FF:11387-118C1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005757 | ||
|accession_numbers=CAGE;DRX008372;DRR009244;DRZ000669;DRZ002054 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005757 | ||
|accession_numbers=CAGE;DRX008372;DRR009244;DRZ000669;DRZ002054;DRZ012019;DRZ013404 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037169;DRR041535;DRZ007177 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000623 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.49!555.21!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.29!261.69!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.13!135.15!TBX21;;chr2:145271342..145271377,-!p5@ZEB2!2.00!98.82!ZEB2;;chr20:50159198..50159299,-!p1@NFATC2!1.98!136.69!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.93!1456.31!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!1.87!358.72!NR4A2;;chr9:117150254..117150271,-!p1@AKNA!1.84!180.96!AKNA;;chr7:50343634..50343717,+!p2@IKZF1!1.82!65.71!IKZF1;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.48!PLEK;;chr2:192015677..192015691,-!p3@STAT4!1.75!55.19!STAT4;;chr6:106546808..106546833,+!p3@PRDM1!1.74!67.77!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!1.74!53.90!IRF8;;chr15:60884706..60884743,-!p1@RORA!1.73!257.07!RORA;;chr19:54041669..54041697,+!p2@ZNF331!1.73!52.11!ZNF331;;chr14:75745523..75745537,+!p1@FOS!1.72!5814.07!FOS;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.70!ZNF331;;chr17:38020392..38020477,-!p1@IKZF3!1.67!46.20!IKZF3;;chr10:8096631..8096660,+!p1@GATA3!1.65!52.88!GATA3;;chr1:25291475..25291511,-!p2@RUNX3!1.65!44.02!RUNX3;;chr20:56195474..56195506,-!p1@ZBP1!1.65!43.25!ZBP1;;chr1:59249688..59249703,-!p3@JUN!1.64!245.91!JUN;;chr8:123793988..123794016,+!p1@ZHX2!1.64!73.16!ZHX2;;chr3:63953435..63953499,+!p1@ATXN7!1.64!42.61!ATXN7;;chr14:64971288..64971316,-!p2@ZBTB25!1.61!117.56!ZBTB25;;chr3:39195075..39195088,-!p1@CSRNP1!1.58!224.34!CSRNP1;;chr9:3525727..3525828,-!p2@RFX3!1.57!90.61!RFX3;;chr12:72056800..72056834,+!p1@THAP2!1.57!48.77!THAP2;;chr8:81397820..81397836,+!p2@ZBTB10!1.57!45.31!ZBTB10;;chr9:102584262..102584276,+!p1@NR4A3!1.56!76.24!NR4A3;;chr1:59249707..59249727,-!p1@JUN!1.55!1359.79!JUN;;chrX:106960285..106960299,-!p1@TSC22D3!1.55!874.40!TSC22D3;;chr5:133450365..133450444,+!p1@TCF7!1.55!152.86!TCF7;;chr10:8096772..8096787,+!p2@GATA3!1.55!40.81!GATA3;;chr5:133451294..133451310,+!p2@TCF7!1.55!34.65!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.53!33.24!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.52!32.34!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.50!41.07!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.50!34.78!HOPX;;chr10:35484053..35484076,+!p1@CREM!1.49!72.26!CREM;;chr8:81397876..81397898,+!p5@ZBTB10!1.49!35.17!ZBTB10;;chr10:3824332..3824425,-!p4@KLF6!1.48!46.08!KLF6;;chr19:16435625..16435682,+!p1@KLF2!1.47!874.27!KLF2;;chr14:75746722..75746777,+!p2@FOS!1.47!36.32!FOS;;chr1:151030536..151030549,+!p8@MLLT11!1.47!28.75!MLLT11;;chr2:145277640..145277771,-!p1@ZEB2!1.44!339.21!ZEB2;;chr6:391743..391759,+!p1@IRF4!1.43!25.80!IRF4;;chr8:67525443..67525459,-!p2@MYBL1!1.42!37.60!MYBL1;;chr8:81397846..81397860,+!p3@ZBTB10!1.42!31.44!ZBTB10;;chr14:35873947..35873965,-!p1@NFKBIA!1.41!1511.37!NFKBIA;;chr5:131826457..131826514,-!p1@IRF1!1.41!928.05!IRF1;;chr3:5020939..5020952,+!p2@BHLHE40!1.41!75.98!BHLHE40;;chr17:37934365..37934387,-!p2@IKZF3!1.41!24.77!IKZF3;;chr12:72056773..72056796,+!p3@THAP2!1.40!31.06!THAP2;;chr13:74707894..74707947,-!p6@KLF12!1.39!26.44!KLF12;;chr4:57522598..57522664,-!p3@HOPX!1.39!23.74!HOPX;;chr4:103422499..103422632,+!p1@NFKB1!1.38!459.21!NFKB1;;chr19:19729477..19729542,-!p1@PBX4!1.37!46.72!PBX4;;chr2:61108878..61108891,+!p5@REL!1.37!22.33!REL;;chrX:106960180..106960197,-!p2@TSC22D3!1.36!82.14!TSC22D3;;chr7:104654690..104654704,+!p2@MLL5!1.36!42.87!MLL5;;chr2:231090471..231090504,+!p2@SP140!1.35!21.18!SP140;;chrX:106960221..106960236,-!p3@TSC22D3!1.34!56.98!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.74!BACH2;;chr6:106546834..106546850,+!p4@PRDM1!1.34!21.05!PRDM1;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.66!IKZF1;;chr10:35416142..35416169,+!p3@CREM!1.32!52.36!CREM;;chr11:47400078..47400106,-!p1@SPI1!1.32!20.02!SPI1;;chr4:57522674..57522699,-!p5@HOPX!1.32!19.89!HOPX;;chr17:38497662..38497713,+!p4@RARA!1.31!22.59!RARA;;chr3:23986824..23986848,+!p2@NR1D2!1.30!103.70!NR1D2;;chr19:45972701..45972774,+!p2@FOSB!1.30!25.80!FOSB;;chr10:104154415..104154434,+!p5@NFKB2!1.30!19.12!NFKB2;;chr2:61108695..61108753,+!p1@REL!1.29!125.13!REL;;chr7:50344289..50344323,+!p1@IKZF1!1.29!18.61!IKZF1;;chr21:36421347..36421380,-!p8@RUNX1!1.29!18.61!RUNX1;;chr7:104654718..104654741,+!p3@MLL5!1.28!26.05!MLL5;;chr4:109087445..109087463,-!p1@LEF1!1.28!17.84!LEF1;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.11!NR4A3;;chr8:123793252..123793266,+!p10@ZHX2!1.27!17.71!ZHX2;;chr14:35874077..35874091,-!p8@NFKBIA!1.27!17.45!NFKBIA;;chr1:10754477..10754517,-!p1@CASZ1!1.26!28.24!CASZ1;;chr1:25256175..25256228,-!p5@RUNX3!1.26!17.33!RUNX3;;chr10:3827389..3827408,-!p1@KLF6!1.25!1258.28!KLF6;;chr17:7388010..7388017,-!p5@ZBTB4!1.25!28.11!ZBTB4;;chr11:113930425..113930471,+!p1@ZBTB16!1.25!23.87!ZBTB16;;chr2:208394817..208394834,+!p3@CREB1!1.24!65.45!CREB1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.28!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.24!16.56!PLEK;;chr6:106546731..106546755,+!p5@PRDM1!1.23!15.91!PRDM1;;chr19:47616992..47617011,-!p4@ZC3H4!1.22!33.50!ZC3H4;;chr19:12902289..12902307,+!p1@JUNB!1.21!3387.36!JUNB;;chr9:102584159..102584174,+!p2@NR4A3!1.21!27.59!NR4A3;;chr18:3449330..3449344,+!p10@TGIF1!1.21!20.28!TGIF1;;chr6:106546786..106546802,+!p6@PRDM1!1.21!15.27!PRDM1;;chr7:50344251..50344288,+!p3@IKZF1!1.21!15.27!IKZF1;;chr3:71542615..71542644,-!p12@FOXP1!1.21!15.14!FOXP1;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.61!CSRNP1;;chr2:61108808..61108821,+!p3@REL!1.20!18.61!REL;;chr3:27763807..27763822,-!p1@EOMES!1.20!15.02!EOMES;;chr17:38020516..38020544,-!p5@IKZF3!1.20!15.02!IKZF3;;chr2:97202480..97202499,+!p1@ARID5A!1.19!146.31!ARID5A;;chr14:35872962..35873025,-!p3@NFKBIA!1.19!36.32!NFKBIA;;chr8:123794038..123794056,+!p5@ZHX2!1.19!14.50!ZHX2;;chr7:137620650..137620677,-!p3@CREB3L2!1.18!14.25!CREB3L2;;chr19:54041645..54041661,+!p5@ZNF331!1.18!14.25!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.18!14.12!ZNF683;;chr2:157189617..157189667,-!p4@NR4A2!1.18!14.12!NR4A2;;chr10:104154246..104154347,+!p3@NFKB2!1.17!84.58!NFKB2;;chr1:91487774..91487802,-!p2@ZNF644!1.16!35.17!ZNF644;;chr3:101546827..101546847,+!p2@NFKBIZ!1.16!18.99!NFKBIZ;;chr12:72056749..72056767,+!p6@THAP2!1.16!15.02!THAP2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.15!1394.19!ZFP36L2;;chr10:3827371..3827386,-!p2@KLF6!1.15!109.86!KLF6;;chr9:102584241..102584261,+!p4@NR4A3!1.15!20.41!NR4A3;;chr1:37940170..37940190,+!p1@ZC3H12A!1.14!156.07!ZC3H12A;;chr1:59249645..59249656,-!p4@JUN!1.14!32.09!JUN;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.83!BCL11B;;chr7:99680193..99680204,-!p2@ZNF3!1.14!12.71!ZNF3;;chr8:102218439..102218455,-!p3@ZNF706!1.13!12.58!ZNF706;;chr4:38665769..38665801,+!p2@KLF3!1.12!108.71!KLF3;;chr7:106809470..106809481,+!p2@HBP1!1.12!17.33!HBP1;;chr1:25256439..25256476,-!p3@RUNX3!1.12!12.19!RUNX3;;chr6:91006575..91006602,-!p2@BACH2!1.11!17.58!BACH2;;chr4:109090075..109090095,-!p2@LEF1!1.11!11.94!LEF1;;chr4:57522513..57522548,-!p4@HOPX!1.11!11.81!HOPX;;chr19:18392422..18392440,-!p1@JUND!1.10!1604.42!JUND;;chr22:38597987..38598021,+!p2@MAFF!1.10!71.36!MAFF;;chr2:145275162..145275202,-!p2@ZEB2!1.10!69.05!ZEB2;;chr3:39195139..39195150,-!p3@CSRNP1!1.10!14.89!CSRNP1;;chr14:69262947..69262986,-!p3@ZFP36L1!1.10!14.25!ZFP36L1;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.55!IKZF3;;chr11:67007548..67007610,+!p3@KDM2A!1.09!83.94!KDM2A;;chr8:41909982..41910009,-!p2@KAT6A!1.09!12.83!KAT6A;;chr11:85375237..85375277,-!p4@CREBZF!1.08!12.83!CREBZF;;chr14:35872453..35872485,-!p2@NFKBIA!1.07!26.82!NFKBIA;;chr8:67525473..67525518,-!p1@MYBL1!1.07!25.03!MYBL1;;chr8:60031619..60031676,-!p1@TOX!1.07!23.36!TOX;;chr17:36861675..36861697,+!p3@MLLT6!1.06!24.64!MLLT6;;chr12:51158359..51158395,+!p4@ATF1!1.06!10.40!ATF1;;chr19:45504688..45504782,+!p1@RELB!1.05!62.76!RELB;;chr15:60884747..60884774,-!p3@RORA!1.05!25.16!RORA;;chr11:67007611..67007622,+!p6@KDM2A!1.05!13.86!KDM2A;;chr18:46475696..46475713,-!p1@SMAD7!1.05!11.42!SMAD7;;chr16:89789271..89789291,+!p5@ZNF276!1.05!10.27!ZNF276;;chr17:45810816..45810838,+!p2@TBX21!1.05!10.14!TBX21;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!522.36!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!1.04!363.47!DDIT3;;chrX:106960249..106960260,-!p5@TSC22D3!1.04!15.79!TSC22D3;;chr10:35484090..35484104,+!p6@CREM!1.04!10.01!CREM;;chr7:50344144..50344157,+!p6@IKZF1!1.04!9.88!IKZF1;;chr11:128392085..128392232,-!p1@ETS1!1.03!328.30!ETS1;;chr14:64971461..64971542,+!p1@ZBTB1!1.03!198.03!ZBTB1;;chr14:64971438..64971450,+!p2@ZBTB1!1.03!22.72!ZBTB1;;chr6:12009042..12009092,+!p6@HIVEP1!1.03!12.83!HIVEP1;;chr9:102584278..102584285,+!p5@NR4A3!1.03!9.75!NR4A3;;chr12:54778471..54778528,-!p1@ZNF385A!1.03!9.75!ZNF385A;;chr1:92951607..92951661,-!p1@GFI1!1.03!9.75!GFI1;;chr17:38497715..38497734,+!p8@RARA!1.03!9.63!RARA;;chr6:12011943..12012015,+!p2@HIVEP1!1.02!31.19!HIVEP1;;chr19:12721790..12721810,+!p2@ZNF791!1.02!26.44!ZNF791;;chr15:57211634..57211657,+!p5@TCF12!1.02!14.50!TCF12;;chr11:13299319..13299424,+!p1@ARNTL!1.01!95.87!ARNTL;;chr20:44600199..44600219,-!p3@ZNF335!1.01!12.58!ZNF335;;chr14:90085458..90085557,-!p1@FOXN3!1.00!96.64!FOXN3;;chr5:172483347..172483407,+!p1@C5orf41!1.00!69.31!CREBRF;;chr2:28616358..28616380,+!p3@FOSL2!1.00!47.87!FOSL2;;chr19:45252008..45252024,+!p2@BCL3!1.00!30.42!BCL3;;chr15:90544532..90544563,+!p1@ZNF710!1.00!18.35!ZNF710;;chr2:97203110..97203159,+!p4@ARID5A!1.00!8.98!ARID5A;;chr2:174828545..174828644,-!p1@SP3!0.99!137.84!SP3;;chr7:127032330..127032356,-!p3@ZNF800!0.99!11.29!ZNF800;;chr10:35416223..35416234,+!p12@CREM!0.99!8.86!CREM;;chr15:31619326..31619390,+!p2@KLF13!0.98!102.16!KLF13;;chr13:74708029..74708077,-!p2@KLF12!0.98!24.77!KLF12;;chr1:45805693..45805718,+!p3@TOE1!0.98!18.87!TOE1;;chr13:41593425..41593480,-!p1@ELF1!0.97!54.29!ELF1;;chr6:143266297..143266356,-!p1@HIVEP2!0.97!41.07!HIVEP2;;chr16:68119324..68119364,+!p1@NFATC3!0.97!38.50!NFATC3;;chr19:53289995..53290050,-!p1@ZNF600!0.97!35.29!ZNF600;;chr9:73028332..73028385,-!p3@KLF9!0.97!29.90!KLF9;;chr9:32550839..32550962,-!p3@TOPORS!0.97!21.18!TOPORS;;chr6:157098579..157098634,+!p4@ARID1B!0.97!18.99!ARID1B;;chr9:3526360..3526421,-!p5@RFX3!0.97!15.79!RFX3;;chr14:35872926..35872951,-!p4@NFKBIA!0.97!11.81!NFKBI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| |expression_enrichment_score=chr1:25256756..25256774,-!p1@RUNX3!2.49!555.21!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!2.29!261.69!STAT4;;chr17:45810594..45810608,+!p1@TBX21!2.13!135.15!TBX21;;chr2:145271342..145271377,-!p5@ZEB2!2.00!98.82!ZEB2;;chr20:50159198..50159299,-!p1@NFATC2!1.98!136.69!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.93!1456.31!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!1.87!358.72!NR4A2;;chr9:117150254..117150271,-!p1@AKNA!1.84!180.96!AKNA;;chr7:50343634..50343717,+!p2@IKZF1!1.82!65.71!IKZF1;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.48!PLEK;;chr2:192015677..192015691,-!p3@STAT4!1.75!55.19!STAT4;;chr6:106546808..106546833,+!p3@PRDM1!1.74!67.77!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!1.74!53.90!IRF8;;chr15:60884706..60884743,-!p1@RORA!1.73!257.07!RORA;;chr19:54041669..54041697,+!p2@ZNF331!1.73!52.11!ZNF331;;chr14:75745523..75745537,+!p1@FOS!1.72!5814.07!FOS;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.70!ZNF331;;chr17:38020392..38020477,-!p1@IKZF3!1.67!46.20!IKZF3;;chr10:8096631..8096660,+!p1@GATA3!1.65!52.88!GATA3;;chr1:25291475..25291511,-!p2@RUNX3!1.65!44.02!RUNX3;;chr20:56195474..56195506,-!p1@ZBP1!1.65!43.25!ZBP1;;chr1:59249688..59249703,-!p3@JUN!1.64!245.91!JUN;;chr8:123793988..123794016,+!p1@ZHX2!1.64!73.16!ZHX2;;chr3:63953435..63953499,+!p1@ATXN7!1.64!42.61!ATXN7;;chr14:64971288..64971316,-!p2@ZBTB25!1.61!117.56!ZBTB25;;chr3:39195075..39195088,-!p1@CSRNP1!1.58!224.34!CSRNP1;;chr9:3525727..3525828,-!p2@RFX3!1.57!90.61!RFX3;;chr12:72056800..72056834,+!p1@THAP2!1.57!48.77!THAP2;;chr8:81397820..81397836,+!p2@ZBTB10!1.57!45.31!ZBTB10;;chr9:102584262..102584276,+!p1@NR4A3!1.56!76.24!NR4A3;;chr1:59249707..59249727,-!p1@JUN!1.55!1359.79!JUN;;chrX:106960285..106960299,-!p1@TSC22D3!1.55!874.40!TSC22D3;;chr5:133450365..133450444,+!p1@TCF7!1.55!152.86!TCF7;;chr10:8096772..8096787,+!p2@GATA3!1.55!40.81!GATA3;;chr5:133451294..133451310,+!p2@TCF7!1.55!34.65!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.53!33.24!SP140;;chrY:21906594..21906622,-!p1@KDM5D!1.52!32.34!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.50!41.07!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.50!34.78!HOPX;;chr10:35484053..35484076,+!p1@CREM!1.49!72.26!CREM;;chr8:81397876..81397898,+!p5@ZBTB10!1.49!35.17!ZBTB10;;chr10:3824332..3824425,-!p4@KLF6!1.48!46.08!KLF6;;chr19:16435625..16435682,+!p1@KLF2!1.47!874.27!KLF2;;chr14:75746722..75746777,+!p2@FOS!1.47!36.32!FOS;;chr1:151030536..151030549,+!p8@MLLT11!1.47!28.75!MLLT11;;chr2:145277640..145277771,-!p1@ZEB2!1.44!339.21!ZEB2;;chr6:391743..391759,+!p1@IRF4!1.43!25.80!IRF4;;chr8:67525443..67525459,-!p2@MYBL1!1.42!37.60!MYBL1;;chr8:81397846..81397860,+!p3@ZBTB10!1.42!31.44!ZBTB10;;chr14:35873947..35873965,-!p1@NFKBIA!1.41!1511.37!NFKBIA;;chr5:131826457..131826514,-!p1@IRF1!1.41!928.05!IRF1;;chr3:5020939..5020952,+!p2@BHLHE40!1.41!75.98!BHLHE40;;chr17:37934365..37934387,-!p2@IKZF3!1.41!24.77!IKZF3;;chr12:72056773..72056796,+!p3@THAP2!1.40!31.06!THAP2;;chr13:74707894..74707947,-!p6@KLF12!1.39!26.44!KLF12;;chr4:57522598..57522664,-!p3@HOPX!1.39!23.74!HOPX;;chr4:103422499..103422632,+!p1@NFKB1!1.38!459.21!NFKB1;;chr19:19729477..19729542,-!p1@PBX4!1.37!46.72!PBX4;;chr2:61108878..61108891,+!p5@REL!1.37!22.33!REL;;chrX:106960180..106960197,-!p2@TSC22D3!1.36!82.14!TSC22D3;;chr7:104654690..104654704,+!p2@MLL5!1.36!42.87!MLL5;;chr2:231090471..231090504,+!p2@SP140!1.35!21.18!SP140;;chrX:106960221..106960236,-!p3@TSC22D3!1.34!56.98!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!1.34!47.74!BACH2;;chr6:106546834..106546850,+!p4@PRDM1!1.34!21.05!PRDM1;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.66!IKZF1;;chr10:35416142..35416169,+!p3@CREM!1.32!52.36!CREM;;chr11:47400078..47400106,-!p1@SPI1!1.32!20.02!SPI1;;chr4:57522674..57522699,-!p5@HOPX!1.32!19.89!HOPX;;chr17:38497662..38497713,+!p4@RARA!1.31!22.59!RARA;;chr3:23986824..23986848,+!p2@NR1D2!1.30!103.70!NR1D2;;chr19:45972701..45972774,+!p2@FOSB!1.30!25.80!FOSB;;chr10:104154415..104154434,+!p5@NFKB2!1.30!19.12!NFKB2;;chr2:61108695..61108753,+!p1@REL!1.29!125.13!REL;;chr7:50344289..50344323,+!p1@IKZF1!1.29!18.61!IKZF1;;chr21:36421347..36421380,-!p8@RUNX1!1.29!18.61!RUNX1;;chr7:104654718..104654741,+!p3@MLL5!1.28!26.05!MLL5;;chr4:109087445..109087463,-!p1@LEF1!1.28!17.84!LEF1;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.11!NR4A3;;chr8:123793252..123793266,+!p10@ZHX2!1.27!17.71!ZHX2;;chr14:35874077..35874091,-!p8@NFKBIA!1.27!17.45!NFKBIA;;chr1:10754477..10754517,-!p1@CASZ1!1.26!28.24!CASZ1;;chr1:25256175..25256228,-!p5@RUNX3!1.26!17.33!RUNX3;;chr10:3827389..3827408,-!p1@KLF6!1.25!1258.28!KLF6;;chr17:7388010..7388017,-!p5@ZBTB4!1.25!28.11!ZBTB4;;chr11:113930425..113930471,+!p1@ZBTB16!1.25!23.87!ZBTB16;;chr2:208394817..208394834,+!p3@CREB1!1.24!65.45!CREB1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.28!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.24!16.56!PLEK;;chr6:106546731..106546755,+!p5@PRDM1!1.23!15.91!PRDM1;;chr19:47616992..47617011,-!p4@ZC3H4!1.22!33.50!ZC3H4;;chr19:12902289..12902307,+!p1@JUNB!1.21!3387.36!JUNB;;chr9:102584159..102584174,+!p2@NR4A3!1.21!27.59!NR4A3;;chr18:3449330..3449344,+!p10@TGIF1!1.21!20.28!TGIF1;;chr6:106546786..106546802,+!p6@PRDM1!1.21!15.27!PRDM1;;chr7:50344251..50344288,+!p3@IKZF1!1.21!15.27!IKZF1;;chr3:71542615..71542644,-!p12@FOXP1!1.21!15.14!FOXP1;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.61!CSRNP1;;chr2:61108808..61108821,+!p3@REL!1.20!18.61!REL;;chr3:27763807..27763822,-!p1@EOMES!1.20!15.02!EOMES;;chr17:38020516..38020544,-!p5@IKZF3!1.20!15.02!IKZF3;;chr2:97202480..97202499,+!p1@ARID5A!1.19!146.31!ARID5A;;chr14:35872962..35873025,-!p3@NFKBIA!1.19!36.32!NFKBIA;;chr8:123794038..123794056,+!p5@ZHX2!1.19!14.50!ZHX2;;chr7:137620650..137620677,-!p3@CREB3L2!1.18!14.25!CREB3L2;;chr19:54041645..54041661,+!p5@ZNF331!1.18!14.25!ZNF331;;chr1:26697243..26697258,-!p1@ZNF683!1.18!14.12!ZNF683;;chr2:157189617..157189667,-!p4@NR4A2!1.18!14.12!NR4A2;;chr10:104154246..104154347,+!p3@NFKB2!1.17!84.58!NFKB2;;chr1:91487774..91487802,-!p2@ZNF644!1.16!35.17!ZNF644;;chr3:101546827..101546847,+!p2@NFKBIZ!1.16!18.99!NFKBIZ;;chr12:72056749..72056767,+!p6@THAP2!1.16!15.02!THAP2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.15!1394.19!ZFP36L2;;chr10:3827371..3827386,-!p2@KLF6!1.15!109.86!KLF6;;chr9:102584241..102584261,+!p4@NR4A3!1.15!20.41!NR4A3;;chr1:37940170..37940190,+!p1@ZC3H12A!1.14!156.07!ZC3H12A;;chr1:59249645..59249656,-!p4@JUN!1.14!32.09!JUN;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.83!BCL11B;;chr7:99680193..99680204,-!p2@ZNF3!1.14!12.71!ZNF3;;chr8:102218439..102218455,-!p3@ZNF706!1.13!12.58!ZNF706;;chr4:38665769..38665801,+!p2@KLF3!1.12!108.71!KLF3;;chr7:106809470..106809481,+!p2@HBP1!1.12!17.33!HBP1;;chr1:25256439..25256476,-!p3@RUNX3!1.12!12.19!RUNX3;;chr6:91006575..91006602,-!p2@BACH2!1.11!17.58!BACH2;;chr4:109090075..109090095,-!p2@LEF1!1.11!11.94!LEF1;;chr4:57522513..57522548,-!p4@HOPX!1.11!11.81!HOPX;;chr19:18392422..18392440,-!p1@JUND!1.10!1604.42!JUND;;chr22:38597987..38598021,+!p2@MAFF!1.10!71.36!MAFF;;chr2:145275162..145275202,-!p2@ZEB2!1.10!69.05!ZEB2;;chr3:39195139..39195150,-!p3@CSRNP1!1.10!14.89!CSRNP1;;chr14:69262947..69262986,-!p3@ZFP36L1!1.10!14.25!ZFP36L1;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.55!IKZF3;;chr11:67007548..67007610,+!p3@KDM2A!1.09!83.94!KDM2A;;chr8:41909982..41910009,-!p2@KAT6A!1.09!12.83!KAT6A;;chr11:85375237..85375277,-!p4@CREBZF!1.08!12.83!CREBZF;;chr14:35872453..35872485,-!p2@NFKBIA!1.07!26.82!NFKBIA;;chr8:67525473..67525518,-!p1@MYBL1!1.07!25.03!MYBL1;;chr8:60031619..60031676,-!p1@TOX!1.07!23.36!TOX;;chr17:36861675..36861697,+!p3@MLLT6!1.06!24.64!MLLT6;;chr12:51158359..51158395,+!p4@ATF1!1.06!10.40!ATF1;;chr19:45504688..45504782,+!p1@RELB!1.05!62.76!RELB;;chr15:60884747..60884774,-!p3@RORA!1.05!25.16!RORA;;chr11:67007611..67007622,+!p6@KDM2A!1.05!13.86!KDM2A;;chr18:46475696..46475713,-!p1@SMAD7!1.05!11.42!SMAD7;;chr16:89789271..89789291,+!p5@ZNF276!1.05!10.27!ZNF276;;chr17:45810816..45810838,+!p2@TBX21!1.05!10.14!TBX21;;chr3:101568349..101568365,+!p1@NFKBIZ!1.04!522.36!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!1.04!363.47!DDIT3;;chrX:106960249..106960260,-!p5@TSC22D3!1.04!15.79!TSC22D3;;chr10:35484090..35484104,+!p6@CREM!1.04!10.01!CREM;;chr7:50344144..50344157,+!p6@IKZF1!1.04!9.88!IKZF1;;chr11:128392085..128392232,-!p1@ETS1!1.03!328.30!ETS1;;chr14:64971461..64971542,+!p1@ZBTB1!1.03!198.03!ZBTB1;;chr14:64971438..64971450,+!p2@ZBTB1!1.03!22.72!ZBTB1;;chr6:12009042..12009092,+!p6@HIVEP1!1.03!12.83!HIVEP1;;chr9:102584278..102584285,+!p5@NR4A3!1.03!9.75!NR4A3;;chr12:54778471..54778528,-!p1@ZNF385A!1.03!9.75!ZNF385A;;chr1:92951607..92951661,-!p1@GFI1!1.03!9.75!GFI1;;chr17:38497715..38497734,+!p8@RARA!1.03!9.63!RARA;;chr6:12011943..12012015,+!p2@HIVEP1!1.02!31.19!HIVEP1;;chr19:12721790..12721810,+!p2@ZNF791!1.02!26.44!ZNF791;;chr15:57211634..57211657,+!p5@TCF12!1.02!14.50!TCF12;;chr11:13299319..13299424,+!p1@ARNTL!1.01!95.87!ARNTL;;chr20:44600199..44600219,-!p3@ZNF335!1.01!12.58!ZNF335;;chr14:90085458..90085557,-!p1@FOXN3!1.00!96.64!FOXN3;;chr5:172483347..172483407,+!p1@C5orf41!1.00!69.31!CREBRF;;chr2:28616358..28616380,+!p3@FOSL2!1.00!47.87!FOSL2;;chr19:45252008..45252024,+!p2@BCL3!1.00!30.42!BCL3;;chr15:90544532..90544563,+!p1@ZNF710!1.00!18.35!ZNF710;;chr2:97203110..97203159,+!p4@ARID5A!1.00!8.98!ARID5A;;chr2:174828545..174828644,-!p1@SP3!0.99!137.84!SP3;;chr7:127032330..127032356,-!p3@ZNF800!0.99!11.29!ZNF800;;chr10:35416223..35416234,+!p12@CREM!0.99!8.86!CREM;;chr15:31619326..31619390,+!p2@KLF13!0.98!102.16!KLF13;;chr13:74708029..74708077,-!p2@KLF12!0.98!24.77!KLF12;;chr1:45805693..45805718,+!p3@TOE1!0.98!18.87!TOE1;;chr13:41593425..41593480,-!p1@ELF1!0.97!54.29!ELF1;;chr6:143266297..143266356,-!p1@HIVEP2!0.97!41.07!HIVEP2;;chr16:68119324..68119364,+!p1@NFATC3!0.97!38.50!NFATC3;;chr19:53289995..53290050,-!p1@ZNF600!0.97!35.29!ZNF600;;chr9:73028332..73028385,-!p3@KLF9!0.97!29.90!KLF9;;chr9:32550839..32550962,-!p3@TOPORS!0.97!21.18!TOPORS;;chr6:157098579..157098634,+!p4@ARID1B!0.97!18.99!ARID1B;;chr9:3526360..3526421,-!p5@RFX3!0.97!15.79!RFX3;;chr14:35872926..35872951,-!p4@NFKBIA!0.97!11.81!NFKBI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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |ffid_belonging_in_development=CL:0000134,CL:0000051 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
| Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Natural%2520Killer%2520Cells%252c%2520donor3.CNhs12001.11387-118C1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11387-118C1 | |id=FF:11387-118C1 | ||
|is_a=EFO:0002091;;FF:0000119 | |is_a=EFO:0002091;;FF:0000119 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12001 | |library_id=CNhs12001 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12001 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11387 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CAGATC.11387 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11387 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CAGATC.11387 | |||
|name=Natural Killer Cells, donor3 | |name=Natural Killer Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 51: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12001,LSID837,release011,COMPLETED | |profile_hcage=CNhs12001,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
| Line 67: | Line 82: | ||
|rna_tube_id=118C1 | |rna_tube_id=118C1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.CAGATC | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
| Line 90: | Line 106: | ||
|top_motifs=PAX3,7:3.92480849766;RORA:3.73620423722;CREB1:3.68674465084;ATF4:3.63012502111;ATF5_CREB3:3.44412721674;RFX2..5_RFXANK_RFXAP:3.44029153181;RUNX1..3:3.43134499472;NFKB1_REL_RELA:3.12909292256;FOX{D1,D2}:3.05498544283;BPTF:2.98591698289;PAX2:2.74528227082;FOXO1,3,4:2.74501368098;PITX1..3:2.72120159627;T:2.71767618255;FOXP1:2.58713334956;ELF1,2,4:2.57384628841;ETS1,2:2.52063711526;RFX1:2.44107169574;FOXN1:2.40690427759;DMAP1_NCOR{1,2}_SMARC:2.38468603333;ZBTB16:2.13484100227;FOX{F1,F2,J1}:2.10619523971;SPI1:2.06438895822;JUN:2.0554202911;TOPORS:1.97796580652;NKX2-1,4:1.95532649486;HMX1:1.95189728709;TGIF1:1.89082753814;TBX4,5:1.70250588751;IRF1,2:1.52938073082;ATF2:1.52463012005;SPIB:1.49430755133;HIF1A:1.43663195025;NKX6-1,2:1.40769414308;IKZF2:1.33153359243;ATF6:1.33067541288;TLX2:1.20564941322;ZNF384:1.19336299375;BREu{core}:1.10065316064;FOS_FOS{B,L1}_JUN{B,D}:0.983151606592;FOSL2:0.905133608831;NANOG{mouse}:0.781848940111;EP300:0.767804095243;SREBF1,2:0.736269348331;MAFB:0.729746173847;NFATC1..3:0.682424079553;BACH2:0.679165109207;EGR1..3:0.667408452412;LEF1_TCF7_TCF7L1,2:0.654244549567;HMGA1,2:0.634055894021;NFIL3:0.625452805661;PAX4:0.556246146659;PAX6:0.543744976305;FOXL1:0.535916661894;IRF7:0.530712341122;SOX2:0.48014415846;ELK1,4_GABP{A,B1}:0.478598204674;NFE2:0.472038133611;TFDP1:0.453954143316;HBP1_HMGB_SSRP1_UBTF:0.453666655493;FOX{I1,J2}:0.435228203696;FOXP3:0.432626957951;RREB1:0.359189040709;MYB:0.333809826416;AIRE:0.279035260919;CDX1,2,4:0.261993492421;PPARG:0.26034512684;FOXD3:0.223294580474;SMAD1..7,9:0.213097413236;NFE2L1:0.18946495382;RXRA_VDR{dimer}:0.184735543017;CEBPA,B_DDIT3:0.162450726986;STAT2,4,6:0.120654024656;PDX1:0.0772346801502;NKX3-1:0.0664982221682;GATA6:0.0289088812657;AHR_ARNT_ARNT2:-0.0120545226916;NFY{A,B,C}:-0.0258419509301;NFE2L2:-0.0681142430653;MYFfamily:-0.137199516987;HLF:-0.159529597683;RBPJ:-0.200602240108;GCM1,2:-0.218355503542;POU2F1..3:-0.232171271951;SOX5:-0.24523193276;ZFP161:-0.267535098022;NR5A1,2:-0.278513958142;MTE{core}:-0.285403098934;HOX{A6,A7,B6,B7}:-0.291883676843;FOXQ1:-0.299972236965;CUX2:-0.327915709262;E2F1..5:-0.400414353566;ZEB1:-0.420383909147;PATZ1:-0.439290727055;SRF:-0.441392545521;TFAP4:-0.469489594471;TFAP2B:-0.469937069326;MED-1{core}:-0.493229563993;NRF1:-0.500997638832;DBP:-0.525706976257;PBX1:-0.530572951725;CRX:-0.536391767306;GLI1..3:-0.552040100678;SNAI1..3:-0.57615677679;NFIX:-0.614070308138;TAL1_TCF{3,4,12}:-0.628804859141;SPZ1:-0.629089041132;ALX4:-0.629400099529;EVI1:-0.650517596087;STAT1,3:-0.657599486531;HSF1,2:-0.660563545074;MTF1:-0.673693397071;HES1:-0.718998924499;GATA4:-0.731623819227;TFAP2{A,C}:-0.747445400382;HNF4A_NR2F1,2:-0.75108296308;MYOD1:-0.753025991391;PRRX1,2:-0.754240897065;SP1:-0.755986683022;bHLH_family:-0.759203044154;PAX5:-0.76144782323;SOX{8,9,10}:-0.764981160838;REST:-0.799957375451;NR1H4:-0.807886323915;AR:-0.81262956688;MAZ:-0.839635965756;FOXM1:-0.859759850214;XBP1:-0.863368998753;NHLH1,2:-0.863633170719;HOXA9_MEIS1:-0.86837378506;MZF1:-0.897404438168;NANOG:-0.90484884546;STAT5{A,B}:-0.927294783197;HNF1A:-0.968206371602;LMO2:-0.975936915545;TFCP2:-0.984058285625;MEF2{A,B,C,D}:-0.991978473541;OCT4_SOX2{dimer}:-1.07058860464;ZBTB6:-1.07110933561;FOXA2:-1.12264287471;RXR{A,B,G}:-1.13351958682;HIC1:-1.1689183495;ZNF148:-1.17656983839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21194681187;ZNF423:-1.22844595361;YY1:-1.24261706425;NKX2-2,8:-1.24517739811;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27592821182;GFI1:-1.27726376992;ESRRA:-1.30511482754;TBP:-1.3226187504;XCPE1{core}:-1.32822936312;PAX8:-1.36683687291;TEF:-1.3814368194;ZNF143:-1.39027863908;LHX3,4:-1.39068265841;ZIC1..3:-1.39409330054;HOX{A5,B5}:-1.47777336293;MYBL2:-1.50513773126;POU1F1:-1.5751053838;UFEwm:-1.59439041146;POU5F1:-1.61780822371;TP53:-1.66604228805;SOX17:-1.71782285438;GTF2I:-1.77799094264;GTF2A1,2:-1.80919707849;EN1,2:-1.83127851788;ZNF238:-1.84384728114;POU6F1:-1.95510460988;TEAD1:-1.9784583252;TLX1..3_NFIC{dimer}:-2.02775002797;ALX1:-2.04307080094;GZF1:-2.04525542833;PRDM1:-2.06644064359;NKX2-3_NKX2-5:-2.07608325412;CDC5L:-2.09379686633;HAND1,2:-2.09986465821;ONECUT1,2:-2.13379626881;NR6A1:-2.16005508702;GFI1B:-2.16131707284;ESR1:-2.16515454006;ARID5B:-2.18761884913;VSX1,2:-2.19238122958;IKZF1:-2.24033576453;EBF1:-2.31124151104;POU3F1..4:-2.3121966674;HOX{A4,D4}:-2.32105220445;KLF4:-2.50480617668;NKX3-2:-2.89118297256;ADNP_IRX_SIX_ZHX:-2.94545569043;PAX1,9:-2.97362319685;NR3C1:-3.6136818736 | |top_motifs=PAX3,7:3.92480849766;RORA:3.73620423722;CREB1:3.68674465084;ATF4:3.63012502111;ATF5_CREB3:3.44412721674;RFX2..5_RFXANK_RFXAP:3.44029153181;RUNX1..3:3.43134499472;NFKB1_REL_RELA:3.12909292256;FOX{D1,D2}:3.05498544283;BPTF:2.98591698289;PAX2:2.74528227082;FOXO1,3,4:2.74501368098;PITX1..3:2.72120159627;T:2.71767618255;FOXP1:2.58713334956;ELF1,2,4:2.57384628841;ETS1,2:2.52063711526;RFX1:2.44107169574;FOXN1:2.40690427759;DMAP1_NCOR{1,2}_SMARC:2.38468603333;ZBTB16:2.13484100227;FOX{F1,F2,J1}:2.10619523971;SPI1:2.06438895822;JUN:2.0554202911;TOPORS:1.97796580652;NKX2-1,4:1.95532649486;HMX1:1.95189728709;TGIF1:1.89082753814;TBX4,5:1.70250588751;IRF1,2:1.52938073082;ATF2:1.52463012005;SPIB:1.49430755133;HIF1A:1.43663195025;NKX6-1,2:1.40769414308;IKZF2:1.33153359243;ATF6:1.33067541288;TLX2:1.20564941322;ZNF384:1.19336299375;BREu{core}:1.10065316064;FOS_FOS{B,L1}_JUN{B,D}:0.983151606592;FOSL2:0.905133608831;NANOG{mouse}:0.781848940111;EP300:0.767804095243;SREBF1,2:0.736269348331;MAFB:0.729746173847;NFATC1..3:0.682424079553;BACH2:0.679165109207;EGR1..3:0.667408452412;LEF1_TCF7_TCF7L1,2:0.654244549567;HMGA1,2:0.634055894021;NFIL3:0.625452805661;PAX4:0.556246146659;PAX6:0.543744976305;FOXL1:0.535916661894;IRF7:0.530712341122;SOX2:0.48014415846;ELK1,4_GABP{A,B1}:0.478598204674;NFE2:0.472038133611;TFDP1:0.453954143316;HBP1_HMGB_SSRP1_UBTF:0.453666655493;FOX{I1,J2}:0.435228203696;FOXP3:0.432626957951;RREB1:0.359189040709;MYB:0.333809826416;AIRE:0.279035260919;CDX1,2,4:0.261993492421;PPARG:0.26034512684;FOXD3:0.223294580474;SMAD1..7,9:0.213097413236;NFE2L1:0.18946495382;RXRA_VDR{dimer}:0.184735543017;CEBPA,B_DDIT3:0.162450726986;STAT2,4,6:0.120654024656;PDX1:0.0772346801502;NKX3-1:0.0664982221682;GATA6:0.0289088812657;AHR_ARNT_ARNT2:-0.0120545226916;NFY{A,B,C}:-0.0258419509301;NFE2L2:-0.0681142430653;MYFfamily:-0.137199516987;HLF:-0.159529597683;RBPJ:-0.200602240108;GCM1,2:-0.218355503542;POU2F1..3:-0.232171271951;SOX5:-0.24523193276;ZFP161:-0.267535098022;NR5A1,2:-0.278513958142;MTE{core}:-0.285403098934;HOX{A6,A7,B6,B7}:-0.291883676843;FOXQ1:-0.299972236965;CUX2:-0.327915709262;E2F1..5:-0.400414353566;ZEB1:-0.420383909147;PATZ1:-0.439290727055;SRF:-0.441392545521;TFAP4:-0.469489594471;TFAP2B:-0.469937069326;MED-1{core}:-0.493229563993;NRF1:-0.500997638832;DBP:-0.525706976257;PBX1:-0.530572951725;CRX:-0.536391767306;GLI1..3:-0.552040100678;SNAI1..3:-0.57615677679;NFIX:-0.614070308138;TAL1_TCF{3,4,12}:-0.628804859141;SPZ1:-0.629089041132;ALX4:-0.629400099529;EVI1:-0.650517596087;STAT1,3:-0.657599486531;HSF1,2:-0.660563545074;MTF1:-0.673693397071;HES1:-0.718998924499;GATA4:-0.731623819227;TFAP2{A,C}:-0.747445400382;HNF4A_NR2F1,2:-0.75108296308;MYOD1:-0.753025991391;PRRX1,2:-0.754240897065;SP1:-0.755986683022;bHLH_family:-0.759203044154;PAX5:-0.76144782323;SOX{8,9,10}:-0.764981160838;REST:-0.799957375451;NR1H4:-0.807886323915;AR:-0.81262956688;MAZ:-0.839635965756;FOXM1:-0.859759850214;XBP1:-0.863368998753;NHLH1,2:-0.863633170719;HOXA9_MEIS1:-0.86837378506;MZF1:-0.897404438168;NANOG:-0.90484884546;STAT5{A,B}:-0.927294783197;HNF1A:-0.968206371602;LMO2:-0.975936915545;TFCP2:-0.984058285625;MEF2{A,B,C,D}:-0.991978473541;OCT4_SOX2{dimer}:-1.07058860464;ZBTB6:-1.07110933561;FOXA2:-1.12264287471;RXR{A,B,G}:-1.13351958682;HIC1:-1.1689183495;ZNF148:-1.17656983839;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21194681187;ZNF423:-1.22844595361;YY1:-1.24261706425;NKX2-2,8:-1.24517739811;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27592821182;GFI1:-1.27726376992;ESRRA:-1.30511482754;TBP:-1.3226187504;XCPE1{core}:-1.32822936312;PAX8:-1.36683687291;TEF:-1.3814368194;ZNF143:-1.39027863908;LHX3,4:-1.39068265841;ZIC1..3:-1.39409330054;HOX{A5,B5}:-1.47777336293;MYBL2:-1.50513773126;POU1F1:-1.5751053838;UFEwm:-1.59439041146;POU5F1:-1.61780822371;TP53:-1.66604228805;SOX17:-1.71782285438;GTF2I:-1.77799094264;GTF2A1,2:-1.80919707849;EN1,2:-1.83127851788;ZNF238:-1.84384728114;POU6F1:-1.95510460988;TEAD1:-1.9784583252;TLX1..3_NFIC{dimer}:-2.02775002797;ALX1:-2.04307080094;GZF1:-2.04525542833;PRDM1:-2.06644064359;NKX2-3_NKX2-5:-2.07608325412;CDC5L:-2.09379686633;HAND1,2:-2.09986465821;ONECUT1,2:-2.13379626881;NR6A1:-2.16005508702;GFI1B:-2.16131707284;ESR1:-2.16515454006;ARID5B:-2.18761884913;VSX1,2:-2.19238122958;IKZF1:-2.24033576453;EBF1:-2.31124151104;POU3F1..4:-2.3121966674;HOX{A4,D4}:-2.32105220445;KLF4:-2.50480617668;NKX3-2:-2.89118297256;ADNP_IRX_SIX_ZHX:-2.94545569043;PAX1,9:-2.97362319685;NR3C1:-3.6136818736 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11387-118C1;search_select_hide=table117:FF:11387-118C1 | |||
}} | }} | ||
Latest revision as of 17:56, 4 June 2020
| Name: | Natural Killer Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12001 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12001
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12001
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.818 |
| 10 | 10 | 0.0135 |
| 100 | 100 | 0.722 |
| 101 | 101 | 0.367 |
| 102 | 102 | 0.847 |
| 103 | 103 | 0.419 |
| 104 | 104 | 0.659 |
| 105 | 105 | 0.605 |
| 106 | 106 | 0.214 |
| 107 | 107 | 0.0441 |
| 108 | 108 | 0.431 |
| 109 | 109 | 0.984 |
| 11 | 11 | 0.945 |
| 110 | 110 | 0.508 |
| 111 | 111 | 0.564 |
| 112 | 112 | 0.848 |
| 113 | 113 | 0.159 |
| 114 | 114 | 0.907 |
| 115 | 115 | 0.268 |
| 116 | 116 | 0.195 |
| 117 | 117 | 0.0103 |
| 118 | 118 | 0.356 |
| 119 | 119 | 0.458 |
| 12 | 12 | 0.452 |
| 120 | 120 | 0.2 |
| 121 | 121 | 0.331 |
| 122 | 122 | 0.873 |
| 123 | 123 | 3.48323e-5 |
| 124 | 124 | 0.567 |
| 125 | 125 | 0.86 |
| 126 | 126 | 0.794 |
| 127 | 127 | 0.667 |
| 128 | 128 | 0.895 |
| 129 | 129 | 0.254 |
| 13 | 13 | 0.372 |
| 130 | 130 | 0.207 |
| 131 | 131 | 0.293 |
| 132 | 132 | 0.155 |
| 133 | 133 | 0.569 |
| 134 | 134 | 0.694 |
| 135 | 135 | 0.192 |
| 136 | 136 | 0.698 |
| 137 | 137 | 0.0302 |
| 138 | 138 | 0.772 |
| 139 | 139 | 0.22 |
| 14 | 14 | 0.447 |
| 140 | 140 | 0.868 |
| 141 | 141 | 0.683 |
| 142 | 142 | 0.526 |
| 143 | 143 | 0.0325 |
| 144 | 144 | 0.956 |
| 145 | 145 | 0.569 |
| 146 | 146 | 0.405 |
| 147 | 147 | 0.0253 |
| 148 | 148 | 0.554 |
| 149 | 149 | 0.115 |
| 15 | 15 | 0.445 |
| 150 | 150 | 0.981 |
| 151 | 151 | 0.476 |
| 152 | 152 | 0.983 |
| 153 | 153 | 0.666 |
| 154 | 154 | 0.124 |
| 155 | 155 | 0.139 |
| 156 | 156 | 0.928 |
| 157 | 157 | 0.883 |
| 158 | 158 | 0.0174 |
| 159 | 159 | 0.632 |
| 16 | 16 | 0.196 |
| 160 | 160 | 0.0348 |
| 161 | 161 | 0.723 |
| 162 | 162 | 0.0179 |
| 163 | 163 | 0.897 |
| 164 | 164 | 0.12 |
| 165 | 165 | 0.839 |
| 166 | 166 | 0.385 |
| 167 | 167 | 0.164 |
| 168 | 168 | 0.807 |
| 169 | 169 | 0.24 |
| 17 | 17 | 0.686 |
| 18 | 18 | 0.618 |
| 19 | 19 | 0.0405 |
| 2 | 2 | 0.0747 |
| 20 | 20 | 0.0961 |
| 21 | 21 | 0.818 |
| 22 | 22 | 0.258 |
| 23 | 23 | 0.879 |
| 24 | 24 | 0.589 |
| 25 | 25 | 0.204 |
| 26 | 26 | 0.946 |
| 27 | 27 | 0.316 |
| 28 | 28 | 0.384 |
| 29 | 29 | 0.153 |
| 3 | 3 | 0.768 |
| 30 | 30 | 0.0582 |
| 31 | 31 | 0.586 |
| 32 | 32 | 0.00476 |
| 33 | 33 | 0.503 |
| 34 | 34 | 0.449 |
| 35 | 35 | 0.56 |
| 36 | 36 | 0.0991 |
| 37 | 37 | 0.557 |
| 38 | 38 | 0.69 |
| 39 | 39 | 0.516 |
| 4 | 4 | 0.976 |
| 40 | 40 | 0.751 |
| 41 | 41 | 0.0788 |
| 42 | 42 | 0.606 |
| 43 | 43 | 0.549 |
| 44 | 44 | 0.449 |
| 45 | 45 | 0.107 |
| 46 | 46 | 0.821 |
| 47 | 47 | 0.989 |
| 48 | 48 | 0.884 |
| 49 | 49 | 0.3 |
| 5 | 5 | 0.611 |
| 50 | 50 | 0.523 |
| 51 | 51 | 0.961 |
| 52 | 52 | 0.909 |
| 53 | 53 | 0.257 |
| 54 | 54 | 0.966 |
| 55 | 55 | 0.358 |
| 56 | 56 | 0.769 |
| 57 | 57 | 0.723 |
| 58 | 58 | 0.233 |
| 59 | 59 | 0.172 |
| 6 | 6 | 0.882 |
| 60 | 60 | 0.56 |
| 61 | 61 | 0.435 |
| 62 | 62 | 0.411 |
| 63 | 63 | 0.676 |
| 64 | 64 | 0.937 |
| 65 | 65 | 0.584 |
| 66 | 66 | 0.285 |
| 67 | 67 | 0.528 |
| 68 | 68 | 0.878 |
| 69 | 69 | 0.681 |
| 7 | 7 | 0.688 |
| 70 | 70 | 0.276 |
| 71 | 71 | 0.31 |
| 72 | 72 | 0.445 |
| 73 | 73 | 0.463 |
| 74 | 74 | 0.694 |
| 75 | 75 | 0.0953 |
| 76 | 76 | 0.0548 |
| 77 | 77 | 0.00278 |
| 78 | 78 | 0.948 |
| 79 | 79 | 0.628 |
| 8 | 8 | 0.221 |
| 80 | 80 | 0.0724 |
| 81 | 81 | 0.885 |
| 82 | 82 | 0.902 |
| 83 | 83 | 0.925 |
| 84 | 84 | 0.0775 |
| 85 | 85 | 0.642 |
| 86 | 86 | 0.0667 |
| 87 | 87 | 0.852 |
| 88 | 88 | 0.775 |
| 89 | 89 | 0.0023 |
| 9 | 9 | 0.774 |
| 90 | 90 | 0.843 |
| 91 | 91 | 0.879 |
| 92 | 92 | 0.599 |
| 93 | 93 | 0.765 |
| 94 | 94 | 0.283 |
| 95 | 95 | 0.172 |
| 96 | 96 | 0.836 |
| 97 | 97 | 0.463 |
| 98 | 98 | 0.578 |
| 99 | 99 | 3.40255e-6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12001
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000623 (natural killer cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000119 (human natural killer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
