7.26!AFF1;;chr17:40440359..40440386,+!p4@STAT5A!0.79!5.12!STAT5A;;chr1:156460436..156460462,-!p7@MEF2D!0.79!5.12!MEF2D;;chr1:3568889..3568900,+!p7@TP73!0.79!5.12!TP73;;chr1:3569101..3569115,+!p2@TP73!0.79!5.12!TP73;;chr5:138609782..138609826,+!p5@MATR3!0.78!35.76!MATR3;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.71!BRCA1;;chr6:135502501..135502546,+!p1@MYB!0.78!6.11!MYB;;chr18:42260840..42260860,+!p2@SETBP1!0.78!4.97!SETBP1;;chr6:20402102..20402152,+!p1@E2F3!0.77!21.62!E2F3;;chr5:88179017..88179046,-!p2@MEF2C!0.77!21.24!MEF2C;;chr19:19729477..19729542,-!p1@PBX4!0.77!11.00!PBX4;;chr1:212873267..212873332,-!p1@BATF3!0.77!6.88!BATF3;;chr12:54447637..54447659,+!p4@HOXC4!0.77!4.89!HOXC4;;chr6:44228288..44228303,-!p9@NFKBIE!0.77!4.89!NFKBIE;;chr16:31885093..31885165,+!p1@ZNF267!0.76!81.23!ZNF267;;chr2:68615063..68615089,+!p4@PLEK!0.76!4.81!PLEK;;chr3:141747459..141747475,-!p1@TFDP2!0.75!42.64!TFDP2;;chr4:185395191..185395226,-!p4@IRF2!0.75!6.65!IRF2;;chr3:27761692..27761705,-!p4@EOMES!0.75!4.66!EOMES;;chr8:135613895..135613921,-!p8@ZFAT!0.75!4.66!ZFAT;;chr1:170632137..170632172,+!p10@PRRX1!0.75!4.66!PRRX1;;chr11:615942..615957,-!p1@IRF7!0.74!47.07!IRF7;;chr4:146859626..146859669,-!p2@ZNF827!0.74!6.88!ZNF827;;chr8:76452129..76452159,+!p5@HNF4G!0.74!4.51!HNF4G;;chr9:16728327..16728338,-!p5@BNC2!0.74!4.51!BNC2;;chr2:97202480..97202499,+!p1@ARID5A!0.73!49.82!ARID5A;;chr1:3568928..3568946,+!p4@TP73!0.73!4.43!TP73;;chr11:19262461..19262476,-!p5@E2F8!0.73!4.36!E2F8;;chr15:60884706..60884743,-!p1@RORA!0.72!24.53!RORA;;chr19:926001..926046,+!p1@ARID3A!0.72!16.12!ARID3A;;chr9:2015306..2015323,+!p3@SMARCA2!0.72!12.00!SMARCA2;;chr9:1050449..1050468,+!p2@DMRT2!0.72!4.20!DMRT2;;chr12:103352326..103352351,+!p3@ASCL1!0.72!4.20!ASCL1;;chr1:8484314..8484348,-!p7@RERE!0.71!12.15!RERE;;chr15:90544532..90544563,+!p1@ZNF710!0.71!8.94!ZNF710;;chr3:141121847..141121868,+!p5@ZBTB38!0.71!6.65!ZBTB38;;chr6:106546731..106546755,+!p5@PRDM1!0.71!4.13!PRDM1;;chr9:2015335..2015370,+!p1@SMARCA2!0.70!55.71!SMARCA2;;chrX:131623044..131623089,-!p1@MBNL3!0.70!18.57!MBNL3;;chr20:44600199..44600219,-!p3@ZNF335!0.70!5.65!ZNF335;;chr19:4153613..4153652,+!p1@CREB3L3!0.70!3.97!CREB3L3;;chr3:141105235..141105307,+!p7@ZBTB38!0.70!3.97!ZBTB38;;chr14:55493763..55493824,-!p1@WDHD1!0.69!33.55!WDHD1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.69!19.79!TAL1;;chr20:6748325..6748352,+!p1@BMP2!0.69!5.96!BMP2;;chr1:3568911..3568925,+!p9@TP73!0.69!3.90!TP73;;chr2:8822176..8822196,+!p1@ID2!0.68!611.77!ID2;;chr9:3525910..3525955,-!p4@RFX3!0.68!12.76!RFX3;;chr1:170632285..170632309,+!p1@PRRX1!0.68!4.36!PRRX1;;chr2:63277948..63277974,+!p1@OTX1!0.67!3.67!OTX1;;ch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Line 40: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep1.CNhs12331.10821-111C2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep1.CNhs12331.10821-111C2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep1.CNhs12331.10821-111C2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep1.CNhs12331.10821-111C2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep1.CNhs12331.10821-111C2.hg38.nobarcode.ctss.bed.gz
|id=FF:10821-111C2
|id=FF:10821-111C2
|is_a=EFO:0002091;;FF:0000210;;FF:0102062
|is_a=EFO:0002091;;FF:0000210;;FF:0102062
|is_obsolete=
|is_obsolete=
|library_id=CNhs12331
|library_id=CNhs12331
|library_ids=CNhs12331
|library_id_phase_based=2:CNhs12331
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10821
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10821
|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1
|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12331,LSID913,release011,COMPLETED
|profile_hcage=CNhs12331,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 89: Line 100:
|top_motifs=POU2F1..3:2.30151557705;POU5F1:2.08364093128;HOXA9_MEIS1:2.06617446378;NFKB1_REL_RELA:2.0340936833;DMAP1_NCOR{1,2}_SMARC:1.70464573613;PDX1:1.69355208802;IRF7:1.67991945549;IRF1,2:1.6196388775;PAX6:1.57402117811;E2F1..5:1.53446764797;NKX6-1,2:1.53154601421;AIRE:1.51465808484;ELF1,2,4:1.50710963976;MYB:1.48905260263;NFY{A,B,C}:1.48336843295;ELK1,4_GABP{A,B1}:1.34867326674;TOPORS:1.27079193931;CDX1,2,4:1.13718769767;HIF1A:1.13623365786;PITX1..3:1.12516246202;SPI1:1.07811162702;VSX1,2:1.070601403;RUNX1..3:0.980259531774;YY1:0.942545669821;ZBTB16:0.901702908948;POU1F1:0.883937761127;PAX3,7:0.861090476292;NRF1:0.774683264693;PAX8:0.768294912388;SPIB:0.768230873271;FOXA2:0.724142650619;ETS1,2:0.664944692958;ZNF143:0.586215781571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.585562794916;EVI1:0.578430036395;OCT4_SOX2{dimer}:0.554074360956;RBPJ:0.541149596199;HNF4A_NR2F1,2:0.526739444156;FOXP3:0.522244147746;SNAI1..3:0.502796939496;FOXP1:0.479760379221;BREu{core}:0.475471649427;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.472881350211;ARID5B:0.468335967531;AHR_ARNT_ARNT2:0.442689712997;FOXN1:0.4405823606;MYOD1:0.436124137492;ALX4:0.424872813296;ZEB1:0.403645049921;NKX2-2,8:0.367941917711;NANOG{mouse}:0.356377366885;LMO2:0.346638777371;NR5A1,2:0.344499435505;STAT1,3:0.343652664638;PBX1:0.339155060758;ZNF384:0.334118016244;SPZ1:0.314033597378;POU3F1..4:0.301972098291;HNF1A:0.29621437774;GATA6:0.244537558382;RXRA_VDR{dimer}:0.236086650012;RORA:0.232714646463;GFI1:0.224057909468;CUX2:0.198479889538;HSF1,2:0.197615773009;FOX{F1,F2,J1}:0.191726494907;ESR1:0.188662325952;ATF5_CREB3:0.185569001183;IKZF2:0.183722014627;TGIF1:0.138173642429;TP53:0.13021298251;EBF1:0.121386568656;CDC5L:0.106128301597;ESRRA:0.101613140083;CREB1:0.0896045000858;HES1:0.0790943881655;RFX2..5_RFXANK_RFXAP:0.0326650040205;TFDP1:0.0145694492496;SOX5:-0.0265882525833;SOX{8,9,10}:-0.0294776398203;PAX2:-0.0356487698104;LHX3,4:-0.0417503843582;PRRX1,2:-0.0681851622582;bHLH_family:-0.115516657894;ATF4:-0.12116720333;NR1H4:-0.125219120682;NKX3-2:-0.134004680258;PAX4:-0.156443817348;CRX:-0.205075583584;PRDM1:-0.218037378707;NR6A1:-0.223049847615;NFE2:-0.232195771397;ALX1:-0.234018929626;SRF:-0.267290224842;HAND1,2:-0.283276404507;BPTF:-0.28468904759;MEF2{A,B,C,D}:-0.289888039005;EP300:-0.310243006221;RXR{A,B,G}:-0.320370415891;NKX2-3_NKX2-5:-0.399969123918;DBP:-0.428377599631;UFEwm:-0.430433488557;TLX2:-0.443090630619;HOX{A4,D4}:-0.465681985865;FOS_FOS{B,L1}_JUN{B,D}:-0.480528799383;ONECUT1,2:-0.506359955562;TEF:-0.515511148284;LEF1_TCF7_TCF7L1,2:-0.52166756755;ADNP_IRX_SIX_ZHX:-0.531753320036;FOXQ1:-0.532288097387;NFATC1..3:-0.53628763459;TFAP4:-0.536491315694;HOX{A5,B5}:-0.53838924486;GATA4:-0.539013623059;HMGA1,2:-0.547454163184;PPARG:-0.568593074161;HBP1_HMGB_SSRP1_UBTF:-0.577045631779;FOSL2:-0.595046171828;BACH2:-0.609655457976;GLI1..3:-0.625037125398;KLF4:-0.625935981699;SOX17:-0.631505684351;GFI1B:-0.647535201212;IKZF1:-0.652276764883;ATF2:-0.670412668351;STAT2,4,6:-0.670912375871;AR:-0.682714016882;SOX2:-0.683724213773;RREB1:-0.684890422772;NKX2-1,4:-0.692926759861;ZFP161:-0.699125773591;SMAD1..7,9:-0.700639341935;CEBPA,B_DDIT3:-0.705325844886;GCM1,2:-0.756185174716;SREBF1,2:-0.760402067168;MZF1:-0.776635393088;FOXM1:-0.804040561173;NKX3-1:-0.824731007313;ZIC1..3:-0.835601117687;EGR1..3:-0.849907834962;PAX1,9:-0.859908453032;HLF:-0.874797674652;ZNF148:-0.875465676249;ZNF423:-0.882937654491;MYBL2:-0.890678780234;NFIL3:-0.907074869257;XCPE1{core}:-0.913769635178;HOX{A6,A7,B6,B7}:-0.921675786038;TAL1_TCF{3,4,12}:-0.938339869095;MYFfamily:-0.945799503784;MTF1:-0.951649609659;NFE2L1:-0.953544095458;FOXD3:-0.973768246519;STAT5{A,B}:-0.978216046772;EN1,2:-0.978922181088;NFIX:-0.985588041258;NHLH1,2:-0.997141009026;MTE{core}:-1.05876297818;RFX1:-1.05930740569;FOXO1,3,4:-1.06593389542;GTF2I:-1.09007135543;REST:-1.09575237094;HIC1:-1.12014607275;TBX4,5:-1.1511847893;TFCP2:-1.16692019084;TBP:-1.18468252249;JUN:-1.19084836748;TFAP2{A,C}:-1.20416131274;T:-1.26437579519;NFE2L2:-1.27296059266;MAFB:-1.28862710194;MED-1{core}:-1.29285050559;PAX5:-1.29937083569;PATZ1:-1.32027730193;GTF2A1,2:-1.398656519;ATF6:-1.44177580126;NANOG:-1.44513552895;HMX1:-1.45211728268;ZNF238:-1.47843747883;MAZ:-1.49919773716;XBP1:-1.508255553;ZBTB6:-1.53106261566;POU6F1:-1.54602585759;SP1:-1.56632362375;TLX1..3_NFIC{dimer}:-1.59610391045;GZF1:-1.6211028518;TEAD1:-1.62386607827;TFAP2B:-1.78351770508;NR3C1:-1.80161616989;FOX{D1,D2}:-1.8019984133;FOX{I1,J2}:-2.26010040779;FOXL1:-2.73939779279
|top_motifs=POU2F1..3:2.30151557705;POU5F1:2.08364093128;HOXA9_MEIS1:2.06617446378;NFKB1_REL_RELA:2.0340936833;DMAP1_NCOR{1,2}_SMARC:1.70464573613;PDX1:1.69355208802;IRF7:1.67991945549;IRF1,2:1.6196388775;PAX6:1.57402117811;E2F1..5:1.53446764797;NKX6-1,2:1.53154601421;AIRE:1.51465808484;ELF1,2,4:1.50710963976;MYB:1.48905260263;NFY{A,B,C}:1.48336843295;ELK1,4_GABP{A,B1}:1.34867326674;TOPORS:1.27079193931;CDX1,2,4:1.13718769767;HIF1A:1.13623365786;PITX1..3:1.12516246202;SPI1:1.07811162702;VSX1,2:1.070601403;RUNX1..3:0.980259531774;YY1:0.942545669821;ZBTB16:0.901702908948;POU1F1:0.883937761127;PAX3,7:0.861090476292;NRF1:0.774683264693;PAX8:0.768294912388;SPIB:0.768230873271;FOXA2:0.724142650619;ETS1,2:0.664944692958;ZNF143:0.586215781571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.585562794916;EVI1:0.578430036395;OCT4_SOX2{dimer}:0.554074360956;RBPJ:0.541149596199;HNF4A_NR2F1,2:0.526739444156;FOXP3:0.522244147746;SNAI1..3:0.502796939496;FOXP1:0.479760379221;BREu{core}:0.475471649427;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.472881350211;ARID5B:0.468335967531;AHR_ARNT_ARNT2:0.442689712997;FOXN1:0.4405823606;MYOD1:0.436124137492;ALX4:0.424872813296;ZEB1:0.403645049921;NKX2-2,8:0.367941917711;NANOG{mouse}:0.356377366885;LMO2:0.346638777371;NR5A1,2:0.344499435505;STAT1,3:0.343652664638;PBX1:0.339155060758;ZNF384:0.334118016244;SPZ1:0.314033597378;POU3F1..4:0.301972098291;HNF1A:0.29621437774;GATA6:0.244537558382;RXRA_VDR{dimer}:0.236086650012;RORA:0.232714646463;GFI1:0.224057909468;CUX2:0.198479889538;HSF1,2:0.197615773009;FOX{F1,F2,J1}:0.191726494907;ESR1:0.188662325952;ATF5_CREB3:0.185569001183;IKZF2:0.183722014627;TGIF1:0.138173642429;TP53:0.13021298251;EBF1:0.121386568656;CDC5L:0.106128301597;ESRRA:0.101613140083;CREB1:0.0896045000858;HES1:0.0790943881655;RFX2..5_RFXANK_RFXAP:0.0326650040205;TFDP1:0.0145694492496;SOX5:-0.0265882525833;SOX{8,9,10}:-0.0294776398203;PAX2:-0.0356487698104;LHX3,4:-0.0417503843582;PRRX1,2:-0.0681851622582;bHLH_family:-0.115516657894;ATF4:-0.12116720333;NR1H4:-0.125219120682;NKX3-2:-0.134004680258;PAX4:-0.156443817348;CRX:-0.205075583584;PRDM1:-0.218037378707;NR6A1:-0.223049847615;NFE2:-0.232195771397;ALX1:-0.234018929626;SRF:-0.267290224842;HAND1,2:-0.283276404507;BPTF:-0.28468904759;MEF2{A,B,C,D}:-0.289888039005;EP300:-0.310243006221;RXR{A,B,G}:-0.320370415891;NKX2-3_NKX2-5:-0.399969123918;DBP:-0.428377599631;UFEwm:-0.430433488557;TLX2:-0.443090630619;HOX{A4,D4}:-0.465681985865;FOS_FOS{B,L1}_JUN{B,D}:-0.480528799383;ONECUT1,2:-0.506359955562;TEF:-0.515511148284;LEF1_TCF7_TCF7L1,2:-0.52166756755;ADNP_IRX_SIX_ZHX:-0.531753320036;FOXQ1:-0.532288097387;NFATC1..3:-0.53628763459;TFAP4:-0.536491315694;HOX{A5,B5}:-0.53838924486;GATA4:-0.539013623059;HMGA1,2:-0.547454163184;PPARG:-0.568593074161;HBP1_HMGB_SSRP1_UBTF:-0.577045631779;FOSL2:-0.595046171828;BACH2:-0.609655457976;GLI1..3:-0.625037125398;KLF4:-0.625935981699;SOX17:-0.631505684351;GFI1B:-0.647535201212;IKZF1:-0.652276764883;ATF2:-0.670412668351;STAT2,4,6:-0.670912375871;AR:-0.682714016882;SOX2:-0.683724213773;RREB1:-0.684890422772;NKX2-1,4:-0.692926759861;ZFP161:-0.699125773591;SMAD1..7,9:-0.700639341935;CEBPA,B_DDIT3:-0.705325844886;GCM1,2:-0.756185174716;SREBF1,2:-0.760402067168;MZF1:-0.776635393088;FOXM1:-0.804040561173;NKX3-1:-0.824731007313;ZIC1..3:-0.835601117687;EGR1..3:-0.849907834962;PAX1,9:-0.859908453032;HLF:-0.874797674652;ZNF148:-0.875465676249;ZNF423:-0.882937654491;MYBL2:-0.890678780234;NFIL3:-0.907074869257;XCPE1{core}:-0.913769635178;HOX{A6,A7,B6,B7}:-0.921675786038;TAL1_TCF{3,4,12}:-0.938339869095;MYFfamily:-0.945799503784;MTF1:-0.951649609659;NFE2L1:-0.953544095458;FOXD3:-0.973768246519;STAT5{A,B}:-0.978216046772;EN1,2:-0.978922181088;NFIX:-0.985588041258;NHLH1,2:-0.997141009026;MTE{core}:-1.05876297818;RFX1:-1.05930740569;FOXO1,3,4:-1.06593389542;GTF2I:-1.09007135543;REST:-1.09575237094;HIC1:-1.12014607275;TBX4,5:-1.1511847893;TFCP2:-1.16692019084;TBP:-1.18468252249;JUN:-1.19084836748;TFAP2{A,C}:-1.20416131274;T:-1.26437579519;NFE2L2:-1.27296059266;MAFB:-1.28862710194;MED-1{core}:-1.29285050559;PAX5:-1.29937083569;PATZ1:-1.32027730193;GTF2A1,2:-1.398656519;ATF6:-1.44177580126;NANOG:-1.44513552895;HMX1:-1.45211728268;ZNF238:-1.47843747883;MAZ:-1.49919773716;XBP1:-1.508255553;ZBTB6:-1.53106261566;POU6F1:-1.54602585759;SP1:-1.56632362375;TLX1..3_NFIC{dimer}:-1.59610391045;GZF1:-1.6211028518;TEAD1:-1.62386607827;TFAP2B:-1.78351770508;NR3C1:-1.80161616989;FOX{D1,D2}:-1.8019984133;FOX{I1,J2}:-2.26010040779;FOXL1:-2.73939779279
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10821-111C2;search_select_hide=table117:FF:10821-111C2
}}
}}

Latest revision as of 15:07, 3 June 2020

Name:B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1
Species:Human (Homo sapiens)
Library ID:CNhs12331
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageNA
cell typeb cell
cell lineGM12878
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005328
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12331 CAGE DRX007776 DRR008648
Accession ID Hg19

Library idBAMCTSS
CNhs12331 DRZ000073 DRZ001458
Accession ID Hg38

Library idBAMCTSS
CNhs12331 DRZ011423 DRZ012808
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0845
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.032
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.644
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.032
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.032
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.032
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0618
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.032
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0618
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.096
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.032
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.185
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.497
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0.0618
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0287
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0713
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.032
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0418
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.032
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0618
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.648
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.159
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.032
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0618
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0234
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.227
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.032
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.032
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.13
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.032
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0.669
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0896
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.437
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0.103
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12331

Jaspar motifP-value
MA0002.20.00316
MA0003.10.868
MA0004.10.0765
MA0006.10.251
MA0007.10.391
MA0009.10.948
MA0014.10.475
MA0017.10.0117
MA0018.20.544
MA0019.10.341
MA0024.14.69627e-7
MA0025.10.116
MA0027.10.757
MA0028.12.38387e-5
MA0029.10.747
MA0030.10.0114
MA0031.10.0367
MA0035.20.928
MA0038.10.878
MA0039.20.586
MA0040.10.0654
MA0041.10.16
MA0042.10.247
MA0043.10.126
MA0046.10.00371
MA0047.20.436
MA0048.10.576
MA0050.13.62122e-19
MA0051.16.97248e-14
MA0052.10.511
MA0055.10.0336
MA0057.10.751
MA0058.10.0584
MA0059.10.00247
MA0060.10.00216
MA0061.16.21928e-14
MA0062.21.2435e-10
MA0065.20.0164
MA0066.10.444
MA0067.10.947
MA0068.10.093
MA0069.10.235
MA0070.10.352
MA0071.10.43
MA0072.10.799
MA0073.10.527
MA0074.10.89
MA0076.19.06769e-8
MA0077.10.204
MA0078.10.0976
MA0079.20.246
MA0080.21.9526e-7
MA0081.10.00808
MA0083.10.786
MA0084.10.546
MA0087.10.496
MA0088.10.0102
MA0090.15.64177e-6
MA0091.10.422
MA0092.10.583
MA0093.10.0688
MA0099.20.00546
MA0100.10.133
MA0101.12.65106e-17
MA0102.20.222
MA0103.10.0258
MA0104.20.00114
MA0105.16.74348e-12
MA0106.10.0814
MA0107.14.94278e-18
MA0108.21.09928e-7
MA0111.10.308
MA0112.20.154
MA0113.10.808
MA0114.10.00952
MA0115.10.367
MA0116.13.43673e-5
MA0117.10.715
MA0119.10.784
MA0122.10.427
MA0124.10.989
MA0125.10.175
MA0131.10.114
MA0135.10.689
MA0136.19.303e-10
MA0137.20.336
MA0138.20.409
MA0139.10.138
MA0140.10.597
MA0141.10.0821
MA0142.10.356
MA0143.10.618
MA0144.10.275
MA0145.10.639
MA0146.10.295
MA0147.13.73699e-4
MA0148.10.253
MA0149.10.455
MA0150.10.845
MA0152.10.311
MA0153.10.483
MA0154.11.72663e-5
MA0155.10.737
MA0156.15.24559e-11
MA0157.10.0376
MA0159.10.246
MA0160.10.0416
MA0162.10.664
MA0163.12.82246e-11
MA0164.10.628
MA0258.10.0349
MA0259.10.0308



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12331

Novel motifP-value
10.00864
100.0283
1000.45
1010.197
1020.461
1030.175
1040.717
1050.655
1060.91
1070.715
1080.897
1090.0522
110.18
1100.148
1110.0743
1120.0766
1130.607
1140.423
1150.36
1160.452
1170.0202
1180.0942
1190.171
120.9
1200.47
1210.839
1220.546
1233.95907e-5
1240.0686
1250.326
1260.227
1270.257
1280.677
1290.544
130.0935
1300.687
1310.304
1320.809
1330.763
1340.679
1350.892
1360.122
1370.851
1380.813
1390.527
140.764
1400.292
1410.0688
1420.899
1430.396
1440.704
1450.0567
1460.64
1470.235
1480.0906
1490.507
150.0608
1500.868
1510.696
1520.127
1530.703
1540.897
1550.17
1560.848
1570.135
1580.845
1590.135
160.982
1600.203
1610.0302
1620.991
1630.77
1640.0839
1650.702
1660.243
1670.4
1680.426
1690.588
170.816
180.618
190.67
20.715
200.241
210.147
220.915
230.346
240.198
250.113
260.0598
270.533
280.364
290.0229
30.0447
300.118
310.879
320.582
330.337
340.627
350.153
360.0363
370.284
380.318
390.459
40.808
400.426
410.734
420.0796
430.417
440.149
450.413
460.249
470.0292
480.0553
490.314
50.683
500.802
510.641
520.281
530.362
540.819
550.445
560.746
570.226
580.071
590.22
60.901
600.975
610.109
620.0793
630.65
640.214
650.892
660.536
670.866
680.0876
690.682
70.12
700.466
710.019
720.375
730.899
740.652
750.00699
760.505
770.772
780.0238
790.922
80.61
800.166
810.437
820.681
830.579
840.209
850.482
860.32
870.0878
880.697
890.836
90.861
900.326
910.738
920.517
930.214
940.782
950.0125
960.729
970.142
980.498
990.269



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12331


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101035 (hematopoietic cell line sample)
0100773 (lymphoblastoid cell line sample)
0101522 (B-lymphocyte cell line sample)
0102062 (B-lymphoblastoid cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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