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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005021
|DRA_sample_Accession=CAGE@SAMD00005021
|accession_numbers=CAGE;DRX008572;DRR009444;DRZ000869;DRZ002254
|accession_numbers=CAGE;DRX008572;DRR009444;DRZ000869;DRZ002254;DRZ012219;DRZ013604
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
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|def=
|def=
|expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.59!462.20!GATA3;;chr3:189507432..189507459,+!p1@TP63!2.19!155.52!TP63;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.92!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.05!110.11!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.84!76.52!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.72!51.01!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.69!55.36!BNC1;;chr13:73633131..73633149,+!p1@KLF5!1.62!413.68!KLF5;;chr1:6479968..6479986,-!p1@HES2!1.60!38.57!HES2;;chr15:101069113..101069169,-!p1@CERS3!1.56!35.46!CERS3;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.52!PITX1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.12!NR4A3;;chr5:134369879..134369898,-!p2@PITX1!1.48!29.24!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.84!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.85!SOX15;;chr15:60884706..60884743,-!p1@RORA!1.45!136.86!RORA;;chr14:29235961..29236008,+!p1@FOXG1!1.36!21.77!FOXG1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.53!ZNF750;;chr8:10588010..10588030,-!p1@SOX7!1.32!19.91!SOX7;;chr2:46524897..46524911,+!p2@EPAS1!1.30!51.63!EPAS1;;chr15:96874927..96874938,+!p8@NR2F2!1.28!37.95!NR2F2;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.04!SPI1;;chr15:60884747..60884774,-!p3@RORA!1.23!38.57!RORA;;chr19:36391434..36391450,-!p1@NFKBID!1.23!31.10!NFKBID;;chr5:2751762..2751784,-!p1@IRX2!1.23!16.17!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr5:138643069..138643082,+!p13@MATR3!1.18!14.31!MATR3;;chr3:111314186..111314204,-!p1@ZBED2!1.18!14.31!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.17!36.70!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!21.15!FOXQ1;;chr7:31380292..31380351,-!p1@NEUROD6!1.13!12.44!NEUROD6;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12.44!ZNF238;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.66!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.12!13.69!ZNF385A;;chr9:102584128..102584144,+!p3@NR4A3!1.11!23.02!NR4A3;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.82!GRHL2;;chr2:16080659..16080685,+!p1@MYCN!1.11!11.82!MYCN;;chr12:81101472..81101483,+!p2@MYF6!1.11!11.82!MYF6;;chr7:28448965..28448994,+!p2@CREB5!1.09!39.81!CREB5;;chr5:153857778..153857794,-!p1@HAND1!1.09!11.20!HAND1;;chr12:96588368..96588394,+!p3@ELK3!1.07!29.24!ELK3;;chr5:3595934..3595957,+!p2@IRX1!1.06!10.58!IRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.06!10.58!MEOX2;;chr14:75988831..75988847,+!p2@BATF!1.06!10.58!BATF;;chr18:22932080..22932170,-!p1@ZNF521!1.05!44.17!ZNF521;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.80!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.33!PLEK;;chr3:181429704..181429722,+!p1@SOX2!1.01!9.33!SOX2;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.33!HAND2;;chr5:3595961..3595975,+!p3@IRX1!1.01!9.33!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.33!PRRX1;;chr20:22564895..22564910,-!p1@FOXA2!1.01!9.33!FOXA2;;chr10:131762504..131762555,-!p1@EBF3!1.01!9.33!EBF3;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.33!BARX2;;chr11:34645791..34645836,+!p3@EHF!1.01!9.33!EHF;;chr4:103422457..103422469,+!p3@NFKB1!0.99!14.31!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.99!11.82!GRHL1;;chr2:5832508..5832524,+!p1@SOX11!0.99!8.71!SOX11;;chr2:63277948..63277974,+!p1@OTX1!0.99!8.71!OTX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.99!8.71!PKNOX2;;chr1:201979743..201979762,+!p1@ELF3!0.99!8.71!ELF3;;chr1:203055129..203055147,-!p1@MYOG!0.99!8.71!MYOG;;chr21:39870339..39870443,-!p1@ERG!0.99!8.71!ERG;;chr6:10419768..10419819,-!p6@TFAP2A!0.99!8.71!TFAP2A;;chr17:46132044..46132080,+!p4@NFE2L1!0.99!8.71!NFE2L1;;chr6:15246200..15246214,+!p2@JARID2!0.98!24.26!JARID2;;chr6:45296048..45296082,+!p1@RUNX2!0.96!9.33!RUNX2;;chr3:189507460..189507471,+!p3@TP63!0.96!8.09!TP63;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.09!BNC1;;chr2:70142232..70142251,+!p1@MXD1!0.93!44.17!MXD1;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.99!RUNX1;;chr17:53342311..53342400,+!p1@HLF!0.93!8.71!HLF;;chr11:34642656..34642667,+!p2@EHF!0.93!7.46!EHF;;chr1:209979449..209979460,-!p3@IRF6!0.93!7.46!IRF6;;chr19:45971246..45971265,+!p1@FOSB!0.92!141.21!FOSB;;chr12:27485762..27485776,+!p3@ARNTL2!0.92!20.53!ARNTL2;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.33!EBF1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr2:45168834..45168847,+!p2@SIX3!0.89!6.84!SIX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.89!6.84!TFAP2A;;chr7:50343634..50343717,+!p2@IKZF1!0.89!6.84!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!0.89!6.84!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!0.89!6.84!ZNF385A;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.84!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.88!65.32!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.39!TWIST2;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.69!DACH1;;chr2:208030647..208030689,-!p1@KLF7!0.87!56.61!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.87!14.31!ZNF436;;chr14:75988771..75988826,+!p1@BATF!0.87!8.71!BATF;;chr20:22565185..22565223,-!p3@FOXA2!0.86!6.22!FOXA2;;chr10:114710430..114710470,+!p30@TCF7L2!0.86!6.22!TCF7L2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.22!HOXC5;;chr7: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|expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.59!462.20!GATA3;;chr3:189507432..189507459,+!p1@TP63!2.19!155.52!TP63;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.92!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.05!110.11!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.84!76.52!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.72!51.01!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.69!55.36!BNC1;;chr13:73633131..73633149,+!p1@KLF5!1.62!413.68!KLF5;;chr1:6479968..6479986,-!p1@HES2!1.60!38.57!HES2;;chr15:101069113..101069169,-!p1@CERS3!1.56!35.46!CERS3;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.52!PITX1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.12!NR4A3;;chr5:134369879..134369898,-!p2@PITX1!1.48!29.24!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.84!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.85!SOX15;;chr15:60884706..60884743,-!p1@RORA!1.45!136.86!RORA;;chr14:29235961..29236008,+!p1@FOXG1!1.36!21.77!FOXG1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.53!ZNF750;;chr8:10588010..10588030,-!p1@SOX7!1.32!19.91!SOX7;;chr2:46524897..46524911,+!p2@EPAS1!1.30!51.63!EPAS1;;chr15:96874927..96874938,+!p8@NR2F2!1.28!37.95!NR2F2;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.04!SPI1;;chr15:60884747..60884774,-!p3@RORA!1.23!38.57!RORA;;chr19:36391434..36391450,-!p1@NFKBID!1.23!31.10!NFKBID;;chr5:2751762..2751784,-!p1@IRX2!1.23!16.17!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr5:138643069..138643082,+!p13@MATR3!1.18!14.31!MATR3;;chr3:111314186..111314204,-!p1@ZBED2!1.18!14.31!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.17!36.70!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!21.15!FOXQ1;;chr7:31380292..31380351,-!p1@NEUROD6!1.13!12.44!NEUROD6;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12.44!ZNF238;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.66!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.12!13.69!ZNF385A;;chr9:102584128..102584144,+!p3@NR4A3!1.11!23.02!NR4A3;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.82!GRHL2;;chr2:16080659..16080685,+!p1@MYCN!1.11!11.82!MYCN;;chr12:81101472..81101483,+!p2@MYF6!1.11!11.82!MYF6;;chr7:28448965..28448994,+!p2@CREB5!1.09!39.81!CREB5;;chr5:153857778..153857794,-!p1@HAND1!1.09!11.20!HAND1;;chr12:96588368..96588394,+!p3@ELK3!1.07!29.24!ELK3;;chr5:3595934..3595957,+!p2@IRX1!1.06!10.58!IRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.06!10.58!MEOX2;;chr14:75988831..75988847,+!p2@BATF!1.06!10.58!BATF;;chr18:22932080..22932170,-!p1@ZNF521!1.05!44.17!ZNF521;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.80!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.33!PLEK;;chr3:181429704..181429722,+!p1@SOX2!1.01!9.33!SOX2;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.33!HAND2;;chr5:3595961..3595975,+!p3@IRX1!1.01!9.33!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.33!PRRX1;;chr20:22564895..22564910,-!p1@FOXA2!1.01!9.33!FOXA2;;chr10:131762504..131762555,-!p1@EBF3!1.01!9.33!EBF3;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.33!BARX2;;chr11:34645791..34645836,+!p3@EHF!1.01!9.33!EHF;;chr4:103422457..103422469,+!p3@NFKB1!0.99!14.31!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.99!11.82!GRHL1;;chr2:5832508..5832524,+!p1@SOX11!0.99!8.71!SOX11;;chr2:63277948..63277974,+!p1@OTX1!0.99!8.71!OTX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.99!8.71!PKNOX2;;chr1:201979743..201979762,+!p1@ELF3!0.99!8.71!ELF3;;chr1:203055129..203055147,-!p1@MYOG!0.99!8.71!MYOG;;chr21:39870339..39870443,-!p1@ERG!0.99!8.71!ERG;;chr6:10419768..10419819,-!p6@TFAP2A!0.99!8.71!TFAP2A;;chr17:46132044..46132080,+!p4@NFE2L1!0.99!8.71!NFE2L1;;chr6:15246200..15246214,+!p2@JARID2!0.98!24.26!JARID2;;chr6:45296048..45296082,+!p1@RUNX2!0.96!9.33!RUNX2;;chr3:189507460..189507471,+!p3@TP63!0.96!8.09!TP63;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.09!BNC1;;chr2:70142232..70142251,+!p1@MXD1!0.93!44.17!MXD1;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.99!RUNX1;;chr17:53342311..53342400,+!p1@HLF!0.93!8.71!HLF;;chr11:34642656..34642667,+!p2@EHF!0.93!7.46!EHF;;chr1:209979449..209979460,-!p3@IRF6!0.93!7.46!IRF6;;chr19:45971246..45971265,+!p1@FOSB!0.92!141.21!FOSB;;chr12:27485762..27485776,+!p3@ARNTL2!0.92!20.53!ARNTL2;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.33!EBF1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr2:45168834..45168847,+!p2@SIX3!0.89!6.84!SIX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.89!6.84!TFAP2A;;chr7:50343634..50343717,+!p2@IKZF1!0.89!6.84!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!0.89!6.84!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!0.89!6.84!ZNF385A;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.84!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.88!65.32!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.39!TWIST2;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.69!DACH1;;chr2:208030647..208030689,-!p1@KLF7!0.87!56.61!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.87!14.31!ZNF436;;chr14:75988771..75988826,+!p1@BATF!0.87!8.71!BATF;;chr20:22565185..22565223,-!p3@FOXA2!0.86!6.22!FOXA2;;chr10:114710430..114710470,+!p30@TCF7L2!0.86!6.22!TCF7L2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.22!HOXC5;;chr7: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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002167;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.ctss.bed.gz
|id=FF:12227-129F4
|id=FF:12227-129F4
|is_a=EFO:0002091;;FF:0104976
|is_a=EFO:0002091;;FF:0104976
Line 46: Line 52:
|library_id=CNhs12574
|library_id=CNhs12574
|library_id_phase_based=2:CNhs12574
|library_id_phase_based=2:CNhs12574
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12227
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12227
|name=nasal epithelial cells, donor2
|name=nasal epithelial cells, donor2
|namespace=
|namespace=
Line 53: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=TBX4,5:2.75427865953;TP53:1.83606691371;VSX1,2:1.75070472004;NANOG:1.67051866558;ZEB1:1.62930970776;NKX2-3_NKX2-5:1.5907719609;GLI1..3:1.54359176068;NKX2-1,4:1.50741515538;SNAI1..3:1.46825198455;FOX{I1,J2}:1.36488383099;MED-1{core}:1.35434991284;ADNP_IRX_SIX_ZHX:1.34152415567;POU6F1:1.32602817871;TBP:1.23965140817;POU5F1:1.20835857704;HIF1A:1.19032849801;SMAD1..7,9:1.18914055028;POU1F1:1.14586392121;TFAP2{A,C}:1.09691993679;MYOD1:1.00551796878;ZNF148:0.983211289333;ZNF384:0.978656567607;PPARG:0.949150137277;PAX4:0.928645906886;MAZ:0.921441366852;ALX1:0.893393954409;PDX1:0.877237388483;CRX:0.819670204532;FOXQ1:0.792194469222;MTF1:0.790246312937;XCPE1{core}:0.784190275367;EGR1..3:0.773973358654;HOX{A5,B5}:0.76743615492;bHLH_family:0.721922855707;PAX8:0.718315836643;SP1:0.71502737072;AHR_ARNT_ARNT2:0.713342027884;TFCP2:0.706443316887;NFIL3:0.704104220983;MZF1:0.699190726476;FOS_FOS{B,L1}_JUN{B,D}:0.693375175399;NFE2:0.692704605275;FOSL2:0.66785448389;TEAD1:0.661712402;BACH2:0.654509645572;DBP:0.649006175381;HLF:0.647744628247;CEBPA,B_DDIT3:0.645704306565;EP300:0.623619189793;HOX{A6,A7,B6,B7}:0.578822028213;FOXL1:0.568780512096;TFDP1:0.553238454079;ZBTB6:0.536233072483;FOX{F1,F2,J1}:0.530935974423;ATF5_CREB3:0.524405984352;LMO2:0.5151352104;FOXM1:0.506906157703;ZNF423:0.506557701552;SOX17:0.496986423178;GZF1:0.491237652713;CDC5L:0.481183752746;SPZ1:0.459197341625;GTF2I:0.446721353168;POU2F1..3:0.444068670645;GTF2A1,2:0.436040303958;ZNF238:0.432533463248;NR5A1,2:0.430683844012;JUN:0.419087072809;HMX1:0.41662229736;NHLH1,2:0.400669524295;TLX1..3_NFIC{dimer}:0.400229165403;LHX3,4:0.391133487218;HOX{A4,D4}:0.390855270511;RFX2..5_RFXANK_RFXAP:0.388010775156;CDX1,2,4:0.380805778186;ZFP161:0.372897292872;MYFfamily:0.337258188111;ATF4:0.332594632443;PRRX1,2:0.331193387966;ATF2:0.324656225714;TAL1_TCF{3,4,12}:0.323941419413;NR6A1:0.316472276912;TFAP2B:0.306244029853;HAND1,2:0.2945177946;REST:0.292663022448;GFI1B:0.28020928876;RBPJ:0.279542391802;RREB1:0.26910890284;GATA6:0.257174989158;SOX2:0.253927791624;NKX6-1,2:0.252782680534;NFKB1_REL_RELA:0.234999902728;RUNX1..3:0.231262772278;PRDM1:0.229031485077;MTE{core}:0.224443698368;BPTF:0.221576715046;STAT5{A,B}:0.218022358238;MAFB:0.208491741595;TLX2:0.203353627091;PAX5:0.195260943122;TGIF1:0.194217744072;MYBL2:0.186620739586;NFE2L2:0.173457620971;RXR{A,B,G}:0.158084125425;OCT4_SOX2{dimer}:0.149810291275;ZIC1..3:0.143033801686;NANOG{mouse}:0.13638701598;MEF2{A,B,C,D}:0.134464990301;POU3F1..4:0.13404845026;PAX1,9:0.131470410969;T:0.126646924733;NKX3-1:0.12428527514;IRF7:0.0981854896779;PAX2:0.0754001348301;SRF:0.0669922274021;CUX2:0.0662105429969;ONECUT1,2:0.0643685896327;RORA:0.0607649412097;NKX3-2:0.0527598210032;AR:0.0471511283649;SPI1:0.0342926879523;YY1:0.0313515117215;UFEwm:0.0258955837732;BREu{core}:0.0151200444574;FOXN1:0.0116823310737;GCM1,2:0.00516279428647;SPIB:0.000623311787161;ETS1,2:-0.0114759661528;PAX3,7:-0.026889216618;PITX1..3:-0.0406972765052;ESR1:-0.0501528673852;LEF1_TCF7_TCF7L1,2:-0.0687120987694;NKX2-2,8:-0.0786044699846;DMAP1_NCOR{1,2}_SMARC:-0.0997968759866;PATZ1:-0.100660922502;IKZF1:-0.101073120311;FOXP3:-0.122649676989;ALX4:-0.123502052111;ELF1,2,4:-0.137462017522;RFX1:-0.142221774254;HNF1A:-0.152587762105;GFI1:-0.154739217926;SREBF1,2:-0.200028684487;FOX{D1,D2}:-0.205748324143;NR3C1:-0.206921549839;RXRA_VDR{dimer}:-0.217364859897;TOPORS:-0.233854896254;HIC1:-0.257298739741;NR1H4:-0.269744024825;TFAP4:-0.273274820724;HBP1_HMGB_SSRP1_UBTF:-0.295627838033;ATF6:-0.297110244985;NFIX:-0.332549120789;AIRE:-0.334400254954;FOXO1,3,4:-0.338911882652;CREB1:-0.339329845536;SOX5:-0.348899623878;TEF:-0.348982448726;HSF1,2:-0.351095466567;HNF4A_NR2F1,2:-0.352392189312;NFY{A,B,C}:-0.364113634466;ZBTB16:-0.365002991865;FOXA2:-0.374403174586;EBF1:-0.396575268581;PBX1:-0.399173626973;NFE2L1:-0.420240167576;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.453598985679;STAT2,4,6:-0.462879629938;KLF4:-0.479418299929;E2F1..5:-0.530360947216;STAT1,3:-0.570263007283;ELK1,4_GABP{A,B1}:-0.58746949733;SOX{8,9,10}:-0.588841371024;ZNF143:-0.593454769186;IRF1,2:-0.630655664556;IKZF2:-0.673069887651;NFATC1..3:-0.719301615148;ARID5B:-0.734274595243;HMGA1,2:-0.742063367901;NRF1:-0.80258557387;GATA4:-0.809252649117;HES1:-0.810235349986;MYB:-0.812562721606;XBP1:-0.836800560105;FOXP1:-0.944953873669;EVI1:-0.951924029548;EN1,2:-0.952250991361;ESRRA:-0.969507337173;PAX6:-1.05101951733;FOXD3:-1.1072530737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15385172626;HOXA9_MEIS1:-1.21512216089
|top_motifs=TBX4,5:2.75427865953;TP53:1.83606691371;VSX1,2:1.75070472004;NANOG:1.67051866558;ZEB1:1.62930970776;NKX2-3_NKX2-5:1.5907719609;GLI1..3:1.54359176068;NKX2-1,4:1.50741515538;SNAI1..3:1.46825198455;FOX{I1,J2}:1.36488383099;MED-1{core}:1.35434991284;ADNP_IRX_SIX_ZHX:1.34152415567;POU6F1:1.32602817871;TBP:1.23965140817;POU5F1:1.20835857704;HIF1A:1.19032849801;SMAD1..7,9:1.18914055028;POU1F1:1.14586392121;TFAP2{A,C}:1.09691993679;MYOD1:1.00551796878;ZNF148:0.983211289333;ZNF384:0.978656567607;PPARG:0.949150137277;PAX4:0.928645906886;MAZ:0.921441366852;ALX1:0.893393954409;PDX1:0.877237388483;CRX:0.819670204532;FOXQ1:0.792194469222;MTF1:0.790246312937;XCPE1{core}:0.784190275367;EGR1..3:0.773973358654;HOX{A5,B5}:0.76743615492;bHLH_family:0.721922855707;PAX8:0.718315836643;SP1:0.71502737072;AHR_ARNT_ARNT2:0.713342027884;TFCP2:0.706443316887;NFIL3:0.704104220983;MZF1:0.699190726476;FOS_FOS{B,L1}_JUN{B,D}:0.693375175399;NFE2:0.692704605275;FOSL2:0.66785448389;TEAD1:0.661712402;BACH2:0.654509645572;DBP:0.649006175381;HLF:0.647744628247;CEBPA,B_DDIT3:0.645704306565;EP300:0.623619189793;HOX{A6,A7,B6,B7}:0.578822028213;FOXL1:0.568780512096;TFDP1:0.553238454079;ZBTB6:0.536233072483;FOX{F1,F2,J1}:0.530935974423;ATF5_CREB3:0.524405984352;LMO2:0.5151352104;FOXM1:0.506906157703;ZNF423:0.506557701552;SOX17:0.496986423178;GZF1:0.491237652713;CDC5L:0.481183752746;SPZ1:0.459197341625;GTF2I:0.446721353168;POU2F1..3:0.444068670645;GTF2A1,2:0.436040303958;ZNF238:0.432533463248;NR5A1,2:0.430683844012;JUN:0.419087072809;HMX1:0.41662229736;NHLH1,2:0.400669524295;TLX1..3_NFIC{dimer}:0.400229165403;LHX3,4:0.391133487218;HOX{A4,D4}:0.390855270511;RFX2..5_RFXANK_RFXAP:0.388010775156;CDX1,2,4:0.380805778186;ZFP161:0.372897292872;MYFfamily:0.337258188111;ATF4:0.332594632443;PRRX1,2:0.331193387966;ATF2:0.324656225714;TAL1_TCF{3,4,12}:0.323941419413;NR6A1:0.316472276912;TFAP2B:0.306244029853;HAND1,2:0.2945177946;REST:0.292663022448;GFI1B:0.28020928876;RBPJ:0.279542391802;RREB1:0.26910890284;GATA6:0.257174989158;SOX2:0.253927791624;NKX6-1,2:0.252782680534;NFKB1_REL_RELA:0.234999902728;RUNX1..3:0.231262772278;PRDM1:0.229031485077;MTE{core}:0.224443698368;BPTF:0.221576715046;STAT5{A,B}:0.218022358238;MAFB:0.208491741595;TLX2:0.203353627091;PAX5:0.195260943122;TGIF1:0.194217744072;MYBL2:0.186620739586;NFE2L2:0.173457620971;RXR{A,B,G}:0.158084125425;OCT4_SOX2{dimer}:0.149810291275;ZIC1..3:0.143033801686;NANOG{mouse}:0.13638701598;MEF2{A,B,C,D}:0.134464990301;POU3F1..4:0.13404845026;PAX1,9:0.131470410969;T:0.126646924733;NKX3-1:0.12428527514;IRF7:0.0981854896779;PAX2:0.0754001348301;SRF:0.0669922274021;CUX2:0.0662105429969;ONECUT1,2:0.0643685896327;RORA:0.0607649412097;NKX3-2:0.0527598210032;AR:0.0471511283649;SPI1:0.0342926879523;YY1:0.0313515117215;UFEwm:0.0258955837732;BREu{core}:0.0151200444574;FOXN1:0.0116823310737;GCM1,2:0.00516279428647;SPIB:0.000623311787161;ETS1,2:-0.0114759661528;PAX3,7:-0.026889216618;PITX1..3:-0.0406972765052;ESR1:-0.0501528673852;LEF1_TCF7_TCF7L1,2:-0.0687120987694;NKX2-2,8:-0.0786044699846;DMAP1_NCOR{1,2}_SMARC:-0.0997968759866;PATZ1:-0.100660922502;IKZF1:-0.101073120311;FOXP3:-0.122649676989;ALX4:-0.123502052111;ELF1,2,4:-0.137462017522;RFX1:-0.142221774254;HNF1A:-0.152587762105;GFI1:-0.154739217926;SREBF1,2:-0.200028684487;FOX{D1,D2}:-0.205748324143;NR3C1:-0.206921549839;RXRA_VDR{dimer}:-0.217364859897;TOPORS:-0.233854896254;HIC1:-0.257298739741;NR1H4:-0.269744024825;TFAP4:-0.273274820724;HBP1_HMGB_SSRP1_UBTF:-0.295627838033;ATF6:-0.297110244985;NFIX:-0.332549120789;AIRE:-0.334400254954;FOXO1,3,4:-0.338911882652;CREB1:-0.339329845536;SOX5:-0.348899623878;TEF:-0.348982448726;HSF1,2:-0.351095466567;HNF4A_NR2F1,2:-0.352392189312;NFY{A,B,C}:-0.364113634466;ZBTB16:-0.365002991865;FOXA2:-0.374403174586;EBF1:-0.396575268581;PBX1:-0.399173626973;NFE2L1:-0.420240167576;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.453598985679;STAT2,4,6:-0.462879629938;KLF4:-0.479418299929;E2F1..5:-0.530360947216;STAT1,3:-0.570263007283;ELK1,4_GABP{A,B1}:-0.58746949733;SOX{8,9,10}:-0.588841371024;ZNF143:-0.593454769186;IRF1,2:-0.630655664556;IKZF2:-0.673069887651;NFATC1..3:-0.719301615148;ARID5B:-0.734274595243;HMGA1,2:-0.742063367901;NRF1:-0.80258557387;GATA4:-0.809252649117;HES1:-0.810235349986;MYB:-0.812562721606;XBP1:-0.836800560105;FOXP1:-0.944953873669;EVI1:-0.951924029548;EN1,2:-0.952250991361;ESRRA:-0.969507337173;PAX6:-1.05101951733;FOXD3:-1.1072530737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15385172626;HOXA9_MEIS1:-1.21512216089
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12227-129F4;search_select_hide=table117:FF:12227-129F4
}}
}}

Latest revision as of 18:35, 4 June 2020

Name:nasal epithelial cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12574
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuenasal cavity
dev stageNA
sexNA
ageNA
cell typeepithelial cell
cell lineNA
companyPromocell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005021
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12574 CAGE DRX008572 DRR009444
Accession ID Hg19

Library idBAMCTSS
CNhs12574 DRZ000869 DRZ002254
Accession ID Hg38

Library idBAMCTSS
CNhs12574 DRZ012219 DRZ013604
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.215
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
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C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12574

Jaspar motifP-value
MA0002.20.904
MA0003.10.683
MA0004.10.934
MA0006.10.241
MA0007.10.443
MA0009.10.702
MA0014.10.289
MA0017.10.993
MA0018.20.613
MA0019.10.459
MA0024.10.00182
MA0025.10.659
MA0027.10.587
MA0028.18.88021e-5
MA0029.10.98
MA0030.10.123
MA0031.10.288
MA0035.20.985
MA0038.10.984
MA0039.20.029
MA0040.10.423
MA0041.10.267
MA0042.10.292
MA0043.10.0678
MA0046.10.816
MA0047.20.00756
MA0048.10.138
MA0050.11.12105e-4
MA0051.14.00793e-4
MA0052.10.169
MA0055.10.0648
MA0057.10.777
MA0058.10.593
MA0059.10.606
MA0060.10.363
MA0061.10.702
MA0062.22.24324e-5
MA0065.20.308
MA0066.10.661
MA0067.10.751
MA0068.10.135
MA0069.10.163
MA0070.10.533
MA0071.10.0413
MA0072.10.208
MA0073.10.785
MA0074.10.646
MA0076.16.82521e-7
MA0077.10.917
MA0078.10.31
MA0079.20.447
MA0080.20.757
MA0081.10.277
MA0083.10.212
MA0084.10.054
MA0087.10.631
MA0088.11.08489e-4
MA0090.10.0107
MA0091.10.832
MA0092.10.864
MA0093.10.829
MA0099.24.64864e-20
MA0100.10.114
MA0101.10.541
MA0102.25.75053e-4
MA0103.15.83322e-5
MA0104.20.358
MA0105.10.275
MA0106.11.84286e-4
MA0107.10.291
MA0108.22.62589e-7
MA0111.10.87
MA0112.20.584
MA0113.10.815
MA0114.10.215
MA0115.10.188
MA0116.10.331
MA0117.10.797
MA0119.10.335
MA0122.10.821
MA0124.10.576
MA0125.10.0347
MA0131.10.978
MA0135.10.0148
MA0136.10.827
MA0137.20.036
MA0138.20.761
MA0139.10.289
MA0140.10.259
MA0141.10.204
MA0142.10.255
MA0143.10.428
MA0144.10.371
MA0145.10.0122
MA0146.10.197
MA0147.10.282
MA0148.10.0204
MA0149.10.13
MA0150.10.0209
MA0152.10.235
MA0153.10.596
MA0154.10.919
MA0155.10.797
MA0156.10.0264
MA0157.10.883
MA0159.10.639
MA0160.10.936
MA0162.10.977
MA0163.14.35471e-8
MA0164.10.729
MA0258.10.561
MA0259.10.586



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12574

Novel motifP-value
10.47
100.0289
1000.0881
1010.682
1020.464
1030.941
1040.631
1050.186
1060.0197
1070.00188
1080.15
1090.191
110.752
1100.816
1110.303
1120.737
1130.186
1140.513
1150.624
1160.266
1170.0204
1180.294
1190.908
120.813
1200.205
1210.39
1220.0932
1230.126
1240.0449
1250.645
1260.488
1270.0327
1280.0119
1290.692
130.749
1300.251
1310.399
1320.934
1330.496
1340.638
1350.0825
1360.29
1370.156
1380.285
1390.727
140.326
1400.96
1410.126
1420.0231
1430.564
1440.258
1450.802
1460.00148
1470.697
1480.658
1490.519
150.832
1500.373
1510.505
1520.0772
1530.0396
1540.752
1550.773
1560.94
1570.5
1580.649
1590.324
160.315
1600.35
1610.911
1620.977
1630.213
1640.172
1650.699
1660.827
1670.272
1680.0665
1690.719
170.288
180.0418
190.394
20.0995
200.425
210.625
220.792
230.92
240.374
250.765
260.476
270.934
280.814
290.634
30.706
300.0429
310.312
320.787
330.593
340.722
350.299
360.0499
370.441
380.962
390.253
40.442
400.33
410.517
420.671
430.61
440.376
450.0809
460.984
470.407
480.714
490.735
50.61
500.907
510.87
520.0415
530.278
540.235
550.982
560.464
570.81
580.84
590.573
60.0327
600.124
610.926
620.364
630.868
640.527
650.584
660.382
670.952
680.184
690.248
70.996
700.604
710.0403
720.403
730.891
740.127
750.24
760.391
770.16
780.823
790.514
80.396
800.0175
810.193
820.235
830.545
840.353
850.132
860.612
870.946
880.572
890.533
90.952
900.741
910.444
920.454
930.764
940.589
950.0398
960.517
970.239
980.942
990.432



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12574


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0104976 (human nasal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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