FF:10188-103D8: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	cerebral meninges, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12840
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	66
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234043-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005072

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12840		CAGE		DRX008634		DRR009506

Accession ID Hg19

Library id		BAM		CTSS
CNhs12840		DRZ000931		DRZ002316

Accession ID Hg38

Library id		BAM		CTSS
CNhs12840		DRZ012281		DRZ013666

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.274
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.355
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0861
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.275
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.404
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.0891
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.22
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.158
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.274
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.0861
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0861
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0242
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.343
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.244
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0861
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0861
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.594
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0861
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0861
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.365
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0942
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.44
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.274
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0861
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0683
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.365
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.365
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0861
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.553
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.547
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.854
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0861
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.0861
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0861
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.633
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.22
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.158
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.22
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0.0861
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12840

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0025
MA0003.1	MA0003.1	0.357
MA0004.1	MA0004.1	0.383
MA0006.1	MA0006.1	0.499
MA0007.1	MA0007.1	0.316
MA0009.1	MA0009.1	0.101
MA0014.1	MA0014.1	0.569
MA0017.1	MA0017.1	0.00693
MA0018.2	MA0018.2	0.0194
MA0019.1	MA0019.1	0.381
MA0024.1	MA0024.1	0.855
MA0025.1	MA0025.1	0.0731
MA0027.1	MA0027.1	0.545
MA0028.1	MA0028.1	0.0345
MA0029.1	MA0029.1	0.0132
MA0030.1	MA0030.1	0.345
MA0031.1	MA0031.1	0.742
MA0035.2	MA0035.2	0.0582
MA0038.1	MA0038.1	0.168
MA0039.2	MA0039.2	0.192
MA0040.1	MA0040.1	0.482
MA0041.1	MA0041.1	0.197
MA0042.1	MA0042.1	0.603
MA0043.1	MA0043.1	0.312
MA0046.1	MA0046.1	0.146
MA0047.2	MA0047.2	0.123
MA0048.1	MA0048.1	0.0924
MA0050.1	MA0050.1	0.00417
MA0051.1	MA0051.1	0.154
MA0052.1	MA0052.1	0.0384
MA0055.1	MA0055.1	0.00291
MA0057.1	MA0057.1	0.975
MA0058.1	MA0058.1	0.286
MA0059.1	MA0059.1	0.0511
MA0060.1	MA0060.1	0.501
MA0061.1	MA0061.1	0.0104
MA0062.2	MA0062.2	0.00212
MA0065.2	MA0065.2	7.57239e-4
MA0066.1	MA0066.1	0.0487
MA0067.1	MA0067.1	0.68
MA0068.1	MA0068.1	0.017
MA0069.1	MA0069.1	0.553
MA0070.1	MA0070.1	0.699
MA0071.1	MA0071.1	0.0467
MA0072.1	MA0072.1	0.33
MA0073.1	MA0073.1	0.635
MA0074.1	MA0074.1	0.279
MA0076.1	MA0076.1	0.0705
MA0077.1	MA0077.1	0.718
MA0078.1	MA0078.1	0.592
MA0079.2	MA0079.2	0.392
MA0080.2	MA0080.2	3.85384e-9
MA0081.1	MA0081.1	0.0194
MA0083.1	MA0083.1	0.586
MA0084.1	MA0084.1	0.901
MA0087.1	MA0087.1	0.384
MA0088.1	MA0088.1	0.0531
MA0090.1	MA0090.1	0.64
MA0091.1	MA0091.1	0.78
MA0092.1	MA0092.1	0.47
MA0093.1	MA0093.1	0.398
MA0099.2	MA0099.2	9.94199e-11
MA0100.1	MA0100.1	0.612
MA0101.1	MA0101.1	0.00762
MA0102.2	MA0102.2	0.275
MA0103.1	MA0103.1	0.295
MA0104.2	MA0104.2	0.297
MA0105.1	MA0105.1	6.73866e-4
MA0106.1	MA0106.1	0.0327
MA0107.1	MA0107.1	0.0142
MA0108.2	MA0108.2	5.11312e-4
MA0111.1	MA0111.1	0.319
MA0112.2	MA0112.2	0.00102
MA0113.1	MA0113.1	0.283
MA0114.1	MA0114.1	0.00415
MA0115.1	MA0115.1	0.223
MA0116.1	MA0116.1	0.00418
MA0117.1	MA0117.1	0.963
MA0119.1	MA0119.1	0.0404
MA0122.1	MA0122.1	0.874
MA0124.1	MA0124.1	0.95
MA0125.1	MA0125.1	0.243
MA0131.1	MA0131.1	0.807
MA0135.1	MA0135.1	7.6368e-4
MA0136.1	MA0136.1	8.38526e-13
MA0137.2	MA0137.2	0.883
MA0138.2	MA0138.2	0.143
MA0139.1	MA0139.1	0.382
MA0140.1	MA0140.1	0.00989
MA0141.1	MA0141.1	0.0173
MA0142.1	MA0142.1	0.671
MA0143.1	MA0143.1	0.896
MA0144.1	MA0144.1	0.458
MA0145.1	MA0145.1	0.246
MA0146.1	MA0146.1	0.00608
MA0147.1	MA0147.1	0.204
MA0148.1	MA0148.1	0.101
MA0149.1	MA0149.1	0.0192
MA0150.1	MA0150.1	0.00156
MA0152.1	MA0152.1	0.493
MA0153.1	MA0153.1	0.706
MA0154.1	MA0154.1	0.0409
MA0155.1	MA0155.1	0.712
MA0156.1	MA0156.1	2.23484e-7
MA0157.1	MA0157.1	0.505
MA0159.1	MA0159.1	0.00637
MA0160.1	MA0160.1	0.0375
MA0162.1	MA0162.1	0.138
MA0163.1	MA0163.1	2.13771e-6
MA0164.1	MA0164.1	0.639
MA0258.1	MA0258.1	0.00687
MA0259.1	MA0259.1	0.634

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12840

Novel motif	Logo	P-value
1	1	0.0317
10	10	0.0241
100	100	0.288
101	101	0.955
102	102	0.901
103	103	0.244
104	104	0.175
105	105	0.171
106	106	0.119
107	107	0.217
108	108	0.871
109	109	0.0144
11	11	0.0143
110	110	0.038
111	111	0.0331
112	112	0.628
113	113	0.85
114	114	0.066
115	115	0.71
116	116	0.285
117	117	0.00642
118	118	0.0862
119	119	0.114
12	12	0.705
120	120	0.129
121	121	0.41
122	122	0.575
123	123	0.0772
124	124	0.19
125	125	0.303
126	126	0.0728
127	127	0.311
128	128	0.308
129	129	0.488
13	13	0.00191
130	130	0.611
131	131	0.0476
132	132	0.84
133	133	4.30079e-4
134	134	0.405
135	135	0.435
136	136	0.0549
137	137	0.642
138	138	0.712
139	139	0.141
14	14	0.696
140	140	0.433
141	141	0.364
142	142	0.97
143	143	0.0298
144	144	0.877
145	145	0.0655
146	146	0.454
147	147	0.961
148	148	0.117
149	149	0.344
15	15	0.0726
150	150	0.208
151	151	0.552
152	152	0.182
153	153	0.808
154	154	0.857
155	155	0.242
156	156	0.39
157	157	0.555
158	158	0.305
159	159	0.809
16	16	0.105
160	160	0.21
161	161	0.178
162	162	0.986
163	163	0.896
164	164	0.0166
165	165	0.0735
166	166	0.763
167	167	0.227
168	168	0.533
169	169	0.0071
17	17	0.182
18	18	0.315
19	19	0.211
2	2	0.98
20	20	0.101
21	21	0.0404
22	22	0.24
23	23	0.505
24	24	0.103
25	25	0.514
26	26	6.89302e-5
27	27	0.977
28	28	0.633
29	29	0.0107
3	3	0.0193
30	30	0.39
31	31	0.891
32	32	0.08
33	33	0.0856
34	34	0.744
35	35	0.495
36	36	0.048
37	37	0.0413
38	38	0.286
39	39	0.371
4	4	0.613
40	40	0.0231
41	41	0.472
42	42	0.136
43	43	0.0969
44	44	0.239
45	45	0.877
46	46	0.0626
47	47	0.0332
48	48	0.0309
49	49	0.0869
5	5	0.316
50	50	0.349
51	51	0.494
52	52	0.775
53	53	0.676
54	54	0.376
55	55	0.354
56	56	0.416
57	57	0.176
58	58	0.338
59	59	0.195
6	6	0.599
60	60	0.127
61	61	0.0516
62	62	0.202
63	63	0.131
64	64	0.22
65	65	0.298
66	66	0.21
67	67	0.279
68	68	0.134
69	69	0.479
7	7	0.0596
70	70	0.0264
71	71	0.00867
72	72	0.535
73	73	0.0512
74	74	0.944
75	75	0.0228
76	76	0.323
77	77	0.328
78	78	0.00179
79	79	0.1
8	8	0.0838
80	80	0.923
81	81	0.621
82	82	0.546
83	83	0.383
84	84	0.766
85	85	0.31
86	86	0.231
87	87	0.031
88	88	0.849
89	89	0.686
9	9	0.657
90	90	0.047
91	91	0.337
92	92	0.459
93	93	0.788
94	94	0.0511
95	95	0.0329
96	96	0.689
97	97	0.866
98	98	0.272
99	99	0.677

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12840

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010188 human cerebral meninges - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002360 (meninx)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000094 (membrane organ)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0010743 (meningeal cluster)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010188 (human cerebral meninges - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005072
-|accession_numbers=CAGE;DRX008634;DRR009506;DRZ000931;DRZ002316
+|accession_numbers=CAGE;DRX008634;DRR009506;DRZ000931;DRZ002316;DRZ012281;DRZ013666
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002360,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000094,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0010743
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.58!377.34!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.37!231.01!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.15!139.53!OLIG1;;chr2:73520667..73520683,-!p1@EGR4!2.15!139.53!EGR4;;chr4:57547454..57547469,-!p1@HOPX!2.05!111.67!HOPX;;chr17:53342311..53342400,+!p1@HLF!1.93!95.65!HLF;;chr9:77112244..77112262,+!p1@RORB!1.91!89.29!RORB;;chr11:66188503..66188511,+!p1@NPAS4!1.90!77.66!NPAS4;;chr17:37764128..37764258,-!p1@NEUROD2!1.82!65.82!NEUROD2;;chr9:114287433..114287513,+!p1@ZNF483!1.77!145.67!ZNF483;;chr15:80733570..80733659,+!p2@ARNT2!1.77!58.36!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.76!56.38!SOX2;;chr15:80735246..80735321,+!p3@ARNT2!1.72!51.34!ARNT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.68!46.51!KCNIP3;;chr14:29235961..29236008,+!p1@FOXG1!1.67!46.29!FOXG1;;chr22:38380543..38380569,-!p1@SOX10!1.66!44.54!SOX10;;chr10:64134120..64134183,+!p1@ZNF365!1.65!52.21!ZNF365;;chr11:8102846..8102892,+!p1@TUB!1.63!57.92!TUB;;chr12:52437488..52437507,+!p2@NR4A1!1.63!41.46!NR4A1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.63!41.24!SMARCE1;;chr12:52445218..52445237,+!p1@NR4A1!1.55!417.05!NR4A1;;chr5:88178983..88179012,-!p1@MEF2C!1.55!253.61!MEF2C;;chr4:57522166..57522260,-!p2@HOPX!1.55!39.71!HOPX;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.88!POU3F3;;chr2:162272785..162272836,+!p1@TBR1!1.51!31.37!TBR1;;chr8:40755333..40755352,-!p1@ZMAT4!1.50!30.93!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.50!30.49!OLIG2;;chr3:147127142..147127168,+!p1@ZIC1!1.50!30.49!ZIC1;;chr7:31380292..31380351,-!p1@NEUROD6!1.49!30.06!NEUROD6;;chr15:80696703..80696754,+!p1@ARNT2!1.48!38.17!ARNT2;;chr1:157069590..157069607,-!p1@ETV3L!1.48!29.18!ETV3L;;chrX:25034067..25034088,-!p1@ARX!1.47!28.74!ARX;;chr8:22550982..22550999,-!p1@EGR3!1.45!74.59!EGR3;;chr19:57352109..57352153,-!p2@ZIM2!1.44!26.33!ZIM2;;chr4:81118647..81118666,+!p1@PRDM8!1.43!34.22!PRDM8;;chr21:34442540..34442560,+!p2@OLIG1!1.43!25.67!OLIG1;;chr19:13135582..13135600,+!p3@NFIX!1.42!25.01!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.40!31.59!SOX18;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!34.00!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.39!23.47!MYT1L;;chr1:2461692..2461710,-!p1@HES5!1.39!23.47!HES5;;chr22:41763452..41763466,+!p2@TEF!1.38!23.04!TEF;;chr3:147127177..147127194,+!p2@ZIC1!1.37!22.60!ZIC1;;chr3:181429741..181429767,+!p2@SOX2!1.37!22.60!SOX2;;chr19:54058073..54058088,+!p1@ZNF331!1.37!22.38!ZNF331;;chr9:126774018..126774055,+!p1@LHX2!1.36!21.94!LHX2;;chr1:244214577..244214593,+!p1@ZNF238!1.35!21.50!ZNF238;;chr18:53070846..53070902,-!p6@TCF4!1.34!20.84!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.33!80.30!MEF2C;;chr12:26277956..26277980,-!p1@BHLHE41!1.33!71.74!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.42!BHLHE41;;chr2:157189180..157189290,-!p1@NR4A2!1.31!99.16!NR4A2;;chr12:54779511..54779577,-!p5@ZNF385A!1.31!19.31!ZNF385A;;chr19:54041669..54041697,+!p2@ZNF331!1.31!19.31!ZNF331;;chr11:113930425..113930471,+!p1@ZBTB16!1.29!26.55!ZBTB16;;chr6:126112039..126112062,+!p8@NCOA7!1.29!22.16!NCOA7;;chr2:182545234..182545252,-!p1@NEUROD1!1.29!18.43!NEUROD1;;chr6:19837592..19837621,+!p1@ID4!1.28!109.25!ID4;;chr19:38720294..38720348,-!p1@DPF1!1.28!22.60!DPF1;;chr10:64576105..64576133,-!p1@EGR2!1.26!34.66!EGR2;;chr17:7492684..7492778,-!p2@SOX15!1.25!34.88!SOX15;;chr8:80679993..80680011,-!p1@HEY1!1.25!24.35!HEY1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.67!KCNIP3;;chr11:61520075..61520136,+!p1@C11orf9!1.24!34.22!C11orf9;;chr3:24536253..24536328,-!p1@THRB!1.24!30.93!THRB;;chr2:145277882..145277967,-!p3@ZEB2!1.24!28.30!ZEB2;;chr14:29236269..29236285,+!p3@FOXG1!1.23!16.02!FOXG1;;chr11:125034640..125034655,+!p1@PKNOX2!1.23!15.80!PKNOX2;;chr19:13135386..13135435,+!p4@NFIX!1.23!15.80!NFIX;;chr12:54785074..54785122,-!p2@ZNF385A!1.22!23.91!ZNF385A;;chr5:92920256..92920282,+!p7@NR2F1!1.22!19.09!NR2F1;;chr1:40105299..40105326,-!p1@HEYL!1.21!15.36!HEYL;;chr9:102584159..102584174,+!p2@NR4A3!1.20!26.55!NR4A3;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.92!DACH2;;chr13:100634031..100634045,+!p1@ZIC2!1.18!14.26!ZIC2;;chr14:29234581..29234601,+!p2@FOXG1!1.18!14.26!FOXG1;;chr4:57522598..57522664,-!p3@HOPX!1.18!14.04!HOPX;;chr12:55413751..55413765,+!p1@NEUROD4!1.16!13.60!NEUROD4;;chr6:143266185..143266238,-!p2@HIVEP2!1.15!17.99!HIVEP2;;chr14:33403881..33403924,+!p1@NPAS3!1.15!13.16!NPAS3;;chr17:38219209..38219230,+!p1@THRA!1.14!167.39!THRA;;chr10:38265517..38265591,-!p1@ZNF25!1.14!50.02!ZNF25;;chrX:118739835..118739862,-!p1@NKRF!1.14!14.26!NKRF;;chr10:119302232..119302265,+!p1@EMX2!1.14!12.94!EMX2;;chr2:60781201..60781258,-!p3@BCL11A!1.14!12.94!BCL11A;;chr16:1031762..1031781,+!p1@SOX8!1.14!12.94!SOX8;;chr9:77112225..77112238,+!p2@RORB!1.14!12.72!RORB;;chr9:102584262..102584276,+!p1@NR4A3!1.13!27.86!NR4A3;;chr4:57522674..57522699,-!p5@HOPX!1.13!12.50!HOPX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.12!12.29!POU3F3;;chr10:35484053..35484076,+!p1@CREM!1.10!29.18!CREM;;chr10:134599649..134599653,-!p1@NKX6-2!1.10!11.63!NKX6-2;;chr19:46801639..46801699,+!p1@HIF3A!1.10!11.63!HIF3A;;chr8:22550530..22550609,-!p2@EGR3!1.10!11.63!EGR3;;chr16:79634624..79634642,-!p1@MAF!1.09!44.32!MAF;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.19!KLF13;;chr12:106976678..106976708,+!p2@RFX4!1.09!11.19!RFX4;;chr13:45010939..45011033,-!p1@TSC22D1!1.07!709.27!TSC22D1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.55!FOXC2;;chr12:103351444..103351461,+!p1@ASCL1!1.06!10.53!ASCL1;;chr10:48355030..48355090,+!p1@ZNF488!1.05!13.16!ZNF488;;chr11:8102819..8102845,+!p3@TUB!1.05!12.72!TUB;;chr1:151032860..151032918,+!p1@MLLT11!1.04!118.69!MLLT11;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.09!KDM5D;;chr4:57522513..57522548,-!p4@HOPX!1.04!9.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.04!9.87!ZNF365;;chr11:31832658..31832681,-!p1@PAX6!1.04!9.87!PAX6;;chr6:126070769..126070801,+!p1@HEY2!1.03!11.19!HEY2;;chr8:30890810..30890880,-!p1@PURG!1.03!9.65!PURG;;chr12:106976774..106976788,+!p1@RFX4!1.03!9.65!RFX4;;chr19:45971246..45971265,+!p1@FOSB!1.01!177.04!FOSB;;chr6:85474299..85474324,-!p1@TBX18!1.01!16.67!TBX18;;chr11:31832862..31832884,-!p2@PAX6!1.01!9.21!PAX6;;chr2:19558373..19558392,-!p1@OSR1!1.00!25.01!OSR1;;chr1:244219775..244219893,+!p2@ZNF238!1.00!12.50!ZNF238;;chr7:63505799..63505904,+!p1@ZNF727!1.00!8.99!ZNF727;;chr8:145560371..145560449,-!p1@SCRT1!1.00!8.99!SCRT1;;chrX:106959661..106959763,-!p4@TSC22D3!0.99!26.11!TSC22D3;;chr2:166428839..166428859,+!p2@CSRNP3!0.99!8.78!CSRNP3;;chr10:64134045..64134083,+!p3@ZNF365!0.99!8.78!ZNF365;;chr17:38256822..38256851,-!p1@NR1D1!0.98!68.67!NR1D1;;chr1:151032782..151032801,+!p4@MLLT11!0.98!17.55!MLLT11;;chr8:145560111..145560165,-!p2@SCRT1!0.98!8.56!SCRT1;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.39!SATB1;;chr5:88179230..88179270,-!p4@MEF2C!0.97!16.45!MEF2C;;chr19:38085768..38085821,+!p1@ZNF540!0.97!12.72!ZNF540;;chr8:80680024..80680046,-!p2@HEY1!0.97!9.43!HEY1;;chr19:48325184..48325211,+!p1@CRX!0.97!8.34!CRX;;chr14:58798013..58798071,+!p2@ARID4A!0.97!8.34!ARID4A;;chr1:151032922..151032951,+!p2@MLLT11!0.96!13.60!MLLT11;;chr12:26277929..26277955,-!p3@BHLHE41!0.96!11.63!BHLHE41;;chr3:126076242..126076257,-!p1@KLF15!0.96!10.09!KLF15;;chr5:134871645..134871660,-!p1@NEUROG1!0.96!8.12!NEUROG1;;chr2:42721205..42721307,+!p4@MTA3!0.95!7.90!MTA3;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!7.90!ZNF385D;;chr12:103352277..103352324,+!p2@ASCL1!0.95!7.90!ASCL1;;chr15:80696410..80696477,+!p6@ARNT2!0.95!7.90!ARNT2;;chr15:80696666..80696700,+!p4@ARNT2!0.95!7.90!ARNT2;;chr9:126773880..126773895,+!p2@LHX2!0.94!7.68!LHX2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.94!7.68!ZSCAN1;;chr21:39870339..39870443,-!p1@ERG!0.94!7.68!ERG;;chr14:57277178..57277203,-!p1@OTX2!0.94!7.68!OTX2;;chr2:180726254..180726275,-!p4@ZNF385B!0.94!7.68!ZNF385B;;chr14:75745523..75745537,+!p1@FOS!0.93!924.27!FOS;;chr22:41777927..41777971,+!p1@TEF!0.93!64.50!TEF;;chr2:162272889..162272915,+!p2@TBR1!0.93!7.46!TBR1;;chr2:239148671..239148686,-!p1@HES6!0.92!27.64!HES6;;chr2:60780607..60780624,-!p2@BCL11A!0.92!23.25!BCL11A;;chr16:79634595..79634620,-!p2@MAF!0.92!13.82!MAF;;chr12:12764995..12765017,+!p3@CREBL2!0.92!10.53!CREBL2;;chr19:57183114..57183145,-!p1@ZNF835!0.92!8.34!ZNF835;;chr2:172949484..172949522,+!p1@DLX1!0.92!7.24!DLX1;;chrX:118739782..118739829,-!p2@NKRF!0.92!7.24!NKRF;;chr10:35484090..35484104,+!p6@CREM!0.92!7.24!CREM;;chr4:4861385..4861398,+!p1@MSX1!0.91!21.94!MSX1;;chr19:53636125..53636178,-!p1@ZNF415!0.91!20.84!ZNF415;;chr1:214161272..214161322,+!p1@PROX1!0.91!10.31!PROX1;;chr17:38219143..38219154,+!p2@THRA!0.90!25.89!THRA;;chr17:38219184..38219195,+!p3@THRA!0.90!14.26!THRA;;chr5:88179195..88179224,-!p3@MEF2C!0.90!11.19!MEF2C;;chr8:80680078..80680101,-!p3@HEY1!0.90!7.68!HEY1;;chr17:74137321..74137337,-!p1@FOXJ1!0.90!7.02!FOXJ1;;chr9:126774058..126774081,+!p3@LHX2!0.90!7.02!LHX2;;chr2:192015701..192015743,-!p1@STAT4!0.89!9.43!STAT4;;chr10:111987079..111987115,+!p3@MXI1!0.89!9.43!MXI1;;chr11:8040739..8040815,+!p4@TUB!0.89!6.80!TUB;;chr3:24536332..24536358,-!p2@THRB!0.89!6.80!THRB;;chr19:13135566..13135577,+!p9@NFIX!0.89!6.80!NFIX;;chr6:126112074..126112144,+!p1@NCOA7!0.88!93.24!NCOA7;;chr1:61548069..61548102,+!p3@NFIA!0.88!16.67!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!10.97!ZBTB16;;chr11:125034605..125034636,+!p2@PKNOX2!0.88!6.58!PKNOX2;;chr20:30433396..30433414,-!p1@FOXS1!0.88!6.58!FOXS1;;chrX:102000987..102001029,+!p3@BHLHB9!0.88!6.58!BHLHB9;;chr16:51185318..51185348,-!p2@SALL1!0.87!6.36!SALL1;;chr8:53322304..53322340,-!p1@ST18!0.87!6.36!ST18;;chr2:60780753..60780800,-!p1@BCL11A!0.86!32.69!BCL11A;;chr1:47903709..47903764,+!p1@BC169308!0.86!7.24!FOXD2;;chr9:102584128..102584144,+!p3@NR4A3!0.85!12.07!NR4A3;;chr8:60031682..60031710,-!p2@TOX!0.85!10.09!TOX;;chr8:55370487..55370503,+!p1@SOX17!0.85!6.14!SOX17;;chr11:85393886..85393913,-!p3@CREBZF!0.85!6.14!CREBZF;;chrX:106960285..106960299,-!p1@TSC22D3!0.84!169.58!TSC22D3;;chr7:150974206..150974255,-!p1@SMARCD3!0.84!39.49!SMARCD3;;chr16:86544113..86544145,+!p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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010743
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10188-103D8
 |is_a=EFO:0002091;;FF:0010188
@@ Line 46: / Line 52: @@
 |library_id=CNhs12840
 |library_id_phase_based=2:CNhs12840
-|name="cerebral meninges, adult"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10188
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10188
+|name=cerebral meninges, adult
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs12840,LSID973,release012,COMPLETED"
+|profile_hcage=CNhs12840,LSID973,release012,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10188-103D8;search_select_hide=table117:FF:10188-103D8
 }}

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FF:10188-103D8: Difference between revisions

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Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0