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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008232
|DRA_sample_Accession=CAGE@SAMD00005433
|accession_numbers=CAGE;DRX008340;DRR009212;DRZ000637;DRZ002022
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005433
|accession_numbers=CAGE;DRX008340;DRR009212;DRZ000637;DRZ002022;DRZ011987;DRZ013372
|accession_numbers_RNASeq=sRNA-Seq;DRX037144;DRR041510;DRZ007152
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.70!496.11!SOX10;;chr19:3574330..3574393,+!p2@HMG20B!2.07!116.33!HMG20B;;chr2:223163706..223163730,-!p1@PAX3!1.98!94.09!PAX3;;chr6:391743..391759,+!p1@IRF4!1.90!78.69!IRF4;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.43!TFAP2A;;chr19:3574400..3574430,+!p6@HMG20B!1.73!53.03!HMG20B;;chr3:69985734..69985749,+!p2@MITF!1.72!51.32!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.56!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.66!44.48!TFAP2A;;chr19:3574157..3574180,+!p4@HMG20B!1.66!44.48!HMG20B;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.69!RUNX3;;chr8:72756637..72756664,-!p3@MSC!1.55!39.35!MSC;;chr2:5832508..5832524,+!p1@SOX11!1.55!34.21!SOX11;;chr2:239148671..239148686,-!p1@HES6!1.42!90.67!HES6;;chr17:59477233..59477263,+!p1@TBX2!1.38!70.14!TBX2;;chr14:29235961..29236008,+!p1@FOXG1!1.37!22.24!FOXG1;;chr20:62680984..62680999,-!p1@SOX18!1.34!27.37!SOX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.33!20.53!HOXC5;;chr17:59477275..59477286,+!p3@TBX2!1.28!23.95!TBX2;;chr11:47279504..47279563,+!p1@NR1H3!1.23!35.93!NR1H3;;chr20:55204351..55204377,+!p1@TFAP2C!1.20!18.82!TFAP2C;;chr17:46688334..46688385,-!p1@HOXB7!1.18!20.53!HOXB7;;chr1:209979467..209979494,-!p1@IRF6!1.17!15.40!IRF6;;chr1:25256439..25256476,-!p3@RUNX3!1.17!13.69!RUNX3;;chr17:46806067..46806097,-!p1@HOXB13!1.17!13.69!HOXB13;;chr17:7493405..7493419,-!p1@SOX15!1.17!13.69!SOX15;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.69!IRX2;;chr5:321810..321877,+!p1@AHRR!1.16!42.77!AHRR;;chr6:10412392..10412409,-!p4@TFAP2A!1.11!13.69!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.11!11.98!IRX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.11!11.98!TFAP2A;;chr7:31380292..31380351,-!p1@NEUROD6!1.11!11.98!NEUROD6;;chr17:46806035..46806059,-!p2@HOXB13!1.11!11.98!HOXB13;;chr11:34642612..34642646,+!p1@EHF!1.11!11.98!EHF;;chr12:54447637..54447659,+!p4@HOXC4!1.11!11.98!HOXC4;;chr9:102584262..102584276,+!p1@NR4A3!1.07!23.95!NR4A3;;chr2:239756671..239756732,+!p1@TWIST2!1.06!34.21!TWIST2;;chr15:42749722..42749739,-!p2@ZFP106!1.06!18.82!ZFP106;;chr8:72756267..72756296,-!p4@MSC!1.06!15.40!MSC;;chr6:10415263..10415274,-!p8@TFAP2A!1.05!10.26!TFAP2A;;chr8:72756380..72756427,-!p8@MSC!1.05!10.26!MSC;;chr2:119605214..119605230,-!p1@EN1!1.05!10.26!EN1;;chr1:63788229..63788250,+!p1@FOXD3!1.05!10.26!FOXD3;;chr1:6479968..6479986,-!p1@HES2!1.05!10.26!HES2;;chr16:67198683..67198698,+!p2@HSF4!1.05!10.26!HSF4;;chr8:72756063..72756125,-!p1@MSC!1.04!20.53!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.03!27.37!TWIST1;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.64!FOSL1;;chr8:22550982..22550999,-!p1@EGR3!1.00!25.66!EGR3;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.55!HOXC10;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.55!HOXD8;;chr17:8027418..8027432,-!p1@HES7!0.98!8.55!HES7;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.26!NFATC2;;chr19:33793430..33793447,-!p1@CEBPA!0.93!32.50!CEBPA;;chr12:54785054..54785072,-!p4@ZNF385A!0.93!8.55!ZNF385A;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.55!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!0.92!10.26!FOXF2;;chr6:34204973..34204990,+!p4@HMGA1!0.90!97.51!HMGA1;;chr1:204042233..204042249,+!p1@SOX13!0.90!46.19!SOX13;;chr19:38720294..38720348,-!p1@DPF1!0.89!8.55!DPF1;;chr5:172662197..172662216,-!p1@NKX2-5!0.89!6.84!NKX2-5;;chr8:55370487..55370503,+!p1@SOX17!0.89!6.84!SOX17;;chr8:72756522..72756533,-!p13@MSC!0.89!6.84!MSC;;chr16:29819122..29819141,+!p34@MAZ!0.89!6.84!MAZ;;chr16:67198633..67198671,+!p1@HSF4!0.89!6.84!HSF4;;chr17:37764128..37764258,-!p1@NEUROD2!0.89!6.84!NEUROD2;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.84!HOXB6;;chr2:5832493..5832507,+!p2@SOX11!0.89!6.84!SOX11;;chr3:189507432..189507459,+!p1@TP63!0.89!6.84!TP63;;chr12:54393880..54393962,+!p1@HOXC9!0.89!6.84!HOXC9;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr17:41623692..41623715,-!p1@ETV4!0.87!29.08!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.87!6.84!GLIS1;;chr19:3572925..3573014,+!p1@HMG20B!0.85!188.18!HMG20B;;chr11:65667846..65667868,-!p1@FOSL1!0.85!171.07!FOSL1;;chr2:74730430..74730451,-!p1@LBX2!0.85!10.26!LBX2;;chr8:37553292..37553317,+!p1@ZNF703!0.83!145.41!ZNF703;;chr20:32274179..32274213,-!p1@E2F1!0.83!41.06!E2F1;;chr17:59477197..59477212,+!p2@TBX2!0.83!10.26!TBX2;;chr2:71127699..71127744,+!p1@VAX2!0.82!11.98!VAX2;;chr17:7492684..7492778,-!p2@SOX15!0.81!11.98!SOX15;;chr9:102584159..102584174,+!p2@NR4A3!0.81!10.26!NR4A3;;chr19:35759824..35759891,+!p1@USF2!0.80!177.92!USF2;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.16!FOXM1;;chr8:128748308..128748324,+!p2@MYC!0.79!157.39!MYC;;chr19:42788611..42788634,+!p2@CIC!0.79!8.55!CIC;;chr11:62369806..62369837,-!p8@MTA2!0.79!6.84!MTA2;;chr8:72756213..72756243,-!p5@MSC!0.79!6.84!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.79!5.13!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!0.79!5.13!HOXA9;;chr19:46801639..46801699,+!p1@HIF3A!0.79!5.13!HIF3A;;chr19:57946675..57946680,+!p2@ZNF749!0.79!5.13!ZNF749;;chr1:203055129..203055147,-!p1@MYOG!0.79!5.13!MYOG;;chr2:145271342..145271377,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002567
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg38.nobarcode.ctss.bed.gz
|id=FF:11423-118G1
|id=FF:11423-118G1
|is_a=EFO:0002091;;FF:0000090
|is_a=EFO:0002091;;FF:0000090
|is_obsolete=
|is_obsolete=
|library_id=CNhs12033
|library_id=CNhs12033
|library_id_phase_based=1:CNhs12033
|library_id_phase_based=2:CNhs12033
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11423
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTTTCG.11423
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11423
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTTTCG.11423
|name=Melanocyte - light, donor3
|name=Melanocyte - light, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12033,LSID837,release011,COMPLETED
|profile_hcage=CNhs12033,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=ZNF423:2.27751302525;ESRRA:2.18095642496;NFE2L1:1.74816082231;ZNF238:1.55956520847;HES1:1.52861958678;RXR{A,B,G}:1.42296085732;NR3C1:1.39011788766;NR5A1,2:1.34554612342;TBP:1.3347775567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32992815527;GZF1:1.27697218753;TFCP2:1.23802406677;bHLH_family:1.21529837866;PAX6:1.19075619165;HOX{A6,A7,B6,B7}:1.14380345684;GTF2A1,2:1.12146822092;IKZF1:1.08841803598;POU6F1:1.05019286461;HMX1:1.03133846836;TLX1..3_NFIC{dimer}:1.02639283671;POU2F1..3:1.00936128365;SOX{8,9,10}:0.920423279001;AR:0.890274529377;GLI1..3:0.889017641919;XCPE1{core}:0.884044106139;TP53:0.813077176082;SP1:0.770955766657;LHX3,4:0.75734783969;REST:0.753150146038;EBF1:0.742247151474;GCM1,2:0.733268235752;ZNF148:0.714703668771;GFI1:0.6959512459;ESR1:0.691067643388;RXRA_VDR{dimer}:0.631662720607;PRRX1,2:0.624827811962;HOX{A4,D4}:0.61875391683;POU3F1..4:0.60550689497;TFAP2{A,C}:0.577256180269;SREBF1,2:0.576701724515;MYOD1:0.533833463208;GTF2I:0.530034235036;FOXL1:0.52848505539;TFDP1:0.522299212843;NKX2-3_NKX2-5:0.508253127631;LMO2:0.508091313541;SPZ1:0.496513794104;SMAD1..7,9:0.457581516254;TFAP2B:0.418186747797;GFI1B:0.41787525266;EN1,2:0.398819234985;NANOG:0.387611665239;HIC1:0.361890885249;HNF4A_NR2F1,2:0.326000155028;NFY{A,B,C}:0.313121513303;SOX17:0.309529993147;MED-1{core}:0.309427499271;ZBTB6:0.287017223723;STAT2,4,6:0.249534539008;ONECUT1,2:0.217465682461;MAZ:0.214478790301;NFE2:0.209413848163;UFEwm:0.204791833804;PAX5:0.189724203228;FOSL2:0.181610018246;ATF6:0.176360142923;PAX2:0.165330870249;TOPORS:0.140594184751;EP300:0.140414347731;TFAP4:0.133322445691;POU1F1:0.129771222053;TAL1_TCF{3,4,12}:0.127840874892;MEF2{A,B,C,D}:0.126773066679;MTF1:0.121385575583;EGR1..3:0.121324921634;XBP1:0.118331386276;KLF4:0.113563852318;PAX8:0.110166883175;TEAD1:0.109018514787;YY1:0.105698289074;SRF:0.0908531125175;ZIC1..3:0.0891589360404;FOXQ1:0.0636431462692;FOS_FOS{B,L1}_JUN{B,D}:0.0522948587409;MZF1:0.0483140111324;AHR_ARNT_ARNT2:0.0481026014352;HOX{A5,B5}:0.0367561025651;CUX2:0.00838262792803;HNF1A:-0.0145568655062;ATF2:-0.0268273799609;E2F1..5:-0.0377117436773;DBP:-0.0417081887878;SOX5:-0.0420722878832;PPARG:-0.0625934705664;GATA6:-0.0660167078838;BACH2:-0.0694873051982;ARID5B:-0.0776351783027;SOX2:-0.0802122646275;NFE2L2:-0.0843058940102;NFIL3:-0.0909616657286;RORA:-0.108832753098;ZNF384:-0.137619603517;PAX1,9:-0.149604428823;NHLH1,2:-0.151923900462;MYBL2:-0.155564643935;CDC5L:-0.171931513391;LEF1_TCF7_TCF7L1,2:-0.175744608869;PBX1:-0.190643581318;RUNX1..3:-0.194446525201;HBP1_HMGB_SSRP1_UBTF:-0.206953782441;NANOG{mouse}:-0.21170783603;MAFB:-0.221214554069;JUN:-0.230112948474;BREu{core}:-0.241353690524;PATZ1:-0.246009071332;ETS1,2:-0.278484433364;MYFfamily:-0.288076013717;FOXP3:-0.294309685875;STAT5{A,B}:-0.303835146971;ZEB1:-0.310704036383;NFKB1_REL_RELA:-0.340263482063;ZNF143:-0.340405254004;RREB1:-0.34536637711;SNAI1..3:-0.354842600044;SPIB:-0.358396341862;OCT4_SOX2{dimer}:-0.359920778271;ADNP_IRX_SIX_ZHX:-0.360188590245;MTE{core}:-0.360894696119;CEBPA,B_DDIT3:-0.382507031163;RFX1:-0.400588366206;FOX{F1,F2,J1}:-0.404215519638;HLF:-0.414182274455;HAND1,2:-0.41658451735;PAX3,7:-0.430893789614;HOXA9_MEIS1:-0.439604732417;HIF1A:-0.440692015928;NFIX:-0.449989148842;PAX4:-0.463602685595;SPI1:-0.46779604611;FOX{D1,D2}:-0.474596547692;FOXM1:-0.506265024814;ZFP161:-0.512685318198;ALX4:-0.543695251399;ATF4:-0.594906726255;TLX2:-0.607439499167;TGIF1:-0.611268642817;NR6A1:-0.618104192892;TBX4,5:-0.64364697628;NFATC1..3:-0.668137910307;PRDM1:-0.691207565634;VSX1,2:-0.692144616307;ATF5_CREB3:-0.706333124861;POU5F1:-0.71135631222;NKX3-2:-0.717626218808;MYB:-0.726521263643;FOXO1,3,4:-0.784993852522;NKX6-1,2:-0.796135910597;RFX2..5_RFXANK_RFXAP:-0.812724681233;HSF1,2:-0.854813118965;AIRE:-0.855983150223;CRX:-0.859497147097;IRF7:-0.885484591299;FOXA2:-0.888528861255;FOX{I1,J2}:-0.933261975425;NKX2-1,4:-0.93373225529;IRF1,2:-0.951746091876;CREB1:-0.954492998693;ELF1,2,4:-0.963846560396;RBPJ:-0.991810054549;NRF1:-1.01920986791;DMAP1_NCOR{1,2}_SMARC:-1.03498794012;T:-1.03801721468;PITX1..3:-1.05939853337;GATA4:-1.10002776295;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.13892765399;TEF:-1.18602770232;FOXP1:-1.22807738642;ELK1,4_GABP{A,B1}:-1.28139991143;IKZF2:-1.29983802621;EVI1:-1.30861990315;ALX1:-1.32144015519;PDX1:-1.32908335304;NR1H4:-1.36825632158;ZBTB16:-1.41201715251;STAT1,3:-1.41633088676;BPTF:-1.43986367697;FOXD3:-1.49436342195;HMGA1,2:-1.52990916534;NKX3-1:-1.56938771594;CDX1,2,4:-1.59020080106;FOXN1:-2.0784870279;NKX2-2,8:-2.24053604494
|top_motifs=ZNF423:2.27751302525;ESRRA:2.18095642496;NFE2L1:1.74816082231;ZNF238:1.55956520847;HES1:1.52861958678;RXR{A,B,G}:1.42296085732;NR3C1:1.39011788766;NR5A1,2:1.34554612342;TBP:1.3347775567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32992815527;GZF1:1.27697218753;TFCP2:1.23802406677;bHLH_family:1.21529837866;PAX6:1.19075619165;HOX{A6,A7,B6,B7}:1.14380345684;GTF2A1,2:1.12146822092;IKZF1:1.08841803598;POU6F1:1.05019286461;HMX1:1.03133846836;TLX1..3_NFIC{dimer}:1.02639283671;POU2F1..3:1.00936128365;SOX{8,9,10}:0.920423279001;AR:0.890274529377;GLI1..3:0.889017641919;XCPE1{core}:0.884044106139;TP53:0.813077176082;SP1:0.770955766657;LHX3,4:0.75734783969;REST:0.753150146038;EBF1:0.742247151474;GCM1,2:0.733268235752;ZNF148:0.714703668771;GFI1:0.6959512459;ESR1:0.691067643388;RXRA_VDR{dimer}:0.631662720607;PRRX1,2:0.624827811962;HOX{A4,D4}:0.61875391683;POU3F1..4:0.60550689497;TFAP2{A,C}:0.577256180269;SREBF1,2:0.576701724515;MYOD1:0.533833463208;GTF2I:0.530034235036;FOXL1:0.52848505539;TFDP1:0.522299212843;NKX2-3_NKX2-5:0.508253127631;LMO2:0.508091313541;SPZ1:0.496513794104;SMAD1..7,9:0.457581516254;TFAP2B:0.418186747797;GFI1B:0.41787525266;EN1,2:0.398819234985;NANOG:0.387611665239;HIC1:0.361890885249;HNF4A_NR2F1,2:0.326000155028;NFY{A,B,C}:0.313121513303;SOX17:0.309529993147;MED-1{core}:0.309427499271;ZBTB6:0.287017223723;STAT2,4,6:0.249534539008;ONECUT1,2:0.217465682461;MAZ:0.214478790301;NFE2:0.209413848163;UFEwm:0.204791833804;PAX5:0.189724203228;FOSL2:0.181610018246;ATF6:0.176360142923;PAX2:0.165330870249;TOPORS:0.140594184751;EP300:0.140414347731;TFAP4:0.133322445691;POU1F1:0.129771222053;TAL1_TCF{3,4,12}:0.127840874892;MEF2{A,B,C,D}:0.126773066679;MTF1:0.121385575583;EGR1..3:0.121324921634;XBP1:0.118331386276;KLF4:0.113563852318;PAX8:0.110166883175;TEAD1:0.109018514787;YY1:0.105698289074;SRF:0.0908531125175;ZIC1..3:0.0891589360404;FOXQ1:0.0636431462692;FOS_FOS{B,L1}_JUN{B,D}:0.0522948587409;MZF1:0.0483140111324;AHR_ARNT_ARNT2:0.0481026014352;HOX{A5,B5}:0.0367561025651;CUX2:0.00838262792803;HNF1A:-0.0145568655062;ATF2:-0.0268273799609;E2F1..5:-0.0377117436773;DBP:-0.0417081887878;SOX5:-0.0420722878832;PPARG:-0.0625934705664;GATA6:-0.0660167078838;BACH2:-0.0694873051982;ARID5B:-0.0776351783027;SOX2:-0.0802122646275;NFE2L2:-0.0843058940102;NFIL3:-0.0909616657286;RORA:-0.108832753098;ZNF384:-0.137619603517;PAX1,9:-0.149604428823;NHLH1,2:-0.151923900462;MYBL2:-0.155564643935;CDC5L:-0.171931513391;LEF1_TCF7_TCF7L1,2:-0.175744608869;PBX1:-0.190643581318;RUNX1..3:-0.194446525201;HBP1_HMGB_SSRP1_UBTF:-0.206953782441;NANOG{mouse}:-0.21170783603;MAFB:-0.221214554069;JUN:-0.230112948474;BREu{core}:-0.241353690524;PATZ1:-0.246009071332;ETS1,2:-0.278484433364;MYFfamily:-0.288076013717;FOXP3:-0.294309685875;STAT5{A,B}:-0.303835146971;ZEB1:-0.310704036383;NFKB1_REL_RELA:-0.340263482063;ZNF143:-0.340405254004;RREB1:-0.34536637711;SNAI1..3:-0.354842600044;SPIB:-0.358396341862;OCT4_SOX2{dimer}:-0.359920778271;ADNP_IRX_SIX_ZHX:-0.360188590245;MTE{core}:-0.360894696119;CEBPA,B_DDIT3:-0.382507031163;RFX1:-0.400588366206;FOX{F1,F2,J1}:-0.404215519638;HLF:-0.414182274455;HAND1,2:-0.41658451735;PAX3,7:-0.430893789614;HOXA9_MEIS1:-0.439604732417;HIF1A:-0.440692015928;NFIX:-0.449989148842;PAX4:-0.463602685595;SPI1:-0.46779604611;FOX{D1,D2}:-0.474596547692;FOXM1:-0.506265024814;ZFP161:-0.512685318198;ALX4:-0.543695251399;ATF4:-0.594906726255;TLX2:-0.607439499167;TGIF1:-0.611268642817;NR6A1:-0.618104192892;TBX4,5:-0.64364697628;NFATC1..3:-0.668137910307;PRDM1:-0.691207565634;VSX1,2:-0.692144616307;ATF5_CREB3:-0.706333124861;POU5F1:-0.71135631222;NKX3-2:-0.717626218808;MYB:-0.726521263643;FOXO1,3,4:-0.784993852522;NKX6-1,2:-0.796135910597;RFX2..5_RFXANK_RFXAP:-0.812724681233;HSF1,2:-0.854813118965;AIRE:-0.855983150223;CRX:-0.859497147097;IRF7:-0.885484591299;FOXA2:-0.888528861255;FOX{I1,J2}:-0.933261975425;NKX2-1,4:-0.93373225529;IRF1,2:-0.951746091876;CREB1:-0.954492998693;ELF1,2,4:-0.963846560396;RBPJ:-0.991810054549;NRF1:-1.01920986791;DMAP1_NCOR{1,2}_SMARC:-1.03498794012;T:-1.03801721468;PITX1..3:-1.05939853337;GATA4:-1.10002776295;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.13892765399;TEF:-1.18602770232;FOXP1:-1.22807738642;ELK1,4_GABP{A,B1}:-1.28139991143;IKZF2:-1.29983802621;EVI1:-1.30861990315;ALX1:-1.32144015519;PDX1:-1.32908335304;NR1H4:-1.36825632158;ZBTB16:-1.41201715251;STAT1,3:-1.41633088676;BPTF:-1.43986367697;FOXD3:-1.49436342195;HMGA1,2:-1.52990916534;NKX3-1:-1.56938771594;CDX1,2,4:-1.59020080106;FOXN1:-2.0784870279;NKX2-2,8:-2.24053604494
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11423-118G1;search_select_hide=table117:FF:11423-118G1
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Melanocyte - light, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12033
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageinfant
sexmale
ageneonatal
cell typemelanocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1259
catalog numberCA104-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005433
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12033 CAGE DRX008340 DRR009212
Accession ID Hg19

Library idBAMCTSS
CNhs12033 DRZ000637 DRZ002022
Accession ID Hg38

Library idBAMCTSS
CNhs12033 DRZ011987 DRZ013372
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005433
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GTTTCG sRNA-Seq DRX037144 DRR041510
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GTTTCG DRZ007152


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.278
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.239
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.932
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.433
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte1.618
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.255
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.787
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0414
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.368
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.433
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.788
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12033

Jaspar motifP-value
MA0002.20.444
MA0003.10.243
MA0004.10.0105
MA0006.10.506
MA0007.10.028
MA0009.10.669
MA0014.10.937
MA0017.10.422
MA0018.20.0589
MA0019.10.287
MA0024.10.529
MA0025.10.096
MA0027.10.86
MA0028.17.15472e-5
MA0029.10.98
MA0030.10.611
MA0031.10.311
MA0035.20.66
MA0038.10.182
MA0039.20.153
MA0040.10.577
MA0041.10.337
MA0042.10.78
MA0043.16.01153e-4
MA0046.10.773
MA0047.20.935
MA0048.10.985
MA0050.13.67081e-5
MA0051.10.00169
MA0052.10.00495
MA0055.10.386
MA0057.10.64
MA0058.16.01876e-4
MA0059.10.0038
MA0060.11.72549e-4
MA0061.10.265
MA0062.21.03216e-8
MA0065.20.0197
MA0066.10.623
MA0067.10.367
MA0068.10.34
MA0069.10.818
MA0070.10.0111
MA0071.10.479
MA0072.10.428
MA0073.10.783
MA0074.10.126
MA0076.17.16165e-7
MA0077.10.176
MA0078.10.463
MA0079.20.372
MA0080.25.67402e-4
MA0081.10.0221
MA0083.10.0209
MA0084.10.769
MA0087.10.616
MA0088.10.839
MA0090.10.278
MA0091.10.00326
MA0092.10.8
MA0093.10.00365
MA0099.20.567
MA0100.10.158
MA0101.10.134
MA0102.20.166
MA0103.10.936
MA0104.20.272
MA0105.10.392
MA0106.10.159
MA0107.10.204
MA0108.21.09905e-14
MA0111.10.722
MA0112.20.026
MA0113.10.198
MA0114.10.222
MA0115.10.561
MA0116.10.736
MA0117.10.128
MA0119.10.0176
MA0122.10.326
MA0124.10.404
MA0125.10.225
MA0131.10.169
MA0135.10.00853
MA0136.13.48973e-7
MA0137.20.00465
MA0138.20.18
MA0139.10.938
MA0140.10.433
MA0141.10.0641
MA0142.10.168
MA0143.10.91
MA0144.10.249
MA0145.10.31
MA0146.10.173
MA0147.10.167
MA0148.10.37
MA0149.10.943
MA0150.10.72
MA0152.10.824
MA0153.10.695
MA0154.10.666
MA0155.10.0274
MA0156.12.56475e-5
MA0157.10.343
MA0159.10.65
MA0160.10.394
MA0162.10.197
MA0163.10.904
MA0164.10.882
MA0258.10.0107
MA0259.10.455



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12033

Novel motifP-value
10.817
100.11
1000.45
1010.172
1020.815
1030.447
1040.419
1050.774
1060.06
1070.0518
1080.362
1090.776
110.359
1100.248
1110.538
1120.625
1130.472
1140.49
1150.274
1160.219
1170.602
1180.885
1190.7
120.305
1200.694
1210.637
1220.748
1230.422
1240.901
1250.921
1260.965
1270.415
1280.0335
1290.157
130.97
1300.698
1310.111
1320.423
1330.227
1340.602
1350.874
1360.979
1370.749
1380.25
1390.663
140.62
1400.807
1410.314
1420.529
1430.56
1440.914
1450.357
1460.0133
1470.136
1480.155
1490.414
150.763
1500.182
1510.695
1520.0935
1530.846
1540.051
1550.839
1560.943
1570.162
1580.0634
1590.402
160.299
1600.244
1610.903
1620.0434
1630.357
1640.367
1650.467
1660.486
1670.142
1680.706
1690.0988
170.177
180.0855
190.111
20.271
200.591
210.831
220.14
230.413
240.395
250.317
260.156
270.231
280.13
290.729
30.773
300.435
310.0915
320.124
330.816
340.269
350.71
360.323
370.573
380.707
390.454
40.524
400.159
410.817
420.293
430.45
440.777
450.333
460.373
470.684
480.946
490.51
50.769
500.541
510.439
520.266
530.366
540.675
550.078
560.932
570.181
580.252
590.0532
60.918
600.359
610.982
620.311
630.245
640.392
650.0321
660.287
670.616
680.819
690.383
70.667
700.356
710.722
720.617
730.0518
740.541
750.856
760.196
770.0602
780.174
790.72
80.0554
800.555
810.694
820.957
830.962
840.61
850.137
860.992
870.043
880.328
890.159
90.392
900.0944
910.808
920.462
930.509
940.994
950.585
960.713
970.424
980.41
990.0179



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12033


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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