FF:10029-101E2: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	trachea, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10635
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	trachea
dev stage	59,72,78 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -20
catalog number	Cat:AM6000 Lot:0910061 -20
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005452

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10635		CAGE		DRX008753		DRR009625

Accession ID Hg19

Library id		BAM		CTSS
CNhs10635		DRZ001050		DRZ002435

Accession ID Hg38

Library id		BAM		CTSS
CNhs10635		DRZ012400		DRZ013785

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0947
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.00354
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.214
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.986
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0301
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0256
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0.0301
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.317
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0846
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0301
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.004
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0691
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.154
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0582
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0683
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.177
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0301
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0301
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0.0441
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0441
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0489
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.0301
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0846
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.106
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0474
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.554
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0301
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0582
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0301
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.216
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.291
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.268
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.508
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0846
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.114
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0321
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0582
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.425
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0582
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0846
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0582
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.177
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0582
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0119
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0301
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.286
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0967
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0301
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0301
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.0971
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0301
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0.0301
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0582
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.11
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.216
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0301
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.177
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.00806
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0846
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0.0301
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0053
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.0301
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.877
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0301
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0301
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0301
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10635

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.917
MA0003.1	MA0003.1	0.177
MA0004.1	MA0004.1	0.0843
MA0006.1	MA0006.1	0.0775
MA0007.1	MA0007.1	0.849
MA0009.1	MA0009.1	0.625
MA0014.1	MA0014.1	0.811
MA0017.1	MA0017.1	0.174
MA0018.2	MA0018.2	0.212
MA0019.1	MA0019.1	0.0205
MA0024.1	MA0024.1	0.0885
MA0025.1	MA0025.1	0.453
MA0027.1	MA0027.1	0.718
MA0028.1	MA0028.1	0.00388
MA0029.1	MA0029.1	0.15
MA0030.1	MA0030.1	2.70801e-6
MA0031.1	MA0031.1	0.00407
MA0035.2	MA0035.2	0.711
MA0038.1	MA0038.1	0.904
MA0039.2	MA0039.2	0.0322
MA0040.1	MA0040.1	0.605
MA0041.1	MA0041.1	0.0765
MA0042.1	MA0042.1	0.174
MA0043.1	MA0043.1	0.711
MA0046.1	MA0046.1	0.0451
MA0047.2	MA0047.2	6.62716e-8
MA0048.1	MA0048.1	0.0107
MA0050.1	MA0050.1	0.0452
MA0051.1	MA0051.1	0.044
MA0052.1	MA0052.1	3.49425e-4
MA0055.1	MA0055.1	0.00645
MA0057.1	MA0057.1	0.678
MA0058.1	MA0058.1	0.0382
MA0059.1	MA0059.1	0.0174
MA0060.1	MA0060.1	0.141
MA0061.1	MA0061.1	0.0525
MA0062.2	MA0062.2	0.00371
MA0065.2	MA0065.2	0.499
MA0066.1	MA0066.1	0.284
MA0067.1	MA0067.1	0.12
MA0068.1	MA0068.1	0.076
MA0069.1	MA0069.1	0.373
MA0070.1	MA0070.1	0.889
MA0071.1	MA0071.1	0.0264
MA0072.1	MA0072.1	0.048
MA0073.1	MA0073.1	0.985
MA0074.1	MA0074.1	0.665
MA0076.1	MA0076.1	0.00584
MA0077.1	MA0077.1	0.221
MA0078.1	MA0078.1	0.377
MA0079.2	MA0079.2	0.0719
MA0080.2	MA0080.2	0.00112
MA0081.1	MA0081.1	0.888
MA0083.1	MA0083.1	0.00903
MA0084.1	MA0084.1	0.696
MA0087.1	MA0087.1	0.0741
MA0088.1	MA0088.1	0.0168
MA0090.1	MA0090.1	0.205
MA0091.1	MA0091.1	0.541
MA0092.1	MA0092.1	0.884
MA0093.1	MA0093.1	0.102
MA0099.2	MA0099.2	8.01012e-4
MA0100.1	MA0100.1	0.749
MA0101.1	MA0101.1	0.248
MA0102.2	MA0102.2	0.0956
MA0103.1	MA0103.1	0.00684
MA0104.2	MA0104.2	0.0059
MA0105.1	MA0105.1	6.66095e-4
MA0106.1	MA0106.1	0.567
MA0107.1	MA0107.1	0.322
MA0108.2	MA0108.2	5.73181e-33
MA0111.1	MA0111.1	0.603
MA0112.2	MA0112.2	0.779
MA0113.1	MA0113.1	0.175
MA0114.1	MA0114.1	0.74
MA0115.1	MA0115.1	0.833
MA0116.1	MA0116.1	0.018
MA0117.1	MA0117.1	0.21
MA0119.1	MA0119.1	0.721
MA0122.1	MA0122.1	0.148
MA0124.1	MA0124.1	0.484
MA0125.1	MA0125.1	0.759
MA0131.1	MA0131.1	0.233
MA0135.1	MA0135.1	0.157
MA0136.1	MA0136.1	6.27306e-4
MA0137.2	MA0137.2	1.25788e-6
MA0138.2	MA0138.2	0.191
MA0139.1	MA0139.1	0.599
MA0140.1	MA0140.1	0.158
MA0141.1	MA0141.1	0.164
MA0142.1	MA0142.1	0.723
MA0143.1	MA0143.1	0.836
MA0144.1	MA0144.1	2.96159e-5
MA0145.1	MA0145.1	0.0138
MA0146.1	MA0146.1	0.928
MA0147.1	MA0147.1	0.00309
MA0148.1	MA0148.1	2.09833e-7
MA0149.1	MA0149.1	0.0585
MA0150.1	MA0150.1	0.0187
MA0152.1	MA0152.1	0.948
MA0153.1	MA0153.1	0.00117
MA0154.1	MA0154.1	0.892
MA0155.1	MA0155.1	0.603
MA0156.1	MA0156.1	0.0707
MA0157.1	MA0157.1	0.0892
MA0159.1	MA0159.1	0.854
MA0160.1	MA0160.1	0.228
MA0162.1	MA0162.1	0.709
MA0163.1	MA0163.1	4.84548e-5
MA0164.1	MA0164.1	0.293
MA0258.1	MA0258.1	0.431
MA0259.1	MA0259.1	0.0484

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10635

Novel motif	Logo	P-value
1	1	0.156
10	10	0.00786
100	100	0.199
101	101	0.91
102	102	0.89
103	103	0.687
104	104	0.74
105	105	0.476
106	106	0.541
107	107	0.12
108	108	0.985
109	109	0.756
11	11	0.342
110	110	0.364
111	111	0.0647
112	112	0.399
113	113	0.621
114	114	0.139
115	115	0.568
116	116	0.205
117	117	0.0869
118	118	0.0892
119	119	0.374
12	12	0.908
120	120	0.328
121	121	0.35
122	122	0.421
123	123	0.00333
124	124	0.479
125	125	0.454
126	126	0.126
127	127	0.674
128	128	0.446
129	129	0.347
13	13	0.3
130	130	0.611
131	131	0.513
132	132	0.164
133	133	0.00898
134	134	0.0074
135	135	0.0408
136	136	0.813
137	137	0.787
138	138	0.622
139	139	0.47
14	14	0.847
140	140	0.207
141	141	0.449
142	142	0.994
143	143	0.114
144	144	0.145
145	145	0.63
146	146	0.0955
147	147	0.452
148	148	0.496
149	149	0.748
15	15	0.228
150	150	0.945
151	151	0.668
152	152	0.037
153	153	0.509
154	154	0.485
155	155	0.739
156	156	0.513
157	157	0.619
158	158	0.15
159	159	0.731
16	16	0.792
160	160	0.43
161	161	0.195
162	162	0.964
163	163	0.602
164	164	0.0451
165	165	0.27
166	166	0.922
167	167	0.023
168	168	0.0284
169	169	0.339
17	17	0.903
18	18	0.049
19	19	0.698
2	2	0.0195
20	20	0.147
21	21	0.234
22	22	0.402
23	23	0.302
24	24	0.568
25	25	0.777
26	26	0.325
27	27	0.557
28	28	0.959
29	29	0.0692
3	3	0.394
30	30	0.00597
31	31	0.968
32	32	0.975
33	33	0.813
34	34	0.406
35	35	0.133
36	36	0.0283
37	37	0.504
38	38	0.944
39	39	0.322
4	4	0.287
40	40	0.324
41	41	0.253
42	42	0.579
43	43	0.366
44	44	0.941
45	45	0.0503
46	46	0.326
47	47	0.259
48	48	0.498
49	49	0.0652
5	5	0.722
50	50	0.273
51	51	0.528
52	52	0.103
53	53	0.942
54	54	0.986
55	55	0.874
56	56	0.929
57	57	0.101
58	58	0.868
59	59	0.279
6	6	0.328
60	60	0.344
61	61	0.674
62	62	0.631
63	63	0.621
64	64	0.511
65	65	0.896
66	66	0.0505
67	67	0.393
68	68	0.672
69	69	0.827
7	7	0.976
70	70	0.281
71	71	0.0681
72	72	0.484
73	73	0.732
74	74	0.324
75	75	0.0209
76	76	0.0103
77	77	0.012
78	78	0.0132
79	79	0.141
8	8	0.687
80	80	0.0221
81	81	0.217
82	82	0.723
83	83	0.345
84	84	0.839
85	85	0.702
86	86	0.959
87	87	0.618
88	88	0.977
89	89	0.365
9	9	0.233
90	90	0.0241
91	91	0.439
92	92	0.685
93	93	0.144
94	94	0.0309
95	95	0.508
96	96	0.636
97	97	0.835
98	98	0.149
99	99	0.31

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10635

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010029 human trachea - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010029 (human trachea - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005452
-|accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435
+|accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435;DRZ012400;DRZ013785
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.44!275.77!EHF;;chr1:201979703..201979721,+!p2@ELF3!2.21!161.16!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.18!150.26!ELF3;;chr17:74137321..74137337,-!p1@FOXJ1!2.01!102.42!FOXJ1;;chr6:34524093..34524135,-!p1@SPDEF!1.89!76.17!SPDEF;;chr6:126240442..126240459,+!p4@NCOA7!1.86!90.08!NCOA7;;chr22:29196433..29196445,-!p4@XBP1!1.71!55.73!XBP1;;chr17:80797886..80797906,-!p1@ZNF750!1.70!49.06!ZNF750;;chr3:181429704..181429722,+!p1@SOX2!1.63!41.24!SOX2;;chr4:57547454..57547469,-!p1@HOPX!1.62!40.24!HOPX;;chr22:38380543..38380569,-!p1@SOX10!1.61!39.81!SOX10;;chr20:62680984..62680999,-!p1@SOX18!1.60!50.85!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.58!37.44!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.57!36.51!FOXA1;;chr11:47400078..47400106,-!p1@SPI1!1.56!35.07!SPI1;;chr5:134369879..134369898,-!p2@PITX1!1.54!33.71!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.53!36.51!IRF6;;chr11:111249993..111250006,-!p1@POU2AF1!1.52!32.06!POU2AF1;;chr12:52445218..52445237,+!p1@NR4A1!1.50!367.36!NR4A1;;chr11:34642656..34642667,+!p2@EHF!1.47!28.62!EHF;;chr6:126240380..126240430,+!p2@NCOA7!1.45!69.28!NCOA7;;chr2:122042770..122042785,-!p1@TFCP2L1!1.45!27.40!TFCP2L1;;chr13:73633131..73633149,+!p1@KLF5!1.44!269.39!KLF5;;chr3:189507432..189507459,+!p1@TP63!1.43!25.96!TP63;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.25!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.40!24.24!ERG;;chr2:68592406..68592424,+!p1@PLEK!1.40!23.88!PLEK;;chr22:29196492..29196503,-!p3@XBP1!1.39!36.15!XBP1;;chr6:134210243..134210257,+!p1@TCF21!1.38!23.24!TCF21;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.73!IRF8;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.23!SOX17;;chr8:23540441..23540466,-!p1@NKX3-1!1.34!41.46!NKX3-1;;chr5:134369905..134369972,-!p1@PITX1!1.34!31.49!PITX1;;chr12:52437488..52437507,+!p2@NR4A1!1.34!20.94!NR4A1;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.74!PRRX1;;chr6:126240463..126240489,+!p6@NCOA7!1.31!21.66!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.30!19.15!IRX2;;chr6:391743..391759,+!p1@IRF4!1.30!19.08!IRF4;;chr17:7493405..7493419,-!p1@SOX15!1.30!19.08!SOX15;;chr1:151804244..151804310,-!p1@RORC!1.29!18.72!RORC;;chr11:129245526..129245553,+!p1@BARX2!1.29!18.36!BARX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.25!27.54!FOXQ1;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.64!GRHL2;;chr2:157189180..157189290,-!p1@NR4A2!1.24!84.56!NR4A2;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.30!TSHZ2;;chr5:121465234..121465263,+!p1@ZNF474!1.22!15.78!ZNF474;;chr14:37126765..37126799,+!p2@PAX9!1.19!14.34!PAX9;;chr7:97840743..97840786,+!p1@BHLHA15!1.17!13.63!BHLHA15;;chr1:40105299..40105326,-!p1@HEYL!1.17!13.63!HEYL;;chr6:168294352..168294371,+!p6@MLLT4!1.16!13.56!MLLT4;;chr11:113930425..113930471,+!p1@ZBTB16!1.15!18.79!ZBTB16;;chr11:34645791..34645836,+!p3@EHF!1.14!12.91!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.12!33.57!OSR1;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.13!TFAP2C;;chr6:126240356..126240379,+!p7@NCOA7!1.11!14.49!NCOA7;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.49!FOXF1;;chr6:34524049..34524089,-!p2@SPDEF!1.10!11.69!SPDEF;;chr11:34535297..34535317,-!p1@ELF5!1.10!11.55!ELF5;;chr14:61116183..61116208,-!p1@SIX1!1.08!42.24!SIX1;;chr15:101069113..101069169,-!p1@CERS3!1.08!10.97!CERS3;;chr2:63277948..63277974,+!p1@OTX1!1.08!10.90!OTX1;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.56!HEY1;;chr1:209979411..209979433,-!p2@IRF6!1.07!10.61!IRF6;;chr22:29196547..29196563,-!p2@XBP1!1.06!389.74!XBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.05!28.90!PRDM1;;chr3:181429741..181429767,+!p2@SOX2!1.05!10.11!SOX2;;chr11:113930291..113930339,+!p2@ZBTB16!1.04!16.35!ZBTB16;;chr3:21792682..21792720,-!p1@ZNF385D!1.04!9.97!ZNF385D;;chr9:102584159..102584174,+!p2@NR4A3!1.03!17.79!NR4A3;;chr7:15726296..15726315,-!p1@MEOX2!1.03!9.68!MEOX2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.03!9.68!ZBTB7C;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1230.75!CEBPD;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.34!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.69!TCF4;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.54!HIF3A;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr9:3525727..3525828,-!p2@RFX3!1.00!23.67!RFX3;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.69!MECOM;;chr19:54058073..54058088,+!p1@ZNF331!1.00!9.04!ZNF331;;chr5:71803177..71803255,-!p1@ZNF366!1.00!9.04!ZNF366;;chr12:96649259..96649290,+!p9@ELK3!0.99!8.82!ELK3;;chr22:19748231..19748317,+!p1@TBX1!0.99!8.68!TBX1;;chr1:158969752..158969780,+!p6@IFI16!0.98!15.21!IFI16;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.53!KDM5D;;chr11:47400062..47400077,-!p2@SPI1!0.97!8.39!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.96!10.83!BATF;;chr17:53342311..53342400,+!p1@HLF!0.96!9.47!HLF;;chr7:44143925..44143970,+!p1@AEBP1!0.95!181.53!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.48!TFAP2A;;chr1:158985493..158985535,+!p4@IFI16!0.95!12.12!IFI16;;chr7:15726243..15726293,-!p2@MEOX2!0.95!7.96!MEOX2;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.11!PRRX2;;chr20:39317868..39317884,-!p1@MAFB!0.93!91.59!MAFB;;chr6:10415276..10415341,-!p2@TFAP2A!0.93!9.32!TFAP2A;;chr4:26165074..26165110,+!p9@RBPJ!0.93!7.46!RBPJ;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.32!SOX9;;chr2:70142232..70142251,+!p1@MXD1!0.91!42.17!MXD1;;chr15:42749722..42749739,-!p2@ZFP106!0.91!13.13!ZFP106;;chr17:80797863..80797874,-!p2@ZNF750!0.91!7.10!ZNF750;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.10!SIX2;;chr9:14180778..14180808,-!p15@NFIB!0.91!7.10!NFIB;;chr2:46524897..46524911,+!p2@EPAS1!0.90!20.37!EPAS1;;chr9:132427883..132427951,+!p2@PRRX2!0.90!6.89!PRRX2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.69!ZNF385A;;chr9:14314566..14314618,-!p1@NFIB!0.88!83.20!NFIB;;chr7:113726357..113726443,+!p1@FOXP2!0.88!11.55!FOXP2;;chr11:34535332..34535347,-!p2@ELF5!0.88!6.67!ELF5;;chr8:25902876..25902936,-!p1@EBF2!0.88!6.53!EBF2;;chr3:187463179..187463201,-!p2@BCL6!0.87!28.19!BCL6;;chr2:145277882..145277967,-!p3@ZEB2!0.87!11.33!ZEB2;;chr20:50159198..50159299,-!p1@NFATC2!0.87!9.68!NFATC2;;chr2:10091815..10091864,+!p1@GRHL1!0.87!8.68!GRHL1;;chr19:6110458..6110472,-!p3@RFX2!0.87!6.45!RFX2;;chr6:19837592..19837621,+!p1@ID4!0.86!40.02!ID4;;chr17:6926362..6926377,+!p1@BCL6B!0.86!6.31!BCL6B;;chr11:128457446..128457461,-!p4@ETS1!0.86!6.31!ETS1;;chr5:121465268..121465281,+!p2@ZNF474!0.86!6.24!ZNF474;;chr3:168864315..168864339,-!p2@MECOM!0.85!10.26!MECOM;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.60!KLF15;;chr17:59529743..59529798,+!p1@TBX4!0.85!6.02!TBX4;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.19!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.82!IRX3;;chr7:19157248..19157268,-!p1@TWIST1!0.83!17.00!TWIST1;;chr6:106534230..106534254,+!p2@PRDM1!0.83!15.28!PRDM1;;chr1:24645832..24645853,+!p1@GRHL3!0.83!5.81!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.83!5.81!OVOL2;;chr1:24645921..24645973,+!p2@GRHL3!0.83!5.74!GRHL3;;chr1:25256756..25256774,-!p1@RUNX3!0.82!10.90!RUNX3;;chr6:126240490..126240501,+!p11@NCOA7!0.82!5.67!NCOA7;;chr1:214161272..214161322,+!p1@PROX1!0.81!7.96!PROX1;;chr1:61548225..61548299,+!p1@NFIA!0.80!74.59!NFIA;;chr13:41593425..41593480,-!p1@ELF1!0.80!36.43!ELF1;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.76!SOX15;;chr16:54320646..54320672,-!p2@IRX3!0.80!8.32!IRX3;;chr6:106546808..106546833,+!p3@PRDM1!0.80!6.81!PRDM1;;chr12:81101404..81101421,+!p1@MYF6!0.80!5.38!MYF6;;chr5:88178983..88179012,-!p1@MEF2C!0.79!43.75!MEF2C;;chr9:124991204..124991246,-!p1@LHX6!0.79!5.24!LHX6;;chr4:174451370..174451387,-!p1@HAND2!0.79!5.16!HAND2;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.68!FOXC1;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.09!DMRTA1;;chr16:52581025..52581072,-!p1@TOX3!0.78!5.09!TOX3;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.02!ZNF727;;chr2:231090433..231090469,+!p1@SP140!0.78!5.02!SP140;;chr14:105935396..105935413,+!p4@MTA1!0.78!5.02!MTA1;;chrX:106960285..106960299,-!p1@TSC22D3!0.77!145.17!TSC22D3;;chr19:45252008..45252024,+!p2@BCL3!0.77!17.29!BCL3;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.07!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.77!7.39!IRX5;;chr19:45260775..45260838,+!p5@BCL3!0.77!6.53!BCL3;;chr12:96649237..96649251,+!p15@ELK3!0.77!4.95!ELK3;;chr5:2751785..2751808,-!p2@IRX2!0.77!4.95!IRX2;;chr7:115670804..115670825,-!p1@TFEC!0.77!4.95!TFEC;;chr6:10413188..10413249,-!p7@TFAP2A!0.77!4.88!TFAP2A;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.88!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.88!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!0.77!4.88!ZNF385A;;chr3:25469724..25469773,+!p1@RARB!0.76!7.17!RARB;;chr2:63277978..63277995,+!p2@OTX1!0.76!4.81!OTX1;;chr6:168294324..168294335,+!p20@MLLT4!0.76!4.81!MLLT4;;chr9:1050331..1050363,+!p1@DMRT2!0.76!4.73!DMRT2;;chr14:38064590..38064606,-!p2@FOXA1!0.76!4.73!FOXA1;;chr20:51589133..51589159,+!p2@TSHZ2!0.76!4.73!TSHZ2;;chr19:16435625..16435682,+!p1@KLF2!0.75!165.03!KLF2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.90!ZC3H12A;;chr9:102584262..102584276,+!p1@NR4A3!0.75!11.12!NR4A3;;chr16:54320101..54320125,-!p4@IRX3!0.75!6.81!IRX3;;chr14:24025106..24025172,-!p2@ZFHX2!0.75!6.17!ZFHX2;;chr3:12330560..12330579,+!p1@PPARG!0.75!5.45!PPARG;;chr12:54785054..54785072,-!p4@ZNF385A!0.75!5.38!ZNF385A;;chr19:50922187..50922204,+!p1@SPIB!0.75!4.59!SPIB;;chr12:96588368..96588394,+!p3@ELK3!0.74!12.98!ELK3;;chr1:10754477..10754517,-!p1@CASZ1!0.74!7.82!CASZ1;;chr6:1389789..1389821,+!p1@FOXF2!0.74!6.38!FOXF2;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.95!AEBP1;;chr6:135502501..135502546,+!p1@MYB!0.74!5.52!MYB;;chr19:9811347..9811351,-!p1@ZNF812!0.74!4.52!ZNF812;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.52!ZFY;;chr10:63809013..63809041,+!p3@ARID5B!0.73!26.97!ARID5B;;chr16:79634624..79634642,-!p1@MAF!0.73!18.79!MAF;;chr1:61547894..61547968,+!p2@NFIA!0.73!13.84!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.73!10.83!NR1H3;;chr1:170633262..170633285,+!p3@PRRX1!0.73!5.16!PRRX1;;chr3:187463220..187463232,-!p3@BCL6!0.72!14.13!BCL6;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr16:52580953..52580992,-!p2@TOX3!0.72!4.23!TOX3;;chr3:71179699..71179744,-!p2@FOXP1!0.71!34.43!FOXP1;;chr1:61548069..61548102,+!p3@NFIA!0.71!10.8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10029-101E2
 |is_a=EFO:0002091;;FF:0010029
@@ Line 46: / Line 52: @@
 |library_id=CNhs10635
 |library_id_phase_based=2:CNhs10635
-|name="trachea, adult, pool1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10029
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10029
+|name=trachea, adult, pool1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs10635,LSID657,release008,COMPLETED"
+|profile_hcage=CNhs10635,LSID657,release008,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 76: / Line 87: @@
 |sample_company=Ambion
 |sample_description=
-|sample_dev_stage="59,72,78 years old adult"
+|sample_dev_stage=59,72,78 years old adult
 |sample_disease=normal
 |sample_donor(cell lot)=3 pool
@@ Line 90: / Line 101: @@
 |top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10029-101E2;search_select_hide=table117:FF:10029-101E2
 }}

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FF:10029-101E2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0