FF:10054-101G9: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	eye, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11762
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	36 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B210179
catalog number	Cat:RtHFN: Whole Eye
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004793

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11762		CAGE		DRX008655		DRR009527

Accession ID Hg19

Library id		BAM		CTSS
CNhs11762		DRZ000952		DRZ002337

Accession ID Hg38

Library id		BAM		CTSS
CNhs11762		DRZ012302		DRZ013687

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0885
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00394
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0442
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0885
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.0885
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.28
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0885
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0885
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.642
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00326
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0991
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0885
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0885
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.281
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.0885
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0575
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0885
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0885
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00372
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.162
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.372
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0885
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0885
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0.162
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.278
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.162
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0929
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.0885
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.226
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.542
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.28
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0885
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.162
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.051
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.28
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0442
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.495
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.286
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.724
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.513
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.607
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.162
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.118
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.118
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.162
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.162
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	1.057
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0.304
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.162
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.0885
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.759
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0559
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0885
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11762

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.5093e-4
MA0003.1	MA0003.1	0.693
MA0004.1	MA0004.1	0.0375
MA0006.1	MA0006.1	0.746
MA0007.1	MA0007.1	0.221
MA0009.1	MA0009.1	0.0831
MA0014.1	MA0014.1	0.263
MA0017.1	MA0017.1	0.0637
MA0018.2	MA0018.2	0.779
MA0019.1	MA0019.1	0.169
MA0024.1	MA0024.1	0.192
MA0025.1	MA0025.1	0.945
MA0027.1	MA0027.1	0.797
MA0028.1	MA0028.1	2.75725e-5
MA0029.1	MA0029.1	0.179
MA0030.1	MA0030.1	0.213
MA0031.1	MA0031.1	0.97
MA0035.2	MA0035.2	0.271
MA0038.1	MA0038.1	0.283
MA0039.2	MA0039.2	0.202
MA0040.1	MA0040.1	0.729
MA0041.1	MA0041.1	0.127
MA0042.1	MA0042.1	0.303
MA0043.1	MA0043.1	0.0594
MA0046.1	MA0046.1	0.0517
MA0047.2	MA0047.2	0.405
MA0048.1	MA0048.1	0.0798
MA0050.1	MA0050.1	5.00189e-5
MA0051.1	MA0051.1	0.00197
MA0052.1	MA0052.1	1.68873e-6
MA0055.1	MA0055.1	3.45726e-4
MA0057.1	MA0057.1	0.817
MA0058.1	MA0058.1	0.0317
MA0059.1	MA0059.1	0.0115
MA0060.1	MA0060.1	0.498
MA0061.1	MA0061.1	1.77866e-4
MA0062.2	MA0062.2	1.96295e-10
MA0065.2	MA0065.2	0.0194
MA0066.1	MA0066.1	0.186
MA0067.1	MA0067.1	0.463
MA0068.1	MA0068.1	0.0047
MA0069.1	MA0069.1	0.787
MA0070.1	MA0070.1	0.959
MA0071.1	MA0071.1	0.579
MA0072.1	MA0072.1	0.558
MA0073.1	MA0073.1	0.386
MA0074.1	MA0074.1	0.876
MA0076.1	MA0076.1	3.79255e-6
MA0077.1	MA0077.1	0.953
MA0078.1	MA0078.1	0.454
MA0079.2	MA0079.2	0.869
MA0080.2	MA0080.2	8.92928e-9
MA0081.1	MA0081.1	0.00557
MA0083.1	MA0083.1	0.692
MA0084.1	MA0084.1	0.414
MA0087.1	MA0087.1	0.235
MA0088.1	MA0088.1	0.0118
MA0090.1	MA0090.1	0.917
MA0091.1	MA0091.1	0.212
MA0092.1	MA0092.1	0.789
MA0093.1	MA0093.1	0.0434
MA0099.2	MA0099.2	1.01185e-20
MA0100.1	MA0100.1	0.0898
MA0101.1	MA0101.1	2.93549e-5
MA0102.2	MA0102.2	0.0857
MA0103.1	MA0103.1	0.722
MA0104.2	MA0104.2	0.0219
MA0105.1	MA0105.1	2.37162e-6
MA0106.1	MA0106.1	0.00793
MA0107.1	MA0107.1	7.01144e-5
MA0108.2	MA0108.2	2.20399e-21
MA0111.1	MA0111.1	0.693
MA0112.2	MA0112.2	0.0665
MA0113.1	MA0113.1	0.868
MA0114.1	MA0114.1	0.0131
MA0115.1	MA0115.1	0.121
MA0116.1	MA0116.1	0.0141
MA0117.1	MA0117.1	0.408
MA0119.1	MA0119.1	0.176
MA0122.1	MA0122.1	0.461
MA0124.1	MA0124.1	0.68
MA0125.1	MA0125.1	0.117
MA0131.1	MA0131.1	0.45
MA0135.1	MA0135.1	0.0569
MA0136.1	MA0136.1	1.4252e-13
MA0137.2	MA0137.2	0.978
MA0138.2	MA0138.2	0.00508
MA0139.1	MA0139.1	0.197
MA0140.1	MA0140.1	0.31
MA0141.1	MA0141.1	0.0882
MA0142.1	MA0142.1	0.064
MA0143.1	MA0143.1	0.785
MA0144.1	MA0144.1	0.529
MA0145.1	MA0145.1	0.716
MA0146.1	MA0146.1	0.00747
MA0147.1	MA0147.1	0.00623
MA0148.1	MA0148.1	0.414
MA0149.1	MA0149.1	0.00837
MA0150.1	MA0150.1	6.66294e-7
MA0152.1	MA0152.1	0.381
MA0153.1	MA0153.1	0.997
MA0154.1	MA0154.1	0.0783
MA0155.1	MA0155.1	0.515
MA0156.1	MA0156.1	1.14165e-12
MA0157.1	MA0157.1	0.287
MA0159.1	MA0159.1	0.103
MA0160.1	MA0160.1	0.0443
MA0162.1	MA0162.1	0.47
MA0163.1	MA0163.1	4.64551e-7
MA0164.1	MA0164.1	0.287
MA0258.1	MA0258.1	0.25
MA0259.1	MA0259.1	0.326

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11762

Novel motif	Logo	P-value
1	1	0.0354
10	10	0.0134
100	100	0.368
101	101	0.916
102	102	0.837
103	103	0.173
104	104	0.591
105	105	0.371
106	106	0.441
107	107	0.829
108	108	0.815
109	109	0.0126
11	11	0.036
110	110	0.0913
111	111	0.00667
112	112	0.846
113	113	0.0335
114	114	0.103
115	115	0.135
116	116	0.816
117	117	0.00254
118	118	0.0315
119	119	0.376
12	12	0.861
120	120	0.448
121	121	0.763
122	122	0.919
123	123	0.0107
124	124	0.444
125	125	0.69
126	126	0.112
127	127	0.629
128	128	0.83
129	129	0.324
13	13	0.00372
130	130	0.912
131	131	0.227
132	132	0.194
133	133	0.0493
134	134	0.476
135	135	0.819
136	136	0.046
137	137	0.494
138	138	0.334
139	139	0.596
14	14	0.748
140	140	0.4
141	141	0.145
142	142	0.83
143	143	0.00503
144	144	0.708
145	145	0.466
146	146	0.336
147	147	0.146
148	148	0.213
149	149	0.768
15	15	0.0116
150	150	0.304
151	151	0.702
152	152	0.122
153	153	0.795
154	154	0.768
155	155	0.119
156	156	0.792
157	157	0.274
158	158	0.215
159	159	0.961
16	16	0.661
160	160	0.523
161	161	0.153
162	162	0.349
163	163	0.759
164	164	0.00696
165	165	0.613
166	166	0.245
167	167	0.0351
168	168	0.937
169	169	0.00934
17	17	0.268
18	18	0.138
19	19	0.878
2	2	0.258
20	20	0.0327
21	21	0.183
22	22	0.446
23	23	0.731
24	24	0.185
25	25	0.406
26	26	0.00212
27	27	0.769
28	28	0.569
29	29	0.00289
3	3	0.0252
30	30	0.0559
31	31	0.759
32	32	0.0376
33	33	0.0408
34	34	0.466
35	35	0.672
36	36	0.114
37	37	0.0341
38	38	0.478
39	39	0.902
4	4	0.848
40	40	0.135
41	41	0.117
42	42	0.0815
43	43	0.175
44	44	0.934
45	45	0.708
46	46	0.148
47	47	0.0361
48	48	0.081
49	49	0.133
5	5	0.355
50	50	0.608
51	51	0.518
52	52	0.682
53	53	0.778
54	54	0.668
55	55	0.138
56	56	0.705
57	57	0.14
58	58	0.434
59	59	0.859
6	6	0.859
60	60	0.43
61	61	0.0104
62	62	0.378
63	63	0.246
64	64	0.472
65	65	0.742
66	66	0.0282
67	67	0.575
68	68	0.24
69	69	0.877
7	7	0.104
70	70	0.11
71	71	0.00604
72	72	0.308
73	73	0.0171
74	74	0.26
75	75	0.00242
76	76	0.039
77	77	0.773
78	78	0.0966
79	79	0.781
8	8	0.0586
80	80	0.736
81	81	0.498
82	82	0.918
83	83	0.927
84	84	0.423
85	85	0.676
86	86	0.158
87	87	0.00166
88	88	0.5
89	89	0.845
9	9	0.823
90	90	0.0801
91	91	0.787
92	92	0.803
93	93	0.921
94	94	0.0346
95	95	0.0129
96	96	0.43
97	97	0.793
98	98	0.256
99	99	0.371

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11762

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010054 human eye - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000970 (eye)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0002104 (visual system)
0004456 (entire sense organ system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010054 (human eye - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004793
-|accession_numbers=CAGE;DRX008655;DRR009527;DRZ000952;DRZ002337
+|accession_numbers=CAGE;DRX008655;DRR009527;DRZ000952;DRZ002337;DRZ012302;DRZ013687
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0002104,UBERON:0004456
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.93!858.05!CRX;;chr14:24553835..24553850,-!p1@NRL!2.85!706.64!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.24!171.75!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.09!121.58!NEUROD1;;chr9:77112244..77112262,+!p1@RORB!2.07!129.26!RORB;;chr12:54779511..54779577,-!p5@ZNF385A!2.01!102.37!ZNF385A;;chr19:3772220..3772236,-!p1@RAX2!1.92!82.26!RAX2;;chr11:31839488..31839515,-!p3@PAX6!1.91!80.45!PAX6;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.35!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.82!65.08!HOPX;;chr1:216896752..216896778,-!p1@ESRRG!1.81!63.27!ESRRG;;chr18:56940611..56940660,-!p1@RAX!1.79!61.24!RAX;;chr17:53342311..53342400,+!p1@HLF!1.78!67.34!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.78!59.43!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.77!58.08!EHF;;chr14:76842457..76842494,+!p1@ESRRB!1.74!53.33!ESRRB;;chr7:100065686..100065701,-!p2@TSC22D4!1.72!51.75!TSC22D4;;chr1:2461692..2461710,-!p1@HES5!1.67!45.87!HES5;;chr15:72102881..72102925,+!p1@NR2E3!1.66!44.97!NR2E3;;chr20:62680984..62680999,-!p1@SOX18!1.64!56.04!SOX18;;chr15:42749722..42749739,-!p2@ZFP106!1.59!67.12!ZFP106;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.13!BHLHE41;;chr13:72441315..72441454,-!p1@DACH1!1.56!68.70!DACH1;;chr4:81118647..81118666,+!p1@PRDM8!1.56!46.10!PRDM8;;chr1:214161272..214161322,+!p1@PROX1!1.54!47.00!PROX1;;chr4:8873545..8873583,-!p1@HMX1!1.53!32.77!HMX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!32.32!ZBED1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.50!30.73!PEG3;;chr19:37837218..37837237,+!p5@HKR1!1.49!29.83!HKR1;;chr11:31825588..31825613,-!p8@PAX6!1.47!28.70!PAX6;;chr22:38380543..38380569,-!p1@SOX10!1.47!28.47!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.02!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.12!HEYL;;chr19:46801639..46801699,+!p1@HIF3A!1.44!26.44!HIF3A;;chr12:55413751..55413765,+!p1@NEUROD4!1.43!25.76!NEUROD4;;chr3:52002194..52002250,-!p5@PCBP4!1.42!25.54!PCBP4;;chr9:126774018..126774055,+!p1@LHX2!1.42!25.31!LHX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.57!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!1.39!311.85!PCBP4;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.93!ZNF385A;;chr2:180726040..180726052,-!p2@ZNF385B!1.39!23.73!ZNF385B;;chr2:45168834..45168847,+!p2@SIX3!1.39!23.28!SIX3;;chr14:74706150..74706155,+!p1@VSX2!1.39!23.28!VSX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.38!23.05!TFAP2B;;chr17:38256822..38256851,-!p1@NR1D1!1.37!168.81!NR1D1;;chr3:69985734..69985749,+!p2@MITF!1.37!22.37!MITF;;chr2:45168875..45168916,+!p1@SIX3!1.36!21.69!SIX3;;chr14:24551143..24551178,-!p6@NRL!1.36!21.69!NRL;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.67!TFAP2A;;chr11:31832862..31832884,-!p2@PAX6!1.33!20.34!PAX6;;chr20:25062773..25062779,-!p3@VSX1!1.33!20.34!VSX1;;chr1:165414325..165414369,-!p1@RXRG!1.32!20.11!RXRG;;chr4:111544219..111544240,-!p1@PITX2!1.32!20.11!PITX2;;chr11:129245526..129245553,+!p1@BARX2!1.32!20.11!BARX2;;chr5:50679228..50679288,+!p1@ISL1!1.32!19.89!ISL1;;chr12:26277956..26277980,-!p1@BHLHE41!1.31!68.25!BHLHE41;;chr17:38256799..38256815,-!p3@NR1D1!1.31!34.58!NR1D1;;chr19:3772263..3772274,-!p2@RAX2!1.31!19.43!RAX2;;chr5:134369879..134369898,-!p2@PITX1!1.30!18.98!PITX1;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.53!PAX6;;chr17:7492684..7492778,-!p2@SOX15!1.27!37.06!SOX15;;chrX:591524..591527,+!p1@SHOX!1.26!17.17!SHOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.44!FOXQ1;;chr11:113930425..113930471,+!p1@ZBTB16!1.24!23.50!ZBTB16;;chr3:193853927..193853944,+!p1@HES1!1.23!509.81!HES1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.55!EBF1;;chr6:108487289..108487302,+!p1@NR2E1!1.23!16.04!NR2E1;;chr2:63277948..63277974,+!p1@OTX1!1.23!15.82!OTX1;;chr4:111558135..111558198,-!p2@PITX2!1.23!15.82!PITX2;;chr11:8040739..8040815,+!p4@TUB!1.23!15.82!TUB;;chr14:60975883..60975911,+!p1@SIX6!1.23!15.82!SIX6;;chr12:81101404..81101421,+!p1@MYF6!1.21!15.37!MYF6;;chr9:77230443..77230455,+!p6@RORB!1.21!15.37!RORB;;chr2:45169193..45169219,+!p3@SIX3!1.21!15.37!SIX3;;chr21:47063625..47063658,+!p1@PCBP3!1.19!63.05!PCBP3;;chr12:52437488..52437507,+!p2@NR4A1!1.19!14.46!NR4A1;;chr17:80797886..80797906,-!p1@ZNF750!1.19!14.46!ZNF750;;chr18:56940663..56940691,-!p2@RAX!1.19!14.46!RAX;;chr16:79634624..79634642,-!p1@MAF!1.18!55.37!MAF;;chr7:44143925..44143970,+!p1@AEBP1!1.17!301.01!AEBP1;;chr6:1389789..1389821,+!p1@FOXF2!1.17!18.76!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.76!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!1.16!168.58!NR4A1;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.10!DPF3;;chr9:126773880..126773895,+!p2@LHX2!1.16!13.56!LHX2;;chr12:53848759..53848774,+!p30@PCBP2!1.15!13.11!PCBP2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.15!13.11!SMARCE1;;chr20:30433396..30433414,-!p1@FOXS1!1.14!12.88!FOXS1;;chr21:39870339..39870443,-!p1@ERG!1.14!12.88!ERG;;chr3:25470156..25470227,+!p2@RARB!1.14!12.88!RARB;;chr3:51994798..51994819,-!p17@PCBP4!1.14!12.88!PCBP4;;chr8:55370487..55370503,+!p1@SOX17!1.14!12.65!SOX17;;chr2:145277882..145277967,-!p3@ZEB2!1.13!21.47!ZEB2;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10054-101G9
 |is_a=EFO:0002091;;FF:0010054
@@ Line 45: / Line 51: @@
 |library_id=CNhs11762
 |library_id_phase_based=2:CNhs11762
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10054
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10054
 |name=eye, fetal, donor1
 |namespace=FANTOM5
@@ Line 52: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10054-101G9;search_select_hide=table117:FF:10054-101G9
 }}

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FF:10054-101G9: Difference between revisions

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Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0