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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005387
|DRA_sample_Accession=CAGE@SAMD00005387
|accession_numbers=CAGE;DRX008182;DRR009054;DRZ000479;DRZ001864
|accession_numbers=CAGE;DRX008182;DRR009054;DRZ000479;DRZ001864;DRZ011829;DRZ013214
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13811.11916-125G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13811.11916-125G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13811.11916-125G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11916-125G8
|id=FF:11916-125G8
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
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|library_id=CNhs13811
|library_id=CNhs13811
|library_id_phase_based=2:CNhs13811
|library_id_phase_based=2:CNhs13811
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11916
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11916
|name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2
|name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2
|namespace=
|namespace=
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|profile_rnaseq=
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Line 91: Line 100:
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|top_motifs=ZBTB16:2.74253672649;CDX1,2,4:2.22051977968;PAX3,7:2.1255853689;ELF1,2,4:2.09584340837;PITX1..3:1.76032529528;NKX6-1,2:1.73193930703;IKZF2:1.70261644835;RUNX1..3:1.6882330424;RORA:1.67195658522;FOXP1:1.66803134185;TLX2:1.63789460427;ETS1,2:1.33791969408;POU2F1..3:1.28992079484;PAX4:1.28078695382;TOPORS:1.24362174169;SPI1:1.17657795722;IRF1,2:1.13285088223;PDX1:1.13014663743;FOX{F1,F2,J1}:1.09713376378;AIRE:1.08363732361;DMAP1_NCOR{1,2}_SMARC:1.07666228867;POU1F1:1.06362599435;BPTF:1.01680026976;NKX3-1:0.912313508057;GATA6:0.859011187791;ELK1,4_GABP{A,B1}:0.822874881054;CRX:0.806092021694;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.793216521923;HMX1:0.785317682496;E2F1..5:0.699357199887;STAT1,3:0.671996217385;SPIB:0.638714922653;LMO2:0.61171044295;PBX1:0.596376960567;STAT2,4,6:0.579471386969;BREu{core}:0.576486569948;ZNF384:0.560674220731;STAT5{A,B}:0.551335700489;MYOD1:0.542626540832;YY1:0.536398340103;NANOG{mouse}:0.514414559509;CREB1:0.502547536779;ZEB1:0.481202446686;FOXO1,3,4:0.451607718404;FOX{D1,D2}:0.448567789963;FOXM1:0.376443220198;ATF5_CREB3:0.366308600475;NFKB1_REL_RELA:0.353332607478;SNAI1..3:0.349069945452;IRF7:0.347376776537;EVI1:0.320574580296;HES1:0.301985851359;NFY{A,B,C}:0.294530749866;NKX2-2,8:0.282520990198;OCT4_SOX2{dimer}:0.280710823532;PAX8:0.267024793128;MYB:0.252844944536;TGIF1:0.217336862277;FOXQ1:0.217321164219;RFX2..5_RFXANK_RFXAP:0.209115700127;PAX2:0.173586977572;NR5A1,2:0.167523440578;SMAD1..7,9:0.161314216834;SOX5:0.148912969012;HOX{A6,A7,B6,B7}:0.130625379827;SREBF1,2:0.123382267041;LEF1_TCF7_TCF7L1,2:0.10064701807;FOXP3:0.0679160032101;CUX2:0.0635881419217;DBP:0.0631183331576;FOXD3:0.00228851462359;EP300:-0.0155901597556;NRF1:-0.044075824823;FOX{I1,J2}:-0.0480652352817;TP53:-0.0531291812021;SPZ1:-0.0582354986915;ZNF423:-0.100349970888;GFI1:-0.141152428135;HNF4A_NR2F1,2:-0.141749023658;FOXA2:-0.156165836781;ZNF148:-0.158265091247;ATF4:-0.1583027534;ZNF143:-0.175731568817;HAND1,2:-0.193204842048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.194321143101;T:-0.198429456496;FOXN1:-0.214372397676;RXRA_VDR{dimer}:-0.218881357198;RREB1:-0.225717670866;ONECUT1,2:-0.230034913802;JUN:-0.23777521131;GCM1,2:-0.243434637205;NFATC1..3:-0.26394209466;CDC5L:-0.265347022267;NFE2L1:-0.265527614334;GLI1..3:-0.28447574189;ATF2:-0.302954802738;NR1H4:-0.378422844854;AHR_ARNT_ARNT2:-0.399732213845;TAL1_TCF{3,4,12}:-0.404640739348;MYFfamily:-0.417284636695;NR3C1:-0.424129106411;UFEwm:-0.434342155126;ALX1:-0.437729280043;PRRX1,2:-0.438865633113;TFDP1:-0.444616559638;SRF:-0.449043827682;TFCP2:-0.459753363888;NFE2:-0.47114238861;CEBPA,B_DDIT3:-0.473487808889;NFIL3:-0.478037099584;NKX2-1,4:-0.489271245831;ARID5B:-0.492253903065;HNF1A:-0.492497154976;FOS_FOS{B,L1}_JUN{B,D}:-0.534630723033;AR:-0.541212852289;PPARG:-0.544637891077;BACH2:-0.547201733339;ALX4:-0.548641093923;HOXA9_MEIS1:-0.563523176045;POU3F1..4:-0.586487978005;ATF6:-0.591361786492;SOX2:-0.622045722607;SOX{8,9,10}:-0.680423424962;XCPE1{core}:-0.685735244169;ESR1:-0.718162018611;NHLH1,2:-0.778572512042;REST:-0.781597269365;NFIX:-0.785701476638;ZNF238:-0.796379908509;NFE2L2:-0.798825632275;NKX2-3_NKX2-5:-0.799038797616;FOSL2:-0.810490648407;TFAP4:-0.813644019279;PRDM1:-0.822095315385;ZBTB6:-0.82977261454;POU5F1:-0.834664209908;HMGA1,2:-0.845664270508;VSX1,2:-0.850378299269;NR6A1:-0.869430876758;RFX1:-0.876773352144;PAX5:-0.899093442912;PAX6:-0.906022994088;GATA4:-0.915756938698;GFI1B:-0.92097781855;TEF:-0.922343243593;MAFB:-0.934499882692;bHLH_family:-0.939792941497;HLF:-0.951861815006;LHX3,4:-0.962368636962;HIF1A:-0.974914256631;MED-1{core}:-0.977080916275;KLF4:-0.984813363896;MYBL2:-0.986226925357;ADNP_IRX_SIX_ZHX:-1.01520877922;HBP1_HMGB_SSRP1_UBTF:-1.0421500589;NANOG:-1.04756113415;EGR1..3:-1.0583453712;MEF2{A,B,C,D}:-1.07147938111;FOXL1:-1.07668307277;HSF1,2:-1.1327111334;EBF1:-1.13990025819;ZFP161:-1.14178291465;MTF1:-1.16590736614;ESRRA:-1.2030229622;MTE{core}:-1.22747999397;MAZ:-1.2374602786;HOX{A5,B5}:-1.23788931042;TFAP2B:-1.27377118999;MZF1:-1.29027774607;GTF2A1,2:-1.32020596911;GZF1:-1.3481618527;POU6F1:-1.3534055973;GTF2I:-1.35903796665;TFAP2{A,C}:-1.37246389803;HIC1:-1.38191115902;TBP:-1.3847862927;HOX{A4,D4}:-1.39847569416;TBX4,5:-1.41197843535;ZIC1..3:-1.44695395132;SOX17:-1.51915420206;EN1,2:-1.55364539189;PATZ1:-1.60271746269;PAX1,9:-1.61194522208;SP1:-1.64687669958;RXR{A,B,G}:-1.64756349558;TEAD1:-1.68029231953;RBPJ:-1.7353839908;TLX1..3_NFIC{dimer}:-1.74253568982;NKX3-2:-1.84798369112;IKZF1:-2.1148263193;XBP1:-2.31219743813
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11916-125G8;search_select_hide=table117:FF:11916-125G8
}}
}}

Latest revision as of 18:29, 4 June 2020

Name:CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13811
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number59-60
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005387
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13811 CAGE DRX008182 DRR009054
Accession ID Hg19

Library idBAMCTSS
CNhs13811 DRZ000479 DRZ001864
Accession ID Hg38

Library idBAMCTSS
CNhs13811 DRZ011829 DRZ013214
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.306
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0299
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0151
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.189
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.141
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.121
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0523
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0.739
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.141
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0801
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.307
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.661
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0646
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0991
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0361
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0523
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0991
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0865
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0232
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.0991
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.951
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.653
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.442
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.5
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0991
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.404
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.464
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.404
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0523
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.19
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.187
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0523
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.246
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.231
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0523
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.616
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.849
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0523
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0523
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13811

Jaspar motifP-value
MA0002.22.77628e-5
MA0003.10.897
MA0004.10.848
MA0006.10.737
MA0007.10.839
MA0009.10.349
MA0014.10.944
MA0017.10.0838
MA0018.20.999
MA0019.10.103
MA0024.10.479
MA0025.10.188
MA0027.10.764
MA0028.10.0016
MA0029.10.381
MA0030.10.307
MA0031.10.833
MA0035.20.167
MA0038.10.0278
MA0039.20.941
MA0040.10.339
MA0041.10.237
MA0042.10.47
MA0043.10.131
MA0046.10.071
MA0047.20.899
MA0048.10.89
MA0050.11.8144e-7
MA0051.10.0206
MA0052.10.0095
MA0055.10.865
MA0057.10.866
MA0058.10.756
MA0059.10.373
MA0060.10.24
MA0061.10.00829
MA0062.24.39736e-10
MA0065.20.0296
MA0066.10.295
MA0067.10.578
MA0068.10.385
MA0069.10.683
MA0070.10.46
MA0071.10.464
MA0072.10.691
MA0073.10.832
MA0074.10.864
MA0076.11.83922e-4
MA0077.10.0659
MA0078.10.704
MA0079.20.419
MA0080.25.21874e-10
MA0081.10.0795
MA0083.10.132
MA0084.10.803
MA0087.10.379
MA0088.10.164
MA0090.12.48428e-4
MA0091.10.868
MA0092.10.709
MA0093.10.945
MA0099.27.87188e-4
MA0100.10.854
MA0101.10.544
MA0102.20.255
MA0103.10.0271
MA0104.20.286
MA0105.14.59636e-7
MA0106.10.636
MA0107.10.961
MA0108.22.99292e-11
MA0111.10.0489
MA0112.20.0785
MA0113.10.703
MA0114.10.148
MA0115.10.463
MA0116.11.96678e-6
MA0117.10.801
MA0119.10.903
MA0122.10.94
MA0124.10.37
MA0125.10.364
MA0131.10.457
MA0135.10.0872
MA0136.16.81159e-17
MA0137.20.391
MA0138.20.213
MA0139.10.0246
MA0140.10.386
MA0141.10.443
MA0142.10.629
MA0143.10.168
MA0144.10.383
MA0145.10.861
MA0146.10.0714
MA0147.10.255
MA0148.10.479
MA0149.10.0341
MA0150.10.892
MA0152.10.0386
MA0153.10.0702
MA0154.10.0132
MA0155.10.856
MA0156.11.10357e-11
MA0157.10.413
MA0159.10.227
MA0160.10.419
MA0162.10.518
MA0163.11.36512e-11
MA0164.10.821
MA0258.10.0253
MA0259.10.45



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13811

Novel motifP-value
10.0806
100.00715
1000.414
1010.0875
1020.455
1030.53
1040.807
1050.333
1060.223
1070.936
1080.864
1090.0359
110.0183
1100.37
1110.147
1120.111
1130.43
1140.113
1150.616
1160.316
1170.0023
1180.438
1190.316
120.601
1200.258
1210.563
1220.778
1231.69696e-6
1240.183
1250.954
1260.633
1270.411
1280.564
1290.331
130.308
1300.649
1310.811
1320.774
1330.131
1340.69
1350.651
1360.692
1370.0832
1380.218
1390.125
140.274
1400.127
1410.451
1420.7
1430.0109
1440.417
1450.121
1460.771
1470.105
1480.0262
1490.888
150.233
1500.506
1510.486
1520.716
1530.808
1540.473
1550.0361
1560.616
1570.186
1580.192
1590.77
160.506
1600.359
1610.0763
1620.327
1630.337
1640.0694
1650.312
1660.84
1670.228
1680.98
1690.108
170.692
180.554
190.751
20.992
200.594
210.166
220.866
230.955
240.857
250.183
260.0349
270.317
280.561
290.026
30.0267
300.0913
310.983
320.704
330.561
340.944
350.28
360.0141
370.139
380.526
390.759
40.917
400.217
410.692
420.0865
430.276
440.23
450.481
460.0588
470.00938
480.0324
490.0871
50.85
500.795
510.667
520.56
530.168
540.705
550.781
560.441
570.136
580.17
590.372
60.419
600.356
610.122
620.0844
630.36
640.14
650.547
660.779
670.949
680.958
690.798
70.327
700.0312
710.0347
720.0742
730.321
740.555
750.0258
760.279
770.964
780.044
790.939
80.342
800.304
810.245
820.05
830.56
840.0484
850.91
860.129
870.513
880.849
890.501
90.957
900.0601
910.36
920.363
930.459
940.17
950.013
960.0508
970.232
980.134
990.17



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13811


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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