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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005043
|DRA_sample_Accession=CAGE@SAMD00005043
|accession_numbers=CAGE;DRX008561;DRR009433;DRZ000858;DRZ002243
|accession_numbers=CAGE;DRX008561;DRR009433;DRZ000858;DRZ002243;DRZ012208;DRZ013593
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
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|library_id=CNhs12378
|library_id=CNhs12378
|library_id_phase_based=2:CNhs12378
|library_id_phase_based=2:CNhs12378
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11762
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11762
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor3
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 96: Line 100:
|top_motifs=TAL1_TCF{3,4,12}:1.87361359991;HSF1,2:1.79600822895;HOX{A5,B5}:1.7862154745;GLI1..3:1.76558519414;GZF1:1.64673745846;NKX3-1:1.60383645957;HMGA1,2:1.54000105137;HIF1A:1.30933597337;NR6A1:1.23892799555;ESR1:1.23715053635;SMAD1..7,9:1.16858227478;ZIC1..3:1.13181973822;TEF:1.10184817833;GCM1,2:1.08049959722;ZNF238:1.07409800999;XBP1:1.06482449881;EVI1:1.04711708468;SRF:1.01560798921;TEAD1:0.984736590505;ATF6:0.983735351394;RXRA_VDR{dimer}:0.982530160643;ZNF423:0.943882230693;MYBL2:0.833987673951;UFEwm:0.828942117219;AIRE:0.822457103406;PAX4:0.795384539171;XCPE1{core}:0.78123410908;MAFB:0.780811360887;MAZ:0.780704851629;EN1,2:0.767389306852;IKZF1:0.754872259013;PAX5:0.754069055576;ONECUT1,2:0.753608988945;EBF1:0.745854287615;NKX3-2:0.738723469913;NFATC1..3:0.735930939721;NR3C1:0.724104624403;TFCP2:0.716764050535;RFX1:0.704990748938;RXR{A,B,G}:0.683707374751;NFE2L2:0.678578295686;GTF2I:0.675529656356;ZNF148:0.654307261139;DBP:0.653974602733;ZNF384:0.645900941603;PRDM1:0.64320553957;TLX1..3_NFIC{dimer}:0.599254193854;FOXM1:0.592996268092;GTF2A1,2:0.584563591546;TBP:0.583590733281;NKX2-1,4:0.53824054591;ZBTB6:0.52253378054;HMX1:0.517953139981;NFIX:0.517167557771;MZF1:0.50867618898;HOX{A4,D4}:0.507522093455;PAX6:0.506014267826;TP53:0.496868682962;ALX4:0.466794716447;BACH2:0.446163878189;SP1:0.432851628011;PAX1,9:0.428220838874;HLF:0.426833814893;FOS_FOS{B,L1}_JUN{B,D}:0.426264270148;NFE2L1:0.370721337675;TBX4,5:0.340641197761;STAT2,4,6:0.323463074287;LHX3,4:0.31725072662;PATZ1:0.309340779579;ZBTB16:0.307520160878;PPARG:0.298191002312;ALX1:0.295407518901;TLX2:0.285867061798;MTE{core}:0.284086976786;EP300:0.281631889435;TFAP2B:0.234271425829;GATA4:0.234197169991;NR1H4:0.228757269146;KLF4:0.228721177418;CRX:0.227323597459;TFAP4:0.226457190324;NFE2:0.22500703029;NANOG{mouse}:0.21601374047;ARID5B:0.209755193838;PBX1:0.200470774771;POU6F1:0.185160807788;PAX2:0.182109764994;HES1:0.179482035849;ATF2:0.178653713867;NFIL3:0.171605454102;RREB1:0.153706052607;NFKB1_REL_RELA:0.143894639452;EGR1..3:0.134646150567;SOX17:0.126356070586;HBP1_HMGB_SSRP1_UBTF:0.11456517203;FOX{I1,J2}:0.0977705504758;FOSL2:0.0924515558384;HNF1A:0.0920279516369;RUNX1..3:0.0798909160434;JUN:0.0760287430456;PAX8:0.0759353256836;CDX1,2,4:0.0622939245404;HIC1:0.0527114940913;ADNP_IRX_SIX_ZHX:0.0444334997628;SPZ1:0.0214955335615;PAX3,7:0.00257930691559;REST:0.00221700768693;AR:0.0014222826909;TOPORS:-0.0121816757369;GFI1B:-0.0130253340659;AHR_ARNT_ARNT2:-0.0178270039517;SREBF1,2:-0.0289555157864;NHLH1,2:-0.0535207540735;FOXP3:-0.0730375725975;bHLH_family:-0.0893443448047;CDC5L:-0.0923157210833;IRF7:-0.0985079020335;ELK1,4_GABP{A,B1}:-0.102759607277;IRF1,2:-0.109505229978;STAT5{A,B}:-0.124650390254;HAND1,2:-0.127879568867;STAT1,3:-0.128693161566;MEF2{A,B,C,D}:-0.129234945458;TFAP2{A,C}:-0.153767727024;CREB1:-0.153912610476;GATA6:-0.168828627079;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.173326807474;FOX{D1,D2}:-0.195944106247;LEF1_TCF7_TCF7L1,2:-0.206525963942;SOX2:-0.229608538201;NKX2-3_NKX2-5:-0.23119663055;POU5F1:-0.233335350082;HOXA9_MEIS1:-0.275151362581;CEBPA,B_DDIT3:-0.277058578782;MYFfamily:-0.282097450766;ZFP161:-0.300285603762;POU3F1..4:-0.321909069667;LMO2:-0.321971662029;MTF1:-0.331647171311;HNF4A_NR2F1,2:-0.340229655958;RFX2..5_RFXANK_RFXAP:-0.376395879788;NKX6-1,2:-0.387886417583;ESRRA:-0.393355358975;ATF5_CREB3:-0.40139649974;NRF1:-0.406185483885;FOXA2:-0.411241500452;MED-1{core}:-0.41499711731;DMAP1_NCOR{1,2}_SMARC:-0.415551035774;FOXL1:-0.423703302085;SNAI1..3:-0.434597667821;ZNF143:-0.43533341172;ETS1,2:-0.444440566562;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.485704598824;NANOG:-0.501557126628;TGIF1:-0.51368321513;POU2F1..3:-0.52921139317;SPI1:-0.538791879908;POU1F1:-0.554066058716;ELF1,2,4:-0.560995284386;FOXP1:-0.562169914801;FOXD3:-0.576691363451;SOX5:-0.603875761611;FOXQ1:-0.604698402185;ZEB1:-0.605948806281;RBPJ:-0.631813430434;FOXO1,3,4:-0.656198450252;MYOD1:-0.659087755608;ATF4:-0.660086409524;PRRX1,2:-0.667506435648;NKX2-2,8:-0.680507880534;NR5A1,2:-0.68733187043;FOXN1:-0.708063299593;E2F1..5:-0.711303316675;YY1:-0.72760481009;SPIB:-0.737520663563;IKZF2:-0.747381391267;MYB:-0.757862441225;GFI1:-0.801795268205;RORA:-0.814335328293;FOX{F1,F2,J1}:-0.826769491073;TFDP1:-0.860154664913;NFY{A,B,C}:-0.887445973516;BPTF:-0.92144964124;OCT4_SOX2{dimer}:-0.935642334216;CUX2:-0.981050018383;VSX1,2:-1.02885121659;SOX{8,9,10}:-1.09714254267;T:-1.19458675834;BREu{core}:-1.21231500928;PDX1:-1.32873893517;HOX{A6,A7,B6,B7}:-1.34599925113;PITX1..3:-1.57958536787
|top_motifs=TAL1_TCF{3,4,12}:1.87361359991;HSF1,2:1.79600822895;HOX{A5,B5}:1.7862154745;GLI1..3:1.76558519414;GZF1:1.64673745846;NKX3-1:1.60383645957;HMGA1,2:1.54000105137;HIF1A:1.30933597337;NR6A1:1.23892799555;ESR1:1.23715053635;SMAD1..7,9:1.16858227478;ZIC1..3:1.13181973822;TEF:1.10184817833;GCM1,2:1.08049959722;ZNF238:1.07409800999;XBP1:1.06482449881;EVI1:1.04711708468;SRF:1.01560798921;TEAD1:0.984736590505;ATF6:0.983735351394;RXRA_VDR{dimer}:0.982530160643;ZNF423:0.943882230693;MYBL2:0.833987673951;UFEwm:0.828942117219;AIRE:0.822457103406;PAX4:0.795384539171;XCPE1{core}:0.78123410908;MAFB:0.780811360887;MAZ:0.780704851629;EN1,2:0.767389306852;IKZF1:0.754872259013;PAX5:0.754069055576;ONECUT1,2:0.753608988945;EBF1:0.745854287615;NKX3-2:0.738723469913;NFATC1..3:0.735930939721;NR3C1:0.724104624403;TFCP2:0.716764050535;RFX1:0.704990748938;RXR{A,B,G}:0.683707374751;NFE2L2:0.678578295686;GTF2I:0.675529656356;ZNF148:0.654307261139;DBP:0.653974602733;ZNF384:0.645900941603;PRDM1:0.64320553957;TLX1..3_NFIC{dimer}:0.599254193854;FOXM1:0.592996268092;GTF2A1,2:0.584563591546;TBP:0.583590733281;NKX2-1,4:0.53824054591;ZBTB6:0.52253378054;HMX1:0.517953139981;NFIX:0.517167557771;MZF1:0.50867618898;HOX{A4,D4}:0.507522093455;PAX6:0.506014267826;TP53:0.496868682962;ALX4:0.466794716447;BACH2:0.446163878189;SP1:0.432851628011;PAX1,9:0.428220838874;HLF:0.426833814893;FOS_FOS{B,L1}_JUN{B,D}:0.426264270148;NFE2L1:0.370721337675;TBX4,5:0.340641197761;STAT2,4,6:0.323463074287;LHX3,4:0.31725072662;PATZ1:0.309340779579;ZBTB16:0.307520160878;PPARG:0.298191002312;ALX1:0.295407518901;TLX2:0.285867061798;MTE{core}:0.284086976786;EP300:0.281631889435;TFAP2B:0.234271425829;GATA4:0.234197169991;NR1H4:0.228757269146;KLF4:0.228721177418;CRX:0.227323597459;TFAP4:0.226457190324;NFE2:0.22500703029;NANOG{mouse}:0.21601374047;ARID5B:0.209755193838;PBX1:0.200470774771;POU6F1:0.185160807788;PAX2:0.182109764994;HES1:0.179482035849;ATF2:0.178653713867;NFIL3:0.171605454102;RREB1:0.153706052607;NFKB1_REL_RELA:0.143894639452;EGR1..3:0.134646150567;SOX17:0.126356070586;HBP1_HMGB_SSRP1_UBTF:0.11456517203;FOX{I1,J2}:0.0977705504758;FOSL2:0.0924515558384;HNF1A:0.0920279516369;RUNX1..3:0.0798909160434;JUN:0.0760287430456;PAX8:0.0759353256836;CDX1,2,4:0.0622939245404;HIC1:0.0527114940913;ADNP_IRX_SIX_ZHX:0.0444334997628;SPZ1:0.0214955335615;PAX3,7:0.00257930691559;REST:0.00221700768693;AR:0.0014222826909;TOPORS:-0.0121816757369;GFI1B:-0.0130253340659;AHR_ARNT_ARNT2:-0.0178270039517;SREBF1,2:-0.0289555157864;NHLH1,2:-0.0535207540735;FOXP3:-0.0730375725975;bHLH_family:-0.0893443448047;CDC5L:-0.0923157210833;IRF7:-0.0985079020335;ELK1,4_GABP{A,B1}:-0.102759607277;IRF1,2:-0.109505229978;STAT5{A,B}:-0.124650390254;HAND1,2:-0.127879568867;STAT1,3:-0.128693161566;MEF2{A,B,C,D}:-0.129234945458;TFAP2{A,C}:-0.153767727024;CREB1:-0.153912610476;GATA6:-0.168828627079;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.173326807474;FOX{D1,D2}:-0.195944106247;LEF1_TCF7_TCF7L1,2:-0.206525963942;SOX2:-0.229608538201;NKX2-3_NKX2-5:-0.23119663055;POU5F1:-0.233335350082;HOXA9_MEIS1:-0.275151362581;CEBPA,B_DDIT3:-0.277058578782;MYFfamily:-0.282097450766;ZFP161:-0.300285603762;POU3F1..4:-0.321909069667;LMO2:-0.321971662029;MTF1:-0.331647171311;HNF4A_NR2F1,2:-0.340229655958;RFX2..5_RFXANK_RFXAP:-0.376395879788;NKX6-1,2:-0.387886417583;ESRRA:-0.393355358975;ATF5_CREB3:-0.40139649974;NRF1:-0.406185483885;FOXA2:-0.411241500452;MED-1{core}:-0.41499711731;DMAP1_NCOR{1,2}_SMARC:-0.415551035774;FOXL1:-0.423703302085;SNAI1..3:-0.434597667821;ZNF143:-0.43533341172;ETS1,2:-0.444440566562;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.485704598824;NANOG:-0.501557126628;TGIF1:-0.51368321513;POU2F1..3:-0.52921139317;SPI1:-0.538791879908;POU1F1:-0.554066058716;ELF1,2,4:-0.560995284386;FOXP1:-0.562169914801;FOXD3:-0.576691363451;SOX5:-0.603875761611;FOXQ1:-0.604698402185;ZEB1:-0.605948806281;RBPJ:-0.631813430434;FOXO1,3,4:-0.656198450252;MYOD1:-0.659087755608;ATF4:-0.660086409524;PRRX1,2:-0.667506435648;NKX2-2,8:-0.680507880534;NR5A1,2:-0.68733187043;FOXN1:-0.708063299593;E2F1..5:-0.711303316675;YY1:-0.72760481009;SPIB:-0.737520663563;IKZF2:-0.747381391267;MYB:-0.757862441225;GFI1:-0.801795268205;RORA:-0.814335328293;FOX{F1,F2,J1}:-0.826769491073;TFDP1:-0.860154664913;NFY{A,B,C}:-0.887445973516;BPTF:-0.92144964124;OCT4_SOX2{dimer}:-0.935642334216;CUX2:-0.981050018383;VSX1,2:-1.02885121659;SOX{8,9,10}:-1.09714254267;T:-1.19458675834;BREu{core}:-1.21231500928;PDX1:-1.32873893517;HOX{A6,A7,B6,B7}:-1.34599925113;PITX1..3:-1.57958536787
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11762-123H7;search_select_hide=table117:FF:11762-123H7
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer metastasis, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12378
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005043
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12378 CAGE DRX008561 DRR009433
Accession ID Hg19

Library idBAMCTSS
CNhs12378 DRZ000858 DRZ002243
Accession ID Hg38

Library idBAMCTSS
CNhs12378 DRZ012208 DRZ013593
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.198
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.161
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0374
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.343
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0616
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0102
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0608
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0.114
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.419
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.162
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0608
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0505
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.414
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.114
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0608
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0608
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.162
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.934
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.753
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.881
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.817
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0671
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.279
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12378

Jaspar motifP-value
MA0002.20.816
MA0003.10.406
MA0004.10.135
MA0006.10.102
MA0007.10.241
MA0009.10.367
MA0014.10.967
MA0017.10.517
MA0018.20.0144
MA0019.10.138
MA0024.13.26936e-7
MA0025.10.18
MA0027.10.637
MA0028.10.0503
MA0029.10.697
MA0030.10.371
MA0031.10.13
MA0035.20.987
MA0038.10.05
MA0039.20.892
MA0040.10.38
MA0041.10.468
MA0042.10.54
MA0043.10.379
MA0046.10.335
MA0047.20.25
MA0048.10.149
MA0050.10.0174
MA0051.10.366
MA0052.10.0982
MA0055.10.124
MA0057.10.489
MA0058.10.161
MA0059.10.593
MA0060.19.57484e-9
MA0061.10.0786
MA0062.25.94609e-6
MA0065.20.797
MA0066.10.807
MA0067.10.162
MA0068.10.697
MA0069.10.378
MA0070.10.194
MA0071.10.986
MA0072.10.821
MA0073.10.935
MA0074.10.259
MA0076.10.00655
MA0077.10.183
MA0078.10.922
MA0079.20.8
MA0080.21.42119e-8
MA0081.19.10708e-5
MA0083.15.94541e-6
MA0084.10.871
MA0087.10.564
MA0088.10.198
MA0090.10.0014
MA0091.10.871
MA0092.10.22
MA0093.10.304
MA0099.23.68853e-7
MA0100.10.0607
MA0101.10.217
MA0102.20.9
MA0103.10.035
MA0104.20.044
MA0105.10.369
MA0106.10.188
MA0107.10.0177
MA0108.20.00646
MA0111.10.11
MA0112.20.0382
MA0113.10.652
MA0114.10.716
MA0115.10.212
MA0116.10.85
MA0117.10.854
MA0119.10.424
MA0122.10.569
MA0124.10.00782
MA0125.10.129
MA0131.10.105
MA0135.10.0531
MA0136.11.78917e-11
MA0137.20.885
MA0138.20.543
MA0139.10.696
MA0140.10.627
MA0141.10.43
MA0142.10.105
MA0143.10.967
MA0144.10.804
MA0145.10.161
MA0146.10.47
MA0147.10.0414
MA0148.10.648
MA0149.10.651
MA0150.10.0698
MA0152.10.03
MA0153.10.725
MA0154.10.417
MA0155.10.0476
MA0156.11.08428e-5
MA0157.10.142
MA0159.10.987
MA0160.10.23
MA0162.10.107
MA0163.10.622
MA0164.10.547
MA0258.10.331
MA0259.10.0814



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12378

Novel motifP-value
10.929
100.442
1000.922
1010.958
1020.167
1030.275
1040.943
1050.664
1060.13
1070.0756
1080.588
1090.777
110.613
1100.127
1110.0262
1120.828
1130.0212
1140.735
1150.0846
1160.34
1170.867
1180.264
1190.995
120.543
1200.531
1210.867
1220.289
1231.12643e-4
1240.173
1250.301
1260.868
1270.746
1280.0506
1290.534
130.569
1300.829
1310.0517
1320.446
1330.309
1340.971
1350.505
1360.923
1370.612
1380.951
1390.186
140.264
1400.21
1410.402
1420.317
1430.585
1440.271
1450.951
1460.814
1470.0827
1480.257
1490.0459
150.685
1500.189
1510.839
1520.0529
1530.703
1540.934
1550.134
1560.611
1570.657
1580.0176
1590.317
160.0203
1600.836
1610.792
1620.423
1630.02
1640.0261
1650.689
1660.162
1670.161
1680.684
1690.0718
170.537
180.454
190.312
20.152
200.47
210.974
220.2
230.0113
240.869
250.0462
260.492
270.806
280.758
290.208
30.462
300.286
310.568
329.42625e-16
330.692
340.305
350.643
360.0944
370.191
380.454
390.329
40.549
400.963
410.4
420.354
430.325
440.436
450.426
460.721
470.553
480.97
490.474
50.956
500.789
510.523
520.353
530.053
540.491
550.521
560.702
570.863
580.283
590.164
60.647
600.522
610.623
620.766
630.579
640.996
650.452
660.322
670.874
680.842
690.645
70.294
700.331
710.515
720.917
730.146
740.00927
750.637
760.575
770.00915
780.683
790.00352
80.313
800.443
810.713
820.421
830.565
840.654
850.0325
860.949
870.274
880.635
890.152
90.341
900.244
910.882
920.0401
930.971
940.929
950.91
960.916
970.105
980.0113
990.0659



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12378


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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