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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005966
|DRA_sample_Accession=CAGE@SAMD00005966
|accession_numbers=CAGE;DRX008203;DRR009075;DRZ000500;DRZ001885
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005966
|accession_numbers=CAGE;DRX008203;DRR009075;DRZ000500;DRZ001885;DRZ011850;DRZ013235
|accession_numbers_RNASeq=sRNA-Seq;DRX037197;DRR041563;DRZ007205
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520de%2520diff%252c%2520donor3.CNhs12020.11410-118E6.hg38.nobarcode.ctss.bed.gz
|id=FF:11410-118E6
|id=FF:11410-118E6
|is_a=EFO:0002091;;FF:0000246
|is_a=EFO:0002091;;FF:0000246
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|library_id=CNhs12020
|library_id=CNhs12020
|library_id_phase_based=2:CNhs12020
|library_id_phase_based=2:CNhs12020
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11410
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTGAAA.11410
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11410
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTGAAA.11410
|name=Chondrocyte - de diff, donor3
|name=Chondrocyte - de diff, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=FOXL1:2.75262907716;ALX4:2.23686427758;EVI1:1.94309507435;UFEwm:1.9101897632;ESR1:1.78202739107;RXR{A,B,G}:1.74447030985;HES1:1.7094161879;NKX3-1:1.41499340748;NR6A1:1.31435174266;ZNF238:1.30859213839;MAFB:1.29418188935;TFCP2:1.27273165584;ATF6:1.25063574598;SMAD1..7,9:1.20091878196;MYBL2:1.19663159459;HIF1A:1.17189887281;GLI1..3:1.13382935789;ZNF423:1.12603467462;HOX{A4,D4}:1.10694401276;HMGA1,2:1.0856574349;PPARG:1.05282662764;GCM1,2:1.04619617622;TEF:1.01952508311;MTF1:0.989575362929;NFE2L1:0.970464813604;TEAD1:0.967049799547;PRDM1:0.928486005779;TFAP4:0.903187306214;GFI1B:0.887821949864;AIRE:0.886372737095;HSF1,2:0.882476195084;GTF2A1,2:0.877677600114;PAX1,9:0.86974231968;TAL1_TCF{3,4,12}:0.855244209243;ZIC1..3:0.846173259281;MTE{core}:0.82799836302;KLF4:0.817783421373;NR1H4:0.804135524747;NKX2-2,8:0.79237891237;ZNF384:0.748046175389;NKX2-1,4:0.73139465193;TBP:0.727672921311;SPZ1:0.726972262325;HMX1:0.724133254482;GZF1:0.707539810831;HOX{A6,A7,B6,B7}:0.68095073575;XBP1:0.680906059333;IKZF1:0.676669061033;HIC1:0.657089846501;NR3C1:0.619293646671;TFAP2{A,C}:0.617618252456;GTF2I:0.60157614134;EBF1:0.599033589275;RREB1:0.59308319289;TFAP2B:0.590427732477;EN1,2:0.585531133382;TLX1..3_NFIC{dimer}:0.56539101956;BPTF:0.549646261968;NFATC1..3:0.515288640362;RXRA_VDR{dimer}:0.50924561629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499508715599;MAZ:0.466970474088;ZBTB6:0.458537349587;XCPE1{core}:0.449235212832;PATZ1:0.419664543591;FOXD3:0.415069758376;STAT2,4,6:0.40721794778;NANOG{mouse}:0.405672438887;GATA4:0.404093769062;POU6F1:0.402572426788;HOX{A5,B5}:0.381231690666;PAX5:0.376883415646;HAND1,2:0.36120003597;TOPORS:0.36011116325;POU1F1:0.351372127357;YY1:0.295824510984;CDC5L:0.271233809433;POU5F1:0.246622740227;SOX5:0.246544444109;ESRRA:0.23259107218;ZNF148:0.231968642134;EP300:0.198491059117;HLF:0.19550561273;LHX3,4:0.189531835568;SRF:0.160683877897;MYFfamily:0.128798524631;MZF1:0.100788226528;TP53:0.0560785251799;REST:0.0531742498315;IRF1,2:0.0364280958858;NHLH1,2:0.033720471109;MYB:0.0285504857857;PAX4:0.0256853963587;NKX6-1,2:0.0104679975274;NFE2L2:0.00782671362951;AHR_ARNT_ARNT2:0.004384998201;ARID5B:0.00205704154509;VSX1,2:-0.0113009739217;STAT5{A,B}:-0.0310482006653;FOXO1,3,4:-0.0500661876804;SP1:-0.0630993360799;EGR1..3:-0.0739318171782;AR:-0.0785091015438;FOXP3:-0.101529315164;HNF1A:-0.109344440922;MED-1{core}:-0.118369160265;MEF2{A,B,C,D}:-0.128023570568;TBX4,5:-0.166522259144;RFX1:-0.179190763384;NR5A1,2:-0.180496727715;CEBPA,B_DDIT3:-0.18438631368;DMAP1_NCOR{1,2}_SMARC:-0.184949589285;BACH2:-0.197431797412;NKX3-2:-0.204170958538;FOX{I1,J2}:-0.207953319209;PAX6:-0.210546047841;CREB1:-0.222830810199;LMO2:-0.244575563174;PRRX1,2:-0.245031230423;FOS_FOS{B,L1}_JUN{B,D}:-0.252279888867;HBP1_HMGB_SSRP1_UBTF:-0.254602000638;STAT1,3:-0.284677480457;CDX1,2,4:-0.286070286295;TFDP1:-0.290640303961;FOXM1:-0.316173035938;ZBTB16:-0.328264994395;ONECUT1,2:-0.349162323453;FOXP1:-0.364716231883;FOX{D1,D2}:-0.37992685958;bHLH_family:-0.38540693172;NKX2-3_NKX2-5:-0.401333510163;HNF4A_NR2F1,2:-0.409338330805;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420778177812;ZFP161:-0.422561676127;ELK1,4_GABP{A,B1}:-0.440212118888;ZNF143:-0.459485022243;NRF1:-0.461839382698;NFKB1_REL_RELA:-0.466851617843;NFE2:-0.466876492192;NFIX:-0.470381939427;PDX1:-0.479425966067;IKZF2:-0.489446310891;RUNX1..3:-0.49234401963;ATF4:-0.503931663951;NFIL3:-0.504812973296;ATF5_CREB3:-0.516382441011;FOSL2:-0.520364749738;SREBF1,2:-0.52250338841;BREu{core}:-0.542617147746;FOXA2:-0.562437525715;DBP:-0.581184723528;ATF2:-0.58547850306;SNAI1..3:-0.585815304582;LEF1_TCF7_TCF7L1,2:-0.591155892713;ADNP_IRX_SIX_ZHX:-0.596567840901;GFI1:-0.655335342819;E2F1..5:-0.665022864612;RFX2..5_RFXANK_RFXAP:-0.675481375069;FOX{F1,F2,J1}:-0.693026004556;HOXA9_MEIS1:-0.695848062462;SOX17:-0.704468632555;PAX3,7:-0.725917412617;JUN:-0.753666257778;IRF7:-0.769296119879;RBPJ:-0.7878629905;ETS1,2:-0.804418690395;SPI1:-0.839351889042;SPIB:-0.867882686479;PITX1..3:-0.886120356443;FOXN1:-0.904417707126;PAX8:-0.918909131802;ZEB1:-0.950734512729;ELF1,2,4:-0.968940987021;SOX2:-0.976725568823;T:-0.999572189398;POU3F1..4:-1.01737478427;FOXQ1:-1.10531938743;TLX2:-1.13253638956;CRX:-1.14716054917;PBX1:-1.20234675415;NFY{A,B,C}:-1.2116720638;PAX2:-1.22336618771;TGIF1:-1.22596969745;CUX2:-1.24843525417;GATA6:-1.46959036159;POU2F1..3:-1.47482966665;OCT4_SOX2{dimer}:-1.47683979413;ALX1:-1.52669045229;RORA:-1.53064129762;MYOD1:-1.5456326901;SOX{8,9,10}:-1.66229448934;NANOG:-1.72086660471
|top_motifs=FOXL1:2.75262907716;ALX4:2.23686427758;EVI1:1.94309507435;UFEwm:1.9101897632;ESR1:1.78202739107;RXR{A,B,G}:1.74447030985;HES1:1.7094161879;NKX3-1:1.41499340748;NR6A1:1.31435174266;ZNF238:1.30859213839;MAFB:1.29418188935;TFCP2:1.27273165584;ATF6:1.25063574598;SMAD1..7,9:1.20091878196;MYBL2:1.19663159459;HIF1A:1.17189887281;GLI1..3:1.13382935789;ZNF423:1.12603467462;HOX{A4,D4}:1.10694401276;HMGA1,2:1.0856574349;PPARG:1.05282662764;GCM1,2:1.04619617622;TEF:1.01952508311;MTF1:0.989575362929;NFE2L1:0.970464813604;TEAD1:0.967049799547;PRDM1:0.928486005779;TFAP4:0.903187306214;GFI1B:0.887821949864;AIRE:0.886372737095;HSF1,2:0.882476195084;GTF2A1,2:0.877677600114;PAX1,9:0.86974231968;TAL1_TCF{3,4,12}:0.855244209243;ZIC1..3:0.846173259281;MTE{core}:0.82799836302;KLF4:0.817783421373;NR1H4:0.804135524747;NKX2-2,8:0.79237891237;ZNF384:0.748046175389;NKX2-1,4:0.73139465193;TBP:0.727672921311;SPZ1:0.726972262325;HMX1:0.724133254482;GZF1:0.707539810831;HOX{A6,A7,B6,B7}:0.68095073575;XBP1:0.680906059333;IKZF1:0.676669061033;HIC1:0.657089846501;NR3C1:0.619293646671;TFAP2{A,C}:0.617618252456;GTF2I:0.60157614134;EBF1:0.599033589275;RREB1:0.59308319289;TFAP2B:0.590427732477;EN1,2:0.585531133382;TLX1..3_NFIC{dimer}:0.56539101956;BPTF:0.549646261968;NFATC1..3:0.515288640362;RXRA_VDR{dimer}:0.50924561629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499508715599;MAZ:0.466970474088;ZBTB6:0.458537349587;XCPE1{core}:0.449235212832;PATZ1:0.419664543591;FOXD3:0.415069758376;STAT2,4,6:0.40721794778;NANOG{mouse}:0.405672438887;GATA4:0.404093769062;POU6F1:0.402572426788;HOX{A5,B5}:0.381231690666;PAX5:0.376883415646;HAND1,2:0.36120003597;TOPORS:0.36011116325;POU1F1:0.351372127357;YY1:0.295824510984;CDC5L:0.271233809433;POU5F1:0.246622740227;SOX5:0.246544444109;ESRRA:0.23259107218;ZNF148:0.231968642134;EP300:0.198491059117;HLF:0.19550561273;LHX3,4:0.189531835568;SRF:0.160683877897;MYFfamily:0.128798524631;MZF1:0.100788226528;TP53:0.0560785251799;REST:0.0531742498315;IRF1,2:0.0364280958858;NHLH1,2:0.033720471109;MYB:0.0285504857857;PAX4:0.0256853963587;NKX6-1,2:0.0104679975274;NFE2L2:0.00782671362951;AHR_ARNT_ARNT2:0.004384998201;ARID5B:0.00205704154509;VSX1,2:-0.0113009739217;STAT5{A,B}:-0.0310482006653;FOXO1,3,4:-0.0500661876804;SP1:-0.0630993360799;EGR1..3:-0.0739318171782;AR:-0.0785091015438;FOXP3:-0.101529315164;HNF1A:-0.109344440922;MED-1{core}:-0.118369160265;MEF2{A,B,C,D}:-0.128023570568;TBX4,5:-0.166522259144;RFX1:-0.179190763384;NR5A1,2:-0.180496727715;CEBPA,B_DDIT3:-0.18438631368;DMAP1_NCOR{1,2}_SMARC:-0.184949589285;BACH2:-0.197431797412;NKX3-2:-0.204170958538;FOX{I1,J2}:-0.207953319209;PAX6:-0.210546047841;CREB1:-0.222830810199;LMO2:-0.244575563174;PRRX1,2:-0.245031230423;FOS_FOS{B,L1}_JUN{B,D}:-0.252279888867;HBP1_HMGB_SSRP1_UBTF:-0.254602000638;STAT1,3:-0.284677480457;CDX1,2,4:-0.286070286295;TFDP1:-0.290640303961;FOXM1:-0.316173035938;ZBTB16:-0.328264994395;ONECUT1,2:-0.349162323453;FOXP1:-0.364716231883;FOX{D1,D2}:-0.37992685958;bHLH_family:-0.38540693172;NKX2-3_NKX2-5:-0.401333510163;HNF4A_NR2F1,2:-0.409338330805;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420778177812;ZFP161:-0.422561676127;ELK1,4_GABP{A,B1}:-0.440212118888;ZNF143:-0.459485022243;NRF1:-0.461839382698;NFKB1_REL_RELA:-0.466851617843;NFE2:-0.466876492192;NFIX:-0.470381939427;PDX1:-0.479425966067;IKZF2:-0.489446310891;RUNX1..3:-0.49234401963;ATF4:-0.503931663951;NFIL3:-0.504812973296;ATF5_CREB3:-0.516382441011;FOSL2:-0.520364749738;SREBF1,2:-0.52250338841;BREu{core}:-0.542617147746;FOXA2:-0.562437525715;DBP:-0.581184723528;ATF2:-0.58547850306;SNAI1..3:-0.585815304582;LEF1_TCF7_TCF7L1,2:-0.591155892713;ADNP_IRX_SIX_ZHX:-0.596567840901;GFI1:-0.655335342819;E2F1..5:-0.665022864612;RFX2..5_RFXANK_RFXAP:-0.675481375069;FOX{F1,F2,J1}:-0.693026004556;HOXA9_MEIS1:-0.695848062462;SOX17:-0.704468632555;PAX3,7:-0.725917412617;JUN:-0.753666257778;IRF7:-0.769296119879;RBPJ:-0.7878629905;ETS1,2:-0.804418690395;SPI1:-0.839351889042;SPIB:-0.867882686479;PITX1..3:-0.886120356443;FOXN1:-0.904417707126;PAX8:-0.918909131802;ZEB1:-0.950734512729;ELF1,2,4:-0.968940987021;SOX2:-0.976725568823;T:-0.999572189398;POU3F1..4:-1.01737478427;FOXQ1:-1.10531938743;TLX2:-1.13253638956;CRX:-1.14716054917;PBX1:-1.20234675415;NFY{A,B,C}:-1.2116720638;PAX2:-1.22336618771;TGIF1:-1.22596969745;CUX2:-1.24843525417;GATA6:-1.46959036159;POU2F1..3:-1.47482966665;OCT4_SOX2{dimer}:-1.47683979413;ALX1:-1.52669045229;RORA:-1.53064129762;MYOD1:-1.5456326901;SOX{8,9,10}:-1.66229448934;NANOG:-1.72086660471
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11410-118E6;search_select_hide=table117:FF:11410-118E6
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Chondrocyte - de diff, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12020
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecartilage
dev stage56 years old adult
sexmale
age56
cell typechondroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2230
catalog numberCA402-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005966
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12020 CAGE DRX008203 DRR009075
Accession ID Hg19

Library idBAMCTSS
CNhs12020 DRZ000500 DRZ001885
Accession ID Hg38

Library idBAMCTSS
CNhs12020 DRZ011850 DRZ013235
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005966
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GTGAAA sRNA-Seq DRX037197 DRR041563
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GTGAAA DRZ007205


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.2
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.374
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.157
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.122
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0587
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.716
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte1.16
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0587
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.74
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.265
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.501
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.11
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.511
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.728
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.228
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.722
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.198
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.198
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.841
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.762
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.481
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.11
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.116
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.823
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0616
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12020

Jaspar motifP-value
MA0002.20.0175
MA0003.10.293
MA0004.10.0998
MA0006.10.106
MA0007.10.516
MA0009.10.329
MA0014.10.333
MA0017.10.876
MA0018.20.00139
MA0019.10.99
MA0024.10.00553
MA0025.10.0247
MA0027.10.465
MA0028.10.00298
MA0029.10.689
MA0030.10.0634
MA0031.10.139
MA0035.20.00456
MA0038.10.0233
MA0039.20.0209
MA0040.10.882
MA0041.10.41
MA0042.10.906
MA0043.18.34298e-4
MA0046.10.144
MA0047.20.741
MA0048.10.0305
MA0050.10.114
MA0051.10.441
MA0052.10.0961
MA0055.10.777
MA0057.10.184
MA0058.10.0279
MA0059.10.289
MA0060.11.91328e-12
MA0061.10.067
MA0062.22.28332e-10
MA0065.20.964
MA0066.10.605
MA0067.10.0032
MA0068.10.325
MA0069.10.15
MA0070.10.614
MA0071.10.581
MA0072.10.0618
MA0073.10.948
MA0074.10.476
MA0076.14.41516e-4
MA0077.10.0404
MA0078.10.762
MA0079.20.783
MA0080.21.48203e-9
MA0081.10.00101
MA0083.10.171
MA0084.10.643
MA0087.10.361
MA0088.10.29
MA0090.10.00531
MA0091.10.321
MA0092.10.523
MA0093.10.0785
MA0099.21.14115e-7
MA0100.10.214
MA0101.11.92003e-4
MA0102.20.338
MA0103.10.0326
MA0104.20.0135
MA0105.10.136
MA0106.10.483
MA0107.14.12988e-4
MA0108.20.161
MA0111.10.446
MA0112.20.0105
MA0113.10.578
MA0114.10.68
MA0115.10.726
MA0116.10.274
MA0117.10.351
MA0119.10.478
MA0122.10.366
MA0124.10.211
MA0125.10.117
MA0131.10.278
MA0135.10.218
MA0136.11.76161e-12
MA0137.20.474
MA0138.20.345
MA0139.10.521
MA0140.10.00582
MA0141.10.116
MA0142.10.0218
MA0143.10.661
MA0144.10.832
MA0145.10.253
MA0146.10.193
MA0147.10.0306
MA0148.10.727
MA0149.10.975
MA0150.10.00136
MA0152.10.0527
MA0153.10.806
MA0154.10.763
MA0155.10.252
MA0156.16.91475e-12
MA0157.10.377
MA0159.10.593
MA0160.10.859
MA0162.10.0844
MA0163.10.0281
MA0164.10.813
MA0258.10.58
MA0259.10.176



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12020

Novel motifP-value
10.703
100.564
1000.949
1010.22
1020.123
1030.689
1040.891
1050.0224
1060.564
1070.0461
1080.157
1090.602
110.775
1100.995
1110.692
1120.99
1130.781
1140.278
1150.00101
1160.0111
1170.346
1180.734
1190.474
120.147
1200.662
1210.266
1220.0441
1230.0376
1240.0908
1250.616
1260.657
1270.706
1280.412
1290.315
130.844
1300.314
1310.518
1320.0229
1330.588
1340.329
1350.695
1360.368
1370.278
1380.501
1390.19
140.341
1400.348
1410.313
1420.617
1430.645
1440.331
1450.806
1460.0972
1470.468
1480.423
1490.0075
150.51
1500.485
1510.797
1520.0117
1530.656
1540.575
1550.729
1560.691
1570.59
1580.0378
1590.899
160.0824
1600.658
1610.581
1620.479
1630.841
1640.0386
1650.426
1660.00839
1670.691
1680.463
1690.0228
170.807
180.707
190.00427
20.303
200.631
210.0366
220.16
230.531
240.0801
250.396
260.895
270.651
280.116
290.17
30.755
300.609
310.636
324.03407e-14
330.706
340.539
350.722
360.0143
370.262
380.636
390.496
40.515
400.13
410.199
420.658
430.906
440.189
450.76
460.725
470.329
480.856
490.554
50.927
500.568
510.807
520.86
530.0965
540.753
550.752
560.995
570.927
580.242
590.0549
60.308
600.747
610.434
620.613
630.321
640.482
650.403
660.0418
670.997
680.569
690.281
70.379
700.223
710.861
720.406
730.00421
740.277
750.68
760.33
776.89005e-4
780.104
799.56579e-4
80.164
800.0136
810.656
820.16
830.597
840.606
850.126
860.895
870.924
880.207
890.0731
90.816
900.228
910.742
920.577
930.831
940.848
950.479
960.897
970.67
980.845
990.0248



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12020


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000246 (human chondrocyte de-differentiated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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