FFCP PHASE1:Mm9::chr9:90210747..90210763,+: Difference between revisions
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|id=chr9:90210747..90210763,+
|short_description=p1@ENSMUST00000122703
|description=CAGE_peak_1_at_ENSMUST00000122703_5end
|association_with_transcript=0bp_to_ENSMU...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3103 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000122703_5end | |||
|cluster_id=chr9:90210747..90210763,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000122703_5end | |||
|id=chr9:90210747..90210763,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.85e-29!115;CL:0000004!2.85e-29!115;CL:0000255!2.85e-29!115;CL:0002319!3.68e-29!43;CL:0000055!3.86e-29!50;CL:0000221!3.09e-28!44;CL:0000133!3.09e-28!44;CL:0002371!4.43e-28!118;CL:0002321!4.14e-27!70;CL:0000220!4.14e-27!70;CL:0000144!5.99e-27!121;CL:0000012!5.99e-27!121;CL:0000393!9.30e-27!39;CL:0000211!9.30e-27!39;CL:0000540!2.74e-26!33;CL:0000047!2.74e-26!33;CL:0000031!2.74e-26!33;CL:0000404!2.74e-26!33;CL:0000723!5.55e-26!91;CL:0000048!5.55e-26!91;CL:0000034!1.18e-25!97;CL:0000117!3.54e-18!23;CL:0000337!3.54e-18!23;CL:0000107!2.98e-10!9;CL:0000219!1.87e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,1.00e-17,91;CL:0000048,1.00e-17,91;CL:0000393,1.91e-17,39;CL:0000211,1.91e-17,39;CL:0000034,3.60e-16,97;CL:0000540,6.58e-15,33;CL:0000047,6.58e-15,33;CL:0000031,6.58e-15,33;CL:0000404,6.58e-15,33;CL:0002321,2.85e-13,70;CL:0002319,6.74e-12,43;CL:0000221,1.57e-11,44;CL:0000133,1.57e-11,44;CL:0000117,2.20e-09,23;CL:0000337,2.20e-09,23;CL:0000107,1.07e-07,9;CL:0000839,1.94e-07,13;CL:0002494,3.50e-07,3;CL:0000737,3.50e-07,3;CL:0000746,3.50e-07,3;CL:0000513,3.50e-07,3;CL:0002614,5.98e-07,3;CL:0002610,6.59e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.26e-26!73;UBERON:0005743!3.26e-26!73;UBERON:0000073!3.88e-25!75;UBERON:0001016!3.88e-25!75;UBERON:0002020!2.31e-21!34;UBERON:0002791!3.32e-17!29;UBERON:0003528!3.32e-17!29;UBERON:0001893!3.32e-17!29;UBERON:0004121!7.58e-15!102;UBERON:0000924!7.58e-15!102;UBERON:0006601!7.58e-15!102;UBERON:0002619!3.36e-14!17;UBERON:0000956!1.34e-13!21;UBERON:0001869!1.34e-13!21;UBERON:0000203!1.34e-13!21;UBERON:0001049!3.32e-13!52;UBERON:0005068!3.32e-13!52;UBERON:0006241!3.32e-13!52;UBERON:0007135!3.32e-13!52;UBERON:0002021!8.37e-13!10;UBERON:0000411!8.37e-13!10;UBERON:0001950!8.37e-13!10;UBERON:0002616!1.06e-12!49;UBERON:0000955!2.77e-12!50;UBERON:0006238!2.77e-12!50;UBERON:0002780!4.97e-11!39;UBERON:0001890!4.97e-11!39;UBERON:0006240!4.97e-11!39;UBERON:0003080!1.37e-10!40;UBERON:0002410!2.98e-10!9;UBERON:0002346!6.17e-10!71;UBERON:0003075!6.17e-10!71;UBERON:0007284!6.17e-10!71;UBERON:0000033!3.88e-08!63;UBERON:0000010!5.42e-08!11;UBERON:0003056!1.73e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.60e-17,10;UBERON:0000411,3.60e-17,10;UBERON:0001950,3.60e-17,10;UBERON:0001017,1.24e-15,73;UBERON:0001016,4.83e-15,75;UBERON:0002619,8.75e-12,17;UBERON:0002020,2.11e-11,34;UBERON:0004121,1.56e-10,95;UBERON:0000924,1.56e-10,95;UBERON:0006601,1.56e-10,95;UBERON:0003528,2.04e-10,29;UBERON:0002791,2.04e-10,29;UBERON:0001893,2.04e-10,29;UBERON:0000956,3.90e-09,21;UBERON:0001869,3.90e-09,21;UBERON:0000203,3.90e-09,21;UBERON:0000073,4.50e-09,54;UBERON:0002410,1.07e-07,9;UBERON:0002780,5.26e-07,39;UBERON:0001890,5.26e-07,39;UBERON:0006240,5.26e-07,39;UBERON:0000013,5.43e-07,3;UBERON:0002038,5.98e-07,3;UBERON:0009663,5.98e-07,3;UBERON:0009661,5.98e-07,3;UBERON:0000125,5.98e-07,3;UBERON:0002308,5.98e-07,3;UBERON:0004684,6.59e-07,3;UBERON:0002275,6.59e-07,3;UBERON:0003080,9.25e-07,40 | |||
|phase1_expression=0,0,0,0.60492842261366,0.500895729946347,0,0,0.258246646883153,0.140788722151667,0,0,0.0797721589953364,0.171200729931206,0,1.66554880907831,0,0,0,0,1.27316895539409,0,0,0,0,0,0,0,0,0.190023419456374,0,0,5.08024538767705,4.30545351309199,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.439372365468944,0.388859798148567,0.139986421625363,0,0,0,0,1.54355661621568,2.0057340795713,3.6097046459421,0,13.7537654610729,3.1691570175309,0,0.889294796111139,0.899899717281399,15.8218618010716,3.5524005747305,1.19840044207362,0.384218305321555,0,0.405017814995072,0.210324961351382,1.99955689082663,0.441737081903227,0.122490799214954,0.383381884072945,4.5960939330501,4.40463523997555,1.40456071893706,1.0752457327937,0.395658863190582,0.274462930807229,0.52091337055676,1.95428099300967,1.68828783009504,2.29197371665215,1.17851434189467,0.284743361598206,0.186399445825301,0,0,0,0,0,3.77792234146472,1.94932925234301,1.79210754838934,0,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,2.17562273527484,0,0,0,0,0,0,0.94652465824877,0.780877488593277,2.36965737506079,0.955875191810208,1.11399337041197,1.13230612315533,1.21443210502468,1.46127928955656,3.95287777946523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.335769232728157,0,0,0,0,0,2.82375921308533,1.38097570952153,2.86447756719698,0.343706364687375,3.42541259885321,3.7769694869485,2.70009000092722,2.70192721934532,3.62513927187364,2.5888015587591,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0.60492842261366,0.500895729946347,0,0,0.258246646883153,0.140788722151667,0,0,0.0797721589953364,0.171200729931206,0,1.66554880907831,0,0,0,0,1.27316895539409,0,0,0,0,0,0,0,0,0.190023419456374,0,0,5.08024538767705,4.30545351309199,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.439372365468944,0.388859798148567,0.139986421625363,0,0,0,0,1.54355661621568,2.0057340795713,3.6097046459421,0,13.7537654610729,3.1691570175309,0,0.889294796111139,0.899899717281399,15.8218618010716,3.5524005747305,1.19840044207362,0.384218305321555,0,0.405017814995072,0.210324961351382,1.99955689082663,0.441737081903227,0.122490799214954,0.383381884072945,4.5960939330501,4.40463523997555,1.40456071893706,1.0752457327937,0.395658863190582,0.274462930807229,0.52091337055676,1.95428099300967,1.68828783009504,2.29197371665215,1.17851434189467,0.284743361598206,0.186399445825301,0,0,0,0,0,3.77792234146472,1.94932925234301,1.79210754838934,0,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,2.17562273527484,0,0,0,0,0,0,0.94652465824877,0.780877488593277,2.36965737506079,0.955875191810208,1.11399337041197,1.13230612315533,1.21443210502468,1.46127928955656,3.95287777946523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.335769232728157,0,0,0,0,0,2.82375921308533,1.38097570952153,2.86447756719698,0.343706364687375,3.42541259885321,3.7769694869485,2.70009000092722,2.70192721934532,3.62513927187364,2.5888015587591,0,0,0,0,0,0,0.222246727801615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENSMUST00000122703 | |||
}} | }} |
Latest revision as of 18:34, 5 August 2015
Short description: | p1@ENSMUST00000122703 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000122703_5end |
Coexpression cluster: | MCL_coexpression_mm9:3103 |
Association with transcript: | 0bp_to_ENSMUST00000122703_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 1.00e-17 | 91 |
multi fate stem cell | 1.00e-17 | 91 |
electrically responsive cell | 1.91e-17 | 39 |
electrically active cell | 1.91e-17 | 39 |
stem cell | 3.60e-16 | 97 |
neuron | 6.58e-15 | 33 |
neuronal stem cell | 6.58e-15 | 33 |
neuroblast | 6.58e-15 | 33 |
electrically signaling cell | 6.58e-15 | 33 |
embryonic cell | 2.85e-13 | 70 |
neural cell | 6.74e-12 | 43 |
ectodermal cell | 1.57e-11 | 44 |
neurectodermal cell | 1.57e-11 | 44 |
CNS neuron (sensu Vertebrata) | 2.20e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.20e-09 | 23 |
autonomic neuron | 1.07e-07 | 9 |
myeloid lineage restricted progenitor cell | 1.94e-07 | 13 |
cardiocyte | 3.50e-07 | 3 |
striated muscle cell | 3.50e-07 | 3 |
cardiac muscle cell | 3.50e-07 | 3 |
cardiac muscle myoblast | 3.50e-07 | 3 |
neuron of the substantia nigra | 5.98e-07 | 3 |
raphe nuclei neuron | 6.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 3.60e-17 | 10 |
visual cortex | 3.60e-17 | 10 |
neocortex | 3.60e-17 | 10 |
central nervous system | 1.24e-15 | 73 |
nervous system | 4.83e-15 | 75 |
regional part of cerebral cortex | 8.75e-12 | 17 |
gray matter | 2.11e-11 | 34 |
ectoderm-derived structure | 1.56e-10 | 95 |
ectoderm | 1.56e-10 | 95 |
presumptive ectoderm | 1.56e-10 | 95 |
brain grey matter | 2.04e-10 | 29 |
regional part of telencephalon | 2.04e-10 | 29 |
telencephalon | 2.04e-10 | 29 |
cerebral cortex | 3.90e-09 | 21 |
cerebral hemisphere | 3.90e-09 | 21 |
pallium | 3.90e-09 | 21 |
regional part of nervous system | 4.50e-09 | 54 |
autonomic nervous system | 1.07e-07 | 9 |
regional part of forebrain | 5.26e-07 | 39 |
forebrain | 5.26e-07 | 39 |
future forebrain | 5.26e-07 | 39 |
sympathetic nervous system | 5.43e-07 | 3 |
substantia nigra | 5.98e-07 | 3 |
telencephalic nucleus | 5.98e-07 | 3 |
midbrain nucleus | 5.98e-07 | 3 |
neural nucleus | 5.98e-07 | 3 |
nucleus of brain | 5.98e-07 | 3 |
raphe nuclei | 6.59e-07 | 3 |
reticular formation | 6.59e-07 | 3 |
anterior neural tube | 9.25e-07 | 40 |