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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005574
|DRA_sample_Accession=CAGE@SAMD00005574
|accession_numbers=CAGE;DRX007827;DRR008699;DRZ000124;DRZ001509
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005574
|accession_numbers=CAGE;DRX007827;DRR008699;DRZ000124;DRZ001509;DRZ011474;DRZ012859
|accession_numbers_RNASeq=RNA-Seq;DRX057141;DRR062900;DRZ007976
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.45!280.83!IRF4;;chr1:212873162..212873188,-!p3@BATF3!2.34!218.86!BATF3;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.63!ZBED2;;chr1:212873267..212873332,-!p1@BATF3!1.79!81.25!BATF3;;chr7:99621306..99621328,+!p5@ZKSCAN1!1.79!60.65!ZKSCAN1;;chr14:75988771..75988826,+!p1@BATF!1.70!64.93!BATF;;chr1:151798546..151798590,-!p2@RORC!1.68!47.30!RORC;;chr1:212873084..212873137,-!p2@BATF3!1.64!42.85!BATF3;;chr1:25291475..25291511,-!p2@RUNX3!1.62!40.38!RUNX3;;chr1:212873200..212873230,-!p5@BATF3!1.56!35.10!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.50!30.49!SP140;;chr2:231090471..231090504,+!p2@SP140!1.49!30.16!SP140;;chr14:75988831..75988847,+!p2@BATF!1.46!28.02!BATF;;chr19:36204309..36204335,+!p1@ZBTB32!1.46!27.52!ZBTB32;;chr6:135502408..135502459,+!p2@MYB!1.45!31.31!MYB;;chr1:212873061..212873080,-!p4@BATF3!1.45!27.03!BATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.44!33.29!NCOA7;;chr7:50348268..50348366,+!p4@IKZF1!1.44!26.37!IKZF1;;chr20:42295745..42295765,+!p1@MYBL2!1.43!402.12!MYBL2;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.54!IKZF1;;chr17:8027418..8027432,-!p1@HES7!1.41!24.72!HES7;;chr9:4117869..4117882,-!p12@GLIS3!1.40!24.23!GLIS3;;chr6:135502501..135502546,+!p1@MYB!1.39!28.35!MYB;;chr11:34645791..34645836,+!p3@EHF!1.38!23.24!EHF;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.68!BCL3;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.76!NCOA7;;chr20:62462566..62462631,-!p1@ZBTB46!1.32!37.41!ZBTB46;;chr6:106534192..106534224,+!p1@PRDM1!1.21!42.85!PRDM1;;chr2:191906489..191906517,-!p6@STAT4!1.20!14.67!STAT4;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.16!NCOA7;;chr15:60884706..60884743,-!p1@RORA!1.15!67.57!RORA;;chr6:106534230..106534254,+!p2@PRDM1!1.15!32.80!PRDM1;;chr22:30144620..30144638,-!p7@ZMAT5!1.15!13.02!ZMAT5;;chr12:27485762..27485776,+!p3@ARNTL2!1.13!33.46!ARNTL2;;chr20:42295713..42295738,+!p2@MYBL2!1.11!70.37!MYBL2;;chr22:30144465..30144495,-!p6@ZMAT5!1.11!11.87!ZMAT5;;chr1:158979872..158979898,+!p3@IFI16!1.09!35.27!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.34!PRDM1;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.21!GFI1;;chr3:18486354..18486377,-!p2@SATB1!1.07!13.35!SATB1;;chr13:100634031..100634045,+!p1@ZIC2!1.06!10.38!ZIC2;;chr1:25256756..25256774,-!p1@RUNX3!1.04!18.79!RUNX3;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.05!ZBED2;;chr6:45390399..45390418,+!p15@RUNX2!1.02!9.39!RUNX2;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.20!PCBP3;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.82!GLIS3;;chr6:45390300..45390335,+!p4@RUNX2!1.00!14.17!RUNX2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.99!14.34!ZC3H11A;;chr6:135502472..135502489,+!p3@MYB!0.99!8.73!MYB;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.68!IRF5;;chr1:158978768..158978800,+!p8@IFI16!0.98!8.57!IFI16;;chr1:3569072..3569093,+!p1@TP73!0.98!8.57!TP73;;chr14:95236551..95236576,-!p2@GSC!0.98!8.57!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.97!8.24!IRF8;;chr2:97202480..97202499,+!p1@ARID5A!0.94!80.75!ARID5A;;chr7:50344251..50344288,+!p3@IKZF1!0.94!7.75!IKZF1;;chr2:231134598..231134640,+!p6@SP140!0.93!7.42!SP140;;chr6:45390442..45390479,+!p8@RUNX2!0.91!11.21!RUNX2;;chr8:145669791..145669834,-!p1@TONSL!0.90!20.77!TONSL;;chr6:45390025..45390076,+!p2@RUNX2!0.90!17.14!RUNX2;;chr8:28243813..28243839,-!p4@ZNF395!0.90!12.85!ZNF395;;chr16:29818199..29818216,+!p11@MAZ!0.89!11.37!MAZ;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.29!EPAS1;;chr6:45390343..45390388,+!p10@RUNX2!0.86!8.73!RUNX2;;chr6:100061724..100061753,+!p1@PRDM13!0.86!6.26!PRDM13;;chr6:45390077..45390105,+!p9@RUNX2!0.85!7.91!RUNX2;;chr1:46972279..46972288,+!p1@DMBX1!0.85!6.10!DMBX1;;chrX:152599604..152599626,+!p1@ZNF275!0.84!48.12!ZNF275;;chr11:614891..614902,-!p15@IRF7!0.84!5.93!IRF7;;chr19:50432453..50432468,+!p1@ATF5!0.83!342.79!ATF5;;chr8:116681409..116681431,-!p2@TRPS1!0.83!16.48!TRPS1;;chr9:77112244..77112262,+!p1@RORB!0.82!6.43!RORB;;chr3:27763807..27763822,-!p1@EOMES!0.82!5.60!EOMES;;chr1:151804244..151804310,-!p1@RORC!0.81!5.44!RORC;;chr5:138609782..138609826,+!p5@MATR3!0.80!37.08!MATR3;;chr13:27998854..27998866,+!p3@GTF3A!0.80!11.37!GTF3A;;chr19:31840130..31840160,-!p2@TSHZ3!0.80!8.57!TSHZ3;;chr5:176738887..176738934,-!p1@MXD3!0.79!37.58!MXD3;;chr11:6947720..6947812,+!p1@ZNF215!0.79!6.92!ZNF215;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.11!KDM5D;;chr11:615570..615721,-!p2@IRF7!0.78!10.38!IRF7;;chr11:120107344..120107351,+!p1@POU2F3!0.78!6.26!POU2F3;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.94!ZIC5;;chr21:36207322..36207331,-!p65@RUNX1!0.77!4.94!RUNX1;;chr19:57791328..57791377,+!p2@ZNF460!0.76!62.96!ZNF460;;chr12:27485785..27485816,+!p1@ARNTL2!0.76!36.75!ARNTL2;;chr13:27998831..27998851,+!p2@GTF3A!0.76!31.48!GTF3A;;chr1:221052776..221052799,+!p1@HLX!0.76!9.06!HLX;;chr1:151798601..151798617,-!p3@RORC!0.76!4.78!RORC;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.78!ZFY;;chr19:12902289..12902307,+!p1@JUNB!0.75!1172.58!JUNB;;chr2:8822176..8822196,+!p1@ID2!0.75!728.76!ID2;;chr1:151319654..151319698,-!p2@RFX5!0.75!10.88!RFX5;;chr8:28243785..28243799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|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.45!280.83!IRF4;;chr1:212873162..212873188,-!p3@BATF3!2.34!218.86!BATF3;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.63!ZBED2;;chr1:212873267..212873332,-!p1@BATF3!1.79!81.25!BATF3;;chr7:99621306..99621328,+!p5@ZKSCAN1!1.79!60.65!ZKSCAN1;;chr14:75988771..75988826,+!p1@BATF!1.70!64.93!BATF;;chr1:151798546..151798590,-!p2@RORC!1.68!47.30!RORC;;chr1:212873084..212873137,-!p2@BATF3!1.64!42.85!BATF3;;chr1:25291475..25291511,-!p2@RUNX3!1.62!40.38!RUNX3;;chr1:212873200..212873230,-!p5@BATF3!1.56!35.10!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.50!30.49!SP140;;chr2:231090471..231090504,+!p2@SP140!1.49!30.16!SP140;;chr14:75988831..75988847,+!p2@BATF!1.46!28.02!BATF;;chr19:36204309..36204335,+!p1@ZBTB32!1.46!27.52!ZBTB32;;chr6:135502408..135502459,+!p2@MYB!1.45!31.31!MYB;;chr1:212873061..212873080,-!p4@BATF3!1.45!27.03!BATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.44!33.29!NCOA7;;chr7:50348268..50348366,+!p4@IKZF1!1.44!26.37!IKZF1;;chr20:42295745..42295765,+!p1@MYBL2!1.43!402.12!MYBL2;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.54!IKZF1;;chr17:8027418..8027432,-!p1@HES7!1.41!24.72!HES7;;chr9:4117869..4117882,-!p12@GLIS3!1.40!24.23!GLIS3;;chr6:135502501..135502546,+!p1@MYB!1.39!28.35!MYB;;chr11:34645791..34645836,+!p3@EHF!1.38!23.24!EHF;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.68!BCL3;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.76!NCOA7;;chr20:62462566..62462631,-!p1@ZBTB46!1.32!37.41!ZBTB46;;chr6:106534192..106534224,+!p1@PRDM1!1.21!42.85!PRDM1;;chr2:191906489..191906517,-!p6@STAT4!1.20!14.67!STAT4;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.16!NCOA7;;chr15:60884706..60884743,-!p1@RORA!1.15!67.57!RORA;;chr6:106534230..106534254,+!p2@PRDM1!1.15!32.80!PRDM1;;chr22:30144620..30144638,-!p7@ZMAT5!1.15!13.02!ZMAT5;;chr12:27485762..27485776,+!p3@ARNTL2!1.13!33.46!ARNTL2;;chr20:42295713..42295738,+!p2@MYBL2!1.11!70.37!MYBL2;;chr22:30144465..30144495,-!p6@ZMAT5!1.11!11.87!ZMAT5;;chr1:158979872..158979898,+!p3@IFI16!1.09!35.27!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.34!PRDM1;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.21!GFI1;;chr3:18486354..18486377,-!p2@SATB1!1.07!13.35!SATB1;;chr13:100634031..100634045,+!p1@ZIC2!1.06!10.38!ZIC2;;chr1:25256756..25256774,-!p1@RUNX3!1.04!18.79!RUNX3;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.05!ZBED2;;chr6:45390399..45390418,+!p15@RUNX2!1.02!9.39!RUNX2;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.20!PCBP3;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.82!GLIS3;;chr6:45390300..45390335,+!p4@RUNX2!1.00!14.17!RUNX2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.99!14.34!ZC3H11A;;chr6:135502472..135502489,+!p3@MYB!0.99!8.73!MYB;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.68!IRF5;;chr1:158978768..158978800,+!p8@IFI16!0.98!8.57!IFI16;;chr1:3569072..3569093,+!p1@TP73!0.98!8.57!TP73;;chr14:95236551..95236576,-!p2@GSC!0.98!8.57!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.97!8.24!IRF8;;chr2:97202480..97202499,+!p1@ARID5A!0.94!80.75!ARID5A;;chr7:50344251..50344288,+!p3@IKZF1!0.94!7.75!IKZF1;;chr2:231134598..231134640,+!p6@SP140!0.93!7.42!SP140;;chr6:45390442..45390479,+!p8@RUNX2!0.91!11.21!RUNX2;;chr8:145669791..145669834,-!p1@TONSL!0.90!20.77!TONSL;;chr6:45390025..45390076,+!p2@RUNX2!0.90!17.14!RUNX2;;chr8:28243813..28243839,-!p4@ZNF395!0.90!12.85!ZNF395;;chr16:29818199..29818216,+!p11@MAZ!0.89!11.37!MAZ;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.29!EPAS1;;chr6:45390343..45390388,+!p10@RUNX2!0.86!8.73!RUNX2;;chr6:100061724..100061753,+!p1@PRDM13!0.86!6.26!PRDM13;;chr6:45390077..45390105,+!p9@RUNX2!0.85!7.91!RUNX2;;chr1:46972279..46972288,+!p1@DMBX1!0.85!6.10!DMBX1;;chrX:152599604..152599626,+!p1@ZNF275!0.84!48.12!ZNF275;;chr11:614891..614902,-!p15@IRF7!0.84!5.93!IRF7;;chr19:50432453..50432468,+!p1@ATF5!0.83!342.79!ATF5;;chr8:116681409..116681431,-!p2@TRPS1!0.83!16.48!TRPS1;;chr9:77112244..77112262,+!p1@RORB!0.82!6.43!RORB;;chr3:27763807..27763822,-!p1@EOMES!0.82!5.60!EOMES;;chr1:151804244..151804310,-!p1@RORC!0.81!5.44!RORC;;chr5:138609782..138609826,+!p5@MATR3!0.80!37.08!MATR3;;chr13:27998854..27998866,+!p3@GTF3A!0.80!11.37!GTF3A;;chr19:31840130..31840160,-!p2@TSHZ3!0.80!8.57!TSHZ3;;chr5:176738887..176738934,-!p1@MXD3!0.79!37.58!MXD3;;chr11:6947720..6947812,+!p1@ZNF215!0.79!6.92!ZNF215;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.11!KDM5D;;chr11:615570..615721,-!p2@IRF7!0.78!10.38!IRF7;;chr11:120107344..120107351,+!p1@POU2F3!0.78!6.26!POU2F3;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.94!ZIC5;;chr21:36207322..36207331,-!p65@RUNX1!0.77!4.94!RUNX1;;chr19:57791328..57791377,+!p2@ZNF460!0.76!62.96!ZNF460;;chr12:27485785..27485816,+!p1@ARNTL2!0.76!36.75!ARNTL2;;chr13:27998831..27998851,+!p2@GTF3A!0.76!31.48!GTF3A;;chr1:221052776..221052799,+!p1@HLX!0.76!9.06!HLX;;chr1:151798601..151798617,-!p3@RORC!0.76!4.78!RORC;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.78!ZFY;;chr19:12902289..12902307,+!p1@JUNB!0.75!1172.58!JUNB;;chr2:8822176..8822196,+!p1@ID2!0.75!728.76!ID2;;chr1:151319654..151319698,-!p2@RFX5!0.75!10.88!RFX5;;chr8:28243785..28243799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Line 41: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520large%2520cell%2520lymphoma%2520cell%2520line%253aKi-JK.CNhs11881.10795-110I3.hg38.nobarcode.ctss.bed.gz
|id=FF:10795-110I3
|id=FF:10795-110I3
|is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0104868
|is_a=CL:0000084;;EFO:0002091;;FF:0000210;;FF:0104868
|is_obsolete=
|is_obsolete=
|library_id=CNhs11881
|library_id=CNhs11881
|library_id_phase_based=1:CNhs11881
|library_id_phase_based=2:CNhs11881
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10795
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10795
|name=anaplastic large cell lymphoma cell line:Ki-JK
|name=anaplastic large cell lymphoma cell line:Ki-JK
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11881,LSID830,release010,COMPLETED
|profile_hcage=CNhs11881,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 90: Line 103:
|top_motifs=RORA:1.99004417418;STAT2,4,6:1.89207230724;PITX1..3:1.67302994274;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.51248828305;MYB:1.50714663533;E2F1..5:1.48796679996;POU2F1..3:1.37497737004;AIRE:1.34916949614;YY1:1.26928235517;ELK1,4_GABP{A,B1}:1.22838791269;NKX6-1,2:1.19926725826;NRF1:1.04421072281;TOPORS:1.00900158984;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.946866536777;HIF1A:0.932512691852;NR5A1,2:0.913613420423;HOX{A6,A7,B6,B7}:0.90961671042;bHLH_family:0.841350373659;FOXP1:0.777163400109;STAT5{A,B}:0.729235357523;ELF1,2,4:0.728262232023;CREB1:0.704866824524;RFX2..5_RFXANK_RFXAP:0.678514184229;TEF:0.605847325071;ZNF143:0.585148947532;PAX4:0.583824640483;GFI1:0.545357942436;IKZF2:0.541043429329;TFDP1:0.535466586381;PAX3,7:0.513283691132;CEBPA,B_DDIT3:0.508129272023;ESRRA:0.470984566687;ATF4:0.469167321962;HES1:0.464915167437;IRF1,2:0.463219221614;VSX1,2:0.452645546497;POU1F1:0.450599192491;CUX2:0.415322413406;RUNX1..3:0.39297757058;IRF7:0.377230241832;ZBTB16:0.360937476028;CDX1,2,4:0.350659829862;NFE2:0.340180919639;NR1H4:0.313239696596;TLX2:0.31323847798;SPI1:0.286689958922;PRRX1,2:0.276009873452;FOS_FOS{B,L1}_JUN{B,D}:0.252693188727;FOXM1:0.218757536525;NFE2L2:0.215225664401;NKX3-1:0.197727763279;PAX8:0.185033466343;DMAP1_NCOR{1,2}_SMARC:0.156695582046;NKX3-2:0.142624875596;POU3F1..4:0.132832947912;GATA6:0.129645621761;CRX:0.118974359203;OCT4_SOX2{dimer}:0.118223850308;BACH2:0.114320503602;ATF5_CREB3:0.110840500071;ADNP_IRX_SIX_ZHX:0.109681554813;NFE2L1:0.0960121517918;NANOG{mouse}:0.0843806475538;AHR_ARNT_ARNT2:0.0696533993262;SPIB:0.0659252864622;HLF:0.0654069570907;SOX17:0.0577935268239;BREu{core}:0.0532110817186;TAL1_TCF{3,4,12}:0.0469940283056;HAND1,2:0.0453033119615;NFY{A,B,C}:0.0444945514986;FOXA2:0.0339000898361;FOXD3:0.0331705121838;HOXA9_MEIS1:0.0304473404263;FOXP3:0.0299404973411;ETS1,2:0.0261314064052;FOSL2:0.0222389503881;NKX2-1,4:0.0210748077038;NANOG:0.0195194014898;EN1,2:0.0176943640611;PAX2:-0.00140090236467;GFI1B:-0.00192254150014;ONECUT1,2:-0.00853838138605;FOX{I1,J2}:-0.0152331320738;SOX{8,9,10}:-0.0269983038675;ZEB1:-0.049335454223;ARID5B:-0.112750401759;UFEwm:-0.115007888837;HNF1A:-0.188099365219;PAX6:-0.192572324245;NFKB1_REL_RELA:-0.202782747335;NFIL3:-0.216031988779;ESR1:-0.222860288334;PAX1,9:-0.223760410189;RFX1:-0.237580680918;ZNF384:-0.241464222;NR6A1:-0.270886543608;PPARG:-0.281855504159;MYOD1:-0.291477698925;HNF4A_NR2F1,2:-0.29995903251;LMO2:-0.333565577921;ALX1:-0.34990176721;CDC5L:-0.371870197129;SNAI1..3:-0.398436200569;GCM1,2:-0.412940348852;PBX1:-0.421011634478;NKX2-2,8:-0.42215402691;POU5F1:-0.433303701662;TGIF1:-0.455537390308;EP300:-0.470470917344;TP53:-0.484281741776;HOX{A5,B5}:-0.485210208491;RBPJ:-0.496815628425;FOX{F1,F2,J1}:-0.501195607452;ZNF423:-0.504900019109;DBP:-0.514084000062;FOXN1:-0.518060775417;REST:-0.557511130756;JUN:-0.573557863266;GTF2A1,2:-0.612906726358;HSF1,2:-0.632484099772;BPTF:-0.632843526829;RXRA_VDR{dimer}:-0.632851499008;GZF1:-0.642914805754;KLF4:-0.685251208833;EVI1:-0.686385306354;ATF6:-0.708397488747;ATF2:-0.721774216794;MYFfamily:-0.729827780482;ZIC1..3:-0.730697120331;MEF2{A,B,C,D}:-0.756205751484;NKX2-3_NKX2-5:-0.769733246477;GATA4:-0.778922671399;STAT1,3:-0.791873201454;TBP:-0.821985220001;SOX5:-0.831687441267;ZFP161:-0.832405605898;XBP1:-0.839570073142;FOXQ1:-0.848969956248;IKZF1:-0.864773993023;HOX{A4,D4}:-0.874093191252;ZNF148:-0.896653260181;POU6F1:-0.905386184232;ALX4:-0.918403910921;LEF1_TCF7_TCF7L1,2:-0.94656333382;NFIX:-0.957234477824;TFAP4:-0.98199018494;FOXL1:-0.99688712149;HMX1:-1.01710509076;MZF1:-1.06267951887;HIC1:-1.06541617383;AR:-1.10089286847;SP1:-1.15495894717;SOX2:-1.15956142387;TFAP2B:-1.16884405768;MED-1{core}:-1.17231781454;ZBTB6:-1.182675761;FOX{D1,D2}:-1.19628562612;MYBL2:-1.19939651972;TEAD1:-1.21163699126;SRF:-1.23164507034;LHX3,4:-1.23694002432;TFAP2{A,C}:-1.27163480823;NFATC1..3:-1.34463229753;PRDM1:-1.35840827756;RXR{A,B,G}:-1.35934582516;PATZ1:-1.36040557395;MTF1:-1.36406939966;NHLH1,2:-1.38623260653;GLI1..3:-1.3945790767;MAFB:-1.40750666975;PAX5:-1.41329981223;SREBF1,2:-1.42274077417;XCPE1{core}:-1.43365408719;EGR1..3:-1.45296741102;TLX1..3_NFIC{dimer}:-1.46404324353;GTF2I:-1.47453177849;MAZ:-1.49347722393;EBF1:-1.53770741673;HMGA1,2:-1.54565869625;ZNF238:-1.56969540651;RREB1:-1.57171064027;TBX4,5:-1.5843517216;PDX1:-1.58843846863;MTE{core}:-1.6263148523;HBP1_HMGB_SSRP1_UBTF:-1.668832337;T:-1.68971520345;FOXO1,3,4:-1.79385610957;TFCP2:-1.87263386517;NR3C1:-2.05547821954;SMAD1..7,9:-2.31262590381;SPZ1:-2.68441035328
|top_motifs=RORA:1.99004417418;STAT2,4,6:1.89207230724;PITX1..3:1.67302994274;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.51248828305;MYB:1.50714663533;E2F1..5:1.48796679996;POU2F1..3:1.37497737004;AIRE:1.34916949614;YY1:1.26928235517;ELK1,4_GABP{A,B1}:1.22838791269;NKX6-1,2:1.19926725826;NRF1:1.04421072281;TOPORS:1.00900158984;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.946866536777;HIF1A:0.932512691852;NR5A1,2:0.913613420423;HOX{A6,A7,B6,B7}:0.90961671042;bHLH_family:0.841350373659;FOXP1:0.777163400109;STAT5{A,B}:0.729235357523;ELF1,2,4:0.728262232023;CREB1:0.704866824524;RFX2..5_RFXANK_RFXAP:0.678514184229;TEF:0.605847325071;ZNF143:0.585148947532;PAX4:0.583824640483;GFI1:0.545357942436;IKZF2:0.541043429329;TFDP1:0.535466586381;PAX3,7:0.513283691132;CEBPA,B_DDIT3:0.508129272023;ESRRA:0.470984566687;ATF4:0.469167321962;HES1:0.464915167437;IRF1,2:0.463219221614;VSX1,2:0.452645546497;POU1F1:0.450599192491;CUX2:0.415322413406;RUNX1..3:0.39297757058;IRF7:0.377230241832;ZBTB16:0.360937476028;CDX1,2,4:0.350659829862;NFE2:0.340180919639;NR1H4:0.313239696596;TLX2:0.31323847798;SPI1:0.286689958922;PRRX1,2:0.276009873452;FOS_FOS{B,L1}_JUN{B,D}:0.252693188727;FOXM1:0.218757536525;NFE2L2:0.215225664401;NKX3-1:0.197727763279;PAX8:0.185033466343;DMAP1_NCOR{1,2}_SMARC:0.156695582046;NKX3-2:0.142624875596;POU3F1..4:0.132832947912;GATA6:0.129645621761;CRX:0.118974359203;OCT4_SOX2{dimer}:0.118223850308;BACH2:0.114320503602;ATF5_CREB3:0.110840500071;ADNP_IRX_SIX_ZHX:0.109681554813;NFE2L1:0.0960121517918;NANOG{mouse}:0.0843806475538;AHR_ARNT_ARNT2:0.0696533993262;SPIB:0.0659252864622;HLF:0.0654069570907;SOX17:0.0577935268239;BREu{core}:0.0532110817186;TAL1_TCF{3,4,12}:0.0469940283056;HAND1,2:0.0453033119615;NFY{A,B,C}:0.0444945514986;FOXA2:0.0339000898361;FOXD3:0.0331705121838;HOXA9_MEIS1:0.0304473404263;FOXP3:0.0299404973411;ETS1,2:0.0261314064052;FOSL2:0.0222389503881;NKX2-1,4:0.0210748077038;NANOG:0.0195194014898;EN1,2:0.0176943640611;PAX2:-0.00140090236467;GFI1B:-0.00192254150014;ONECUT1,2:-0.00853838138605;FOX{I1,J2}:-0.0152331320738;SOX{8,9,10}:-0.0269983038675;ZEB1:-0.049335454223;ARID5B:-0.112750401759;UFEwm:-0.115007888837;HNF1A:-0.188099365219;PAX6:-0.192572324245;NFKB1_REL_RELA:-0.202782747335;NFIL3:-0.216031988779;ESR1:-0.222860288334;PAX1,9:-0.223760410189;RFX1:-0.237580680918;ZNF384:-0.241464222;NR6A1:-0.270886543608;PPARG:-0.281855504159;MYOD1:-0.291477698925;HNF4A_NR2F1,2:-0.29995903251;LMO2:-0.333565577921;ALX1:-0.34990176721;CDC5L:-0.371870197129;SNAI1..3:-0.398436200569;GCM1,2:-0.412940348852;PBX1:-0.421011634478;NKX2-2,8:-0.42215402691;POU5F1:-0.433303701662;TGIF1:-0.455537390308;EP300:-0.470470917344;TP53:-0.484281741776;HOX{A5,B5}:-0.485210208491;RBPJ:-0.496815628425;FOX{F1,F2,J1}:-0.501195607452;ZNF423:-0.504900019109;DBP:-0.514084000062;FOXN1:-0.518060775417;REST:-0.557511130756;JUN:-0.573557863266;GTF2A1,2:-0.612906726358;HSF1,2:-0.632484099772;BPTF:-0.632843526829;RXRA_VDR{dimer}:-0.632851499008;GZF1:-0.642914805754;KLF4:-0.685251208833;EVI1:-0.686385306354;ATF6:-0.708397488747;ATF2:-0.721774216794;MYFfamily:-0.729827780482;ZIC1..3:-0.730697120331;MEF2{A,B,C,D}:-0.756205751484;NKX2-3_NKX2-5:-0.769733246477;GATA4:-0.778922671399;STAT1,3:-0.791873201454;TBP:-0.821985220001;SOX5:-0.831687441267;ZFP161:-0.832405605898;XBP1:-0.839570073142;FOXQ1:-0.848969956248;IKZF1:-0.864773993023;HOX{A4,D4}:-0.874093191252;ZNF148:-0.896653260181;POU6F1:-0.905386184232;ALX4:-0.918403910921;LEF1_TCF7_TCF7L1,2:-0.94656333382;NFIX:-0.957234477824;TFAP4:-0.98199018494;FOXL1:-0.99688712149;HMX1:-1.01710509076;MZF1:-1.06267951887;HIC1:-1.06541617383;AR:-1.10089286847;SP1:-1.15495894717;SOX2:-1.15956142387;TFAP2B:-1.16884405768;MED-1{core}:-1.17231781454;ZBTB6:-1.182675761;FOX{D1,D2}:-1.19628562612;MYBL2:-1.19939651972;TEAD1:-1.21163699126;SRF:-1.23164507034;LHX3,4:-1.23694002432;TFAP2{A,C}:-1.27163480823;NFATC1..3:-1.34463229753;PRDM1:-1.35840827756;RXR{A,B,G}:-1.35934582516;PATZ1:-1.36040557395;MTF1:-1.36406939966;NHLH1,2:-1.38623260653;GLI1..3:-1.3945790767;MAFB:-1.40750666975;PAX5:-1.41329981223;SREBF1,2:-1.42274077417;XCPE1{core}:-1.43365408719;EGR1..3:-1.45296741102;TLX1..3_NFIC{dimer}:-1.46404324353;GTF2I:-1.47453177849;MAZ:-1.49347722393;EBF1:-1.53770741673;HMGA1,2:-1.54565869625;ZNF238:-1.56969540651;RREB1:-1.57171064027;TBX4,5:-1.5843517216;PDX1:-1.58843846863;MTE{core}:-1.6263148523;HBP1_HMGB_SSRP1_UBTF:-1.668832337;T:-1.68971520345;FOXO1,3,4:-1.79385610957;TFCP2:-1.87263386517;NR3C1:-2.05547821954;SMAD1..7,9:-2.31262590381;SPZ1:-2.68441035328
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10795-110I3;search_select_hide=table117:FF:10795-110I3
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:anaplastic large cell lymphoma cell line:Ki-JK
Species:Human (Homo sapiens)
Library ID:CNhs11881
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age15
cell typelymphoid cell
cell lineKi-JK
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005574
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11881 CAGE DRX007827 DRR008699
Accession ID Hg19

Library idBAMCTSS
CNhs11881 DRZ000124 DRZ001509
Accession ID Hg38

Library idBAMCTSS
CNhs11881 DRZ011474 DRZ012859
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005574
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10084 RNA-Seq DRX057141 DRR062900
Accession ID Hg19

Library idBAMCTSS
RDhi10084 DRZ007976


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.282
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.479
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.018
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0334
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0818
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.299
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0812
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0424
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0833
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.65
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.0663
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0642
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0299
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0634
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0663
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0498
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0663
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0.966
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11881

Jaspar motifP-value
MA0002.20.00765
MA0003.10.706
MA0004.10.0699
MA0006.10.178
MA0007.10.887
MA0009.10.661
MA0014.10.811
MA0017.10.597
MA0018.20.454
MA0019.10.113
MA0024.10.00231
MA0025.10.294
MA0027.10.786
MA0028.16.6802e-5
MA0029.10.827
MA0030.10.00859
MA0031.10.00438
MA0035.20.626
MA0038.10.914
MA0039.20.824
MA0040.10.0748
MA0041.10.267
MA0042.10.441
MA0043.10.162
MA0046.10.75
MA0047.20.123
MA0048.10.0962
MA0050.11.27002e-6
MA0051.10.00144
MA0052.10.0337
MA0055.10.016
MA0057.10.877
MA0058.10.101
MA0059.11.37079e-4
MA0060.10.281
MA0061.10.551
MA0062.26.76937e-7
MA0065.20.044
MA0066.10.515
MA0067.10.432
MA0068.10.268
MA0069.10.278
MA0070.10.271
MA0071.10.0715
MA0072.10.214
MA0073.10.943
MA0074.10.648
MA0076.12.23231e-5
MA0077.10.221
MA0078.10.552
MA0079.20.117
MA0080.20.142
MA0081.10.249
MA0083.10.0152
MA0084.10.346
MA0087.10.285
MA0088.10.00155
MA0090.10.0115
MA0091.10.503
MA0092.10.548
MA0093.10.0689
MA0099.21.89598e-6
MA0100.10.132
MA0101.10.763
MA0102.20.249
MA0103.10.504
MA0104.28.0745e-5
MA0105.10.00336
MA0106.10.55
MA0107.10.235
MA0108.22.11641e-7
MA0111.10.343
MA0112.20.273
MA0113.10.722
MA0114.10.134
MA0115.10.488
MA0116.10.00702
MA0117.10.716
MA0119.10.372
MA0122.10.715
MA0124.10.257
MA0125.10.658
MA0131.10.125
MA0135.10.0848
MA0136.15.03159e-5
MA0137.21.98013e-6
MA0138.20.393
MA0139.10.208
MA0140.10.823
MA0141.10.00436
MA0142.10.516
MA0143.10.602
MA0144.10.00126
MA0145.10.44
MA0146.10.0493
MA0147.13.56026e-6
MA0148.10.552
MA0149.10.0255
MA0150.10.00175
MA0152.10.462
MA0153.10.0664
MA0154.10.543
MA0155.10.127
MA0156.11.6652e-7
MA0157.10.0429
MA0159.10.116
MA0160.10.0281
MA0162.10.576
MA0163.11.56241e-13
MA0164.10.79
MA0258.10.182
MA0259.10.0159



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11881

Novel motifP-value
10.018
100.014
1000.0229
1010.534
1020.371
1030.308
1040.793
1050.631
1060.594
1070.275
1080.719
1090.00369
110.0352
1100.138
1110.327
1120.617
1130.932
1140.24
1150.656
1160.125
1170.00433
1180.0619
1190.266
120.749
1200.354
1210.154
1220.467
1232.56098e-4
1240.629
1250.599
1260.528
1270.655
1280.263
1290.32
130.0296
1300.754
1310.9
1320.668
1330.293
1340.811
1350.314
1360.0724
1370.656
1380.147
1390.303
140.875
1400.198
1410.96
1420.361
1430.011
1440.821
1450.781
1460.708
1470.328
1480.0868
1490.255
150.0835
1500.941
1510.767
1520.291
1530.922
1540.804
1550.134
1560.48
1570.618
1580.657
1590.812
160.955
1600.299
1610.572
1620.141
1630.722
1640.0137
1650.643
1660.264
1670.0377
1680.374
1690.118
170.726
180.225
190.739
20.407
200.107
210.102
220.92
230.463
240.257
250.15
260.0125
270.812
280.898
290.0434
30.154
300.0625
310.488
320.542
330.332
340.452
350.424
360.0292
370.241
380.578
390.537
40.89
400.141
410.879
420.156
430.642
440.0298
450.313
460.526
470.0219
480.0357
490.354
50.768
500.954
510.808
520.0835
530.408
540.716
550.695
560.945
570.149
580.292
590.937
60.432
600.971
610.206
620.0754
630.438
640.127
650.998
660.249
670.957
680.379
690.538
70.294
700.097
710.0784
720.418
730.386
740.592
750.00767
760.0501
770.736
780.113
790.345
80.153
800.157
810.397
820.363
830.836
840.658
850.706
860.335
870.237
880.754
890.934
90.45
900.00892
910.85
920.591
930.851
940.287
950.00261
960.191
970.168
980.214
990.594



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11881


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104868 (anaplastic large cell lymphoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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