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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004924
|DRA_sample_Accession=CAGE@SAMD00004924
|accession_numbers=CAGE;DRX008193;DRR009065;DRZ000490;DRZ001875
|accession_numbers=CAGE;DRX008193;DRR009065;DRZ000490;DRZ001875;DRZ011840;DRZ013225
|ancestors_in_anatomy_facet=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11792-124C1
|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11792-124C1
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13215.11792-124C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11792-124C1
|id=FF:11792-124C1
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
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|library_id=CNhs13215
|library_id=CNhs13215
|library_id_phase_based=2:CNhs13215
|library_id_phase_based=2:CNhs13215
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11792
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11792
|name=CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
|name=CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
|namespace=
|namespace=
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|profile_rnaseq=
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Line 91: Line 100:
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|top_motifs=ELF1,2,4:2.4225797992;CDX1,2,4:2.36152109406;PAX3,7:2.02955706361;TLX2:1.97495991439;RUNX1..3:1.80823656688;RORA:1.71028300915;PAX4:1.44400919428;ETS1,2:1.38177498649;POU1F1:1.32997559008;PDX1:1.26214604126;SPI1:1.2572236128;STAT1,3:1.25025715905;GATA6:1.24581861593;E2F1..5:1.24316591859;ZBTB16:1.14427908245;DMAP1_NCOR{1,2}_SMARC:1.13162252043;IKZF2:0.995564317624;ELK1,4_GABP{A,B1}:0.99351125788;IRF1,2:0.934219235629;T:0.919102345962;SPIB:0.891876347594;YY1:0.870388825265;PBX1:0.810769520764;NFY{A,B,C}:0.77872957115;FOXA2:0.743621136257;PITX1..3:0.723150673655;FOX{F1,F2,J1}:0.718544149635;BREu{core}:0.716569585125;CRX:0.699200147735;POU2F1..3:0.622188965876;LEF1_TCF7_TCF7L1,2:0.616154337024;TGIF1:0.61105031882;FOXP1:0.593509608725;NKX6-1,2:0.592124060955;MYB:0.573887419428;NKX2-2,8:0.55223844389;PAX8:0.547027498561;NANOG{mouse}:0.453961723694;IRF7:0.434031238455;MYOD1:0.429398501394;FOXO1,3,4:0.407153723862;NKX3-1:0.398875009398;NRF1:0.341411297461;SNAI1..3:0.324741621181;FOXM1:0.319624909439;BPTF:0.306981226276;ZEB1:0.299655584488;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.275572082126;OCT4_SOX2{dimer}:0.265882398857;RFX2..5_RFXANK_RFXAP:0.261777491931;ATF5_CREB3:0.246975281701;CREB1:0.243028612516;LMO2:0.218497393815;NR5A1,2:0.208572686042;STAT5{A,B}:0.183060426671;ZNF143:0.162951928202;SREBF1,2:0.156525542056;SPZ1:0.152270212342;FOX{D1,D2}:0.151274635406;AIRE:0.142274490519;CUX2:0.124698292138;HMX1:0.118238225192;HOX{A6,A7,B6,B7}:0.0982188030934;POU3F1..4:0.0978713199498;STAT2,4,6:0.0735893297243;FOX{I1,J2}:0.065328192823;SOX5:0.0312451627311;ALX1:0.00495541391476;FOXN1:-0.0230689976995;NFKB1_REL_RELA:-0.0409055225295;GFI1:-0.0560383240444;NR3C1:-0.0736799319077;PAX2:-0.0903577577763;GCM1,2:-0.0910314572599;HES1:-0.0933115389313;NKX2-1,4:-0.117062127864;JUN:-0.119819618523;AHR_ARNT_ARNT2:-0.141000178831;TFDP1:-0.155468566125;EP300:-0.160507880565;PAX6:-0.164526037412;HNF4A_NR2F1,2:-0.181668219889;TOPORS:-0.194332227294;PRRX1,2:-0.212845912842;NFATC1..3:-0.227735659826;TAL1_TCF{3,4,12}:-0.23318023217;NFIL3:-0.236948116103;FOXD3:-0.245243066725;RXRA_VDR{dimer}:-0.26017118765;SMAD1..7,9:-0.272122435622;GLI1..3:-0.274660697923;AR:-0.288301781438;ZNF148:-0.296491567897;NFE2L1:-0.309885736413;ATF4:-0.318511990286;HNF1A:-0.349609679472;NR1H4:-0.379115776318;RREB1:-0.388351379183;EVI1:-0.389934137742;HAND1,2:-0.415326012888;ZNF423:-0.426949778269;POU5F1:-0.428440522956;MYFfamily:-0.431128257173;SOX2:-0.433534868007;FOXQ1:-0.438131373726;HMGA1,2:-0.439580113102;ARID5B:-0.440268658138;VSX1,2:-0.464111085295;SOX{8,9,10}:-0.475945155446;ATF2:-0.478694303029;HOXA9_MEIS1:-0.486701938644;ADNP_IRX_SIX_ZHX:-0.489684832136;NKX2-3_NKX2-5:-0.510251975502;ZNF384:-0.524965854372;FOXP3:-0.526428299005;RBPJ:-0.548466043177;PPARG:-0.553919853902;ATF6:-0.566257832951;RFX1:-0.566496712603;BACH2:-0.570455727829;ZNF238:-0.571437266393;SRF:-0.574481660626;NFIX:-0.576535207054;NFE2L2:-0.581957109905;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.589400106455;CEBPA,B_DDIT3:-0.593482304493;FOS_FOS{B,L1}_JUN{B,D}:-0.604473419897;TFCP2:-0.621479883174;NFE2:-0.628712506912;TFAP4:-0.63240555448;ESR1:-0.64814802849;FOSL2:-0.696267014346;HLF:-0.711557056722;NHLH1,2:-0.712677301859;TP53:-0.737054020332;HBP1_HMGB_SSRP1_UBTF:-0.75193336092;NANOG:-0.754396555554;PAX5:-0.784863457083;UFEwm:-0.792441220222;REST:-0.794309858934;ALX4:-0.802971727954;ESRRA:-0.807918499612;DBP:-0.815819468543;ONECUT1,2:-0.827904147989;XCPE1{core}:-0.883599924917;LHX3,4:-0.889661510277;MEF2{A,B,C,D}:-0.896761673748;ZBTB6:-0.90936508934;CDC5L:-0.934340491975;MED-1{core}:-0.939824504668;HOX{A5,B5}:-0.973799782254;MZF1:-0.974574666273;MYBL2:-0.984708508093;TBX4,5:-1.03093035664;GFI1B:-1.04419037794;SOX17:-1.05084037165;MTE{core}:-1.08458474303;ZFP161:-1.11059656206;NR6A1:-1.11110666689;GATA4:-1.11312469188;KLF4:-1.11418270695;MAFB:-1.12147562741;HIF1A:-1.13885659483;EBF1:-1.14250238556;MAZ:-1.1593502465;PRDM1:-1.1900718137;GTF2I:-1.21018412467;HOX{A4,D4}:-1.22547153947;HSF1,2:-1.24396222762;EGR1..3:-1.26478206479;MTF1:-1.2657690984;POU6F1:-1.27340077154;TEF:-1.31277077181;GZF1:-1.32634814926;NKX3-2:-1.32664433237;EN1,2:-1.38652391648;GTF2A1,2:-1.39009122427;TFAP2B:-1.43396329261;bHLH_family:-1.44501274323;PATZ1:-1.44676798902;HIC1:-1.45503082563;TBP:-1.46404935128;ZIC1..3:-1.47356279401;RXR{A,B,G}:-1.58045686094;TFAP2{A,C}:-1.58151443374;TEAD1:-1.58979762693;SP1:-1.64935541454;TLX1..3_NFIC{dimer}:-1.7761799137;XBP1:-1.79941677996;PAX1,9:-1.80675293102;IKZF1:-1.98534804817;FOXL1:-2.03566617497
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11792-124C1;search_select_hide=table117:FF:11792-124C1
}}
}}

Latest revision as of 18:20, 4 June 2020

Name:CD4+CD25-CD45RA- memory conventional T cells expanded, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13215
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number13
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004924
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13215 CAGE DRX008193 DRR009065
Accession ID Hg19

Library idBAMCTSS
CNhs13215 DRZ000490 DRZ001875
Accession ID Hg38

Library idBAMCTSS
CNhs13215 DRZ011840 DRZ013225
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.0887
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.139
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.421
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0466
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0466
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0.162
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0754
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0275
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.272
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.207
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.74
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.312
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0466
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0823
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0466
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.109
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.0466
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.824
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.664
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.47
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.563
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.185
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.627
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.37
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.124
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.337
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.128
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.154
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0466
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.805
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.873
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0466
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.127
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13215

Jaspar motifP-value
MA0002.21.76451e-8
MA0003.10.85
MA0004.10.805
MA0006.10.534
MA0007.10.576
MA0009.10.249
MA0014.10.783
MA0017.10.0929
MA0018.20.885
MA0019.10.512
MA0024.10.0307
MA0025.10.0802
MA0027.10.602
MA0028.11.6218e-5
MA0029.10.495
MA0030.10.385
MA0031.10.48
MA0035.20.0416
MA0038.10.157
MA0039.20.772
MA0040.10.207
MA0041.10.317
MA0042.10.697
MA0043.10.0482
MA0046.10.0991
MA0047.20.411
MA0048.10.786
MA0050.16.159e-7
MA0051.10.0095
MA0052.10.00323
MA0055.10.918
MA0057.10.994
MA0058.10.937
MA0059.10.381
MA0060.10.415
MA0061.10.0923
MA0062.21.10158e-15
MA0065.20.029
MA0066.10.271
MA0067.10.976
MA0068.10.124
MA0069.10.807
MA0070.10.582
MA0071.10.427
MA0072.10.707
MA0073.10.786
MA0074.10.522
MA0076.12.67799e-8
MA0077.10.0421
MA0078.10.903
MA0079.20.494
MA0080.21.08937e-12
MA0081.10.0239
MA0083.10.0438
MA0084.10.894
MA0087.10.448
MA0088.10.0316
MA0090.11.98398e-4
MA0091.10.824
MA0092.10.492
MA0093.10.779
MA0099.23.97943e-4
MA0100.10.216
MA0101.10.709
MA0102.20.322
MA0103.10.0643
MA0104.20.179
MA0105.13.65937e-5
MA0106.10.808
MA0107.10.253
MA0108.23.46494e-14
MA0111.10.055
MA0112.20.169
MA0113.10.915
MA0114.10.154
MA0115.10.389
MA0116.11.87927e-5
MA0117.10.781
MA0119.10.489
MA0122.10.817
MA0124.10.828
MA0125.10.723
MA0131.10.259
MA0135.10.0888
MA0136.14.09859e-24
MA0137.20.218
MA0138.20.178
MA0139.10.00516
MA0140.10.0538
MA0141.10.464
MA0142.10.455
MA0143.10.0998
MA0144.10.24
MA0145.10.796
MA0146.10.163
MA0147.10.152
MA0148.10.989
MA0149.10.0749
MA0150.10.305
MA0152.10.0278
MA0153.10.105
MA0154.10.0165
MA0155.10.717
MA0156.12.32561e-22
MA0157.10.138
MA0159.10.222
MA0160.10.364
MA0162.10.665
MA0163.15.84504e-12
MA0164.10.685
MA0258.10.0763
MA0259.10.387



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13215

Novel motifP-value
10.113
100.0103
1000.767
1010.0955
1020.522
1030.16
1040.679
1050.154
1060.596
1070.478
1080.675
1090.0406
110.0402
1100.411
1110.384
1120.122
1130.474
1140.238
1150.116
1160.582
1170.0064
1180.4
1190.539
120.509
1200.482
1210.634
1220.326
1234.42326e-4
1240.0599
1250.978
1260.434
1270.377
1280.663
1290.161
130.415
1300.889
1310.803
1320.959
1330.247
1340.702
1350.748
1360.657
1370.0709
1380.289
1390.268
140.396
1400.0213
1410.655
1420.952
1430.00139
1440.479
1450.248
1460.442
1470.0258
1480.0669
1490.807
150.0998
1500.463
1510.6
1520.329
1530.982
1540.724
1550.0143
1560.585
1570.0644
1580.289
1590.383
160.623
1600.559
1610.175
1620.166
1630.448
1640.118
1650.183
1660.797
1670.269
1680.2
1690.348
170.872
180.611
190.609
20.909
200.758
210.312
220.989
230.54
240.586
250.0645
260.123
270.155
280.56
290.0176
30.0464
300.198
310.932
320.307
330.528
340.958
350.185
360.0248
370.229
380.666
390.318
40.609
400.348
410.485
420.0647
430.444
440.268
450.499
460.0895
470.0115
480.0349
490.161
50.565
500.786
510.609
520.298
530.216
540.806
550.552
560.465
570.206
580.111
590.31
60.673
600.514
610.0812
620.0481
630.514
640.128
650.916
660.819
670.924
680.688
690.864
70.243
700.0586
710.0351
720.0561
730.552
740.379
750.0162
760.434
770.754
780.0296
790.239
80.431
800.0948
810.42
820.139
830.614
840.196
850.705
860.168
870.362
880.749
890.682
90.761
900.0166
910.636
920.395
930.205
940.107
950.0103
960.0541
970.311
980.303
990.247



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13215


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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