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{{f5samples
{{f5samples
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg38.nobarcode.bam
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|id=FF:11492-119E7
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|library_id=CNhs11319
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TGACCA.11492
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11492
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|name=Fibroblast - Choroid Plexus, donor1
|name=Fibroblast - Choroid Plexus, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:2.11633904586;TFAP4:1.88175865451;PAX1,9:1.80315073761;EBF1:1.71868170798;ZNF238:1.71672644747;NKX2-1,4:1.41407155959;NANOG{mouse}:1.37094775753;MAZ:1.15668219687;DBP:1.14262810363;ATF6:1.11862421652;HOX{A5,B5}:1.10733142241;TFCP2:1.07445224109;GTF2A1,2:1.06910889667;MYBL2:1.00853275921;RXRA_VDR{dimer}:0.995274535395;GFI1B:0.980897420566;EN1,2:0.980761846142;PATZ1:0.963042211345;ZIC1..3:0.956488040084;GZF1:0.954107376452;TEAD1:0.952323674003;AR:0.899598083443;NKX3-1:0.887096995224;GTF2I:0.868877179667;BPTF:0.825829663647;GFI1:0.825573962888;SP1:0.816690201305;SPZ1:0.804765388667;TLX1..3_NFIC{dimer}:0.802219338586;SOX5:0.782583250668;LEF1_TCF7_TCF7L1,2:0.76399540182;GLI1..3:0.761904828488;HAND1,2:0.748465471294;NR3C1:0.744533692567;HES1:0.739793913422;PAX5:0.729841612207;HMGA1,2:0.721769180611;NFATC1..3:0.690379259805;ZNF423:0.662258734207;IKZF1:0.65299187375;MZF1:0.636427787319;LHX3,4:0.623912238462;TFAP2{A,C}:0.579496085515;XCPE1{core}:0.565300770431;SRF:0.560654503138;CRX:0.556158252107;NFE2L2:0.551447967962;HIC1:0.490803464657;POU3F1..4:0.474229446153;NANOG:0.45168522808;TBX4,5:0.446777910813;TFAP2B:0.439611639341;XBP1:0.437480035508;STAT2,4,6:0.434812744724;ZBTB6:0.433517667235;MYFfamily:0.420678385474;NHLH1,2:0.405295893466;RXR{A,B,G}:0.404623405815;KLF4:0.37769167111;ESR1:0.377054704646;STAT1,3:0.369415882192;ALX4:0.361690178839;MED-1{core}:0.353714455714;RBPJ:0.331807873989;MTE{core}:0.320183567574;PDX1:0.292113068802;RREB1:0.264353682327;SOX17:0.258399401244;ZNF148:0.250022211591;HNF4A_NR2F1,2:0.247027040373;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.236831486261;PAX4:0.234313755788;STAT5{A,B}:0.225899513434;ESRRA:0.222543767;FOXD3:0.221157910865;PRDM1:0.216266543626;bHLH_family:0.211534182185;NR5A1,2:0.209904939182;NRF1:0.206990112545;ZNF384:0.186996664405;UFEwm:0.160383077309;NR6A1:0.157894861748;NFE2L1:0.151333013903;FOXM1:0.150582724101;PAX8:0.137516242452;CDC5L:0.13253268599;NKX2-2,8:0.130295758963;RORA:0.126559717624;T:0.122921749719;TBP:0.115204832102;NKX2-3_NKX2-5:0.105047473818;NFY{A,B,C}:0.104595131292;HOX{A6,A7,B6,B7}:0.1000074661;POU6F1:0.0984819884978;VSX1,2:0.0930912183756;FOXO1,3,4:0.0901644789228;TP53:0.0880630669467;HIF1A:0.085504979808;TEF:0.0828413140924;HMX1:0.0788747961343;ONECUT1,2:0.0751344236736;EP300:0.0745687752958;SOX2:0.0668656414806;HSF1,2:0.0544365781034;HBP1_HMGB_SSRP1_UBTF:0.0448876749348;HNF1A:0.0423671853541;ZFP161:0.0292741633221;NKX6-1,2:0.0282607178898;HLF:0.0241139866306;EGR1..3:0.0155100899003;FOX{D1,D2}:0.0145810000998;FOXA2:-0.0142993399967;ZNF143:-0.028542082147;AIRE:-0.0311546766955;SOX{8,9,10}:-0.0560701196593;GATA6:-0.0619021919808;MEF2{A,B,C,D}:-0.0629713311932;MAFB:-0.0708833222061;TGIF1:-0.0826619544787;ADNP_IRX_SIX_ZHX:-0.0992966777743;PBX1:-0.102167776485;NFIL3:-0.103157540317;RFX1:-0.108001052737;ELK1,4_GABP{A,B1}:-0.118704625778;REST:-0.126604348728;YY1:-0.127082079135;PRRX1,2:-0.127322697268;AHR_ARNT_ARNT2:-0.127480233545;ETS1,2:-0.128570209943;TFDP1:-0.153605303544;ELF1,2,4:-0.158775076855;POU5F1:-0.18604393724;FOS_FOS{B,L1}_JUN{B,D}:-0.198853922159;FOXL1:-0.202293421695;BACH2:-0.20936497012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.213304958721;FOSL2:-0.216463556964;SMAD1..7,9:-0.236873310749;PAX2:-0.238319446807;MTF1:-0.25014001144;TOPORS:-0.260722474902;EVI1:-0.26390060858;RUNX1..3:-0.267640781313;FOXP3:-0.278628196057;SREBF1,2:-0.287555563829;PAX3,7:-0.301436355404;OCT4_SOX2{dimer}:-0.30263025258;POU1F1:-0.315611089018;FOX{I1,J2}:-0.328973911206;GATA4:-0.333187577346;NFE2:-0.338100889214;CEBPA,B_DDIT3:-0.344463973788;NFKB1_REL_RELA:-0.348672840616;MYB:-0.354549773578;FOXQ1:-0.382488624619;BREu{core}:-0.384453440287;TLX2:-0.403307155314;NKX3-2:-0.424323155206;JUN:-0.438298435427;IRF1,2:-0.450499778673;NFIX:-0.452486614142;IRF7:-0.467644289973;SNAI1..3:-0.470469350826;HOX{A4,D4}:-0.471884860854;SPIB:-0.480748401222;NR1H4:-0.536095416586;SPI1:-0.548006740998;E2F1..5:-0.548166101614;DMAP1_NCOR{1,2}_SMARC:-0.564658264513;CUX2:-0.642219879573;FOX{F1,F2,J1}:-0.655272228206;FOXP1:-0.659887333102;LMO2:-0.673928762719;PAX6:-0.675390870778;POU2F1..3:-0.682815646386;RFX2..5_RFXANK_RFXAP:-0.688210420571;ATF4:-0.745581273903;ATF5_CREB3:-0.751528560136;ARID5B:-0.766934241148;CDX1,2,4:-0.776366958632;ALX1:-0.778770516749;CREB1:-0.800932218915;ATF2:-0.829117273378;GCM1,2:-0.92441367432;FOXN1:-0.937419827528;PPARG:-0.944322808539;ZEB1:-1.01425160093;HOXA9_MEIS1:-1.06318822434;MYOD1:-1.0973080291;PITX1..3:-1.29808223487;ZBTB16:-1.32703890499;IKZF2:-1.4587373916
|top_motifs=TAL1_TCF{3,4,12}:2.11633904586;TFAP4:1.88175865451;PAX1,9:1.80315073761;EBF1:1.71868170798;ZNF238:1.71672644747;NKX2-1,4:1.41407155959;NANOG{mouse}:1.37094775753;MAZ:1.15668219687;DBP:1.14262810363;ATF6:1.11862421652;HOX{A5,B5}:1.10733142241;TFCP2:1.07445224109;GTF2A1,2:1.06910889667;MYBL2:1.00853275921;RXRA_VDR{dimer}:0.995274535395;GFI1B:0.980897420566;EN1,2:0.980761846142;PATZ1:0.963042211345;ZIC1..3:0.956488040084;GZF1:0.954107376452;TEAD1:0.952323674003;AR:0.899598083443;NKX3-1:0.887096995224;GTF2I:0.868877179667;BPTF:0.825829663647;GFI1:0.825573962888;SP1:0.816690201305;SPZ1:0.804765388667;TLX1..3_NFIC{dimer}:0.802219338586;SOX5:0.782583250668;LEF1_TCF7_TCF7L1,2:0.76399540182;GLI1..3:0.761904828488;HAND1,2:0.748465471294;NR3C1:0.744533692567;HES1:0.739793913422;PAX5:0.729841612207;HMGA1,2:0.721769180611;NFATC1..3:0.690379259805;ZNF423:0.662258734207;IKZF1:0.65299187375;MZF1:0.636427787319;LHX3,4:0.623912238462;TFAP2{A,C}:0.579496085515;XCPE1{core}:0.565300770431;SRF:0.560654503138;CRX:0.556158252107;NFE2L2:0.551447967962;HIC1:0.490803464657;POU3F1..4:0.474229446153;NANOG:0.45168522808;TBX4,5:0.446777910813;TFAP2B:0.439611639341;XBP1:0.437480035508;STAT2,4,6:0.434812744724;ZBTB6:0.433517667235;MYFfamily:0.420678385474;NHLH1,2:0.405295893466;RXR{A,B,G}:0.404623405815;KLF4:0.37769167111;ESR1:0.377054704646;STAT1,3:0.369415882192;ALX4:0.361690178839;MED-1{core}:0.353714455714;RBPJ:0.331807873989;MTE{core}:0.320183567574;PDX1:0.292113068802;RREB1:0.264353682327;SOX17:0.258399401244;ZNF148:0.250022211591;HNF4A_NR2F1,2:0.247027040373;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.236831486261;PAX4:0.234313755788;STAT5{A,B}:0.225899513434;ESRRA:0.222543767;FOXD3:0.221157910865;PRDM1:0.216266543626;bHLH_family:0.211534182185;NR5A1,2:0.209904939182;NRF1:0.206990112545;ZNF384:0.186996664405;UFEwm:0.160383077309;NR6A1:0.157894861748;NFE2L1:0.151333013903;FOXM1:0.150582724101;PAX8:0.137516242452;CDC5L:0.13253268599;NKX2-2,8:0.130295758963;RORA:0.126559717624;T:0.122921749719;TBP:0.115204832102;NKX2-3_NKX2-5:0.105047473818;NFY{A,B,C}:0.104595131292;HOX{A6,A7,B6,B7}:0.1000074661;POU6F1:0.0984819884978;VSX1,2:0.0930912183756;FOXO1,3,4:0.0901644789228;TP53:0.0880630669467;HIF1A:0.085504979808;TEF:0.0828413140924;HMX1:0.0788747961343;ONECUT1,2:0.0751344236736;EP300:0.0745687752958;SOX2:0.0668656414806;HSF1,2:0.0544365781034;HBP1_HMGB_SSRP1_UBTF:0.0448876749348;HNF1A:0.0423671853541;ZFP161:0.0292741633221;NKX6-1,2:0.0282607178898;HLF:0.0241139866306;EGR1..3:0.0155100899003;FOX{D1,D2}:0.0145810000998;FOXA2:-0.0142993399967;ZNF143:-0.028542082147;AIRE:-0.0311546766955;SOX{8,9,10}:-0.0560701196593;GATA6:-0.0619021919808;MEF2{A,B,C,D}:-0.0629713311932;MAFB:-0.0708833222061;TGIF1:-0.0826619544787;ADNP_IRX_SIX_ZHX:-0.0992966777743;PBX1:-0.102167776485;NFIL3:-0.103157540317;RFX1:-0.108001052737;ELK1,4_GABP{A,B1}:-0.118704625778;REST:-0.126604348728;YY1:-0.127082079135;PRRX1,2:-0.127322697268;AHR_ARNT_ARNT2:-0.127480233545;ETS1,2:-0.128570209943;TFDP1:-0.153605303544;ELF1,2,4:-0.158775076855;POU5F1:-0.18604393724;FOS_FOS{B,L1}_JUN{B,D}:-0.198853922159;FOXL1:-0.202293421695;BACH2:-0.20936497012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.213304958721;FOSL2:-0.216463556964;SMAD1..7,9:-0.236873310749;PAX2:-0.238319446807;MTF1:-0.25014001144;TOPORS:-0.260722474902;EVI1:-0.26390060858;RUNX1..3:-0.267640781313;FOXP3:-0.278628196057;SREBF1,2:-0.287555563829;PAX3,7:-0.301436355404;OCT4_SOX2{dimer}:-0.30263025258;POU1F1:-0.315611089018;FOX{I1,J2}:-0.328973911206;GATA4:-0.333187577346;NFE2:-0.338100889214;CEBPA,B_DDIT3:-0.344463973788;NFKB1_REL_RELA:-0.348672840616;MYB:-0.354549773578;FOXQ1:-0.382488624619;BREu{core}:-0.384453440287;TLX2:-0.403307155314;NKX3-2:-0.424323155206;JUN:-0.438298435427;IRF1,2:-0.450499778673;NFIX:-0.452486614142;IRF7:-0.467644289973;SNAI1..3:-0.470469350826;HOX{A4,D4}:-0.471884860854;SPIB:-0.480748401222;NR1H4:-0.536095416586;SPI1:-0.548006740998;E2F1..5:-0.548166101614;DMAP1_NCOR{1,2}_SMARC:-0.564658264513;CUX2:-0.642219879573;FOX{F1,F2,J1}:-0.655272228206;FOXP1:-0.659887333102;LMO2:-0.673928762719;PAX6:-0.675390870778;POU2F1..3:-0.682815646386;RFX2..5_RFXANK_RFXAP:-0.688210420571;ATF4:-0.745581273903;ATF5_CREB3:-0.751528560136;ARID5B:-0.766934241148;CDX1,2,4:-0.776366958632;ALX1:-0.778770516749;CREB1:-0.800932218915;ATF2:-0.829117273378;GCM1,2:-0.92441367432;FOXN1:-0.937419827528;PPARG:-0.944322808539;ZEB1:-1.01425160093;HOXA9_MEIS1:-1.06318822434;MYOD1:-1.0973080291;PITX1..3:-1.29808223487;ZBTB16:-1.32703890499;IKZF2:-1.4587373916
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11492-119E7;search_select_hide=table117:FF:11492-119E7
}}
}}

Latest revision as of 18:04, 4 June 2020

Name:Fibroblast - Choroid Plexus, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11319
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuechoroid plexus
dev stageNA
sexNA
ageNA
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1325
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004719
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11319 CAGE DRX008249 DRR009121
Accession ID Hg19

Library idBAMCTSS
CNhs11319 DRZ000546 DRZ001931
Accession ID Hg38

Library idBAMCTSS
CNhs11319 DRZ011896 DRZ013281
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004719
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.TGACCA sRNA-Seq DRX037228 DRR041594
Accession ID Hg19

Library idBAMCTSS
SRhi10014.TGACCA DRZ007236


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.165
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0478
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.4
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0137
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.176
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.241
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.124
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.4
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00743
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.115
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.126
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0612
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0133
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.115
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.909
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.45
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.206
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.126
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.588
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.828
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11319

Jaspar motifP-value
MA0002.20.137
MA0003.10.424
MA0004.10.345
MA0006.10.312
MA0007.10.313
MA0009.10.33
MA0014.10.418
MA0017.10.4
MA0018.20.0038
MA0019.10.185
MA0024.10.0373
MA0025.10.0278
MA0027.10.653
MA0028.10.38
MA0029.10.446
MA0030.10.996
MA0031.10.593
MA0035.20.893
MA0038.10.0291
MA0039.20.965
MA0040.10.181
MA0041.10.199
MA0042.10.423
MA0043.10.0159
MA0046.10.435
MA0047.20.339
MA0048.10.679
MA0050.18.54658e-4
MA0051.10.0768
MA0052.10.11
MA0055.10.906
MA0057.10.995
MA0058.10.177
MA0059.10.0129
MA0060.10.132
MA0061.10.00493
MA0062.20.002
MA0065.20.0145
MA0066.10.924
MA0067.12.05221e-4
MA0068.10.0119
MA0069.10.203
MA0070.10.27
MA0071.10.8
MA0072.10.609
MA0073.10.674
MA0074.10.742
MA0076.10.263
MA0077.10.892
MA0078.10.648
MA0079.20.459
MA0080.21.1155e-6
MA0081.10.319
MA0083.10.0295
MA0084.10.252
MA0087.10.237
MA0088.10.207
MA0090.10.00438
MA0091.10.0169
MA0092.10.929
MA0093.10.441
MA0099.20.00361
MA0100.10.585
MA0101.10.00979
MA0102.20.0158
MA0103.10.00702
MA0104.20.013
MA0105.10.0214
MA0106.10.603
MA0107.10.0136
MA0108.20.153
MA0111.10.449
MA0112.20.834
MA0113.10.101
MA0114.10.101
MA0115.10.198
MA0116.10.0972
MA0117.10.187
MA0119.10.752
MA0122.10.93
MA0124.10.749
MA0125.10.399
MA0131.10.94
MA0135.10.503
MA0136.12.31296e-7
MA0137.20.809
MA0138.20.391
MA0139.10.708
MA0140.10.805
MA0141.10.555
MA0142.10.77
MA0143.10.433
MA0144.10.842
MA0145.10.769
MA0146.10.28
MA0147.10.0272
MA0148.10.521
MA0149.10.0157
MA0150.10.0024
MA0152.10.106
MA0153.10.0317
MA0154.10.49
MA0155.10.166
MA0156.11.98694e-4
MA0157.10.862
MA0159.10.0768
MA0160.10.0617
MA0162.10.182
MA0163.10.199
MA0164.10.927
MA0258.10.425
MA0259.10.359



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11319

Novel motifP-value
10.013
100.00457
1000.32
1010.294
1020.0427
1030.73
1040.492
1050.209
1060.359
1070.424
1080.815
1090.266
110.519
1100.929
1110.0884
1120.229
1130.301
1140.497
1150.512
1160.74
1170.105
1180.281
1190.274
120.216
1200.607
1210.993
1220.0756
1231.01455e-5
1240.903
1250.026
1260.621
1270.195
1280.57
1290.701
130.238
1300.243
1310.173
1320.206
1330.715
1340.107
1350.582
1360.378
1370.0198
1380.554
1390.323
140.715
1400.235
1410.623
1420.536
1430.683
1440.762
1450.806
1460.0485
1470.283
1480.54
1490.343
150.101
1500.913
1510.297
1520.796
1530.312
1540.0215
1550.0925
1560.708
1570.684
1580.0621
1590.861
160.804
1600.824
1610.824
1620.595
1630.536
1640.135
1650.386
1660.315
1670.0297
1680.807
1690.153
170.828
180.719
190.17
20.317
200.354
210.665
220.412
230.925
240.707
250.294
260.484
270.611
280.246
290.32
30.501
300.0877
310.755
324.48575e-11
330.247
340.225
350.438
360.0353
370.397
380.839
390.564
40.423
400.312
410.193
420.599
430.401
440.695
450.328
460.324
470.37
480.723
490.275
50.675
500.608
510.764
520.744
530.11
540.862
550.712
560.901
570.395
580.116
590.24
60.24
600.369
610.317
620.119
630.41
640.575
650.783
660.822
670.537
680.456
690.329
70.497
700.262
710.255
720.561
730.876
740.279
750.0635
760.0543
770.339
780.467
790.131
80.905
800.54
810.69
820.625
830.763
840.248
850.924
860.657
870.405
880.715
890.668
90.322
900.00778
910.306
920.624
930.846
940.41
950.0181
960.119
970.597
980.721
990.00323



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11319


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002549 (fibroblast of choroid plexus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0005629 (vascular plexus)
0002049 (vasculature)
0006876 (vasculature of organ)
0005358 (ventricle of nervous system)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001886 (choroid plexus)
0001016 (nervous system)
0004535 (cardiovascular system)
0004086 (brain ventricle)
0005282 (ventricular system of brain)
0001009 (circulatory system)
0005281 (ventricular system of central nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000060 (human fibroblast of choroid plexus sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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