FF:577-18G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005396 | ||
|accession_numbers=CAGE;DRX009075;DRR009949;DRZ001374;DRZ002757 | |accession_numbers=CAGE;DRX009075;DRR009949;DRZ001374;DRZ002757;DRZ012724;DRZ014107 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001987,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr11:57645506..57645523,-!p1@Hand1!2.45!280.04!Hand1;;chrX:98449898..98449913,+!p2@Foxo4!2.40!764.08!Foxo4;;chr8:26958093..26958148,-!p2@Ash2l!1.98!95.32!Ash2l;;chr6:115311270..115311298,+!p1@Pparg!1.91!113.75!Pparg;;chrX:35464090..35464097,-!p1@Rhox12!1.91!81.13!Rhox12;;chr2:172375081..172375105,+!p1@Tfap2c!1.83!67.15!Tfap2c;;chrX:48499591..48499593,-!p3@Mbnl3!1.80!61.85!Mbnl3;;chr11:94981424..94981439,+!p1@Dlx3!1.73!58.89!Dlx3;;chr6:128250380..128250442,-!p2@Tead4!1.69!59.95!Tead4;;chr5:148118639..148118715,-!p1@Cdx2!1.69!48.09!Cdx2;;chrX:133654344..133654358,-!p2@Esx1!1.59!38.34!Esx1;;chr5:125523164..125523188,-!p8@Ncor2!1.56!34.95!Ncor2;;chrX:137135036..137135064,-!p4@Tsc22d3!1.55!66.52!Tsc22d3;;chr9:119893782..119893802,-!p1@Csrnp1!1.50!30.29!Csrnp1;;chrX:133654245..133654253,-!p3@Esx1!1.42!25.21!Esx1;;chr8:59799772..59799789,+!p1@Hand2!1.39!66.30!Hand2;;chr5:144951153..144951203,+!p1@Bhlha15!1.38!33.26!Bhlha15;;chr6:128250471..128250519,-!p1@Tead4!1.35!42.15!Tead4;;chr1:137155026..137155042,-!p1@Elf3!1.34!117.99!Elf3;;chr7:6649134..6649167,-!p1@Zim1!1.34!109.31!Zim1;;chr2:9800207..9800234,-!p1@Gata3!1.31!57.62!Gata3;;chr17:87153505..87153516,+!p6@Epas1!1.30!26.06!Epas1;;chr17:87153519..87153533,+!p5@Epas1!1.28!26.48!Epas1;;chr17:87153462..87153473,+!p3@Epas1!1.24!60.58!Epas1;;chr6:52190668..52190682,-!p3@Hoxa10!1.24!16.52!Hoxa10;;chr3:127336052..127336058,+!p1@Neurog2!1.24!16.52!Neurog2;;chr6:128250521..128250543,-!p3@Tead4!1.23!25.21!Tead4;;chr6:52195795..52195825,-!p1@Hoxa11!1.23!15.89!Hoxa11;;chr12:3891810..3891829,+!p2@Dnmt3a!1.22!24.36!Dnmt3a;;chr6:52195763..52195792,-!p2@Hoxa11!1.22!15.68!Hoxa11;;chr6:88148650..88148669,+!p1@Gata2!1.21!124.35!Gata2;;chr13:53568104..53568156,-!p1@Msx2!1.19!21.40!Msx2;;chrX:48559194..48559210,-!p4@Mbnl3!1.18!17.79!Mbnl3;;chr6:145813905..145813932,-!p2@Bhlhe41!1.15!25.21!Bhlhe41;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.11!46.81!Ppp1r13l;;chr13:40829137..40829205,-!p1@Tfap2a!1.10!12.92!Tfap2a;;chr17:87153240..87153254,+!p1@Epas1!1.08!217.55!Epas1;;chr13:55932591..55932622,-!p1@Pitx1!1.07!12.92!Pitx1;;chr4:43575544..43575565,+!p2@Creb3!1.06!61.64!Creb3;;chr10:79390075..79390115,+!p2@Arid3a!1.06!35.80!Arid3a;;chr9:8900459..8900489,+!p1@Pgr!1.05!10.17!Pgr;;chr10:5636354..5636373,-!p2@Esr1!1.03!9.74!Esr1;;chr6:52190467..52190500,-!p1@Hoxa10!1.02!9.53!Hoxa10;;chr7:148452314..148452329,-!p1@Irf7!1.01!66.09!Irf7;;chr6:115311308..115311317,+!p10@Pparg!1.01!9.32!Pparg;;chr9:77899745..77899755,+!p1@Gcm1!1.01!9.32!Gcm1;;chr17:87153440..87153451,+!p4@Epas1!1.00!18.64!Epas1;;chr5:77543897..77543911,-!p2@Hopx!1.00!17.37!Hopx;;chr11:57645586..57645597,-!p2@Hand1!1.00!9.11!Hand1;;chr2:172375136..172375149,+!p2@Tfap2c!1.00!8.90!Tfap2c;;chr6:52184901..52184959,-!p2@Hoxa10!0.99!8.69!Hoxa10;;chr16:17233653..17233683,+!p1@Hic2!0.98!56.35!Hic2;;chr2:91864661..91864686,-!p1@Creb3l1!0.97!184.93!Creb3l1;;chr1:193007123..193007139,-!p1@Atf3!0.97!47.87!Atf3;;chr2:38206744..38206766,+!p1@Lhx2!0.97!10.17!Lhx2;;chr2:24331116..24331125,-!p2@Pax8!0.97!8.26!Pax8;;chr10:12810631..12810649,+!p1@Plagl1!0.96!218.61!Plagl1;;chr9:24578720..24578735,-!p1@Tbx20!0.96!8.05!Tbx20;;chr10:5636374..5636421,-!p1@Esr1!0.94!9.74!Esr1;;chr2:24331085..24331100,-!p1@Pax8!0.93!7.41!Pax8;;chr8:24780125..24780143,+!p1@Zmat4!0.92!10.80!Zmat4;;chr17:87153028..87153049,+!p2@Epas1!0.91!151.46!Epas1;;chr16:95923651..95923701,+!p3@Ets2!0.91!11.65!Ets2;;chr15:79178013..79178028,+!p3@Maff!0.90!9.32!Maff;;chrX:55284180..55284195,+!p2@Zic3!0.90!6.99!Zic3;;chr18:36441119..36441158,+!p2@Pura!0.88!16.52!Pura;;chr2:172376528..172376543,+!p3@Tfap2c!0.88!6.57!Tfap2c;;chr2:167363692..167363710,+!p1@Snai1!0.87!83.25!Snai1;;chrX:133654667..133654672,-!p1@Esx1!0.87!6.35!Esx1;;chr8:94325321..94325366,-!p1@Irx3!0.86!15.89!Irx3;;chr19:5447886..5447905,+!p1@Fosl1!0.85!6.14!Fosl1;;chr17:34730333..34730362,+!p2@Pbx2!0.83!24.15!Pbx2;;chr6:145814003..145814056,-!p1@Bhlhe41!0.83!17.58!Bhlhe41;;chr4:107107175..107107204,+!p1@Glis1!0.83!6.99!Glis1;;chr5:148118614..148118625,-!p4@Cdx2!0.83!5.72!Cdx2;;chr2:167514456..167514473,+!p1@Cebpb!0.82!266.91!Cebpb;;chr16:50432467..50432522,-!p1@Bbx!0.82!117.14!Bbx;;chr7:6683123..6683142,-!p1@Peg3!0.81!304.40!Peg3;;chr7:6238191..6238224,+!p1@Zfp667!0.81!35.16!Zfp667;;chr2:9800094..9800108,-!p3@Gata3!0.81!5.51!Gata3;;chr5:125523411..125523420,-!p24@Ncor2!0.81!5.51!Ncor2;;chr15:79177964..79177986,+!p1@Maff!0.80!19.70!Maff;;chr2:104966766..104966786,+!p1@Wt1!0.80!8.69!Wt1;;chr13:5860776..5860796,+!p1@Klf6!0.79!135.36!Klf6;;chr5:145992626..145992652,+!p2@Zfp655!0.78!38.55!Zfp655;;chr19:41557591..41557634,+!p3@Lcor!0.78!13.77!Lcor;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.78!7.84!Ppp1r13l;;chr15:79178060..79178074,+!p2@Maff!0.78!6.78!Maff;;chr6:30908793..30908815,-!p1@Klf14!0.78!5.08!Klf14;;chr12:86940338..86940357,+!p1@Jdp2!0.77!52.53!Jdp2;;chr16:92697560..92697592,-!p2@Runx1!0.77!33.47!Runx1;;chr17:84105510..84105540,+!p2@Mta3!0.77!28.17!Mta3;;chr16:25801993..25802014,+!p1@Trp63!0.77!4.87!Trp63;;chr16:95924055..95924077,+!p1@Ets2!0.75!279.19!Ets2;;chrX:98449805..98449834,+!p3@Foxo4!0.75!13.77!Foxo4;;chr6:52195747..52195762,-!p3@Hoxa11!0.75!4.66!Hoxa11;;chr13:40825465..40825469,-!p2@Tfap2a!0.75!4.66!Tfap2a;;chr6:52184880..52184893,-!p6@Hoxa10!0.74!4.45!Hoxa10;;chr10:127080230..127080241,+!p6@Stat6!0.73!5.08!Stat6;;chr8:123608252..123608268,+!p1@Foxf1a!0.72!6.57!Foxf1a;;chr13:53568191..53568219,-!p2@Msx2!0.72!4.24!Msx2;;chr18:84581781..84581790,-!p8@Zfp407!0.72!4.24!Zfp407;;chr6:83661226..83661282,+!p1@Vax2!0.72!4.24!Vax2;;chr4:107107224..107107259,+!p2@Glis1!0.72!4.24!Glis1;;chr13:44825008..44825066,+!p5@Jarid2!0.71!8.69!Jarid2;;chr10:127095407..127095440,+!p3@Stat6!0.71!5.30!Stat6;;chr17:84105477..84105509,+!p3@Mta3!0.70!17.79!Mta3;;chr13:31650185..31650201,+!p1@Foxq1!0.70!15.46!Foxq1;;chr15:79178029..79178044,+!p4@Maff!0.70!5.08!Maff;;chr2:74536026..74536039,+!p1@Hoxd9!0.70!4.02!Hoxd9;;chr11:100553754..100553787,-!p1@Zfp385c!0.70!4.02!Zfp385c;;chr11:96829969..96829987,-!p2@Sp2!0.70!4.02!Sp2;;chr2:147871627..147871641,-!p1@Foxa2!0.70!4.02!Foxa2;;chr14:76904313..76904328,+!p1@Tsc22d1!0.69!861.73!Tsc22d1;;chr9:57684520..57684612,-!p1@Arid3b!0.69!39.19!Arid3b;;chr7:119822915..119822936,+!p5@Tead1!0.69!6.78!Tead1;;chr10:44178375..44178390,-!p2@Prdm1!0.69!5.51!Prdm1;;chr16:95923586..95923598,+!p5@Ets2!0.69!5.08!Ets2;;chr4:55545051..55545110,-!p2@Klf4!0.69!5.08!Klf4;;chr6:52664406..52664434,+!p3@Tax1bp1!0.69!4.87!Tax1bp1;;chr5:145992579..145992623,+!p1@Zfp655!0.68!133.24!Zfp655;;chr4:124334894..124334899,+!p1@Pou3f1!0.68!5.08!Pou3f1;;chr2:74529970..74529997,+!p1@Hoxd10!0.68!3.81!Hoxd10;;chr11:83664365..83664383,+!p1@Hnf1b!0.68!3.81!Hnf1b;;chr13:40826961..40827001,-!p4@Tfap2a!0.68!3.81!Tfap2a;;chrX:35419715..35419724,+!p1@Rhox10!0.68!3.81!Rhox10;;chr5:125523193..125523196,-!p23@Ncor2!0.68!3.81!Ncor2;;chr16:50429979..50429997,-!p4@Bbx!0.67!6.14!Bbx;;chr15:37162834..37162849,+!p2@Grhl2!0.67!4.45!Grhl2;;chr1:4483679..4483695,-!p1@Sox17!0.66!19.28!Sox17;;chr15:37162796..37162828,+!p1@Grhl2!0.66!6.35!Grhl2;;chr4:129118044..129118067,-!p1@Zbtb8b!0.66!4.66!Zbtb8b;;chr10:88969376..88969395,-!p1@Nr1h4!0.66!3.60!Nr1h4;;chr7:150155143..150155156,-!p1@Ascl2!0.66!3.60!Ascl2;;chr6:52664439..52664461,+!p4@Tax1bp1!0.66!3.60!Tax1bp1;;chr4:43575485..43575542,+!p1@Creb3!0.65!114.39!Creb3;;chr6:145813964..145813994,-!p3@Bhlhe41!0.65!4.66!Bhlhe41;;chr10:126727842..126727859,+!p1@Ddit3!0.64!113.54!Ddit3;;chr14:79881330..79881415,+!p3@Elf1!0.64!12.71!Elf1;;chr13:55932624..55932641,-!p2@Pitx1!0.64!3.39!Pitx1;;chr11:85699862..85699920,+!p1@Tbx4!0.64!3.39!Tbx4;;chr2:105003277..105003280,+!p5@Wt1!0.64!3.39!Wt1;;chr17:47922678..47922688,+!p10@Tfeb!0.64!3.39!Tfeb;;chr7:31065553..31065603,+!p@chr7:31065553..31065603,+!0.64!3.39!Thap8;;chr7:119822957..119822980,+!p2@Tead1!0.63!18.64!Tead1;;chr8:94325814..94325839,-!p2@Irx3!0.63!7.63!Irx3;;chr6:115311030..115311065,+!p4@Pparg!0.62!4.87!Pparg;;chr11:96880072..96880079,+!p1@Sp6!0.62!3.18!Sp6;;chr8:26958153..26958170,-!p5@Ash2l!0.62!3.18!Ash2l;;chr19:5447692..5447711,+!p2@Fosl1!0.62!3.18!Fosl1;;chr7:20408047..20408125,-!p1@Bcl3!0.61!42.37!Bcl3;;chr10:67599319..67599360,-!p2@Arid5b!0.61!40.46!Arid5b;;chr5:140267476..140267493,+!p1@Mafk!0.61!20.55!Mafk;;chr10:92773708..92773734,-!p3@Elk3!0.60!6.57!Elk3;;chr2:105003138..105003155,+!p13@Wt1!0.60!2.97!Wt1;;chrX:58146612..58146615,-!p1@Sox3!0.60!2.97!Sox3;;chr6:53523358..53523388,+!p1@Creb5!0.59!42.15!Creb5;;chr18:75527009..75527027,+!p1@Smad7!0.58!72.45!Smad7;;chr10:44178521..44178557,-!p1@Prdm1!0.58!5.51!Prdm1;;chr2:32219200..32219213,+!p5@Ciz1!0.58!3.81!Ciz1;;chr12:100631123..100631206,-!p3@Foxn3!0.57!18.85!Foxn3;;chr11:96690779..96690790,-!p3@Nfe2l1!0.57!7.63!Nfe2l1;;chr14:63864056..63864102,-!p1@Gata4!0.57!5.30!Gata4;;chr11:95170996..95171026,-!p3@Myst2!0.57!2.75!Myst2;;chr5:144951136..144951139,+!p2@Bhlha15!0.57!2.75!Bhlha15;;chr14:79880971..79880992,+!p2@Elf1!0.56!41.94!Elf1;;chr9:69137716..69137744,+!p1@Rora!0.56!20.55!Rora;;chr3:87945895..87945946,+!p2@Mef2d!0.56!10.17!Mef2d;;chr11:53164533..53164548,+!p4@Aff4!0.56!9.11!Aff4;;chr9:96653072..96653154,-!p1@Zbtb38!0.56!8.26!Zbtb38;;chr8:94325847..94325869,-!p3@Irx3!0.56!4.66!Irx3;;chr19:59533221..59533271,+!p1@Emx2!0.56!3.39!Emx2;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.55!97.87!Zfp706;;chr11:96690797..96690813,-!p1@Nfe2l1!0.55!62.07!Nfe2l1;;chr7:71083428..71083518,-!p3@Klf13!0.55!24.15!Klf13;;chr7:17647736..17647772,-!p1@Hif3a!0.55!11.02!Hif3a;;chr17:71202822..71202877,-!p3@Tgif1!0.55!8.90!Tgif1;;chr15:82742573..82742620,-!p2@Tcf20!0.55!2.54!Tcf20;;chr15:102828658..102828678,+!p1@Hoxc6!0.55!2.54!Hoxc6;;chr11:69468531..69468557,+!p1@Sox15!0.55!2.54!Sox15;;chr2:72817045..72817123,-!p1@Sp3!0.54!102.74!Sp3;;chr13:5860749..5860772,+!p2@Klf6!0.54!30.72!Klf6;;chr7:119822940..119822945,+!p6@Tead1!0.54!3.39!Tead1;;chr6:37392095..37392154,-!p1@Creb3l2!0.53!96.60!Creb3l2;;chr8:125778192..125778217,+!p2@Zfp276!0.52!7.84!Zfp276;;chr11:95170871..95170900,-!p2@Myst2!0.52!7.41!Myst2;;c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0..110031342,+!p4@Yy1!0.12!4.02!Yy1;;chr13:58503894..58503895,-!p4@Hnrnpk!0.12!3.18!Hnrnpk;;chr6:48552000..48552042,+!p@chr6:48552000..48552042,+!0.12!2.75!Zfp775;;chr6:99216488..99216534,-!p2@Foxp1!0.12!2.54!Foxp1;;chr18:74427866..74427881,+!p3@Mbd1!0.12!2.33!Mbd1;;chr1:15795704..15795713,+!p2@Terf1!0.12!2.12!Terf1;;chr12:3807001..3807016,+!p5@Dnmt3a!0.12!2.12!Dnmt3a;;chr16:55973899..55973913,+!p7@Rpl24,p7@Zbtb11!0.12!1.91!Zbtb11;;chr9:63869729..63869749,-!p4@Smad6!0.12!1.48!Smad6;;chr7:87171256..87171280,+!p4@Zfp710!0.12!1.48!Zfp710;;chr4:87452180..87452196,-!p3@Mllt3!0.12!1.48!Mllt3;;chr5:120121169..120121171,+!p4@Tbx3!0.12!1.27!Tbx3;;chr18:69505476..69505494,+!p15@Tcf4!0.12!1.06!Tcf4;;chrX:137077682..137077692,-!p5@Tsc22d3!0.12!1.06!Tsc22d3;;chr5:125659510..125659517,-!p3@Ncor2!0.12!0.85!Ncor2;;chr2:173044357..173044377,-!p2@Zbp1!0.12!0.85!Zbp1;;chr8:111227455..111227464,+!p@chr8:111227455..111227464,+!0.12!0.64!Zfhx3;;chr19:55817261..55817274,+!p15@Tcf7l2!0.12!0.64!Tcf7l2;;chr17:71202982..71202985,-!p7@Tgif1!0.12!0.64!Tgif1;;chr17:71200967..71200983,-!p8@Tgif1!0.12!0.64!Tgif1;;chr19:53403997..53404008,+!p7@Mxi1!0.12!0.42!Mxi1;;chr2:27532912..27532923,+!p9@Rxra!0.12!0.42!Rxra;;chr17:34729193..34729274,+!p1@Pbx2!0.11!55.08!Pbx2;;chr1:136456767..136456790,+!p2@Kdm5b!0.11!23.73!Kdm5b;;chr3:51081233..51081365,-!p1@Elf2!0.11!23.73!Elf2;;chr5:72950853..72950930,-!p1@Nfxl1!0.11!19.70!Nfxl1;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.11!13.98!Zzz3;;chr19:5637708..5637730,+!p3@Rela!0.11!11.02!Rela;;chr17:47873985..47874056,+!p1@Tfeb!0.11!8.90!Tfeb;;chr3:54611674..54611690,-!p2@Rfxap!0.11!7.84!Rfxap;;chr1:194979315..194979359,+!p1@Irf6!0.11!6.35!Irf6;;chr5:65194720..65194738,+!p2@Klf3!0.11!5.51!Klf3;;chr13:56804721..56804792,+!p2@Smad5!0.11!5.30!Smad5;;chr13:67209482..67209545,-!p1@Zfp708!0.11!4.66!Zfp708;;chr5:107125838..107125858,-!p2@Zfp644!0.11!3.18!Zfp644;;chr13:42147211..42147244,+!p2@Hivep1!0.11!2.97!Hivep1;;chr4:151401710..151401733,-!p2@Zbtb48!0.11!2.75!Zbtb48;;chr1:162836606..162836631,+!p2@Rc3h1!0.11!2.33!Rc3h1;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.11!2.33!Zfp82;;chr19:5637489..5637500,+!p5@Rela!0.11!2.12!Rela;;chr17:71200558..71200572,-!p4@Tgif1!0.11!2.12!Tgif1;;chr1:95651346..95651383,-!p3@Thap4!0.11!1.91!Thap4;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.11!1.48!D630045J12Rik;;chr17:4994491..4994531,+!p6@Arid1b!0.11!1.48!Arid1b;;chr7:74517748..74517757,-!p3@Mef2a!0.11!1.48!Mef2a;;chr4:108151497..108151514,+!p3@Zcchc11!0.11!1.48!Zcchc11;;chr5:3648045..3648074,-!p2@Gatad1!0.11!1.06!Gatad1;;chr14:52640315..52640328,-!p10@Zfp219!0.11!0.64!Zfp219;;chrX:48559029..48559051,-!p7@Mbnl3!0.11!0.64!Mbnl3;;chr7:30553662..30553669,+!p2@Zfp84!0.11!0.64!Zfp84;;chr16:3744192..3744206,+!p4@Zfp263!0.11!0.64!Zfp263;;chr16:98073382..98073395,-!p4@Prdm15!0.11!0.64!Prdm15;;chr19:19185697..19185711,-!p2@Rorb!0.11!0.64!Rorb;;chr9:96159225..96159249,+!p5@Tfdp2!0.11!0.42!Tfdp2;;chr2:74550178..74550214,+!p5@Hoxd3!0.11!0.42!Hoxd3;;chr14:32973087..32973175,+!p1@Gm6768,p1@Ncoa4!0.10!76.47!Ncoa4;;chr17:34168732..34168766,+!p1@Rxrb!0.10!30.08!Rxrb;;chr18:76401546..76401613,+!p1@Smad2!0.10!23.73!Smad2;;chr5:53981692..53981768,+!p2@Rbpj!0.10!20.12!Rbpj;;chr1:135320989..135321043,-!p1@Sox13!0.10!11.86!Sox13;;chr18:39649430..39649522,-!p2@Nr3c1!0.10!10.59!Nr3c1;;chr10:75495343..75495405,+!p1@Zfp280b!0.10!8.90!Zfp280b;;chr7:71083876..71083932,-!p2@Klf13!0.10!8.26!Klf13;;chr14:14845141..14845207,+!p1@Atxn7!0.10!7.41!Atxn7;;chr4:133801494..133801519,-!p2@Zfp593!0.10!7.20!Zfp593;;chr2:48805015..48805042,+!p2@Mbd5!0.10!6.14!Mbd5;;chr19:55816398..55816409,+!p5@Tcf7l2!0.10!4.66!Tcf7l2;;chr10:41996550..41996569,-!p2@Foxo3!0.10!4.45!Foxo3;;chr18:5334362..5334408,-!p1@Zfp438!0.10!4.02!Zfp438;; | |expression_enrichment_score=chr11:57645506..57645523,-!p1@Hand1!2.45!280.04!Hand1;;chrX:98449898..98449913,+!p2@Foxo4!2.40!764.08!Foxo4;;chr8:26958093..26958148,-!p2@Ash2l!1.98!95.32!Ash2l;;chr6:115311270..115311298,+!p1@Pparg!1.91!113.75!Pparg;;chrX:35464090..35464097,-!p1@Rhox12!1.91!81.13!Rhox12;;chr2:172375081..172375105,+!p1@Tfap2c!1.83!67.15!Tfap2c;;chrX:48499591..48499593,-!p3@Mbnl3!1.80!61.85!Mbnl3;;chr11:94981424..94981439,+!p1@Dlx3!1.73!58.89!Dlx3;;chr6:128250380..128250442,-!p2@Tead4!1.69!59.95!Tead4;;chr5:148118639..148118715,-!p1@Cdx2!1.69!48.09!Cdx2;;chrX:133654344..133654358,-!p2@Esx1!1.59!38.34!Esx1;;chr5:125523164..125523188,-!p8@Ncor2!1.56!34.95!Ncor2;;chrX:137135036..137135064,-!p4@Tsc22d3!1.55!66.52!Tsc22d3;;chr9:119893782..119893802,-!p1@Csrnp1!1.50!30.29!Csrnp1;;chrX:133654245..133654253,-!p3@Esx1!1.42!25.21!Esx1;;chr8:59799772..59799789,+!p1@Hand2!1.39!66.30!Hand2;;chr5:144951153..144951203,+!p1@Bhlha15!1.38!33.26!Bhlha15;;chr6:128250471..128250519,-!p1@Tead4!1.35!42.15!Tead4;;chr1:137155026..137155042,-!p1@Elf3!1.34!117.99!Elf3;;chr7:6649134..6649167,-!p1@Zim1!1.34!109.31!Zim1;;chr2:9800207..9800234,-!p1@Gata3!1.31!57.62!Gata3;;chr17:87153505..87153516,+!p6@Epas1!1.30!26.06!Epas1;;chr17:87153519..87153533,+!p5@Epas1!1.28!26.48!Epas1;;chr17:87153462..87153473,+!p3@Epas1!1.24!60.58!Epas1;;chr6:52190668..52190682,-!p3@Hoxa10!1.24!16.52!Hoxa10;;chr3:127336052..127336058,+!p1@Neurog2!1.24!16.52!Neurog2;;chr6:128250521..128250543,-!p3@Tead4!1.23!25.21!Tead4;;chr6:52195795..52195825,-!p1@Hoxa11!1.23!15.89!Hoxa11;;chr12:3891810..3891829,+!p2@Dnmt3a!1.22!24.36!Dnmt3a;;chr6:52195763..52195792,-!p2@Hoxa11!1.22!15.68!Hoxa11;;chr6:88148650..88148669,+!p1@Gata2!1.21!124.35!Gata2;;chr13:53568104..53568156,-!p1@Msx2!1.19!21.40!Msx2;;chrX:48559194..48559210,-!p4@Mbnl3!1.18!17.79!Mbnl3;;chr6:145813905..145813932,-!p2@Bhlhe41!1.15!25.21!Bhlhe41;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.11!46.81!Ppp1r13l;;chr13:40829137..40829205,-!p1@Tfap2a!1.10!12.92!Tfap2a;;chr17:87153240..87153254,+!p1@Epas1!1.08!217.55!Epas1;;chr13:55932591..55932622,-!p1@Pitx1!1.07!12.92!Pitx1;;chr4:43575544..43575565,+!p2@Creb3!1.06!61.64!Creb3;;chr10:79390075..79390115,+!p2@Arid3a!1.06!35.80!Arid3a;;chr9:8900459..8900489,+!p1@Pgr!1.05!10.17!Pgr;;chr10:5636354..5636373,-!p2@Esr1!1.03!9.74!Esr1;;chr6:52190467..52190500,-!p1@Hoxa10!1.02!9.53!Hoxa10;;chr7:148452314..148452329,-!p1@Irf7!1.01!66.09!Irf7;;chr6:115311308..115311317,+!p10@Pparg!1.01!9.32!Pparg;;chr9:77899745..77899755,+!p1@Gcm1!1.01!9.32!Gcm1;;chr17:87153440..87153451,+!p4@Epas1!1.00!18.64!Epas1;;chr5:77543897..77543911,-!p2@Hopx!1.00!17.37!Hopx;;chr11:57645586..57645597,-!p2@Hand1!1.00!9.11!Hand1;;chr2:172375136..172375149,+!p2@Tfap2c!1.00!8.90!Tfap2c;;chr6:52184901..52184959,-!p2@Hoxa10!0.99!8.69!Hoxa10;;chr16:17233653..17233683,+!p1@Hic2!0.98!56.35!Hic2;;chr2:91864661..91864686,-!p1@Creb3l1!0.97!184.93!Creb3l1;;chr1:193007123..193007139,-!p1@Atf3!0.97!47.87!Atf3;;chr2:38206744..38206766,+!p1@Lhx2!0.97!10.17!Lhx2;;chr2:24331116..24331125,-!p2@Pax8!0.97!8.26!Pax8;;chr10:12810631..12810649,+!p1@Plagl1!0.96!218.61!Plagl1;;chr9:24578720..24578735,-!p1@Tbx20!0.96!8.05!Tbx20;;chr10:5636374..5636421,-!p1@Esr1!0.94!9.74!Esr1;;chr2:24331085..24331100,-!p1@Pax8!0.93!7.41!Pax8;;chr8:24780125..24780143,+!p1@Zmat4!0.92!10.80!Zmat4;;chr17:87153028..87153049,+!p2@Epas1!0.91!151.46!Epas1;;chr16:95923651..95923701,+!p3@Ets2!0.91!11.65!Ets2;;chr15:79178013..79178028,+!p3@Maff!0.90!9.32!Maff;;chrX:55284180..55284195,+!p2@Zic3!0.90!6.99!Zic3;;chr18:36441119..36441158,+!p2@Pura!0.88!16.52!Pura;;chr2:172376528..172376543,+!p3@Tfap2c!0.88!6.57!Tfap2c;;chr2:167363692..167363710,+!p1@Snai1!0.87!83.25!Snai1;;chrX:133654667..133654672,-!p1@Esx1!0.87!6.35!Esx1;;chr8:94325321..94325366,-!p1@Irx3!0.86!15.89!Irx3;;chr19:5447886..5447905,+!p1@Fosl1!0.85!6.14!Fosl1;;chr17:34730333..34730362,+!p2@Pbx2!0.83!24.15!Pbx2;;chr6:145814003..145814056,-!p1@Bhlhe41!0.83!17.58!Bhlhe41;;chr4:107107175..107107204,+!p1@Glis1!0.83!6.99!Glis1;;chr5:148118614..148118625,-!p4@Cdx2!0.83!5.72!Cdx2;;chr2:167514456..167514473,+!p1@Cebpb!0.82!266.91!Cebpb;;chr16:50432467..50432522,-!p1@Bbx!0.82!117.14!Bbx;;chr7:6683123..6683142,-!p1@Peg3!0.81!304.40!Peg3;;chr7:6238191..6238224,+!p1@Zfp667!0.81!35.16!Zfp667;;chr2:9800094..9800108,-!p3@Gata3!0.81!5.51!Gata3;;chr5:125523411..125523420,-!p24@Ncor2!0.81!5.51!Ncor2;;chr15:79177964..79177986,+!p1@Maff!0.80!19.70!Maff;;chr2:104966766..104966786,+!p1@Wt1!0.80!8.69!Wt1;;chr13:5860776..5860796,+!p1@Klf6!0.79!135.36!Klf6;;chr5:145992626..145992652,+!p2@Zfp655!0.78!38.55!Zfp655;;chr19:41557591..41557634,+!p3@Lcor!0.78!13.77!Lcor;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.78!7.84!Ppp1r13l;;chr15:79178060..79178074,+!p2@Maff!0.78!6.78!Maff;;chr6:30908793..30908815,-!p1@Klf14!0.78!5.08!Klf14;;chr12:86940338..86940357,+!p1@Jdp2!0.77!52.53!Jdp2;;chr16:92697560..92697592,-!p2@Runx1!0.77!33.47!Runx1;;chr17:84105510..84105540,+!p2@Mta3!0.77!28.17!Mta3;;chr16:25801993..25802014,+!p1@Trp63!0.77!4.87!Trp63;;chr16:95924055..95924077,+!p1@Ets2!0.75!279.19!Ets2;;chrX:98449805..98449834,+!p3@Foxo4!0.75!13.77!Foxo4;;chr6:52195747..52195762,-!p3@Hoxa11!0.75!4.66!Hoxa11;;chr13:40825465..40825469,-!p2@Tfap2a!0.75!4.66!Tfap2a;;chr6:52184880..52184893,-!p6@Hoxa10!0.74!4.45!Hoxa10;;chr10:127080230..127080241,+!p6@Stat6!0.73!5.08!Stat6;;chr8:123608252..123608268,+!p1@Foxf1a!0.72!6.57!Foxf1a;;chr13:53568191..53568219,-!p2@Msx2!0.72!4.24!Msx2;;chr18:84581781..84581790,-!p8@Zfp407!0.72!4.24!Zfp407;;chr6:83661226..83661282,+!p1@Vax2!0.72!4.24!Vax2;;chr4:107107224..107107259,+!p2@Glis1!0.72!4.24!Glis1;;chr13:44825008..44825066,+!p5@Jarid2!0.71!8.69!Jarid2;;chr10:127095407..127095440,+!p3@Stat6!0.71!5.30!Stat6;;chr17:84105477..84105509,+!p3@Mta3!0.70!17.79!Mta3;;chr13:31650185..31650201,+!p1@Foxq1!0.70!15.46!Foxq1;;chr15:79178029..79178044,+!p4@Maff!0.70!5.08!Maff;;chr2:74536026..74536039,+!p1@Hoxd9!0.70!4.02!Hoxd9;;chr11:100553754..100553787,-!p1@Zfp385c!0.70!4.02!Zfp385c;;chr11:96829969..96829987,-!p2@Sp2!0.70!4.02!Sp2;;chr2:147871627..147871641,-!p1@Foxa2!0.70!4.02!Foxa2;;chr14:76904313..76904328,+!p1@Tsc22d1!0.69!861.73!Tsc22d1;;chr9:57684520..57684612,-!p1@Arid3b!0.69!39.19!Arid3b;;chr7:119822915..119822936,+!p5@Tead1!0.69!6.78!Tead1;;chr10:44178375..44178390,-!p2@Prdm1!0.69!5.51!Prdm1;;chr16:95923586..95923598,+!p5@Ets2!0.69!5.08!Ets2;;chr4:55545051..55545110,-!p2@Klf4!0.69!5.08!Klf4;;chr6:52664406..52664434,+!p3@Tax1bp1!0.69!4.87!Tax1bp1;;chr5:145992579..145992623,+!p1@Zfp655!0.68!133.24!Zfp655;;chr4:124334894..124334899,+!p1@Pou3f1!0.68!5.08!Pou3f1;;chr2:74529970..74529997,+!p1@Hoxd10!0.68!3.81!Hoxd10;;chr11:83664365..83664383,+!p1@Hnf1b!0.68!3.81!Hnf1b;;chr13:40826961..40827001,-!p4@Tfap2a!0.68!3.81!Tfap2a;;chrX:35419715..35419724,+!p1@Rhox10!0.68!3.81!Rhox10;;chr5:125523193..125523196,-!p23@Ncor2!0.68!3.81!Ncor2;;chr16:50429979..50429997,-!p4@Bbx!0.67!6.14!Bbx;;chr15:37162834..37162849,+!p2@Grhl2!0.67!4.45!Grhl2;;chr1:4483679..4483695,-!p1@Sox17!0.66!19.28!Sox17;;chr15:37162796..37162828,+!p1@Grhl2!0.66!6.35!Grhl2;;chr4:129118044..129118067,-!p1@Zbtb8b!0.66!4.66!Zbtb8b;;chr10:88969376..88969395,-!p1@Nr1h4!0.66!3.60!Nr1h4;;chr7:150155143..150155156,-!p1@Ascl2!0.66!3.60!Ascl2;;chr6:52664439..52664461,+!p4@Tax1bp1!0.66!3.60!Tax1bp1;;chr4:43575485..43575542,+!p1@Creb3!0.65!114.39!Creb3;;chr6:145813964..145813994,-!p3@Bhlhe41!0.65!4.66!Bhlhe41;;chr10:126727842..126727859,+!p1@Ddit3!0.64!113.54!Ddit3;;chr14:79881330..79881415,+!p3@Elf1!0.64!12.71!Elf1;;chr13:55932624..55932641,-!p2@Pitx1!0.64!3.39!Pitx1;;chr11:85699862..85699920,+!p1@Tbx4!0.64!3.39!Tbx4;;chr2:105003277..105003280,+!p5@Wt1!0.64!3.39!Wt1;;chr17:47922678..47922688,+!p10@Tfeb!0.64!3.39!Tfeb;;chr7:31065553..31065603,+!p@chr7:31065553..31065603,+!0.64!3.39!Thap8;;chr7:119822957..119822980,+!p2@Tead1!0.63!18.64!Tead1;;chr8:94325814..94325839,-!p2@Irx3!0.63!7.63!Irx3;;chr6:115311030..115311065,+!p4@Pparg!0.62!4.87!Pparg;;chr11:96880072..96880079,+!p1@Sp6!0.62!3.18!Sp6;;chr8:26958153..26958170,-!p5@Ash2l!0.62!3.18!Ash2l;;chr19:5447692..5447711,+!p2@Fosl1!0.62!3.18!Fosl1;;chr7:20408047..20408125,-!p1@Bcl3!0.61!42.37!Bcl3;;chr10:67599319..67599360,-!p2@Arid5b!0.61!40.46!Arid5b;;chr5:140267476..140267493,+!p1@Mafk!0.61!20.55!Mafk;;chr10:92773708..92773734,-!p3@Elk3!0.60!6.57!Elk3;;chr2:105003138..105003155,+!p13@Wt1!0.60!2.97!Wt1;;chrX:58146612..58146615,-!p1@Sox3!0.60!2.97!Sox3;;chr6:53523358..53523388,+!p1@Creb5!0.59!42.15!Creb5;;chr18:75527009..75527027,+!p1@Smad7!0.58!72.45!Smad7;;chr10:44178521..44178557,-!p1@Prdm1!0.58!5.51!Prdm1;;chr2:32219200..32219213,+!p5@Ciz1!0.58!3.81!Ciz1;;chr12:100631123..100631206,-!p3@Foxn3!0.57!18.85!Foxn3;;chr11:96690779..96690790,-!p3@Nfe2l1!0.57!7.63!Nfe2l1;;chr14:63864056..63864102,-!p1@Gata4!0.57!5.30!Gata4;;chr11:95170996..95171026,-!p3@Myst2!0.57!2.75!Myst2;;chr5:144951136..144951139,+!p2@Bhlha15!0.57!2.75!Bhlha15;;chr14:79880971..79880992,+!p2@Elf1!0.56!41.94!Elf1;;chr9:69137716..69137744,+!p1@Rora!0.56!20.55!Rora;;chr3:87945895..87945946,+!p2@Mef2d!0.56!10.17!Mef2d;;chr11:53164533..53164548,+!p4@Aff4!0.56!9.11!Aff4;;chr9:96653072..96653154,-!p1@Zbtb38!0.56!8.26!Zbtb38;;chr8:94325847..94325869,-!p3@Irx3!0.56!4.66!Irx3;;chr19:59533221..59533271,+!p1@Emx2!0.56!3.39!Emx2;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.55!97.87!Zfp706;;chr11:96690797..96690813,-!p1@Nfe2l1!0.55!62.07!Nfe2l1;;chr7:71083428..71083518,-!p3@Klf13!0.55!24.15!Klf13;;chr7:17647736..17647772,-!p1@Hif3a!0.55!11.02!Hif3a;;chr17:71202822..71202877,-!p3@Tgif1!0.55!8.90!Tgif1;;chr15:82742573..82742620,-!p2@Tcf20!0.55!2.54!Tcf20;;chr15:102828658..102828678,+!p1@Hoxc6!0.55!2.54!Hoxc6;;chr11:69468531..69468557,+!p1@Sox15!0.55!2.54!Sox15;;chr2:72817045..72817123,-!p1@Sp3!0.54!102.74!Sp3;;chr13:5860749..5860772,+!p2@Klf6!0.54!30.72!Klf6;;chr7:119822940..119822945,+!p6@Tead1!0.54!3.39!Tead1;;chr6:37392095..37392154,-!p1@Creb3l2!0.53!96.60!Creb3l2;;chr8:125778192..125778217,+!p2@Zfp276!0.52!7.84!Zfp276;;chr11:95170871..95170900,-!p2@Myst2!0.52!7.41!Myst2;;c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| ||
| Line 45: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10464 | |library_id=CNhs10464 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs10464 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;577 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;577 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/placenta%252c%2520adult%2520pregnant%2520day17.CNhs10464.577-18G3.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/placenta%252c%2520adult%2520pregnant%2520day17.CNhs10464.577-18G3.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/placenta%252c%2520adult%2520pregnant%2520day17.CNhs10464.577-18G3.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/placenta%252c%2520adult%2520pregnant%2520day17.CNhs10464.577-18G3.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/placenta%252c%2520adult%2520pregnant%2520day17.CNhs10464.577-18G3.mm9.nobarcode.rdna.fa.gz | |||
|name=placenta, adult pregnant day17 | |name=placenta, adult pregnant day17 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10464,LSID646,release008,COMPLETED | |profile_hcage=CNhs10464,LSID646,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0.0123291635764751,0,0,0,-0.00392500877943558,0,0.0448550198638651,0,0,1.53328927733785,0,0,0.266544079535733,0,0,0,-0.108450909063967,0,0,0,0,0,0,0,0,0,0,0,0,0.0360693504677301,0.0624916975348053,0,0,0,0.153407546465022,0,0.0990653624990877,0,0.19576472698848,0.220995083143744,-0.186426196191743,0,0,0,0,0,0,0,0,0,0,0,0,0.087401998901582,2.52539599993395,0,0,0,0,0,0,0,0,0,0.0392280514125778,-0.0441065778036531,-0.0746486009524746,-0.0089486284138055,0,0.135640941990593,0.00155139993234354,0.171908717940459,0,0,0,-0.0703088570909237,-0.0734507223776035,-0.0788315948399074,0,0,0,0,0,0,-0.00396614092322711,4.88989793101524e-06,0.0385850857635145,0,0,0.083442441818608,0,0 | |repeat_enrich_byfamily=-0.11779559634038,0,0.0123291635764751,0,0,0,-0.00392500877943558,0,0.0448550198638651,0,0,1.53328927733785,0,0,0.266544079535733,0,0,0,-0.108450909063967,0,0,0,0,0,0,0,0,0,0,0,0,0.0360693504677301,0.0624916975348053,0,0,0,0.153407546465022,0,0.0990653624990877,0,0.19576472698848,0.220995083143744,-0.186426196191743,0,0,0,0,0,0,0,0,0,0,0,0,0.087401998901582,2.52539599993395,0,0,0,0,0,0,0,0,0,0.0392280514125778,-0.0441065778036531,-0.0746486009524746,-0.0089486284138055,0,0.135640941990593,0.00155139993234354,0.171908717940459,0,0,0,-0.0703088570909237,-0.0734507223776035,-0.0788315948399074,0,0,0,0,0,0,-0.00396614092322711,4.88989793101524e-06,0.0385850857635145,0,0,0.083442441818608,0,0 | ||
| Line 88: | Line 97: | ||
|top_motifs=BACH2:2.0706562031;NANOG{mouse}:2.00380492106;HIF1A:1.96782130006;SREBF1,2:1.94978140942;XCPE1{core}:1.88155687584;SP1:1.82199729501;PAX2:1.7898267939;FOSL2:1.76542663014;ATF6:1.56803110277;FOS_FOS{B,L1}_JUN{B,D}:1.56315655972;FOXO1,3,4:1.32937251527;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.31624608688;PAX1,9:1.19329740747;ZNF148:1.17412804671;TEAD1:1.06126445072;HAND1,2:1.00396053927;RXRA_VDR{dimer}:0.979566286883;GZF1:0.976733420724;FOX{F1,F2,J1}:0.898710956231;ALX4:0.892871707698;NFE2:0.892260880754;FOX{D1,D2}:0.86822035269;SPZ1:0.707942714515;ATF2:0.703109785829;CEBPA,B_DDIT3:0.673012584028;NFE2L2:0.667408724894;STAT2,4,6:0.627065456182;ATF4:0.624091522266;GFI1B:0.623860354715;IRF1,2:0.598831457126;IKZF2:0.590596862988;TBX4,5:0.587070627815;EBF1:0.557111183229;TFCP2:0.554077269719;ZEB1:0.541342099927;NFE2L1:0.511651572946;ELK1,4_GABP{A,B1}:0.496529099104;FOXP3:0.486382130664;NFATC1..3:0.485263199336;TFAP2{A,C}:0.479723937474;ELF1,2,4:0.473534413314;MAZ:0.460815293114;SNAI1..3:0.460123876697;TP53:0.422511172017;FOXM1:0.406191162957;ZNF143:0.39355920707;CREB1:0.386743131437;EN1,2:0.380402914769;TBP:0.349448237661;HLF:0.340818483055;HOXA9_MEIS1:0.336943327893;IKZF1:0.329980648712;GCM1,2:0.281686291758;FOXN1:0.266511796566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266249942224;GLI1..3:0.264322559052;MAFB:0.259327353907;SRF:0.257430403161;SMAD1..7,9:0.239656829839;ETS1,2:0.228549360671;NKX3-2:0.219246368141;SOX5:0.212137271709;EP300:0.202994458535;MTE{core}:0.198658149379;FOXA2:0.163276671909;ESR1:0.156325031061;PITX1..3:0.121092838048;HNF1A:0.117271322653;SPIB:0.114630717079;ALX1:0.110704990594;HNF4A_NR2F1,2:0.0819663373838;EVI1:0.074798945315;TFAP2B:0.0729662535546;ZIC1..3:0.072848358834;FOXP1:-0.00133123625334;BPTF:-0.012986271532;FOX{I1,J2}:-0.0253878354379;PAX4:-0.0278830612608;HMX1:-0.0311172886559;SPI1:-0.0508121475136;NHLH1,2:-0.0531481992667;GTF2A1,2:-0.0762411255213;EGR1..3:-0.0939503612171;NFKB1_REL_RELA:-0.0945541526911;PATZ1:-0.152051167764;AIRE:-0.163372791191;PAX5:-0.181921786365;POU3F1..4:-0.214947195187;RREB1:-0.225899211603;ZNF238:-0.23744164095;ZNF423:-0.241054639412;STAT1,3:-0.249280255972;AR:-0.270653596713;HMGA1,2:-0.280488927752;CDC5L:-0.281101574867;JUN:-0.300849283597;LEF1_TCF7_TCF7L1,2:-0.325574089749;ESRRA:-0.328440137065;ATF5_CREB3:-0.339011628254;GATA6:-0.34494366036;TOPORS:-0.345264155513;REST:-0.375599788782;RXR{A,B,G}:-0.380137203177;ZBTB16:-0.383004501826;TGIF1:-0.384206502395;ZBTB6:-0.394124269753;GTF2I:-0.403938534389;TFDP1:-0.413206169769;bHLH_family:-0.41556033661;MYFfamily:-0.452226718832;NRF1:-0.472299717372;NKX3-1:-0.475140689864;UFEwm:-0.476209846746;NKX2-3_NKX2-5:-0.47774964235;ARID5B:-0.479165954848;GATA4:-0.483908439527;VSX1,2:-0.51083224374;MEF2{A,B,C,D}:-0.518878446488;MTF1:-0.523638993982;PDX1:-0.565597553928;RUNX1..3:-0.566675904306;MED-1{core}:-0.568099623585;CDX1,2,4:-0.608495697935;ZFP161:-0.617106126344;RFX2..5_RFXANK_RFXAP:-0.625755259385;NFIL3:-0.643339222658;PRRX1,2:-0.644365173611;MYB:-0.647644018215;TLX1..3_NFIC{dimer}:-0.650509542524;MYBL2:-0.659180464886;T:-0.664920957622;RFX1:-0.676449453256;NANOG:-0.677047994968;FOXD3:-0.696624962224;SOX2:-0.713332992053;FOXQ1:-0.721292577549;PPARG:-0.749095826268;CRX:-0.764588890289;MZF1:-0.791088965208;MYOD1:-0.791293459819;TFAP4:-0.792909378693;ONECUT1,2:-0.821109537267;BREu{core}:-0.825524040594;HBP1_HMGB_SSRP1_UBTF:-0.826356014064;NKX2-2,8:-0.828710661743;NKX6-1,2:-0.848723960468;KLF4:-0.863266692991;NFY{A,B,C}:-0.864512418714;PAX6:-0.876062264844;FOXL1:-0.885730570872;HIC1:-0.888652658539;LHX3,4:-0.89555803256;TAL1_TCF{3,4,12}:-0.90136634535;HSF1,2:-0.913952811958;PAX8:-0.927812525993;CUX2:-0.939039629815;IRF7:-0.957319648237;AHR_ARNT_ARNT2:-0.991148024315;RORA:-1.01672161556;SOX17:-1.02226848774;E2F1..5:-1.03214211077;DBP:-1.05326115048;POU2F1..3:-1.07619740074;NKX2-1,4:-1.10606807861;PRDM1:-1.12977048244;GFI1:-1.14138056771;HES1:-1.19820769011;DMAP1_NCOR{1,2}_SMARC:-1.22106593311;ZNF384:-1.24114105911;OCT4_SOX2{dimer}:-1.25188112757;HOX{A4,D4}:-1.27239957524;NFIX:-1.2799205104;TEF:-1.31382840572;POU6F1:-1.32180614087;NR5A1,2:-1.32504506072;LMO2:-1.36641717928;NR6A1:-1.39112718715;ADNP_IRX_SIX_ZHX:-1.44071904349;NR1H4:-1.51281125329;POU5F1:-1.566776516;STAT5{A,B}:-1.63627561255;SOX{8,9,10}:-1.66645106399;HOX{A5,B5}:-1.82535038475;TLX2:-2.02901972663;POU1F1:-2.06865965466;YY1:-2.07499543413;PBX1:-2.12847034827;RBPJ:-2.17181093905;NR3C1:-2.46818383943 | |top_motifs=BACH2:2.0706562031;NANOG{mouse}:2.00380492106;HIF1A:1.96782130006;SREBF1,2:1.94978140942;XCPE1{core}:1.88155687584;SP1:1.82199729501;PAX2:1.7898267939;FOSL2:1.76542663014;ATF6:1.56803110277;FOS_FOS{B,L1}_JUN{B,D}:1.56315655972;FOXO1,3,4:1.32937251527;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.31624608688;PAX1,9:1.19329740747;ZNF148:1.17412804671;TEAD1:1.06126445072;HAND1,2:1.00396053927;RXRA_VDR{dimer}:0.979566286883;GZF1:0.976733420724;FOX{F1,F2,J1}:0.898710956231;ALX4:0.892871707698;NFE2:0.892260880754;FOX{D1,D2}:0.86822035269;SPZ1:0.707942714515;ATF2:0.703109785829;CEBPA,B_DDIT3:0.673012584028;NFE2L2:0.667408724894;STAT2,4,6:0.627065456182;ATF4:0.624091522266;GFI1B:0.623860354715;IRF1,2:0.598831457126;IKZF2:0.590596862988;TBX4,5:0.587070627815;EBF1:0.557111183229;TFCP2:0.554077269719;ZEB1:0.541342099927;NFE2L1:0.511651572946;ELK1,4_GABP{A,B1}:0.496529099104;FOXP3:0.486382130664;NFATC1..3:0.485263199336;TFAP2{A,C}:0.479723937474;ELF1,2,4:0.473534413314;MAZ:0.460815293114;SNAI1..3:0.460123876697;TP53:0.422511172017;FOXM1:0.406191162957;ZNF143:0.39355920707;CREB1:0.386743131437;EN1,2:0.380402914769;TBP:0.349448237661;HLF:0.340818483055;HOXA9_MEIS1:0.336943327893;IKZF1:0.329980648712;GCM1,2:0.281686291758;FOXN1:0.266511796566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266249942224;GLI1..3:0.264322559052;MAFB:0.259327353907;SRF:0.257430403161;SMAD1..7,9:0.239656829839;ETS1,2:0.228549360671;NKX3-2:0.219246368141;SOX5:0.212137271709;EP300:0.202994458535;MTE{core}:0.198658149379;FOXA2:0.163276671909;ESR1:0.156325031061;PITX1..3:0.121092838048;HNF1A:0.117271322653;SPIB:0.114630717079;ALX1:0.110704990594;HNF4A_NR2F1,2:0.0819663373838;EVI1:0.074798945315;TFAP2B:0.0729662535546;ZIC1..3:0.072848358834;FOXP1:-0.00133123625334;BPTF:-0.012986271532;FOX{I1,J2}:-0.0253878354379;PAX4:-0.0278830612608;HMX1:-0.0311172886559;SPI1:-0.0508121475136;NHLH1,2:-0.0531481992667;GTF2A1,2:-0.0762411255213;EGR1..3:-0.0939503612171;NFKB1_REL_RELA:-0.0945541526911;PATZ1:-0.152051167764;AIRE:-0.163372791191;PAX5:-0.181921786365;POU3F1..4:-0.214947195187;RREB1:-0.225899211603;ZNF238:-0.23744164095;ZNF423:-0.241054639412;STAT1,3:-0.249280255972;AR:-0.270653596713;HMGA1,2:-0.280488927752;CDC5L:-0.281101574867;JUN:-0.300849283597;LEF1_TCF7_TCF7L1,2:-0.325574089749;ESRRA:-0.328440137065;ATF5_CREB3:-0.339011628254;GATA6:-0.34494366036;TOPORS:-0.345264155513;REST:-0.375599788782;RXR{A,B,G}:-0.380137203177;ZBTB16:-0.383004501826;TGIF1:-0.384206502395;ZBTB6:-0.394124269753;GTF2I:-0.403938534389;TFDP1:-0.413206169769;bHLH_family:-0.41556033661;MYFfamily:-0.452226718832;NRF1:-0.472299717372;NKX3-1:-0.475140689864;UFEwm:-0.476209846746;NKX2-3_NKX2-5:-0.47774964235;ARID5B:-0.479165954848;GATA4:-0.483908439527;VSX1,2:-0.51083224374;MEF2{A,B,C,D}:-0.518878446488;MTF1:-0.523638993982;PDX1:-0.565597553928;RUNX1..3:-0.566675904306;MED-1{core}:-0.568099623585;CDX1,2,4:-0.608495697935;ZFP161:-0.617106126344;RFX2..5_RFXANK_RFXAP:-0.625755259385;NFIL3:-0.643339222658;PRRX1,2:-0.644365173611;MYB:-0.647644018215;TLX1..3_NFIC{dimer}:-0.650509542524;MYBL2:-0.659180464886;T:-0.664920957622;RFX1:-0.676449453256;NANOG:-0.677047994968;FOXD3:-0.696624962224;SOX2:-0.713332992053;FOXQ1:-0.721292577549;PPARG:-0.749095826268;CRX:-0.764588890289;MZF1:-0.791088965208;MYOD1:-0.791293459819;TFAP4:-0.792909378693;ONECUT1,2:-0.821109537267;BREu{core}:-0.825524040594;HBP1_HMGB_SSRP1_UBTF:-0.826356014064;NKX2-2,8:-0.828710661743;NKX6-1,2:-0.848723960468;KLF4:-0.863266692991;NFY{A,B,C}:-0.864512418714;PAX6:-0.876062264844;FOXL1:-0.885730570872;HIC1:-0.888652658539;LHX3,4:-0.89555803256;TAL1_TCF{3,4,12}:-0.90136634535;HSF1,2:-0.913952811958;PAX8:-0.927812525993;CUX2:-0.939039629815;IRF7:-0.957319648237;AHR_ARNT_ARNT2:-0.991148024315;RORA:-1.01672161556;SOX17:-1.02226848774;E2F1..5:-1.03214211077;DBP:-1.05326115048;POU2F1..3:-1.07619740074;NKX2-1,4:-1.10606807861;PRDM1:-1.12977048244;GFI1:-1.14138056771;HES1:-1.19820769011;DMAP1_NCOR{1,2}_SMARC:-1.22106593311;ZNF384:-1.24114105911;OCT4_SOX2{dimer}:-1.25188112757;HOX{A4,D4}:-1.27239957524;NFIX:-1.2799205104;TEF:-1.31382840572;POU6F1:-1.32180614087;NR5A1,2:-1.32504506072;LMO2:-1.36641717928;NR6A1:-1.39112718715;ADNP_IRX_SIX_ZHX:-1.44071904349;NR1H4:-1.51281125329;POU5F1:-1.566776516;STAT5{A,B}:-1.63627561255;SOX{8,9,10}:-1.66645106399;HOX{A5,B5}:-1.82535038475;TLX2:-2.02901972663;POU1F1:-2.06865965466;YY1:-2.07499543413;PBX1:-2.12847034827;RBPJ:-2.17181093905;NR3C1:-2.46818383943 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:577-18G3;search_select_hide=table117:577-18G3 | |||
}} | }} | ||
Latest revision as of 19:18, 4 June 2020
| Name: | placenta, adult pregnant day17 |
|---|---|
| Species: | Mouse (Mus musculus) |
| Library ID: | CNhs10464 |
| Sample type: | developmental |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10464
| 0 | 0 |
| 1 | 0 |
| 10 | 0 |
| 100 | 0 |
| 1000 | -0.0355 |
| 1001 | 0.00614 |
| 1002 | -0.0327 |
| 1003 | -0.156 |
| 1004 | 0 |
| 1005 | 0 |
| 1006 | -9.149961e-4 |
| 1007 | 0.0104 |
| 1008 | 0 |
| 1009 | 0.156 |
| 101 | -0.0736 |
| 1010 | 0 |
| 1011 | -0.0489 |
| 1012 | 0 |
| 1013 | 0.135 |
| 1014 | 0.308 |
| 1015 | -0.195 |
| 1016 | -0.152 |
| 1017 | 0 |
| 1018 | 0.562 |
| 1019 | 0 |
| 102 | 0 |
| 1020 | 0 |
| 1021 | 0 |
| 1022 | -0.162 |
| 1023 | 0 |
| 1024 | 0.0741 |
| 1025 | 0.356 |
| 1026 | 0 |
| 1027 | -0.048 |
| 1028 | 0.0834 |
| 1029 | 0.168 |
| 103 | 0 |
| 1030 | 0 |
| 1031 | -0.0143 |
| 1032 | 0.0829 |
| 1033 | -0.0665 |
| 1034 | 0 |
| 1035 | 0 |
| 1036 | -0.266 |
| 1037 | 0 |
| 1038 | 0.162 |
| 1039 | -0.149 |
| 104 | 0 |
| 1040 | 0.143 |
| 1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10464
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10464
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.496 |
| 10 | 10 | 0.779 |
| 100 | 100 | 0.678 |
| 101 | 101 | 0.803 |
| 102 | 102 | 0.174 |
| 103 | 103 | 0.809 |
| 104 | 104 | 0.77 |
| 105 | 105 | 0.935 |
| 106 | 106 | 0.426 |
| 107 | 107 | 0.294 |
| 108 | 108 | 0.972 |
| 109 | 109 | 0.672 |
| 11 | 11 | 0.84 |
| 110 | 110 | 0.682 |
| 111 | 111 | 0.365 |
| 112 | 112 | 0.144 |
| 113 | 113 | 0.565 |
| 114 | 114 | 0.758 |
| 115 | 115 | 0.839 |
| 116 | 116 | 0.362 |
| 117 | 117 | 0.174 |
| 118 | 118 | 0.919 |
| 119 | 119 | 0.29 |
| 12 | 12 | 0.585 |
| 120 | 120 | 0.149 |
| 121 | 121 | 0.264 |
| 122 | 122 | 0.74 |
| 123 | 123 | 0.0315 |
| 124 | 124 | 0.242 |
| 125 | 125 | 0.226 |
| 126 | 126 | 0.665 |
| 127 | 127 | 0.915 |
| 128 | 128 | 0.432 |
| 129 | 129 | 0.931 |
| 13 | 13 | 0.0147 |
| 130 | 130 | 0.0471 |
| 131 | 131 | 0.751 |
| 132 | 132 | 0.755 |
| 133 | 133 | 0.873 |
| 134 | 134 | 0.539 |
| 135 | 135 | 0.0795 |
| 136 | 136 | 9.28448e-4 |
| 137 | 137 | 0.416 |
| 138 | 138 | 0.017 |
| 139 | 139 | 0.153 |
| 14 | 14 | 0.943 |
| 140 | 140 | 0.132 |
| 141 | 141 | 0.864 |
| 142 | 142 | 0.63 |
| 143 | 143 | 0.979 |
| 144 | 144 | 0.626 |
| 145 | 145 | 0.889 |
| 146 | 146 | 0.614 |
| 147 | 147 | 0.286 |
| 148 | 148 | 0.507 |
| 149 | 149 | 0.878 |
| 15 | 15 | 0.8 |
| 150 | 150 | 0.103 |
| 151 | 151 | 0.321 |
| 152 | 152 | 0.0113 |
| 153 | 153 | 0.692 |
| 154 | 154 | 0.491 |
| 155 | 155 | 0.258 |
| 156 | 156 | 0.00505 |
| 157 | 157 | 0.359 |
| 158 | 158 | 0.0596 |
| 159 | 159 | 0.825 |
| 160 | 160 | 0.464 |
| 161 | 161 | 0.00682 |
| 162 | 162 | 0.737 |
| 163 | 163 | 0.207 |
| 164 | 164 | 0.141 |
| 165 | 165 | 0.907 |
| 166 | 166 | 0.0171 |
| 167 | 167 | 0.0888 |
| 168 | 168 | 0.215 |
| 169 | 169 | 0.079 |
| 17 | 17 | 0.108 |
| 18 | 18 | 0.969 |
| 19 | 19 | 0.0198 |
| 2 | 2 | 0.512 |
| 20 | 20 | 0.263 |
| 21 | 21 | 1 |
| 22 | 22 | 0.0365 |
| 23 | 23 | 0.0828 |
| 24 | 24 | 0.25 |
| 25 | 25 | 0.899 |
| 26 | 26 | 0.566 |
| 27 | 27 | 0.195 |
| 28 | 28 | 0.552 |
| 29 | 29 | 0.57 |
| 3 | 3 | 0.829 |
| 30 | 30 | 0.538 |
| 31 | 31 | 0.332 |
| 32 | 32 | 0.592 |
| 33 | 33 | 0.774 |
| 34 | 34 | 0.913 |
| 35 | 35 | 0.00474 |
| 36 | 36 | 0.15 |
| 37 | 37 | 0.0986 |
| 38 | 38 | 0.618 |
| 39 | 39 | 0.517 |
| 4 | 4 | 0.0417 |
| 40 | 40 | 0.637 |
| 41 | 41 | 0.609 |
| 42 | 42 | 0.812 |
| 43 | 43 | 0.948 |
| 44 | 44 | 0.841 |
| 45 | 45 | 0.124 |
| 46 | 46 | 0.619 |
| 47 | 47 | 0.506 |
| 48 | 48 | 0.612 |
| 49 | 49 | 0.63 |
| 5 | 5 | 0.629 |
| 50 | 50 | 0.245 |
| 51 | 51 | 0.905 |
| 52 | 52 | 0.453 |
| 53 | 53 | 0.72 |
| 54 | 54 | 0.633 |
| 55 | 55 | 0.291 |
| 56 | 56 | 0.942 |
| 57 | 57 | 0.191 |
| 58 | 58 | 0.609 |
| 59 | 59 | 0.775 |
| 6 | 6 | 0.996 |
| 60 | 60 | 0.233 |
| 61 | 61 | 0.299 |
| 62 | 62 | 0.546 |
| 63 | 63 | 0.455 |
| 64 | 64 | 0.372 |
| 65 | 65 | 0.698 |
| 66 | 66 | 0.829 |
| 67 | 67 | 0.469 |
| 68 | 68 | 0.188 |
| 69 | 69 | 0.223 |
| 7 | 7 | 0.569 |
| 70 | 70 | 0.119 |
| 71 | 71 | 0.253 |
| 72 | 72 | 0.574 |
| 73 | 73 | 0.00626 |
| 74 | 74 | 0.776 |
| 75 | 75 | 0.475 |
| 76 | 76 | 0.349 |
| 77 | 77 | 0.699 |
| 78 | 78 | 0.00868 |
| 79 | 79 | 0.291 |
| 8 | 8 | 0.0628 |
| 80 | 80 | 0.517 |
| 81 | 81 | 0.319 |
| 82 | 82 | 0.917 |
| 83 | 83 | 0.615 |
| 84 | 84 | 0.547 |
| 85 | 85 | 0.673 |
| 86 | 86 | 0.59 |
| 87 | 87 | 0.00236 |
| 88 | 88 | 0.326 |
| 89 | 89 | 0.825 |
| 9 | 9 | 0.719 |
| 90 | 90 | 0.0909 |
| 91 | 91 | 0.615 |
| 92 | 92 | 0.383 |
| 93 | 93 | 0.132 |
| 94 | 94 | 0.0126 |
| 95 | 95 | 0.203 |
| 96 | 96 | 0.878 |
| 97 | 97 | 0.499 |
| 98 | 98 | 0.383 |
| 99 | 99 | 0.213 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10464
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011384 mouse placenta- adult pregnant day17 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001987 (placenta)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0000317 (mouse pregnant tissue sample)
0000321 (mouse pregnant day 17 sample)
0011384 (mouse placenta- adult pregnant day17 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0003124 (chorion)
UBERON:0010316 (germ layer / neural crest)
