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{{f5samples
{{f5samples
|id=FF:11565-120D8
|DRA_sample_Accession=CAGE@SAMD00004690
|name=Mast cell, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004690
|sample_id=11565
|accession_numbers=CAGE;DRX008332;DRR009204;DRZ000629;DRZ002014;DRZ011979;DRZ013364
|rna_tube_id=120D8
|accession_numbers_RNASeq=sRNA-Seq;DRX037131;DRR041497;DRZ007139
|rna_box=120
|ancestors_in_anatomy_facet=
|rna_position=D8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=BsMC-S
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=50 years old adult
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.9
|rna_od260/280=1.97
|sample_cell_type=mast cell
|sample_cell_line=
|sample_collaboration=Sven Guhl (Charite Germany)
|sample_experimental_condition=control, untreated cells
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=8.67744
|rna_concentration=0.36156
|sample_note=
|profile_hcage=CNhs12594,LSID912,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10009,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000097,CL:0000134,CL:0000144,CL:0000151,CL:0000163,CL:0000219,CL:0000255,CL:0000457,CL:0000548,CL:0000557,CL:0000566,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000831,CL:0000837,CL:0000839,CL:0000988,CL:0001012,CL:0002028,CL:0002031,CL:0002032,CL:0002191,CL:0002274,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.38!2404.80!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.88!13086.14!FOSB;;chr14:35872453..35872485,-!p2@NFKBIA!2.27!438.50!NFKBIA;;chr14:75745523..75745537,+!p1@FOS!2.12!14651.05!FOS;;chr2:157189180..157189290,-!p1@NR4A2!2.12!642.51!NR4A2;;chr19:54058073..54058088,+!p1@ZNF331!2.11!126.47!ZNF331;;chr12:52445218..52445237,+!p1@NR4A1!2.09!1423.72!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.98!256.26!EGR3;;chr21:39870339..39870443,-!p1@ERG!1.96!90.60!ERG;;chr6:135502501..135502546,+!p1@MYB!1.92!98.07!MYB;;chr14:75988771..75988826,+!p1@BATF!1.90!103.25!BATF;;chr17:38497662..38497713,+!p4@RARA!1.90!90.19!RARA;;chr1:59249688..59249703,-!p3@JUN!1.88!429.17!JUN;;chr14:75746722..75746777,+!p2@FOS!1.87!92.47!FOS;;chrX:106960285..106960299,-!p1@TSC22D3!1.86!1805.41!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!1.85!182.66!NFATC1;;chr14:75988831..75988847,+!p2@BATF!1.85!70.08!BATF;;chr14:35873947..35873965,-!p1@NFKBIA!1.83!3911.45!NFKBIA;;chr7:28725740..28725778,+!p1@CREB5!1.83!557.71!CREB5;;chr2:145271342..145271377,-!p5@ZEB2!1.80!62.61!ZEB2;;chr19:54041669..54041697,+!p2@ZNF331!1.79!61.37!ZNF331;;chr9:102584159..102584174,+!p2@NR4A3!1.78!105.12!NR4A3;;chr2:145277640..145277771,-!p1@ZEB2!1.76!705.12!ZEB2;;chr19:45971060..45971122,+!p3@FOSB!1.76!56.19!FOSB;;chr9:3525727..3525828,-!p2@RFX3!1.74!132.69!RFX3;;chr19:18391615..18391637,-!p5@JUND!1.74!69.25!JUND;;chr3:69788576..69788648,+!p1@MITF!1.73!264.34!MITF;;chr20:50159198..50159299,-!p1@NFATC2!1.72!74.43!NFATC2;;chr3:128205876..128205904,-!p4@GATA2!1.72!51.83!GATA2;;chr3:141150883..141150961,+!p6@ZBTB38!1.68!46.86!ZBTB38;;chr2:61108695..61108753,+!p1@REL!1.66!292.95!REL;;chr12:72056800..72056834,+!p1@THAP2!1.66!60.13!THAP2;;chr8:81397820..81397836,+!p2@ZBTB10!1.66!55.98!ZBTB10;;chr3:39195037..39195069,-!p2@CSRNP1!1.65!258.75!CSRNP1;;chr1:25256756..25256774,-!p1@RUNX3!1.63!76.71!RUNX3;;chr19:45972701..45972774,+!p2@FOSB!1.63!55.56!FOSB;;chr7:50344289..50344323,+!p1@IKZF1!1.62!40.64!IKZF1;;chr14:75746664..75746683,+!p7@FOS!1.62!40.64!FOS;;chr7:50344251..50344288,+!p3@IKZF1!1.62!40.43!IKZF1;;chrX:48644984..48645005,+!p1@GATA1!1.61!39.81!GATA1;;chr1:92951607..92951661,-!p1@GFI1!1.60!38.98!GFI1;;chr3:39195075..39195088,-!p1@CSRNP1!1.59!226.19!CSRNP1;;chr10:35484053..35484076,+!p1@CREM!1.59!91.85!CREM;;chr7:50343634..50343717,+!p2@IKZF1!1.59!37.73!IKZF1;;chr1:59249707..59249727,-!p1@JUN!1.58!1476.38!JUN;;chr19:36391434..36391450,-!p1@NFKBID!1.57!69.66!NFKBID;;chr1:158985493..158985535,+!p4@IFI16!1.56!52.45!IFI16;;chr19:13213511..13213545,-!p2@LYL1!1.55!37.53!LYL1;;chr12:52448420..52448460,+!p5@NR4A1!1.55!34.83!NR4A1;;chr3:63953435..63953499,+!p1@ATXN7!1.55!34.21!ATXN7;;chr10:3827389..3827408,-!p1@KLF6!1.54!2414.54!KLF6;;chr7:28725715..28725727,+!p3@CREB5!1.52!37.32!CREB5;;chr1:47697881..47697910,-!p4@TAL1!1.52!32.14!TAL1;;chr3:128206762..128206781,-!p2@GATA2!1.51!185.97!GATA2;;chr7:138666053..138666146,-!p1@KIAA1549!1.51!124.60!KIAA1549;;chr19:16435705..16435726,+!p3@KLF2!1.51!31.31!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!1.50!39.81!PRDM8;;chr1:204042233..204042249,+!p1@SOX13!1.48!177.89!SOX13;;chr9:102584262..102584276,+!p1@NR4A3!1.48!64.48!NR4A3;;chr6:15401104..15401166,+!p5@JARID2!1.48!29.03!JARID2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.47!1422.89!NFKBIZ;;chr19:16435625..16435682,+!p1@KLF2!1.47!875.75!KLF2;;chr1:59249732..59249749,-!p2@JUN!1.46!320.32!JUN;;chr3:128205779..128205797,-!p5@GATA2!1.46!27.57!GATA2;;chr11:47400078..47400106,-!p1@SPI1!1.45!27.37!SPI1;;chr10:35484090..35484104,+!p6@CREM!1.45!27.16!CREM;;chr2:157189617..157189667,-!p4@NR4A2!1.45!27.16!NR4A2;;chr14:75746340..75746368,+!p3@FOS!1.45!26.95!FOS;;chr4:103422499..103422632,+!p1@NFKB1!1.44!529.93!NFKB1;;chr12:52448338..52448401,+!p7@NR4A1!1.44!26.33!NR4A1;;chr19:12902289..12902307,+!p1@JUNB!1.43!5713.13!JUNB;;chr19:18392422..18392440,-!p1@JUND!1.43!3380.90!JUND;;chr10:104154246..104154347,+!p3@NFKB2!1.42!150.73!NFKB2;;chr1:47695003..47695042,-!p2@TAL1!1.41!24.46!TAL1;;chr7:17338266..17338282,+!p1@AHR!1.40!253.15!AHR;;chr7:17338324..17338341,+!p3@AHR!1.40!78.37!AHR;;chr12:52448213..52448262,+!p6@NR4A1!1.40!24.26!NR4A1;;chr12:124968706..124968748,-!p18@NCOR2!1.40!24.05!NCOR2;;chr10:3827371..3827386,-!p2@KLF6!1.39!192.19!KLF6;;chr13:41593425..41593480,-!p1@ELF1!1.39!144.09!ELF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.39!27.78!ZBTB10;;chr12:52431016..52431071,+!p4@NR4A1!1.39!27.37!NR4A1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!23.22!ZBED1;;chr9:110252035..110252057,-!p1@KLF4!1.36!337.94!KLF4;;chr14:35874077..35874091,-!p8@NFKBIA!1.36!21.98!NFKBIA;;chr14:35872414..35872425,-!p7@NFKBIA!1.35!23.84!NFKBIA;;chr19:6110474..6110551,-!p1@RFX2!1.34!122.32!RFX2;;chr12:52448151..52448200,+!p8@NR4A1!1.34!20.94!NR4A1;;chr14:75746705..75746720,+!p8@FOS!1.34!20.94!FOS;;chr2:208394817..208394834,+!p3@CREB1!1.33!80.44!CREB1;;chr9:102584128..102584144,+!p3@NR4A3!1.33!38.56!NR4A3;;chr6:135502408..135502459,+!p2@MYB!1.32!23.22!MYB;;chr9:135854091..1358541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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor2.CNhs12594.11565-120D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor2.CNhs12594.11565-120D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor2.CNhs12594.11565-120D8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor2.CNhs12594.11565-120D8.hg38.nobarcode.ctss.bed.gz
|id=FF:11565-120D8
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|is_obsolete=
|library_id=CNhs12594
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|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11565
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GCCAAT.11565
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11565
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GCCAAT.11565
|name=Mast cell, donor2
|namespace=FANTOM5
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|rna_box=120
|rna_catalog_number=
|rna_concentration=0.36156
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=BsMC-S
|rna_od260/230=1.9
|rna_od260/280=1.97
|rna_position=D8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120D8
|rna_weight_ug=8.67744
|rnaseq_library_id=SRhi10009.GCCAAT
|sample_age=76
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=mast cell
|sample_collaboration=Sven Guhl (Charite Germany)
|sample_company=
|sample_description=
|sample_dev_stage=50 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=control, untreated cells
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.59424071298258e-226!GO:0043227;membrane-bound organelle;1.64469930523141e-189!GO:0043231;intracellular membrane-bound organelle;3.15402304593814e-189!GO:0043226;organelle;6.89061207971125e-186!GO:0043229;intracellular organelle;2.98200482514491e-185!GO:0005737;cytoplasm;5.40539758600109e-137!GO:0005634;nucleus;1.0014158134473e-104!GO:0043170;macromolecule metabolic process;4.12860845576493e-99!GO:0044422;organelle part;5.34174036377489e-97!GO:0044446;intracellular organelle part;2.65432868722431e-95!GO:0044238;primary metabolic process;1.00798757122661e-92!GO:0044237;cellular metabolic process;6.46568695614955e-91!GO:0044444;cytoplasmic part;1.19175270523713e-85!GO:0005515;protein binding;1.40791817683698e-79!GO:0043283;biopolymer metabolic process;2.67099644764209e-74!GO:0010467;gene expression;3.32397280436358e-65!GO:0032991;macromolecular complex;4.16849728767299e-65!GO:0044428;nuclear part;2.5312335887036e-62!GO:0003723;RNA binding;5.3349052778178e-61!GO:0030529;ribonucleoprotein complex;1.92685717435349e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.34096427177493e-57!GO:0043233;organelle lumen;4.27213656038986e-50!GO:0031974;membrane-enclosed lumen;4.27213656038986e-50!GO:0003676;nucleic acid binding;1.06611993621983e-45!GO:0033036;macromolecule localization;1.23185480227822e-45!GO:0015031;protein transport;1.01824836756074e-44!GO:0019538;protein metabolic process;1.24429913929161e-44!GO:0045184;establishment of protein localization;7.97705297250135e-43!GO:0016070;RNA metabolic process;5.15557121115292e-42!GO:0008104;protein localization;5.60996000211171e-42!GO:0044267;cellular protein metabolic process;8.50426290852592e-42!GO:0044260;cellular macromolecule metabolic process;9.65863580076225e-41!GO:0031981;nuclear lumen;6.4967953306745e-40!GO:0006396;RNA processing;2.20447469479612e-39!GO:0016043;cellular component organization and biogenesis;2.2809110924116e-38!GO:0016071;mRNA metabolic process;8.34249555822421e-38!GO:0008380;RNA splicing;3.5504479630033e-34!GO:0031090;organelle membrane;1.00328432729992e-33!GO:0046907;intracellular transport;2.24970561668021e-33!GO:0006412;translation;3.84568615976986e-33!GO:0005739;mitochondrion;9.28206795761259e-33!GO:0043234;protein complex;5.31150893877631e-32!GO:0006397;mRNA processing;1.73968922964728e-31!GO:0050794;regulation of cellular process;3.59199302619221e-31!GO:0005829;cytosol;1.07324954296702e-29!GO:0005840;ribosome;3.35608156111446e-29!GO:0006886;intracellular protein transport;1.51493352943266e-28!GO:0006996;organelle organization and biogenesis;1.81034346918398e-27!GO:0005654;nucleoplasm;2.49303307110659e-26!GO:0009059;macromolecule biosynthetic process;8.86548897135423e-26!GO:0008134;transcription factor binding;2.08149165521873e-25!GO:0065003;macromolecular complex assembly;2.51316964963182e-25!GO:0031967;organelle envelope;5.96480953116931e-25!GO:0031975;envelope;9.61216897028343e-25!GO:0003735;structural constituent of ribosome;1.0904198368002e-24!GO:0000166;nucleotide binding;1.50081759482282e-24!GO:0005681;spliceosome;1.91440047513886e-24!GO:0006259;DNA metabolic process;2.64850016080501e-24!GO:0050789;regulation of biological process;4.77008759430652e-24!GO:0051649;establishment of cellular localization;1.41921891885642e-23!GO:0033279;ribosomal subunit;2.77049469071059e-23!GO:0051641;cellular localization;4.96481753780073e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.7639110274499e-22!GO:0022607;cellular component assembly;2.12436341770026e-22!GO:0019222;regulation of metabolic process;2.76806626644037e-22!GO:0044429;mitochondrial part;1.16505891646341e-21!GO:0044451;nucleoplasm part;2.35910473282042e-21!GO:0009058;biosynthetic process;2.83273171682636e-21!GO:0043412;biopolymer modification;2.83273171682636e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.59106605821774e-21!GO:0044249;cellular biosynthetic process;1.30012484280133e-20!GO:0006464;protein modification process;2.39372896517122e-19!GO:0043687;post-translational protein modification;3.63871229170815e-19!GO:0006512;ubiquitin cycle;5.05546535173179e-19!GO:0044445;cytosolic part;5.83105420228938e-19!GO:0031323;regulation of cellular metabolic process;9.32343669504675e-19!GO:0032553;ribonucleotide binding;2.36908681931321e-18!GO:0032555;purine ribonucleotide binding;2.36908681931321e-18!GO:0048770;pigment granule;4.01943893270383e-18!GO:0042470;melanosome;4.01943893270383e-18!GO:0043228;non-membrane-bound organelle;4.07618076302351e-18!GO:0043232;intracellular non-membrane-bound organelle;4.07618076302351e-18!GO:0006350;transcription;6.18578869589542e-18!GO:0065007;biological regulation;1.4247180353463e-17!GO:0017111;nucleoside-triphosphatase activity;3.02018469242128e-17!GO:0003712;transcription cofactor activity;3.05683122699033e-17!GO:0016462;pyrophosphatase activity;3.44167483247797e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.55564299576419e-17!GO:0010468;regulation of gene expression;4.55564299576419e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;5.30169764253603e-17!GO:0048523;negative regulation of cellular process;7.626818112501e-17!GO:0017076;purine nucleotide binding;8.39193788648348e-17!GO:0012501;programmed cell death;1.07159725400716e-16!GO:0006915;apoptosis;1.66176556795806e-16!GO:0006366;transcription from RNA polymerase II promoter;4.39055224135522e-16!GO:0005740;mitochondrial envelope;4.44519167986544e-16!GO:0008219;cell death;5.74310100499927e-16!GO:0016265;death;5.74310100499927e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.95523120723689e-16!GO:0016192;vesicle-mediated transport;8.03513441884603e-16!GO:0032774;RNA biosynthetic process;9.5835851371838e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.01507606446362e-15!GO:0006351;transcription, DNA-dependent;1.20691774179407e-15!GO:0019941;modification-dependent protein catabolic process;1.56901397491326e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.56901397491326e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.60585007134605e-15!GO:0048519;negative regulation of biological process;1.89638948646272e-15!GO:0044257;cellular protein catabolic process;1.90345206466849e-15!GO:0022618;protein-RNA complex assembly;2.66867622351322e-15!GO:0031966;mitochondrial membrane;4.2351262026445e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.64877818430449e-15!GO:0012505;endomembrane system;5.91398865978443e-15!GO:0005794;Golgi apparatus;6.61370667446669e-15!GO:0019866;organelle inner membrane;1.00760850952438e-14!GO:0016874;ligase activity;1.59283532542074e-14!GO:0006605;protein targeting;2.48448632533516e-14!GO:0007049;cell cycle;2.76536124274125e-14!GO:0045449;regulation of transcription;2.94960483503019e-14!GO:0006323;DNA packaging;3.10503050863985e-14!GO:0044265;cellular macromolecule catabolic process;3.30639305996294e-14!GO:0006119;oxidative phosphorylation;4.13361602295529e-14!GO:0016604;nuclear body;7.89758971248487e-14!GO:0006793;phosphorus metabolic process;8.42461712163362e-14!GO:0006796;phosphate metabolic process;8.42461712163362e-14!GO:0006355;regulation of transcription, DNA-dependent;2.23387796135004e-13!GO:0043285;biopolymer catabolic process;2.28223840621492e-13!GO:0005524;ATP binding;3.10585952792735e-13!GO:0051276;chromosome organization and biogenesis;3.71243707929605e-13!GO:0005743;mitochondrial inner membrane;5.10920938097567e-13!GO:0005730;nucleolus;5.37006314922621e-13!GO:0006457;protein folding;7.98276818438024e-13!GO:0032559;adenyl ribonucleotide binding;1.07119019142791e-12!GO:0015934;large ribosomal subunit;1.21845390778329e-12!GO:0016568;chromatin modification;1.32869802901746e-12!GO:0016607;nuclear speck;1.76350204907567e-12!GO:0008270;zinc ion binding;2.6043162875919e-12!GO:0008135;translation factor activity, nucleic acid binding;2.92455565013985e-12!GO:0007242;intracellular signaling cascade;4.83917005690231e-12!GO:0006913;nucleocytoplasmic transport;5.58637373641254e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.84116620873007e-12!GO:0007243;protein kinase cascade;6.20240359372068e-12!GO:0051169;nuclear transport;9.50457832411708e-12!GO:0030163;protein catabolic process;1.2443188217145e-11!GO:0016310;phosphorylation;1.40949718589908e-11!GO:0015935;small ribosomal subunit;1.72286226975378e-11!GO:0044455;mitochondrial membrane part;2.2064950078604e-11!GO:0006974;response to DNA damage stimulus;2.31638134792937e-11!GO:0048193;Golgi vesicle transport;2.64121311775877e-11!GO:0030554;adenyl nucleotide binding;3.06117549133541e-11!GO:0016563;transcription activator activity;3.10022446710691e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.6478323061353e-11!GO:0000375;RNA splicing, via transesterification reactions;3.6478323061353e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.6478323061353e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.10977543864473e-11!GO:0003713;transcription coactivator activity;1.01492994833881e-10!GO:0003677;DNA binding;1.36278368909832e-10!GO:0007264;small GTPase mediated signal transduction;1.44920113390791e-10!GO:0009057;macromolecule catabolic process;1.88174999913028e-10!GO:0005768;endosome;2.39053535243736e-10!GO:0016564;transcription repressor activity;2.61179567261364e-10!GO:0031324;negative regulation of cellular metabolic process;4.92271589921727e-10!GO:0006446;regulation of translational initiation;5.51915872351735e-10!GO:0006413;translational initiation;6.34952815007714e-10!GO:0005635;nuclear envelope;7.33898227983064e-10!GO:0022402;cell cycle process;1.01272215992625e-09!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.39745260510386e-09!GO:0042981;regulation of apoptosis;1.65828017756993e-09!GO:0016481;negative regulation of transcription;2.18373047637831e-09!GO:0051082;unfolded protein binding;2.25483872103667e-09!GO:0003743;translation initiation factor activity;2.25483872103667e-09!GO:0043067;regulation of programmed cell death;2.26362213168088e-09!GO:0051726;regulation of cell cycle;2.37295160667814e-09!GO:0000074;regulation of progression through cell cycle;3.2643360750942e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.37397444179183e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.52895268370517e-09!GO:0005746;mitochondrial respiratory chain;3.96564282671312e-09!GO:0008639;small protein conjugating enzyme activity;4.04974017877883e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.11976771627141e-09!GO:0009892;negative regulation of metabolic process;4.25953689559858e-09!GO:0031965;nuclear membrane;4.42264113241258e-09!GO:0003924;GTPase activity;4.91980508009886e-09!GO:0006281;DNA repair;5.04810840803541e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.11942920009508e-09!GO:0004842;ubiquitin-protein ligase activity;8.26434259184321e-09!GO:0017038;protein import;9.69277649688767e-09!GO:0005525;GTP binding;1.27951917621962e-08!GO:0046914;transition metal ion binding;1.28412520331598e-08!GO:0019899;enzyme binding;1.67850577631624e-08!GO:0019787;small conjugating protein ligase activity;1.75383273192082e-08!GO:0006333;chromatin assembly or disassembly;2.50577663423263e-08!GO:0004386;helicase activity;2.7909903013416e-08!GO:0045786;negative regulation of progression through cell cycle;2.83150272567376e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.83150272567376e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.00143132913762e-08!GO:0043566;structure-specific DNA binding;3.09570055109748e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.62365863101354e-08!GO:0065004;protein-DNA complex assembly;3.77527109425505e-08!GO:0044248;cellular catabolic process;3.84710741483663e-08!GO:0005783;endoplasmic reticulum;4.45643443575008e-08!GO:0050136;NADH dehydrogenase (quinone) activity;4.54029354991426e-08!GO:0003954;NADH dehydrogenase activity;4.54029354991426e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.54029354991426e-08!GO:0008565;protein transporter activity;4.62478259951083e-08!GO:0031988;membrane-bound vesicle;5.52055481577713e-08!GO:0051246;regulation of protein metabolic process;5.86768560592217e-08!GO:0005793;ER-Golgi intermediate compartment;7.17663981133388e-08!GO:0050657;nucleic acid transport;7.64441994780868e-08!GO:0051236;establishment of RNA localization;7.64441994780868e-08!GO:0050658;RNA transport;7.64441994780868e-08!GO:0031982;vesicle;7.89569862896104e-08!GO:0005694;chromosome;8.45231322012073e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.67558662537318e-08!GO:0032561;guanyl ribonucleotide binding;9.17985323109084e-08!GO:0019001;guanyl nucleotide binding;9.17985323109084e-08!GO:0009719;response to endogenous stimulus;1.0830501448997e-07!GO:0031980;mitochondrial lumen;1.13406892838256e-07!GO:0005759;mitochondrial matrix;1.13406892838256e-07!GO:0006403;RNA localization;1.22513751068868e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.32408814338598e-07!GO:0016887;ATPase activity;1.45278850508363e-07!GO:0019829;cation-transporting ATPase activity;1.45881287271057e-07!GO:0042623;ATPase activity, coupled;1.72769653344219e-07!GO:0044453;nuclear membrane part;1.80073499740587e-07!GO:0044431;Golgi apparatus part;2.04961314056327e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.08361062244258e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.30660633674548e-07!GO:0008026;ATP-dependent helicase activity;2.46532357982471e-07!GO:0051170;nuclear import;2.71292189793597e-07!GO:0016740;transferase activity;3.22587317795799e-07!GO:0006606;protein import into nucleus;3.3158185833101e-07!GO:0016881;acid-amino acid ligase activity;3.39087959426864e-07!GO:0042254;ribosome biogenesis and assembly;3.78995799770815e-07!GO:0031410;cytoplasmic vesicle;3.81852137816934e-07!GO:0016197;endosome transport;4.24219395330202e-07!GO:0043069;negative regulation of programmed cell death;4.48773599655112e-07!GO:0065009;regulation of a molecular function;4.53213340453686e-07!GO:0051789;response to protein stimulus;4.53213340453686e-07!GO:0006986;response to unfolded protein;4.53213340453686e-07!GO:0003714;transcription corepressor activity;4.90931897285331e-07!GO:0045892;negative regulation of transcription, DNA-dependent;5.00071748218505e-07!GO:0042775;organelle ATP synthesis coupled electron transport;5.19778321476441e-07!GO:0042773;ATP synthesis coupled electron transport;5.19778321476441e-07!GO:0030120;vesicle coat;5.51968401571643e-07!GO:0030662;coated vesicle membrane;5.51968401571643e-07!GO:0004674;protein serine/threonine kinase activity;6.71130891202379e-07!GO:0043066;negative regulation of apoptosis;7.51168893687546e-07!GO:0003697;single-stranded DNA binding;7.98293166358974e-07!GO:0005773;vacuole;8.30484284899493e-07!GO:0030964;NADH dehydrogenase complex (quinone);8.92766394019453e-07!GO:0045271;respiratory chain complex I;8.92766394019453e-07!GO:0005747;mitochondrial respiratory chain complex I;8.92766394019453e-07!GO:0015986;ATP synthesis coupled proton transport;9.27711426816765e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.27711426816765e-07!GO:0009966;regulation of signal transduction;9.33241243161134e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.57701323778144e-07!GO:0006916;anti-apoptosis;1.02913526858054e-06!GO:0005643;nuclear pore;1.14962735389307e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.258988964214e-06!GO:0030695;GTPase regulator activity;1.35825899253119e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.62273353663316e-06!GO:0048522;positive regulation of cellular process;1.77183311192773e-06!GO:0006461;protein complex assembly;1.82374633196903e-06!GO:0051028;mRNA transport;1.85228942448828e-06!GO:0048475;coated membrane;1.85492984714731e-06!GO:0030117;membrane coat;1.85492984714731e-06!GO:0006260;DNA replication;2.08904313639987e-06!GO:0044427;chromosomal part;2.45059221523291e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.4784627393759e-06!GO:0000785;chromatin;3.35925847253762e-06!GO:0044432;endoplasmic reticulum part;4.45680307074679e-06!GO:0007265;Ras protein signal transduction;5.46398864250649e-06!GO:0005813;centrosome;5.46398864250649e-06!GO:0016301;kinase activity;8.09437921705215e-06!GO:0044440;endosomal part;8.23213444430972e-06!GO:0010008;endosome membrane;8.23213444430972e-06!GO:0000323;lytic vacuole;8.41756844198651e-06!GO:0005764;lysosome;8.41756844198651e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.54258333560048e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.58928382277961e-06!GO:0007005;mitochondrion organization and biogenesis;1.02150449235842e-05!GO:0015630;microtubule cytoskeleton;1.18166197942619e-05!GO:0005769;early endosome;1.19230812479778e-05!GO:0006364;rRNA processing;1.24387799131458e-05!GO:0003724;RNA helicase activity;1.35847512050793e-05!GO:0016072;rRNA metabolic process;1.42364150177971e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.47399080246921e-05!GO:0005770;late endosome;1.48049101367234e-05!GO:0005798;Golgi-associated vesicle;1.67097725046286e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.70998864945568e-05!GO:0051427;hormone receptor binding;1.73407363645787e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.74010077758576e-05!GO:0005083;small GTPase regulator activity;1.74010077758576e-05!GO:0006754;ATP biosynthetic process;1.75800281212258e-05!GO:0006753;nucleoside phosphate metabolic process;1.75800281212258e-05!GO:0006164;purine nucleotide biosynthetic process;1.90145194884818e-05!GO:0009967;positive regulation of signal transduction;1.96699310964484e-05!GO:0006163;purine nucleotide metabolic process;2.04238974241763e-05!GO:0051186;cofactor metabolic process;2.05998137617794e-05!GO:0006402;mRNA catabolic process;2.13355759457701e-05!GO:0008047;enzyme activator activity;2.33818214530268e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.54501495444928e-05!GO:0031252;leading edge;2.73488770935855e-05!GO:0009150;purine ribonucleotide metabolic process;2.85951924816756e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.90186744920643e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.90186744920643e-05!GO:0035257;nuclear hormone receptor binding;2.95528747519199e-05!GO:0046930;pore complex;3.27316340232642e-05!GO:0032446;protein modification by small protein conjugation;3.3884367013567e-05!GO:0050790;regulation of catalytic activity;3.42321628322869e-05!GO:0000139;Golgi membrane;3.69842550525912e-05!GO:0005096;GTPase activator activity;3.90515741606199e-05!GO:0000245;spliceosome assembly;3.90515741606199e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;3.91489760555273e-05!GO:0005815;microtubule organizing center;4.16011873270391e-05!GO:0009259;ribonucleotide metabolic process;4.25053691618947e-05!GO:0016363;nuclear matrix;4.4593186171541e-05!GO:0065002;intracellular protein transport across a membrane;4.56549708719263e-05!GO:0009260;ribonucleotide biosynthetic process;4.75234824134503e-05!GO:0009142;nucleoside triphosphate biosynthetic process;4.92438041948635e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.92438041948635e-05!GO:0006613;cotranslational protein targeting to membrane;5.6859223736864e-05!GO:0033673;negative regulation of kinase activity;6.02141643574504e-05!GO:0006469;negative regulation of protein kinase activity;6.02141643574504e-05!GO:0046034;ATP metabolic process;6.07738012530892e-05!GO:0048518;positive regulation of biological process;6.25377753618033e-05!GO:0005761;mitochondrial ribosome;6.28535591366694e-05!GO:0000313;organellar ribosome;6.28535591366694e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.38026882224991e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.38026882224991e-05!GO:0016567;protein ubiquitination;6.41067156291669e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.32653974215177e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.60133233482815e-05!GO:0005789;endoplasmic reticulum membrane;8.75891096807935e-05!GO:0000278;mitotic cell cycle;9.05461449199398e-05!GO:0000151;ubiquitin ligase complex;9.39535984125586e-05!GO:0009199;ribonucleoside triphosphate metabolic process;0.000101128923417118!GO:0051168;nuclear export;0.000119437779397759!GO:0051348;negative regulation of transferase activity;0.000145841796372822!GO:0016787;hydrolase activity;0.000155445347376318!GO:0003690;double-stranded DNA binding;0.000155910325752456!GO:0003729;mRNA binding;0.00015644340260932!GO:0008186;RNA-dependent ATPase activity;0.000158234608963689!GO:0009141;nucleoside triphosphate metabolic process;0.000161061149252475!GO:0006399;tRNA metabolic process;0.000165725291825407!GO:0007050;cell cycle arrest;0.000175557186130496!GO:0045259;proton-transporting ATP synthase complex;0.000182704293190502!GO:0006732;coenzyme metabolic process;0.000191384297466806!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000213502579555006!GO:0004812;aminoacyl-tRNA ligase activity;0.000213502579555006!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000213502579555006!GO:0031497;chromatin assembly;0.000221250958221629!GO:0006334;nucleosome assembly;0.000232224803106851!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000234687629990059!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000257411361129426!GO:0008654;phospholipid biosynthetic process;0.000280697230654288!GO:0016779;nucleotidyltransferase activity;0.000318688049681905!GO:0045333;cellular respiration;0.000320487300747594!GO:0009060;aerobic respiration;0.000323139423662027!GO:0003702;RNA polymerase II transcription factor activity;0.000328540532991646!GO:0006650;glycerophospholipid metabolic process;0.000336160566282974!GO:0008234;cysteine-type peptidase activity;0.000336160566282974!GO:0048471;perinuclear region of cytoplasm;0.000337307560182531!GO:0030384;phosphoinositide metabolic process;0.000345238300152915!GO:0006401;RNA catabolic process;0.00036034508177077!GO:0043038;amino acid activation;0.000375750767946066!GO:0006418;tRNA aminoacylation for protein translation;0.000375750767946066!GO:0043039;tRNA aminoacylation;0.000375750767946066!GO:0006468;protein amino acid phosphorylation;0.000400184666626004!GO:0045893;positive regulation of transcription, DNA-dependent;0.000415064809485456!GO:0004004;ATP-dependent RNA helicase activity;0.000478323685671429!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000497757437449042!GO:0001726;ruffle;0.000504716925621936!GO:0008287;protein serine/threonine phosphatase complex;0.000509023604390667!GO:0030518;steroid hormone receptor signaling pathway;0.00052079449407827!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000553488902290068!GO:0006352;transcription initiation;0.000556696453160711!GO:0006612;protein targeting to membrane;0.000560717238419223!GO:0015631;tubulin binding;0.00056466678962309!GO:0008361;regulation of cell size;0.000569782129129821!GO:0006950;response to stress;0.00058210634962512!GO:0045941;positive regulation of transcription;0.000585105900258287!GO:0051188;cofactor biosynthetic process;0.000661586100047867!GO:0030029;actin filament-based process;0.000735380894101699!GO:0005839;proteasome core complex (sensu Eukaryota);0.000751146355546669!GO:0060090;molecular adaptor activity;0.000770548543092723!GO:0016251;general RNA polymerase II transcription factor activity;0.000771902704026584!GO:0030659;cytoplasmic vesicle membrane;0.000793251773494603!GO:0030658;transport vesicle membrane;0.000830203712891832!GO:0005667;transcription factor complex;0.000834593315741807!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000885964163185512!GO:0016049;cell growth;0.000906699524027854!GO:0012506;vesicle membrane;0.000906699524027854!GO:0009056;catabolic process;0.000912307226732365!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00102042784554047!GO:0006643;membrane lipid metabolic process;0.00108218366381194!GO:0005885;Arp2/3 protein complex;0.00110919421841439!GO:0009055;electron carrier activity;0.00115142109632835!GO:0006891;intra-Golgi vesicle-mediated transport;0.00125910110642381!GO:0006417;regulation of translation;0.00129575021374168!GO:0030521;androgen receptor signaling pathway;0.00135533370217746!GO:0006752;group transfer coenzyme metabolic process;0.00153515950337274!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00160459933568894!GO:0031901;early endosome membrane;0.00162630814215256!GO:0051338;regulation of transferase activity;0.00163474403243867!GO:0001558;regulation of cell growth;0.00164843757517265!GO:0030522;intracellular receptor-mediated signaling pathway;0.0017147714073648!GO:0043623;cellular protein complex assembly;0.00185417529588035!GO:0043065;positive regulation of apoptosis;0.00186011119858098!GO:0043549;regulation of kinase activity;0.00198007844966572!GO:0044433;cytoplasmic vesicle part;0.00201277391186168!GO:0008017;microtubule binding;0.00201729387824536!GO:0046519;sphingoid metabolic process;0.00204354280893873!GO:0048468;cell development;0.00207826870470615!GO:0033116;ER-Golgi intermediate compartment membrane;0.00214622283421082!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00214917848970085!GO:0004672;protein kinase activity;0.00222026039348399!GO:0004298;threonine endopeptidase activity;0.00225244367118859!GO:0019783;small conjugating protein-specific protease activity;0.0023086749736468!GO:0005099;Ras GTPase activator activity;0.00233044621980346!GO:0046467;membrane lipid biosynthetic process;0.00241173506052957!GO:0043068;positive regulation of programmed cell death;0.00244937525870658!GO:0045859;regulation of protein kinase activity;0.00253263322045829!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00264327515180421!GO:0004843;ubiquitin-specific protease activity;0.00264327515180421!GO:0009108;coenzyme biosynthetic process;0.00275422977493368!GO:0006261;DNA-dependent DNA replication;0.00277592667424571!GO:0045792;negative regulation of cell size;0.00279199680599245!GO:0043021;ribonucleoprotein binding;0.00289591912091963!GO:0030133;transport vesicle;0.00299670472432598!GO:0006672;ceramide metabolic process;0.00302895351019157!GO:0007034;vacuolar transport;0.00307330631180116!GO:0030660;Golgi-associated vesicle membrane;0.00308740989278397!GO:0005741;mitochondrial outer membrane;0.00314367265566333!GO:0051252;regulation of RNA metabolic process;0.00322370989426186!GO:0016044;membrane organization and biogenesis;0.00323036479244472!GO:0006818;hydrogen transport;0.00323086259192328!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00323461058286175!GO:0005774;vacuolar membrane;0.00334580957998457!GO:0017091;AU-rich element binding;0.00338844172793967!GO:0050779;RNA destabilization;0.00338844172793967!GO:0000289;poly(A) tail shortening;0.00338844172793967!GO:0006099;tricarboxylic acid cycle;0.00341322900682253!GO:0046356;acetyl-CoA catabolic process;0.00341322900682253!GO:0030308;negative regulation of cell growth;0.00341576463597994!GO:0031326;regulation of cellular biosynthetic process;0.00341576463597994!GO:0046983;protein dimerization activity;0.00342856042600085!GO:0031072;heat shock protein binding;0.00346443726101539!GO:0015992;proton transport;0.00351733090644238!GO:0043407;negative regulation of MAP kinase activity;0.00354276959037011!GO:0006917;induction of apoptosis;0.00358986484490209!GO:0035258;steroid hormone receptor binding;0.00359631216713643!GO:0042802;identical protein binding;0.00377148518909378!GO:0031902;late endosome membrane;0.00401892373914499!GO:0016311;dephosphorylation;0.00403850168001265!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00414589279420827!GO:0043488;regulation of mRNA stability;0.00439245189529182!GO:0043487;regulation of RNA stability;0.00439245189529182!GO:0005057;receptor signaling protein activity;0.00439332195319274!GO:0008286;insulin receptor signaling pathway;0.00446618358151157!GO:0006414;translational elongation;0.00458890372324879!GO:0009889;regulation of biosynthetic process;0.00472499714834146!GO:0046854;phosphoinositide phosphorylation;0.00474176471094892!GO:0018193;peptidyl-amino acid modification;0.00474176471094892!GO:0004261;cathepsin G activity;0.00479710972381035!GO:0030127;COPII vesicle coat;0.00479710972381035!GO:0012507;ER to Golgi transport vesicle membrane;0.00479710972381035!GO:0022403;cell cycle phase;0.00491749359710121!GO:0005048;signal sequence binding;0.00502058119036184!GO:0012502;induction of programmed cell death;0.00502058119036184!GO:0045926;negative regulation of growth;0.00502058119036184!GO:0030134;ER to Golgi transport vesicle;0.00511587968855993!GO:0030118;clathrin coat;0.00530067899091949!GO:0006338;chromatin remodeling;0.00535395390361463!GO:0004221;ubiquitin thiolesterase activity;0.00535395390361463!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00586117983741223!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00591378886568522!GO:0015399;primary active transmembrane transporter activity;0.00591378886568522!GO:0006084;acetyl-CoA metabolic process;0.006049247320525!GO:0043086;negative regulation of catalytic activity;0.00608267366479181!GO:0005070;SH3/SH2 adaptor activity;0.00613427034300774!GO:0045045;secretory pathway;0.00614861501459481!GO:0032940;secretion by cell;0.00620707000843579!GO:0051329;interphase of mitotic cell cycle;0.00631680610048372!GO:0030663;COPI coated vesicle membrane;0.00686879622661918!GO:0030126;COPI vesicle coat;0.00686879622661918!GO:0051301;cell division;0.00690532021934962!GO:0009893;positive regulation of metabolic process;0.00715078802973209!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00727497163534662!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00727497163534662!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00727497163534662!GO:0048500;signal recognition particle;0.0073097505489587!GO:0019210;kinase inhibitor activity;0.00744879240203738!GO:0030041;actin filament polymerization;0.00747159561190368!GO:0043087;regulation of GTPase activity;0.00767879544198208!GO:0004860;protein kinase inhibitor activity;0.00767879544198208!GO:0005874;microtubule;0.0078437387753509!GO:0031968;organelle outer membrane;0.00788046715768225!GO:0004722;protein serine/threonine phosphatase activity;0.00789392394149124!GO:0016859;cis-trans isomerase activity;0.00799103369739764!GO:0051325;interphase;0.00799103369739764!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.00816214298785901!GO:0019867;outer membrane;0.00840944725916958!GO:0006611;protein export from nucleus;0.0086251371777571!GO:0046474;glycerophospholipid biosynthetic process;0.00866320643052182!GO:0008092;cytoskeletal protein binding;0.00889045147323023!GO:0003746;translation elongation factor activity;0.00893875920776291!GO:0022415;viral reproductive process;0.00915530166530613!GO:0003899;DNA-directed RNA polymerase activity;0.00923510264015045!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.009456064794699!GO:0035035;histone acetyltransferase binding;0.00952848965128673!GO:0040008;regulation of growth;0.00963943883106083!GO:0046966;thyroid hormone receptor binding;0.00963943883106083!GO:0051056;regulation of small GTPase mediated signal transduction;0.00987489805684762!GO:0044437;vacuolar part;0.00997138854595824!GO:0046834;lipid phosphorylation;0.0102379302919629!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0103385315749984!GO:0019843;rRNA binding;0.0103923291121253!GO:0007010;cytoskeleton organization and biogenesis;0.0105515691011034!GO:0016790;thiolester hydrolase activity;0.0105515691011034!GO:0051087;chaperone binding;0.0106932020291468!GO:0008637;apoptotic mitochondrial changes;0.0107748522086698!GO:0030867;rough endoplasmic reticulum membrane;0.0108912166740733!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0110118839182452!GO:0001516;prostaglandin biosynthetic process;0.0110693813596752!GO:0046457;prostanoid biosynthetic process;0.0110693813596752!GO:0016584;nucleosome positioning;0.0112375029866867!GO:0008632;apoptotic program;0.0112457904135055!GO:0030137;COPI-coated vesicle;0.0113089213252734!GO:0008333;endosome to lysosome transport;0.0114876283260267!GO:0022890;inorganic cation transmembrane transporter activity;0.0117142882083964!GO:0051336;regulation of hydrolase activity;0.0117309861357639!GO:0006470;protein amino acid dephosphorylation;0.0125720012408871!GO:0000118;histone deacetylase complex;0.0126136257864598!GO:0030119;AP-type membrane coat adaptor complex;0.0135694249295152!GO:0045746;negative regulation of Notch signaling pathway;0.0137015848394876!GO:0006839;mitochondrial transport;0.014180945854183!GO:0008139;nuclear localization sequence binding;0.0141910511963321!GO:0003682;chromatin binding;0.0143526934301626!GO:0040029;regulation of gene expression, epigenetic;0.0144209614676586!GO:0046489;phosphoinositide biosynthetic process;0.0144537690714679!GO:0007040;lysosome organization and biogenesis;0.0144537690714679!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0144899428661741!GO:0045047;protein targeting to ER;0.0144899428661741!GO:0031625;ubiquitin protein ligase binding;0.0146726774015399!GO:0046822;regulation of nucleocytoplasmic transport;0.0148290407484614!GO:0005637;nuclear inner membrane;0.01484000942456!GO:0048487;beta-tubulin binding;0.0152262714589684!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0154878219096084!GO:0009109;coenzyme catabolic process;0.0156615851966579!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0158418495131737!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0160578696016161!GO:0007041;lysosomal transport;0.0160578696016161!GO:0005765;lysosomal membrane;0.0160578696016161!GO:0006376;mRNA splice site selection;0.016425292965895!GO:0000389;nuclear mRNA 3'-splice site recognition;0.016425292965895!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0166432266087761!GO:0022406;membrane docking;0.0167200483160292!GO:0048278;vesicle docking;0.0167200483160292!GO:0006509;membrane protein ectodomain proteolysis;0.0168033615553749!GO:0033619;membrane protein proteolysis;0.0168033615553749!GO:0051059;NF-kappaB binding;0.0171057332929923!GO:0008250;oligosaccharyl transferase complex;0.0176387634823899!GO:0005791;rough endoplasmic reticulum;0.0179736064277446!GO:0030258;lipid modification;0.0180559411329347!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0180559411329347!GO:0005942;phosphoinositide 3-kinase complex;0.0180918204764869!GO:0006661;phosphatidylinositol biosynthetic process;0.01839258986836!GO:0051098;regulation of binding;0.0186293038008916!GO:0006644;phospholipid metabolic process;0.0187805375483287!GO:0004576;oligosaccharyl transferase activity;0.0188069476285981!GO:0006405;RNA export from nucleus;0.0189066899119704!GO:0009266;response to temperature stimulus;0.0191521888876666!GO:0006383;transcription from RNA polymerase III promoter;0.0192630355628642!GO:0030880;RNA polymerase complex;0.0199428066669629!GO:0050681;androgen receptor binding;0.0200039173556452!GO:0046578;regulation of Ras protein signal transduction;0.0200336618255106!GO:0051052;regulation of DNA metabolic process;0.0202066695675034!GO:0006904;vesicle docking during exocytosis;0.0202366715960353!GO:0008312;7S RNA binding;0.0204487698726431!GO:0006354;RNA elongation;0.020466140270224!GO:0051187;cofactor catabolic process;0.0205415658954162!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0207615581982993!GO:0030176;integral to endoplasmic reticulum membrane;0.0212719862074009!GO:0030131;clathrin adaptor complex;0.0223207335255278!GO:0000209;protein polyubiquitination;0.0225955628563478!GO:0030125;clathrin vesicle coat;0.0233215835803619!GO:0030665;clathrin coated vesicle membrane;0.0233215835803619!GO:0050811;GABA receptor binding;0.0233352939565932!GO:0046456;icosanoid biosynthetic process;0.0237298707405886!GO:0000188;inactivation of MAPK activity;0.0240010203153964!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0244783544527273!GO:0031325;positive regulation of cellular metabolic process;0.0251017650752075!GO:0005657;replication fork;0.0251898032387204!GO:0043492;ATPase activity, coupled to movement of substances;0.0252909146593295!GO:0005669;transcription factor TFIID complex;0.0254106679392311!GO:0000059;protein import into nucleus, docking;0.0254106679392311!GO:0006897;endocytosis;0.0254106679392311!GO:0010324;membrane invagination;0.0254106679392311!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0254191116229668!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0261126715720002!GO:0008276;protein methyltransferase activity;0.0261126715720002!GO:0018196;peptidyl-asparagine modification;0.0261126715720002!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0261126715720002!GO:0006984;ER-nuclear signaling pathway;0.0261126715720002!GO:0003684;damaged DNA binding;0.0261126715720002!GO:0033367;protein localization in mast cell secretory granule;0.0261126715720002!GO:0033365;protein localization in organelle;0.0261126715720002!GO:0033371;T cell secretory granule organization and biogenesis;0.0261126715720002!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0261126715720002!GO:0033375;protease localization in T cell secretory granule;0.0261126715720002!GO:0042629;mast cell granule;0.0261126715720002!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0261126715720002!GO:0033364;mast cell secretory granule organization and biogenesis;0.0261126715720002!GO:0033380;granzyme B localization in T cell secretory granule;0.0261126715720002!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0261126715720002!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0261126715720002!GO:0033368;protease localization in mast cell secretory granule;0.0261126715720002!GO:0033366;protein localization in secretory granule;0.0261126715720002!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0261126715720002!GO:0033374;protein localization in T cell secretory granule;0.0261126715720002!GO:0046488;phosphatidylinositol metabolic process;0.0262005861163805!GO:0033549;MAP kinase phosphatase activity;0.0263271699121352!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0263271699121352!GO:0005095;GTPase inhibitor activity;0.0265221112454735!GO:0008154;actin polymerization and/or depolymerization;0.0269765233824172!GO:0005020;stem cell factor receptor activity;0.0270116958264184!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0274722645320161!GO:0000428;DNA-directed RNA polymerase complex;0.0274722645320161!GO:0031647;regulation of protein stability;0.0277291262248243!GO:0016791;phosphoric monoester hydrolase activity;0.0279971776029956!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0286983044229952!GO:0035004;phosphoinositide 3-kinase activity;0.0288695000185488!GO:0016303;1-phosphatidylinositol-3-kinase activity;0.0288695000185488!GO:0003711;transcription elongation regulator activity;0.0305290364209053!GO:0005684;U2-dependent spliceosome;0.0306461300605883!GO:0016279;protein-lysine N-methyltransferase activity;0.0309346112971381!GO:0018024;histone-lysine N-methyltransferase activity;0.0309346112971381!GO:0016278;lysine N-methyltransferase activity;0.0309346112971381!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0311216359948663!GO:0045646;regulation of erythrocyte differentiation;0.0312406655682956!GO:0030218;erythrocyte differentiation;0.0314424543075452!GO:0007004;telomere maintenance via telomerase;0.0314424543075452!GO:0004721;phosphoprotein phosphatase activity;0.0320186575072157!GO:0000087;M phase of mitotic cell cycle;0.0325829790306075!GO:0007030;Golgi organization and biogenesis;0.0326414795020251!GO:0035026;leading edge cell differentiation;0.0328003036517595!GO:0004527;exonuclease activity;0.0330294648985224!GO:0030027;lamellipodium;0.0330294648985224!GO:0016570;histone modification;0.0330294648985224!GO:0019904;protein domain specific binding;0.033127470431672!GO:0000082;G1/S transition of mitotic cell cycle;0.0336185497766059!GO:0016569;covalent chromatin modification;0.0338819973613473!GO:0008629;induction of apoptosis by intracellular signals;0.0341567100247935!GO:0007266;Rho protein signal transduction;0.0347003945178138!GO:0045576;mast cell activation;0.0349648768194382!GO:0043022;ribosome binding;0.0355152261074553!GO:0006607;NLS-bearing substrate import into nucleus;0.0355152261074553!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0357193185408279!GO:0005819;spindle;0.0359152615278879!GO:0007067;mitosis;0.036789966728092!GO:0000159;protein phosphatase type 2A complex;0.0368041075990456!GO:0045454;cell redox homeostasis;0.0368327572033158!GO:0042026;protein refolding;0.0375359808354314!GO:0031301;integral to organelle membrane;0.0375359808354314!GO:0005762;mitochondrial large ribosomal subunit;0.0375359808354314!GO:0000315;organellar large ribosomal subunit;0.0375359808354314!GO:0007033;vacuole organization and biogenesis;0.037548694367117!GO:0019377;glycolipid catabolic process;0.0375630913272538!GO:0006665;sphingolipid metabolic process;0.0375630913272538!GO:0046426;negative regulation of JAK-STAT cascade;0.037655292620109!GO:0008601;protein phosphatase type 2A regulator activity;0.0381452957729882!GO:0047485;protein N-terminus binding;0.0382851870276983!GO:0019901;protein kinase binding;0.0383931691777613!GO:0008610;lipid biosynthetic process;0.0385196611208245!GO:0005869;dynactin complex;0.0387083902105061!GO:0006892;post-Golgi vesicle-mediated transport;0.0388735365502106!GO:0005484;SNAP receptor activity;0.0394496327097433!GO:0030145;manganese ion binding;0.0397248456858053!GO:0030503;regulation of cell redox homeostasis;0.0402317975943686!GO:0051235;maintenance of localization;0.0403373842013737!GO:0001727;lipid kinase activity;0.0405185814997317!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0407750187718821!GO:0030271;chymase activity;0.0417952280851771!GO:0043681;protein import into mitochondrion;0.0423000735469782!GO:0004177;aminopeptidase activity;0.0433466953483148!GO:0016601;Rac protein signal transduction;0.0444216634699226!GO:0015266;protein channel activity;0.0444272113603696!GO:0046934;phosphatidylinositol-4,5-bisphosphate 3-kinase activity;0.0445169841775469!GO:0000119;mediator complex;0.0446592524990718!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0447416689208713!GO:0051920;peroxiredoxin activity;0.044871813401191!GO:0004402;histone acetyltransferase activity;0.0455276123260763!GO:0004468;lysine N-acetyltransferase activity;0.0455276123260763!GO:0032318;regulation of Ras GTPase activity;0.046118210216084!GO:0015923;mannosidase activity;0.046118210216084!GO:0051219;phosphoprotein binding;0.0466340742887129!GO:0045603;positive regulation of endothelial cell differentiation;0.0466340742887129!GO:0030911;TPR domain binding;0.0472492997202291!GO:0005788;endoplasmic reticulum lumen;0.048294774185048!GO:0005955;calcineurin complex;0.0487497625635019!GO:0032507;maintenance of cellular protein localization;0.0487497625635019!GO:0006013;mannose metabolic process;0.0488182923695237!GO:0030019;tryptase activity;0.0489308875125658!GO:0051223;regulation of protein transport;0.0493311548455764!GO:0045815;positive regulation of gene expression, epigenetic;0.0496166749672875
|sample_id=11565
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11565-120D8;search_select_hide=table117:FF:11565-120D8
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Mast cell, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12594
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage50 years old adult
sexfemale
age76
cell typemast cell
cell lineNA
companyNA
collaborationSven Guhl (Charite Germany)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberBsMC-S
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004690
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12594 CAGE DRX008332 DRR009204
Accession ID Hg19

Library idBAMCTSS
CNhs12594 DRZ000629 DRZ002014
Accession ID Hg38

Library idBAMCTSS
CNhs12594 DRZ011979 DRZ013364
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004690
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GCCAAT sRNA-Seq DRX037131 DRR041497
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GCCAAT DRZ007139


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0.425
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0404
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0818
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0.846
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.246
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0818
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.457
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.0818
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.948
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0.109
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.424
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.444
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0407
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.00814
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0965
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.351
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0818
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.262
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.351
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.656
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.533
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD41.17
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.151
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.568
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.996
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.325
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0382
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD41.018
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.533
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.56
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0818
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0444
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.37
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.167
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.369
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0.309
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.351
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0818
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12594

Jaspar motifP-value
MA0002.20.00108
MA0003.10.279
MA0004.10.79
MA0006.10.565
MA0007.10.497
MA0009.10.0574
MA0014.10.861
MA0017.10.0345
MA0018.25.92501e-11
MA0019.10.152
MA0024.10.176
MA0025.10.0019
MA0027.10.575
MA0028.10.597
MA0029.10.00147
MA0030.11.28185e-4
MA0031.10.0906
MA0035.26.49565e-9
MA0038.10.0318
MA0039.20.0317
MA0040.10.749
MA0041.10.166
MA0042.10.178
MA0043.11.08164e-6
MA0046.10.633
MA0047.20.53
MA0048.10.722
MA0050.10.776
MA0051.10.532
MA0052.11.29862e-4
MA0055.10.524
MA0057.10.308
MA0058.10.318
MA0059.10.183
MA0060.10.881
MA0061.13.16467e-20
MA0062.22.72384e-6
MA0065.20.053
MA0066.10.566
MA0067.11.99628e-9
MA0068.10.00247
MA0069.10.921
MA0070.10.119
MA0071.10.7
MA0072.10.425
MA0073.10.133
MA0074.10.5
MA0076.10.342
MA0077.10.302
MA0078.10.761
MA0079.20.00803
MA0080.23.79692e-12
MA0081.13.89135e-4
MA0083.10.234
MA0084.10.513
MA0087.10.921
MA0088.10.00155
MA0090.10.00136
MA0091.10.465
MA0092.10.537
MA0093.10.783
MA0099.21.1048e-17
MA0100.10.69
MA0101.17.95119e-18
MA0102.20.375
MA0103.10.00195
MA0104.20.469
MA0105.11.40561e-7
MA0106.10.022
MA0107.15.37822e-20
MA0108.25.45448e-6
MA0111.10.32
MA0112.20.745
MA0113.10.723
MA0114.10.0265
MA0115.10.529
MA0116.10.0529
MA0117.10.00127
MA0119.10.106
MA0122.10.581
MA0124.10.776
MA0125.10.266
MA0131.10.239
MA0135.10.102
MA0136.17.22046e-12
MA0137.20.696
MA0138.20.616
MA0139.10.405
MA0140.14.49023e-7
MA0141.10.147
MA0142.10.178
MA0143.10.494
MA0144.10.711
MA0145.10.425
MA0146.10.108
MA0147.10.134
MA0148.10.396
MA0149.10.706
MA0150.12.3895e-4
MA0152.10.116
MA0153.10.158
MA0154.10.437
MA0155.10.537
MA0156.19.32669e-6
MA0157.10.973
MA0159.10.494
MA0160.10.223
MA0162.10.0117
MA0163.10.141
MA0164.10.61
MA0258.10.944
MA0259.10.511



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12594

Novel motifP-value
10.191
100.395
1000.203
1010.421
1020.807
1030.405
1040.859
1050.228
1060.318
1070.0331
1080.156
1090.868
110.42
1100.269
1110.191
1120.731
1130.505
1140.127
1150.717
1160.0922
1170.0898
1180.322
1190.164
120.604
1200.0462
1210.153
1220.243
1230.256
1240.0247
1250.249
1260.295
1270.771
1280.774
1290.0125
130.462
1300.51
1310.943
1320.0623
1330.0883
1340.438
1350.792
1360.175
1370.0446
1380.256
1390.838
140.66
1400.241
1410.225
1420.139
1430.86
1440.997
1450.411
1460.318
1470.134
1480.737
1490.0858
150.637
1500.706
1510.495
1520.0305
1530.551
1540.849
1550.209
1560.826
1570.934
1580.185
1590.828
160.211
1600.0642
1610.448
1620.0663
1630.115
1640.432
1650.767
1660.021
1670.411
1680.312
1690.851
170.647
180.32
190.298
20.118
200.377
210.741
220.604
230.78
240.928
250.885
260.519
270.264
280.613
290.412
30.249
300.473
310.462
320.00582
330.825
340.835
350.175
360.893
370.47
380.77
390.717
40.641
400.647
410.372
420.248
430.467
440.111
450.757
460.418
470.319
480.208
490.498
50.779
500.921
510.968
520.905
530.961
540.951
550.65
560.53
570.0981
580.657
590.818
60.647
600.867
610.638
620.934
630.301
640.47
650.629
660.789
670.619
680.756
690.202
70.814
700.308
710.516
720.287
730.111
740.0125
750.738
760.878
770.0681
780.914
790.4
80.103
800.393
810.293
820.812
830.939
840.269
850.841
860.0741
870.471
880.53
890.0593
90.649
900.321
911
920.521
930.583
940.957
950.0966
960.455
970.79
980.496
994.37843e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12594


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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