FF:12725-135G7: Difference between revisions

Latest revision as of 18:43, 4 June 2020

Name:	H9 Embryoid body cells, melanocytic induction
Species:	Human (Homo sapiens)
Library ID:	CNhs12825
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	unclassifiable
dev stage	NA
sex	female
age	NA
cell type	stem cell
cell line	H9
company	NA
collaboration	Susan Zabierowski (Wistar Institute)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005615

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12825		CAGE		DRX008584		DRR009456

Accession ID Hg19

Library id		BAM		CTSS
CNhs12825		DRZ000881		DRZ002266

Accession ID Hg38

Library id		BAM		CTSS
CNhs12825		DRZ012231		DRZ013616

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0175
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.479
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0428
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0.151
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.21
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0.0428
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.151
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.023
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0.0428
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0818
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.176
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0428
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.118
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0818
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.118
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.319
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00266
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0428
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0.0428
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.0428
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.0428
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.0818
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	1.743266e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.493
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.181
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0428
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0428
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0428
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.603
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0428
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0818
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12825

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.8575e-7
MA0003.1	MA0003.1	0.0812
MA0004.1	MA0004.1	0.903
MA0006.1	MA0006.1	0.811
MA0007.1	MA0007.1	0.647
MA0009.1	MA0009.1	0.354
MA0014.1	MA0014.1	0.694
MA0017.1	MA0017.1	0.257
MA0018.2	MA0018.2	0.138
MA0019.1	MA0019.1	0.158
MA0024.1	MA0024.1	9.75511e-4
MA0025.1	MA0025.1	0.328
MA0027.1	MA0027.1	0.328
MA0028.1	MA0028.1	0.547
MA0029.1	MA0029.1	0.826
MA0030.1	MA0030.1	0.97
MA0031.1	MA0031.1	0.467
MA0035.2	MA0035.2	0.651
MA0038.1	MA0038.1	3.08219e-4
MA0039.2	MA0039.2	0.0922
MA0040.1	MA0040.1	0.794
MA0041.1	MA0041.1	0.686
MA0042.1	MA0042.1	1
MA0043.1	MA0043.1	0.789
MA0046.1	MA0046.1	0.22
MA0047.2	MA0047.2	0.209
MA0048.1	MA0048.1	0.977
MA0050.1	MA0050.1	3.30188e-7
MA0051.1	MA0051.1	0.00172
MA0052.1	MA0052.1	0.335
MA0055.1	MA0055.1	0.551
MA0057.1	MA0057.1	0.447
MA0058.1	MA0058.1	0.865
MA0059.1	MA0059.1	0.263
MA0060.1	MA0060.1	1.21155e-13
MA0061.1	MA0061.1	0.0122
MA0062.2	MA0062.2	0.646
MA0065.2	MA0065.2	0.18
MA0066.1	MA0066.1	0.18
MA0067.1	MA0067.1	0.477
MA0068.1	MA0068.1	0.0101
MA0069.1	MA0069.1	0.397
MA0070.1	MA0070.1	0.00177
MA0071.1	MA0071.1	0.639
MA0072.1	MA0072.1	0.787
MA0073.1	MA0073.1	0.835
MA0074.1	MA0074.1	0.721
MA0076.1	MA0076.1	0.405
MA0077.1	MA0077.1	0.0939
MA0078.1	MA0078.1	0.688
MA0079.2	MA0079.2	0.0587
MA0080.2	MA0080.2	2.53429e-12
MA0081.1	MA0081.1	0.0458
MA0083.1	MA0083.1	0.58
MA0084.1	MA0084.1	0.424
MA0087.1	MA0087.1	0.574
MA0088.1	MA0088.1	0.185
MA0090.1	MA0090.1	0.534
MA0091.1	MA0091.1	0.0354
MA0092.1	MA0092.1	0.0738
MA0093.1	MA0093.1	0.97
MA0099.2	MA0099.2	4.39916e-8
MA0100.1	MA0100.1	0.804
MA0101.1	MA0101.1	0.0778
MA0102.2	MA0102.2	0.0197
MA0103.1	MA0103.1	0.601
MA0104.2	MA0104.2	0.408
MA0105.1	MA0105.1	2.18242e-5
MA0106.1	MA0106.1	0.578
MA0107.1	MA0107.1	0.0735
MA0108.2	MA0108.2	1.19249e-15
MA0111.1	MA0111.1	0.54
MA0112.2	MA0112.2	8.21824e-6
MA0113.1	MA0113.1	0.0847
MA0114.1	MA0114.1	0.387
MA0115.1	MA0115.1	0.644
MA0116.1	MA0116.1	2.62514e-4
MA0117.1	MA0117.1	0.814
MA0119.1	MA0119.1	5.23278e-4
MA0122.1	MA0122.1	0.861
MA0124.1	MA0124.1	0.987
MA0125.1	MA0125.1	0.00419
MA0131.1	MA0131.1	0.892
MA0135.1	MA0135.1	0.0085
MA0136.1	MA0136.1	9.80357e-10
MA0137.2	MA0137.2	0.606
MA0138.2	MA0138.2	0.553
MA0139.1	MA0139.1	0.606
MA0140.1	MA0140.1	0.471
MA0141.1	MA0141.1	0.159
MA0142.1	MA0142.1	4.59956e-8
MA0143.1	MA0143.1	0.00142
MA0144.1	MA0144.1	0.14
MA0145.1	MA0145.1	0.166
MA0146.1	MA0146.1	0.216
MA0147.1	MA0147.1	0.288
MA0148.1	MA0148.1	0.0433
MA0149.1	MA0149.1	0.00388
MA0150.1	MA0150.1	8.34063e-4
MA0152.1	MA0152.1	0.765
MA0153.1	MA0153.1	0.0845
MA0154.1	MA0154.1	0.00636
MA0155.1	MA0155.1	0.631
MA0156.1	MA0156.1	8.43524e-4
MA0157.1	MA0157.1	0.144
MA0159.1	MA0159.1	0.0654
MA0160.1	MA0160.1	0.141
MA0162.1	MA0162.1	0.43
MA0163.1	MA0163.1	7.7468e-10
MA0164.1	MA0164.1	0.845
MA0258.1	MA0258.1	0.0173
MA0259.1	MA0259.1	0.947

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12825

Novel motif	Logo	P-value
1	1	0.0375
10	10	0.0104
100	100	0.787
101	101	0.249
102	102	0.811
103	103	0.159
104	104	0.597
105	105	0.266
106	106	0.0486
107	107	0.323
108	108	0.638
109	109	0.08
11	11	0.0527
110	110	0.165
111	111	0.00313
112	112	0.215
113	113	0.442
114	114	0.00394
115	115	0.262
116	116	0.645
117	117	0.0902
118	118	0.453
119	119	0.15
12	12	0.992
120	120	0.8
121	121	0.993
122	122	0.97
123	123	0.0169
124	124	0.199
125	125	0.259
126	126	0.72
127	127	0.502
128	128	0.363
129	129	0.385
13	13	0.39
130	130	0.184
131	131	0.752
132	132	0.978
133	133	0.773
134	134	0.593
135	135	0.141
136	136	0.426
137	137	0.264
138	138	0.13
139	139	0.00618
14	14	0.564
140	140	0.0608
141	141	0.301
142	142	0.99
143	143	0.00376
144	144	0.678
145	145	0.293
146	146	0.497
147	147	0.877
148	148	0.0119
149	149	0.024
15	15	0.0381
150	150	0.523
151	151	0.116
152	152	0.502
153	153	0.256
154	154	0.231
155	155	0.612
156	156	0.32
157	157	0.693
158	158	0.596
159	159	0.572
16	16	0.29
160	160	0.186
161	161	0.467
162	162	0.587
163	163	0.693
164	164	0.103
165	165	0.31
166	166	0.954
167	167	0.00998
168	168	0.295
169	169	5.02787e-4
17	17	0.213
18	18	0.236
19	19	0.221
2	2	0.706
20	20	0.829
21	21	0.353
22	22	0.295
23	23	0.0965
24	24	0.596
25	25	0.402
26	26	0.0505
27	27	0.514
28	28	0.695
29	29	0.45
3	3	0.04
30	30	0.542
31	31	0.916
32	32	0.0697
33	33	0.459
34	34	0.858
35	35	0.23
36	36	0.0199
37	37	0.133
38	38	0.263
39	39	0.547
4	4	0.953
40	40	0.387
41	41	0.191
42	42	0.153
43	43	0.107
44	44	0.885
45	45	0.794
46	46	0.0483
47	47	0.2
48	48	0.209
49	49	0.0718
5	5	0.0689
50	50	0.961
51	51	0.615
52	52	0.625
53	53	0.173
54	54	0.464
55	55	0.0245
56	56	0.53
57	57	0.251
58	58	0.0901
59	59	0.217
6	6	0.581
60	60	0.166
61	61	0.621
62	62	0.0362
63	63	0.0738
64	64	0.186
65	65	0.133
66	66	0.477
67	67	0.306
68	68	0.397
69	69	0.824
7	7	0.335
70	70	0.00537
71	71	0.021
72	72	0.456
73	73	0.118
74	74	0.285
75	75	0.0876
76	76	0.254
77	77	0.272
78	78	0.354
79	79	0.322
8	8	0.0737
80	80	0.389
81	81	0.22
82	82	0.0515
83	83	0.953
84	84	0.834
85	85	0.0804
86	86	0.26
87	87	0.988
88	88	0.942
89	89	0.123
9	9	0.318
90	90	0.105
91	91	0.187
92	92	0.0399
93	93	0.205
94	94	0.0245
95	95	0.657
96	96	0.0223
97	97	0.548
98	98	0.14
99	99	0.746

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12825

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000532 human H9 Embryoid body cells 0 days after melanocytic induction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000034 (stem cell)
0000148 (melanocyte)
0002322 (embryonic stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000350 (experimentally modified sample)
0000334 (melanocytic induction sample)
0000380 (0 days sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000532 (human H9 Embryoid body cells 0 days after melanocytic induction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008476
+|DRA_sample_Accession=CAGE@SAMD00005615
-|accession_numbers=CAGE;DRX008584;DRR009456;DRZ000881;DRZ002266
+|accession_numbers=CAGE;DRX008584;DRR009456;DRZ000881;DRZ002266;DRZ012231;DRZ013616
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000034,CL:0000148,CL:0002322
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|donor= biol_rep2 (H9EB-2 d0)
 |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.31!410.71!DNMT3B;;chr10:135043702..135043729,+!p1@UTF1!2.23!169.49!UTF1;;chr3:181429704..181429722,+!p1@SOX2!2.01!102.11!SOX2;;chr8:145701192..145701241,-!p1@FOXH1!1.86!71.94!FOXH1;;chr2:5832508..5832524,+!p1@SOX11!1.78!58.88!SOX11;;chr6:31138439..31138475,-!p1@POU5F1!1.76!57.01!POU5F1;;chr8:73921136..73921151,+!p2@TERF1!1.71!74.74!TERF1;;chr4:188916918..188916942,+!p1@ZFP42!1.71!49.86!ZFP42;;chr13:100634031..100634045,+!p1@ZIC2!1.70!49.14!ZIC2;;chr3:181429741..181429767,+!p2@SOX2!1.63!41.57!SOX2;;chr2:223163706..223163730,-!p1@PAX3!1.61!39.81!PAX3;;chr16:3149278..3149305,-!p1@ZSCAN10!1.58!37.01!ZSCAN10;;chr2:16080659..16080685,+!p1@MYCN!1.57!36.39!MYCN;;chrX:136648279..136648295,+!p1@ZIC3!1.57!35.87!ZIC3;;chr22:38380543..38380569,-!p1@SOX10!1.55!34.83!SOX10;;chr1:6304233..6304243,+!p1@HES3!1.54!33.90!HES3;;chr20:50418972..50419029,-!p1@SALL4!1.48!29.44!SALL4;;chr1:2461692..2461710,-!p1@HES5!1.48!29.13!HES5;;chr10:135043493..135043510,+!p2@UTF1!1.45!27.06!UTF1;;chr11:63684602..63684664,-!p1@RCOR2!1.43!50.28!RCOR2;;chr17:7493405..7493419,-!p1@SOX15!1.42!25.19!SOX15;;chr8:70983476..70983493,-!p1@PRDM14!1.41!24.46!PRDM14;;chr2:25475120..25475176,-!p2@DNMT3A!1.39!31.20!DNMT3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.39!23.43!ZBED1;;chr6:15246200..15246214,+!p2@JARID2!1.38!62.61!JARID2;;chr14:57277178..57277203,-!p1@OTX2!1.38!22.91!OTX2;;chr6:137815524..137815537,-!p1@OLIG3!1.35!21.46!OLIG3;;chrX:136648643..136648711,+!p2@ZIC3!1.33!20.32!ZIC3;;chr9:114287433..114287513,+!p1@ZNF483!1.32!50.28!ZNF483;;chr13:100623375..100623425,-!p1@ZIC5!1.32!19.80!ZIC5;;chr19:46800289..46800327,+!p2@HIF3A!1.30!19.07!HIF3A;;chrX:139587228..139587234,-!p1@SOX3!1.29!18.56!SOX3;;chr5:2751762..2751784,-!p1@IRX2!1.28!18.14!IRX2;;chr18:56940611..56940660,-!p1@RAX!1.28!18.04!RAX;;chr2:25475094..25475112,-!p3@DNMT3A!1.26!17.21!DNMT3A;;chr20:55204351..55204377,+!p1@TFAP2C!1.25!21.15!TFAP2C;;chr19:20188776..20188826,+!p1@ZNF90!1.24!43.95!ZNF90;;chr6:50786591..50786614,+!p1@TFAP2B!1.24!16.48!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.23!18.56!HOXB2;;chr14:22005197..22005261,-!p3@SALL2!1.22!15.76!SALL2;;chr13:72441315..72441454,-!p1@DACH1!1.21!29.96!DACH1;;chr2:16081912..16081931,+!p2@MYCN!1.21!15.13!MYCN;;chr1:201979703..201979721,+!p2@ELF3!1.17!13.89!ELF3;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.70!TCF12;;chr3:185797712..185797746,-!p6@ETV5!1.16!13.48!ETV5;;chr10:70320074..70320106,+!p1@TET1!1.15!26.12!TET1;;chr14:57272369..57272391,-!p2@OTX2!1.15!13.27!OTX2;;chr4:299227..299272,-!p1@ZNF732!1.15!13.16!ZNF732;;chr20:50418128..50418147,-!p2@SALL4!1.14!12.75!SALL4;;chr12:106976774..106976788,+!p1@RFX4!1.14!12.75!RFX4;;chr1:151032922..151032951,+!p2@MLLT11!1.12!20.52!MLLT11;;chr2:63277948..63277974,+!p1@OTX1!1.12!12.23!OTX1;;chr20:50419055..50419066,-!p3@SALL4!1.12!12.13!SALL4;;chr1:201979743..201979762,+!p1@ELF3!1.11!11.82!ELF3;;chr1:63788229..63788250,+!p1@FOXD3!1.10!11.51!FOXD3;;chr9:127358120..127358170,-!p3@NR6A1!1.10!11.51!NR6A1;;chr2:5832493..5832507,+!p2@SOX11!1.09!11.20!SOX11;;chr3:170076314..170076334,+!p2@SKIL!1.08!14.31!SKIL;;chr8:145701166..145701187,-!p2@FOXH1!1.08!10.99!FOXH1;;chr6:19837592..19837621,+!p1@ID4!1.07!65.51!ID4;;chr3:147127177..147127194,+!p2@ZIC1!1.07!10.78!ZIC1;;chr5:92918919..92918942,+!p1@NR2F1!1.06!46.75!NR2F1;;chr2:88752207..88752218,-!p1@FOXI3!1.06!10.37!FOXI3;;chr14:21994337..21994442,-!p1@SALL2!1.05!28.82!SALL2;;chr12:54785074..54785122,-!p2@ZNF385A!1.05!15.86!ZNF385A;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!1.05!14.72!TGIF2;;chr1:209979467..209979494,-!p1@IRF6!1.05!11.61!IRF6;;chr12:7941989..7942014,+!p1@NANOG!1.05!10.26!NANOG;;chr1:160336851..160336868,+!p1@NHLH1!1.05!10.16!NHLH1;;chr5:170736243..170736279,+!p1@TLX3!1.04!9.95!TLX3;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.09!HMGA2;;chr6:126070769..126070801,+!p1@HEY2!1.03!11.30!HEY2;;chr5:2751785..2751808,-!p2@IRX2!1.03!9.64!IRX2;;chr17:46608354..46608385,-!p1@HOXB1!1.03!9.64!HOXB1;;chr17:41622765..41622821,-!p2@ETV4!1.02!14.51!ETV4;;chr9:127533519..127533573,-!p2@NR6A1!1.02!11.61!NR6A1;;chrX:136648297..136648319,+!p3@ZIC3!1.02!9.54!ZIC3;;chr13:100634004..100634025,+!p2@ZIC2!1.02!9.54!ZIC2;;chr8:70983443..70983460,-!p2@PRDM14!1.02!9.54!PRDM14;;chr5:174151612..174151633,+!p2@MSX2!1.02!9.43!MSX2;;chr19:48773337..48773339,+!p2@ZNF114!1.01!9.33!ZNF114;;chr2:171571827..171571853,+!p1@SP5!1.01!9.23!SP5;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.52!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.37!PBX1;;chr11:31832807..31832823,-!p4@PAX6!0.99!8.71!PAX6;;chr12:66218836..66218888,+!p1@HMGA2!0.98!82.00!HMGA2;;chr19:45579725..45579743,-!p1@ZNF296!0.98!39.60!ZNF296;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.98!19.07!SOHLH2;;chr18:56531584..56531646,+!p4@ZNF532!0.98!11.51!ZNF532;;chr7:42276787..42276815,-!p1@GLI3!0.96!22.18!GLI3;;chr13:100634130..100634143,+!p3@ZIC2!0.96!8.19!ZIC2;;chr3:147127142..147127168,+!p1@ZIC1!0.96!8.09!ZIC1;;chr6:10415276..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 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=FF:0100669
@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000334,FF:0000532,FF:12725-135G7
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep2%2520%2528H9EB-2%2520d0%2529.CNhs12825.12725-135G7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep2%2520%2528H9EB-2%2520d0%2529.CNhs12825.12725-135G7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep2%2520%2528H9EB-2%2520d0%2529.CNhs12825.12725-135G7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryoid%2520body%2520cells%252c%2520melanocytic%2520induction%252c%2520day00%252c%2520biol_rep2%2520%2528H9EB-2%2520d0%2529.CNhs12825.12725-135G7.hg38.nobarcode.ctss.bed.gz
 |id=FF:12725-135G7
 |is_a=EFO:0002091;;FF:0000532
 |is_obsolete=
 |library_id=CNhs12825
-|name=H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)
+|library_id_phase_based=2:CNhs12825
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12725
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12725
+|name=H9 Embryoid body cells, melanocytic induction
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
 |profile_hcage=CNhs12825,LSID972,release012,COMPLETED
-|profile_rnaseq=,,,
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@@ Line 64: / Line 78: @@
 |rna_sample_type=
 |rna_tube_id=135G7
-|rna_weight_ug=7.00
+|rna_weight_ug=7
 |sample_age=
 |sample_category=time courses
@@ Line 86: / Line 100: @@
 |sample_strain=
 |sample_tissue=unclassifiable
+|time= day00
+|timecourse=Embryoid_body_to_melanocyte
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12725-135G7;search_select_hide=table117:FF:12725-135G7
 }}

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FF:12725-135G7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:43, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0