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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005092
|accession_numbers=CAGE;DRX008164;DRR009036;DRZ000461;DRZ001846
|accession_numbers=CAGE;DRX008164;DRR009036;DRZ000461;DRZ001846;DRZ011811;DRZ013196
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|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg38.nobarcode.bam
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|id=FF:11912-125G4
|id=FF:11912-125G4
|is_a=EFO:0002091;;FF:0011112
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|library_id=CNhs13549
|library_id=CNhs13549
|library_id_phase_based=2:CNhs13549
|library_id_phase_based=2:CNhs13549
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11912
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11912
|name=CD14+CD16+ Monocytes, donor3
|name=CD14+CD16+ Monocytes, donor3
|namespace=
|namespace=
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|profile_rnaseq=
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Line 91: Line 101:
|top_motifs=NFIL3:3.12719730705;SPIB:2.62339723665;SPI1:2.42393128399;IRF1,2:2.30008967059;NANOG{mouse}:2.2143711157;PAX2:2.03922649238;ETS1,2:1.99605557026;IRF7:1.88598859999;NFKB1_REL_RELA:1.864289723;RFX2..5_RFXANK_RFXAP:1.85243315379;ATF5_CREB3:1.80655080667;DMAP1_NCOR{1,2}_SMARC:1.77185220487;TGIF1:1.72634997667;RUNX1..3:1.65358048226;ELF1,2,4:1.64488740068;SREBF1,2:1.60261790433;MAFB:1.54406091413;ESRRA:1.40241771195;CEBPA,B_DDIT3:1.39389663534;EP300:1.39321617992;HMX1:1.36548142742;HES1:1.35279841883;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34845443429;FOXP3:1.27398129818;CREB1:1.27273002165;ATF4:1.17468177826;HLF:1.17451287792;FOXO1,3,4:1.16475765657;FOXN1:1.13840996098;HIF1A:1.04056274746;FOX{D1,D2}:0.960723345974;FOSL2:0.840770908759;FOX{F1,F2,J1}:0.75849496215;GLI1..3:0.74956393873;BACH2:0.745975408831;RXRA_VDR{dimer}:0.709796381803;ATF2:0.705859891707;JUN:0.694399172289;FOS_FOS{B,L1}_JUN{B,D}:0.664578365784;PAX8:0.663781497612;TLX2:0.628468981726;HMGA1,2:0.583444855505;FOXA2:0.582411206935;FOX{I1,J2}:0.528575153012;NFE2:0.519391844978;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.473356668165;ATF6:0.445122973511;NFE2L2:0.406222028739;NANOG:0.400206651824;MEF2{A,B,C,D}:0.369704456643;STAT2,4,6:0.35279784321;ALX4:0.352108602225;HBP1_HMGB_SSRP1_UBTF:0.325927821668;BPTF:0.316038349058;TAL1_TCF{3,4,12}:0.20200079401;CDX1,2,4:0.197860558269;PAX3,7:0.163581224783;RORA:0.112142804142;ESR1:0.0971379899514;HSF1,2:0.0880409123608;OCT4_SOX2{dimer}:0.0663339972967;NR6A1:0.047208439618;FOXQ1:0.0437919373002;NR5A1,2:0.0155884362814;PAX4:0.014017549308;AHR_ARNT_ARNT2:0.0122982900604;RFX1:0.00329973002748;T:-0.0847089878759;ELK1,4_GABP{A,B1}:-0.0880097836342;HNF4A_NR2F1,2:-0.113074018782;STAT1,3:-0.164999981993;NFE2L1:-0.177340460837;POU5F1:-0.200123904246;ZNF148:-0.200798405005;GATA4:-0.208995504357;TFCP2:-0.214388665071;HOX{A5,B5}:-0.216226628529;SRF:-0.258950994079;GATA6:-0.260536113528;SOX2:-0.30700254524;EBF1:-0.309754835563;STAT5{A,B}:-0.31750808844;XBP1:-0.322327063422;EN1,2:-0.331379035701;HOXA9_MEIS1:-0.337045041816;TFAP4:-0.350987070603;FOXP1:-0.352488768956;PPARG:-0.371449718492;POU2F1..3:-0.389044062112;NR1H4:-0.399782941483;PRRX1,2:-0.411638136297;RBPJ:-0.422019833209;MYB:-0.455903211437;CRX:-0.502893463252;NKX2-2,8:-0.534401650404;ALX1:-0.54398566331;NHLH1,2:-0.552942235702;RXR{A,B,G}:-0.559316157217;BREu{core}:-0.572030191882;MYOD1:-0.581625718088;DBP:-0.585706742329;NFIX:-0.624139994561;NFATC1..3:-0.629642292948;PBX1:-0.661922202105;CUX2:-0.673370674863;PDX1:-0.684508898141;IKZF1:-0.68656892062;PAX1,9:-0.693126795318;FOXD3:-0.702220786996;VSX1,2:-0.711920930863;SPZ1:-0.715644695549;IKZF2:-0.727457862017;MYFfamily:-0.728321667308;PITX1..3:-0.73944809975;HNF1A:-0.743677671215;AIRE:-0.761908559406;ZBTB16:-0.770283785506;PRDM1:-0.78106950382;REST:-0.786269711446;FOXL1:-0.787550308219;TOPORS:-0.796382974299;PAX5:-0.824375004728;ZEB1:-0.845877837534;ARID5B:-0.891015953819;MTF1:-0.909890926529;NKX6-1,2:-0.920311617105;ZNF238:-0.924251281783;NKX2-3_NKX2-5:-0.941889025791;SOX{8,9,10}:-0.951044034059;NFY{A,B,C}:-0.966949320049;TFAP2{A,C}:-0.996577574558;LEF1_TCF7_TCF7L1,2:-1.01270856947;TBP:-1.02961349582;E2F1..5:-1.03053170853;SOX5:-1.0315074991;POU1F1:-1.06412109769;AR:-1.06523457632;HOX{A6,A7,B6,B7}:-1.07278861374;PAX6:-1.07750096551;NKX3-2:-1.08399877863;GZF1:-1.08719344602;KLF4:-1.10717741365;SP1:-1.12077979062;GCM1,2:-1.15717240185;ZFP161:-1.16947804985;PATZ1:-1.19883537362;SMAD1..7,9:-1.20041974554;ZIC1..3:-1.21475232566;ADNP_IRX_SIX_ZHX:-1.23793768896;TP53:-1.24061572231;MTE{core}:-1.2591668987;YY1:-1.26429093619;LHX3,4:-1.28619783869;MZF1:-1.31495973858;EGR1..3:-1.32319342543;TFAP2B:-1.33563393327;SNAI1..3:-1.33873764713;GFI1:-1.36425710432;NRF1:-1.37141532096;HIC1:-1.37575056907;bHLH_family:-1.37694919971;TBX4,5:-1.38919968784;MYBL2:-1.39358623377;ZNF423:-1.40515677622;GFI1B:-1.43348836074;TLX1..3_NFIC{dimer}:-1.43694978603;MED-1{core}:-1.45170188639;NR3C1:-1.45976050127;RREB1:-1.51315196196;MAZ:-1.54816096544;TEF:-1.56537851661;GTF2I:-1.56574573634;ONECUT1,2:-1.57742582593;ZBTB6:-1.58834804854;TEAD1:-1.59633053297;NKX2-1,4:-1.63533059564;LMO2:-1.64593563814;NKX3-1:-1.65888537943;TFDP1:-1.68795813706;HOX{A4,D4}:-1.71099827032;ZNF143:-1.76700959982;XCPE1{core}:-1.80926342534;CDC5L:-1.82387162404;GTF2A1,2:-1.82507213599;UFEwm:-1.87014511524;ZNF384:-1.87747876295;POU6F1:-1.9099115455;HAND1,2:-2.0683284161;FOXM1:-2.10297685746;SOX17:-2.11203026466;EVI1:-2.23727952834;POU3F1..4:-2.70593199742
|top_motifs=NFIL3:3.12719730705;SPIB:2.62339723665;SPI1:2.42393128399;IRF1,2:2.30008967059;NANOG{mouse}:2.2143711157;PAX2:2.03922649238;ETS1,2:1.99605557026;IRF7:1.88598859999;NFKB1_REL_RELA:1.864289723;RFX2..5_RFXANK_RFXAP:1.85243315379;ATF5_CREB3:1.80655080667;DMAP1_NCOR{1,2}_SMARC:1.77185220487;TGIF1:1.72634997667;RUNX1..3:1.65358048226;ELF1,2,4:1.64488740068;SREBF1,2:1.60261790433;MAFB:1.54406091413;ESRRA:1.40241771195;CEBPA,B_DDIT3:1.39389663534;EP300:1.39321617992;HMX1:1.36548142742;HES1:1.35279841883;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34845443429;FOXP3:1.27398129818;CREB1:1.27273002165;ATF4:1.17468177826;HLF:1.17451287792;FOXO1,3,4:1.16475765657;FOXN1:1.13840996098;HIF1A:1.04056274746;FOX{D1,D2}:0.960723345974;FOSL2:0.840770908759;FOX{F1,F2,J1}:0.75849496215;GLI1..3:0.74956393873;BACH2:0.745975408831;RXRA_VDR{dimer}:0.709796381803;ATF2:0.705859891707;JUN:0.694399172289;FOS_FOS{B,L1}_JUN{B,D}:0.664578365784;PAX8:0.663781497612;TLX2:0.628468981726;HMGA1,2:0.583444855505;FOXA2:0.582411206935;FOX{I1,J2}:0.528575153012;NFE2:0.519391844978;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.473356668165;ATF6:0.445122973511;NFE2L2:0.406222028739;NANOG:0.400206651824;MEF2{A,B,C,D}:0.369704456643;STAT2,4,6:0.35279784321;ALX4:0.352108602225;HBP1_HMGB_SSRP1_UBTF:0.325927821668;BPTF:0.316038349058;TAL1_TCF{3,4,12}:0.20200079401;CDX1,2,4:0.197860558269;PAX3,7:0.163581224783;RORA:0.112142804142;ESR1:0.0971379899514;HSF1,2:0.0880409123608;OCT4_SOX2{dimer}:0.0663339972967;NR6A1:0.047208439618;FOXQ1:0.0437919373002;NR5A1,2:0.0155884362814;PAX4:0.014017549308;AHR_ARNT_ARNT2:0.0122982900604;RFX1:0.00329973002748;T:-0.0847089878759;ELK1,4_GABP{A,B1}:-0.0880097836342;HNF4A_NR2F1,2:-0.113074018782;STAT1,3:-0.164999981993;NFE2L1:-0.177340460837;POU5F1:-0.200123904246;ZNF148:-0.200798405005;GATA4:-0.208995504357;TFCP2:-0.214388665071;HOX{A5,B5}:-0.216226628529;SRF:-0.258950994079;GATA6:-0.260536113528;SOX2:-0.30700254524;EBF1:-0.309754835563;STAT5{A,B}:-0.31750808844;XBP1:-0.322327063422;EN1,2:-0.331379035701;HOXA9_MEIS1:-0.337045041816;TFAP4:-0.350987070603;FOXP1:-0.352488768956;PPARG:-0.371449718492;POU2F1..3:-0.389044062112;NR1H4:-0.399782941483;PRRX1,2:-0.411638136297;RBPJ:-0.422019833209;MYB:-0.455903211437;CRX:-0.502893463252;NKX2-2,8:-0.534401650404;ALX1:-0.54398566331;NHLH1,2:-0.552942235702;RXR{A,B,G}:-0.559316157217;BREu{core}:-0.572030191882;MYOD1:-0.581625718088;DBP:-0.585706742329;NFIX:-0.624139994561;NFATC1..3:-0.629642292948;PBX1:-0.661922202105;CUX2:-0.673370674863;PDX1:-0.684508898141;IKZF1:-0.68656892062;PAX1,9:-0.693126795318;FOXD3:-0.702220786996;VSX1,2:-0.711920930863;SPZ1:-0.715644695549;IKZF2:-0.727457862017;MYFfamily:-0.728321667308;PITX1..3:-0.73944809975;HNF1A:-0.743677671215;AIRE:-0.761908559406;ZBTB16:-0.770283785506;PRDM1:-0.78106950382;REST:-0.786269711446;FOXL1:-0.787550308219;TOPORS:-0.796382974299;PAX5:-0.824375004728;ZEB1:-0.845877837534;ARID5B:-0.891015953819;MTF1:-0.909890926529;NKX6-1,2:-0.920311617105;ZNF238:-0.924251281783;NKX2-3_NKX2-5:-0.941889025791;SOX{8,9,10}:-0.951044034059;NFY{A,B,C}:-0.966949320049;TFAP2{A,C}:-0.996577574558;LEF1_TCF7_TCF7L1,2:-1.01270856947;TBP:-1.02961349582;E2F1..5:-1.03053170853;SOX5:-1.0315074991;POU1F1:-1.06412109769;AR:-1.06523457632;HOX{A6,A7,B6,B7}:-1.07278861374;PAX6:-1.07750096551;NKX3-2:-1.08399877863;GZF1:-1.08719344602;KLF4:-1.10717741365;SP1:-1.12077979062;GCM1,2:-1.15717240185;ZFP161:-1.16947804985;PATZ1:-1.19883537362;SMAD1..7,9:-1.20041974554;ZIC1..3:-1.21475232566;ADNP_IRX_SIX_ZHX:-1.23793768896;TP53:-1.24061572231;MTE{core}:-1.2591668987;YY1:-1.26429093619;LHX3,4:-1.28619783869;MZF1:-1.31495973858;EGR1..3:-1.32319342543;TFAP2B:-1.33563393327;SNAI1..3:-1.33873764713;GFI1:-1.36425710432;NRF1:-1.37141532096;HIC1:-1.37575056907;bHLH_family:-1.37694919971;TBX4,5:-1.38919968784;MYBL2:-1.39358623377;ZNF423:-1.40515677622;GFI1B:-1.43348836074;TLX1..3_NFIC{dimer}:-1.43694978603;MED-1{core}:-1.45170188639;NR3C1:-1.45976050127;RREB1:-1.51315196196;MAZ:-1.54816096544;TEF:-1.56537851661;GTF2I:-1.56574573634;ONECUT1,2:-1.57742582593;ZBTB6:-1.58834804854;TEAD1:-1.59633053297;NKX2-1,4:-1.63533059564;LMO2:-1.64593563814;NKX3-1:-1.65888537943;TFDP1:-1.68795813706;HOX{A4,D4}:-1.71099827032;ZNF143:-1.76700959982;XCPE1{core}:-1.80926342534;CDC5L:-1.82387162404;GTF2A1,2:-1.82507213599;UFEwm:-1.87014511524;ZNF384:-1.87747876295;POU6F1:-1.9099115455;HAND1,2:-2.0683284161;FOXM1:-2.10297685746;SOX17:-2.11203026466;EVI1:-2.23727952834;POU3F1..4:-2.70593199742
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11912-125G4;search_select_hide=table117:FF:11912-125G4
}}
}}

Latest revision as of 18:29, 4 June 2020

Name:CD14+CD16+ Monocytes, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13549
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typemonocyte
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number45-46
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005092
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13549 CAGE DRX008164 DRR009036
Accession ID Hg19

Library idBAMCTSS
CNhs13549 DRZ000461 DRZ001846
Accession ID Hg38

Library idBAMCTSS
CNhs13549 DRZ011811 DRZ013196
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.0827
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0827
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0827
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.152
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0827
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.454
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.152
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.311
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.114
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.439
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.204
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.253
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.837
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.152
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.264
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.311
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0827
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0948
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.533
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.879
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.659
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.425
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.639
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.571
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.212
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.705
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.152
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.491
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.486
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.795
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.076
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0827
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.354
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.987
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.533
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.471
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.152
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0827
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.264
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.428
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.741
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13549

Jaspar motifP-value
MA0002.21.97897e-9
MA0003.10.0746
MA0004.10.276
MA0006.10.798
MA0007.10.937
MA0009.10.446
MA0014.10.442
MA0017.10.00843
MA0018.20.022
MA0019.10.733
MA0024.10.00635
MA0025.16.12069e-5
MA0027.10.729
MA0028.10.428
MA0029.10.176
MA0030.10.243
MA0031.10.539
MA0035.20.505
MA0038.10.394
MA0039.20.432
MA0040.10.269
MA0041.10.924
MA0042.10.139
MA0043.19.58836e-7
MA0046.10.0416
MA0047.20.133
MA0048.10.839
MA0050.11.83373e-12
MA0051.13.27243e-6
MA0052.10.0235
MA0055.10.77
MA0057.10.681
MA0058.10.127
MA0059.10.247
MA0060.17.50323e-6
MA0061.13.64207e-8
MA0062.24.61845e-5
MA0065.20.00668
MA0066.10.0458
MA0067.12.70449e-5
MA0068.10.773
MA0069.10.738
MA0070.10.00379
MA0071.10.123
MA0072.10.526
MA0073.10.37
MA0074.10.318
MA0076.10.356
MA0077.10.0938
MA0078.10.986
MA0079.20.499
MA0080.21.28657e-15
MA0081.16.19081e-5
MA0083.10.845
MA0084.10.372
MA0087.10.357
MA0088.10.653
MA0090.10.0428
MA0091.10.698
MA0092.10.574
MA0093.10.309
MA0099.25.7304e-11
MA0100.10.9
MA0101.16.47375e-9
MA0102.23.8747e-9
MA0103.10.123
MA0104.20.196
MA0105.13.25902e-9
MA0106.10.71
MA0107.11.34901e-10
MA0108.27.9364e-5
MA0111.10.452
MA0112.22.43821e-4
MA0113.10.846
MA0114.10.0614
MA0115.10.867
MA0116.11.58021e-4
MA0117.10.173
MA0119.10.458
MA0122.10.823
MA0124.10.266
MA0125.10.235
MA0131.10.987
MA0135.10.446
MA0136.16.89987e-19
MA0137.20.404
MA0138.20.839
MA0139.10.911
MA0140.10.57
MA0141.10.0187
MA0142.10.442
MA0143.10.841
MA0144.10.272
MA0145.10.204
MA0146.10.0736
MA0147.10.276
MA0148.10.393
MA0149.10.106
MA0150.18.53738e-6
MA0152.10.189
MA0153.10.00876
MA0154.10.00166
MA0155.10.762
MA0156.13.71559e-13
MA0157.10.286
MA0159.10.0352
MA0160.10.00728
MA0162.10.505
MA0163.14.07237e-10
MA0164.10.929
MA0258.10.00968
MA0259.10.833



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13549

Novel motifP-value
10.133
100.03
1000.887
1010.609
1020.649
1030.298
1040.535
1050.147
1060.00917
1070.665
1080.672
1090.049
110.214
1100.195
1110.0506
1120.28
1130.438
1140.0154
1150.119
1160.985
1170.0292
1180.107
1190.421
120.292
1200.777
1210.716
1220.581
1230.0303
1240.622
1250.216
1260.122
1270.374
1280.0757
1290.997
130.0616
1300.288
1310.826
1320.0262
1330.491
1340.73
1350.089
1360.739
1371.15479e-4
1380.272
1390.0652
140.393
1400.228
1410.506
1420.465
1430.0733
1440.846
1450.572
1460.996
1470.596
1480.0141
1490.812
150.13
1500.603
1510.354
1520.288
1530.855
1540.806
1550.251
1560.877
1570.889
1580.12
1590.209
160.465
1600.422
1610.438
1620.343
1630.802
1640.1
1650.0729
1660.677
1670.185
1680.266
1690.012
170.263
180.175
190.349
20.867
200.437
210.662
220.218
230.222
240.245
250.171
260.0472
270.686
280.503
290.0897
30.104
300.434
310.679
320.575
330.161
340.572
350.182
360.0289
370.0618
380.469
390.809
40.729
400.0592
410.0195
420.312
430.0744
440.899
450.911
460.172
470.522
480.496
490.142
50.103
500.978
510.381
520.386
530.315
540.509
550.65
560.873
570.864
580.0754
590.188
60.703
600.0464
610.272
620.0342
630.534
640.353
650.32
660.215
670.318
680.68
690.918
70.134
700.0258
710.0258
720.2
730.121
740.0975
750.0692
760.213
770.607
780.161
790.423
80.429
800.167
810.233
820.24
830.15
840.68
850.0394
860.126
870.204
880.576
890.476
90.281
900.132
910.396
920.465
930.291
940.0225
950.0615
960.446
970.838
980.0915
990.0239



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13549


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011112 (CD14-positiveCD16-positive Monocytes)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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