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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004913
|DRA_sample_Accession=CAGE@SAMD00004913
|accession_numbers=CAGE;DRX008046;DRR008918;DRZ000343;DRZ001728
|accession_numbers=CAGE;DRX008046;DRR008918;DRZ000343;DRZ001728;DRZ011693;DRZ013078
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
Line 54: Line 54:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;12242
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12242
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;12242
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12242
|name=Basophils, donor2
|name=Basophils, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=RUNX1..3:3.97760703373;RORA:3.4628167701;ETS1,2:3.30712987554;RFX2..5_RFXANK_RFXAP:2.92301840255;DMAP1_NCOR{1,2}_SMARC:2.90818587495;ATF5_CREB3:2.90711199811;NFIL3:2.87765810838;SPIB:2.83203274713;SPI1:2.78081616597;PAX2:2.77069239346;ELF1,2,4:2.74881902629;T:2.74499693266;NFKB1_REL_RELA:2.63121551136;FOSL2:2.62791633654;PAX3,7:2.61268054879;FOX{D1,D2}:2.58682868621;FOS_FOS{B,L1}_JUN{B,D}:2.56149697731;FOXO1,3,4:2.55383102465;CREB1:2.48077986173;BACH2:2.4328150556;NFE2:2.34397890407;NANOG{mouse}:2.24527192706;BPTF:2.14401570806;TGIF1:2.1275771042;ATF4:2.10073530273;HLF:1.96579468631;FOX{F1,F2,J1}:1.92741695219;HMGA1,2:1.88623475075;IRF1,2:1.86589748139;JUN:1.82973716414;RFX1:1.79685897257;CEBPA,B_DDIT3:1.76047283223;FOXN1:1.70885553483;RXRA_VDR{dimer}:1.70188453077;NFATC1..3:1.67507978173;HMX1:1.64162946204;EP300:1.5725142189;NFE2L2:1.50315455534;NKX2-1,4:1.42017563554;TBX4,5:1.41907664319;MAFB:1.39164334368;HIF1A:1.37511544577;SREBF1,2:1.32147111937;ATF2:1.30272495327;FOXP3:1.27296042272;NFE2L1:1.27199273931;IRF7:1.19132015375;ATF6:0.869728601963;SMAD1..7,9:0.833173246953;PAX6:0.766323665076;HBP1_HMGB_SSRP1_UBTF:0.688520523221;FOX{I1,J2}:0.674105299768;NANOG:0.633615687994;STAT2,4,6:0.56571348805;GATA6:0.537591352518;CDX1,2,4:0.484133538817;SOX2:0.442142427677;TLX2:0.435325105609;GLI1..3:0.435277709333;BREu{core}:0.405311789451;PDX1:0.402637582165;MYB:0.363790617218;RBPJ:0.316221319426;NR1H4:0.192439339438;DBP:0.159605122694;TFAP4:0.0944496571539;PAX8:-0.02193240975;HSF1,2:-0.0248234520748;PPARG:-0.0424838739345;POU2F1..3:-0.0543309020149;MYFfamily:-0.0609869132655;AHR_ARNT_ARNT2:-0.0929503799164;CRX:-0.0946515474497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.117274238384;GCM1,2:-0.129616550814;FOXP1:-0.129929068165;HOXA9_MEIS1:-0.147487509037;XBP1:-0.149275988773;SOX5:-0.16995249316;POU5F1:-0.184639960122;FOXA2:-0.197435307379;ALX4:-0.210996725045;NHLH1,2:-0.235827893741;TFDP1:-0.276897381532;MEF2{A,B,C,D}:-0.281796191046;EN1,2:-0.301401750861;SRF:-0.312793640869;ESRRA:-0.323103322124;GATA4:-0.336989809159;HOX{A5,B5}:-0.353322194792;TFCP2:-0.358453134572;SPZ1:-0.370698871103;TAL1_TCF{3,4,12}:-0.385269755524;ZNF238:-0.389513319444;NFIX:-0.42144628424;ELK1,4_GABP{A,B1}:-0.436862871881;HES1:-0.443840794305;PITX1..3:-0.449769117693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.451851033468;PAX4:-0.457770179364;ZNF384:-0.462339569371;VSX1,2:-0.477944383983;FOXD3:-0.483832333957;NKX2-2,8:-0.504534934009;LEF1_TCF7_TCF7L1,2:-0.534078361421;NR5A1,2:-0.5618605204;EGR1..3:-0.609164864636;TBP:-0.613705162611;PBX1:-0.615677276551;OCT4_SOX2{dimer}:-0.639358148618;NKX3-1:-0.643920120401;MZF1:-0.659098880316;MED-1{core}:-0.670398703154;MTF1:-0.673056360455;ZBTB16:-0.685454934011;E2F1..5:-0.691748781981;NFY{A,B,C}:-0.700032617746;MTE{core}:-0.701845033337;STAT5{A,B}:-0.705812387791;PRRX1,2:-0.746208408406;IKZF2:-0.762391538574;PATZ1:-0.785575448866;MYOD1:-0.796007875953;STAT1,3:-0.813742852901;ZEB1:-0.819660643558;HNF1A:-0.819691318949;ZFP161:-0.821175871272;ALX1:-0.851562291179;AIRE:-0.852951366065;HNF4A_NR2F1,2:-0.910221347393;PAX5:-0.925388405525;FOXM1:-0.965159302569;FOXL1:-0.969139353703;SOX{8,9,10}:-0.973269509205;SNAI1..3:-1.00143646534;ZNF148:-1.0253422488;REST:-1.02735164014;CUX2:-1.04566571645;NR3C1:-1.08391840561;NKX2-3_NKX2-5:-1.13533668025;ESR1:-1.16588680793;NRF1:-1.22291127532;TFAP2B:-1.23640456107;PRDM1:-1.23930730884;YY1:-1.27174092146;RXR{A,B,G}:-1.27291516897;ZBTB6:-1.29418429596;ZNF423:-1.3121499015;HOX{A6,A7,B6,B7}:-1.35211499161;MAZ:-1.35405365546;SP1:-1.37363301218;FOXQ1:-1.37529695815;ADNP_IRX_SIX_ZHX:-1.41878850542;MYBL2:-1.4500365683;GFI1B:-1.46092135039;bHLH_family:-1.49790273349;AR:-1.50385375368;TFAP2{A,C}:-1.53702204076;GTF2I:-1.53847011378;LHX3,4:-1.58068416768;TLX1..3_NFIC{dimer}:-1.58292988059;POU1F1:-1.59891795707;TP53:-1.62419470981;LMO2:-1.63939858154;NKX6-1,2:-1.65847110821;GFI1:-1.6916632042;CDC5L:-1.72415511001;HIC1:-1.73330654049;RREB1:-1.7736583286;GZF1:-1.79204303878;GTF2A1,2:-1.83588372334;NR6A1:-1.87394899808;TEAD1:-1.89406272716;ZIC1..3:-1.91707413153;TEF:-1.94206202323;ZNF143:-1.95456889078;EVI1:-1.97358671486;PAX1,9:-2.02412330952;TOPORS:-2.12541693771;HAND1,2:-2.13882383303;SOX17:-2.14423977584;IKZF1:-2.16016246313;KLF4:-2.16165185734;EBF1:-2.20800723275;XCPE1{core}:-2.21926407987;HOX{A4,D4}:-2.27682069292;ARID5B:-2.27971747573;UFEwm:-2.61758216366;NKX3-2:-2.63423009154;POU6F1:-2.79003022373;ONECUT1,2:-3.04223271514;POU3F1..4:-3.09680935287
|top_motifs=RUNX1..3:3.97760703373;RORA:3.4628167701;ETS1,2:3.30712987554;RFX2..5_RFXANK_RFXAP:2.92301840255;DMAP1_NCOR{1,2}_SMARC:2.90818587495;ATF5_CREB3:2.90711199811;NFIL3:2.87765810838;SPIB:2.83203274713;SPI1:2.78081616597;PAX2:2.77069239346;ELF1,2,4:2.74881902629;T:2.74499693266;NFKB1_REL_RELA:2.63121551136;FOSL2:2.62791633654;PAX3,7:2.61268054879;FOX{D1,D2}:2.58682868621;FOS_FOS{B,L1}_JUN{B,D}:2.56149697731;FOXO1,3,4:2.55383102465;CREB1:2.48077986173;BACH2:2.4328150556;NFE2:2.34397890407;NANOG{mouse}:2.24527192706;BPTF:2.14401570806;TGIF1:2.1275771042;ATF4:2.10073530273;HLF:1.96579468631;FOX{F1,F2,J1}:1.92741695219;HMGA1,2:1.88623475075;IRF1,2:1.86589748139;JUN:1.82973716414;RFX1:1.79685897257;CEBPA,B_DDIT3:1.76047283223;FOXN1:1.70885553483;RXRA_VDR{dimer}:1.70188453077;NFATC1..3:1.67507978173;HMX1:1.64162946204;EP300:1.5725142189;NFE2L2:1.50315455534;NKX2-1,4:1.42017563554;TBX4,5:1.41907664319;MAFB:1.39164334368;HIF1A:1.37511544577;SREBF1,2:1.32147111937;ATF2:1.30272495327;FOXP3:1.27296042272;NFE2L1:1.27199273931;IRF7:1.19132015375;ATF6:0.869728601963;SMAD1..7,9:0.833173246953;PAX6:0.766323665076;HBP1_HMGB_SSRP1_UBTF:0.688520523221;FOX{I1,J2}:0.674105299768;NANOG:0.633615687994;STAT2,4,6:0.56571348805;GATA6:0.537591352518;CDX1,2,4:0.484133538817;SOX2:0.442142427677;TLX2:0.435325105609;GLI1..3:0.435277709333;BREu{core}:0.405311789451;PDX1:0.402637582165;MYB:0.363790617218;RBPJ:0.316221319426;NR1H4:0.192439339438;DBP:0.159605122694;TFAP4:0.0944496571539;PAX8:-0.02193240975;HSF1,2:-0.0248234520748;PPARG:-0.0424838739345;POU2F1..3:-0.0543309020149;MYFfamily:-0.0609869132655;AHR_ARNT_ARNT2:-0.0929503799164;CRX:-0.0946515474497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.117274238384;GCM1,2:-0.129616550814;FOXP1:-0.129929068165;HOXA9_MEIS1:-0.147487509037;XBP1:-0.149275988773;SOX5:-0.16995249316;POU5F1:-0.184639960122;FOXA2:-0.197435307379;ALX4:-0.210996725045;NHLH1,2:-0.235827893741;TFDP1:-0.276897381532;MEF2{A,B,C,D}:-0.281796191046;EN1,2:-0.301401750861;SRF:-0.312793640869;ESRRA:-0.323103322124;GATA4:-0.336989809159;HOX{A5,B5}:-0.353322194792;TFCP2:-0.358453134572;SPZ1:-0.370698871103;TAL1_TCF{3,4,12}:-0.385269755524;ZNF238:-0.389513319444;NFIX:-0.42144628424;ELK1,4_GABP{A,B1}:-0.436862871881;HES1:-0.443840794305;PITX1..3:-0.449769117693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.451851033468;PAX4:-0.457770179364;ZNF384:-0.462339569371;VSX1,2:-0.477944383983;FOXD3:-0.483832333957;NKX2-2,8:-0.504534934009;LEF1_TCF7_TCF7L1,2:-0.534078361421;NR5A1,2:-0.5618605204;EGR1..3:-0.609164864636;TBP:-0.613705162611;PBX1:-0.615677276551;OCT4_SOX2{dimer}:-0.639358148618;NKX3-1:-0.643920120401;MZF1:-0.659098880316;MED-1{core}:-0.670398703154;MTF1:-0.673056360455;ZBTB16:-0.685454934011;E2F1..5:-0.691748781981;NFY{A,B,C}:-0.700032617746;MTE{core}:-0.701845033337;STAT5{A,B}:-0.705812387791;PRRX1,2:-0.746208408406;IKZF2:-0.762391538574;PATZ1:-0.785575448866;MYOD1:-0.796007875953;STAT1,3:-0.813742852901;ZEB1:-0.819660643558;HNF1A:-0.819691318949;ZFP161:-0.821175871272;ALX1:-0.851562291179;AIRE:-0.852951366065;HNF4A_NR2F1,2:-0.910221347393;PAX5:-0.925388405525;FOXM1:-0.965159302569;FOXL1:-0.969139353703;SOX{8,9,10}:-0.973269509205;SNAI1..3:-1.00143646534;ZNF148:-1.0253422488;REST:-1.02735164014;CUX2:-1.04566571645;NR3C1:-1.08391840561;NKX2-3_NKX2-5:-1.13533668025;ESR1:-1.16588680793;NRF1:-1.22291127532;TFAP2B:-1.23640456107;PRDM1:-1.23930730884;YY1:-1.27174092146;RXR{A,B,G}:-1.27291516897;ZBTB6:-1.29418429596;ZNF423:-1.3121499015;HOX{A6,A7,B6,B7}:-1.35211499161;MAZ:-1.35405365546;SP1:-1.37363301218;FOXQ1:-1.37529695815;ADNP_IRX_SIX_ZHX:-1.41878850542;MYBL2:-1.4500365683;GFI1B:-1.46092135039;bHLH_family:-1.49790273349;AR:-1.50385375368;TFAP2{A,C}:-1.53702204076;GTF2I:-1.53847011378;LHX3,4:-1.58068416768;TLX1..3_NFIC{dimer}:-1.58292988059;POU1F1:-1.59891795707;TP53:-1.62419470981;LMO2:-1.63939858154;NKX6-1,2:-1.65847110821;GFI1:-1.6916632042;CDC5L:-1.72415511001;HIC1:-1.73330654049;RREB1:-1.7736583286;GZF1:-1.79204303878;GTF2A1,2:-1.83588372334;NR6A1:-1.87394899808;TEAD1:-1.89406272716;ZIC1..3:-1.91707413153;TEF:-1.94206202323;ZNF143:-1.95456889078;EVI1:-1.97358671486;PAX1,9:-2.02412330952;TOPORS:-2.12541693771;HAND1,2:-2.13882383303;SOX17:-2.14423977584;IKZF1:-2.16016246313;KLF4:-2.16165185734;EBF1:-2.20800723275;XCPE1{core}:-2.21926407987;HOX{A4,D4}:-2.27682069292;ARID5B:-2.27971747573;UFEwm:-2.61758216366;NKX3-2:-2.63423009154;POU6F1:-2.79003022373;ONECUT1,2:-3.04223271514;POU3F1..4:-3.09680935287
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12242-129H1;search_select_hide=table117:FF:12242-129H1
}}
}}

Latest revision as of 18:36, 4 June 2020

Name:Basophils, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12563
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typebasophil
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number3H100-93-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004913
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12563 CAGE DRX008046 DRR008918
Accession ID Hg19

Library idBAMCTSS
CNhs12563 DRZ000343 DRZ001728
Accession ID Hg38

Library idBAMCTSS
CNhs12563 DRZ011693 DRZ013078
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
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Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.141
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.141
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.188
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.263
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.247
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.409
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.141
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.271
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.602
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.247
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.141
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.686
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.559
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.141
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.247
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.432
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.141
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.141
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.333
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.182
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.61
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.404
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.264
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.247
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.247
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0849
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.724
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.141
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.466
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.519
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.524
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.333
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.27
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.701
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.582
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.404
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.519
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.588
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.519
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.141
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.247
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.141
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.741
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.333
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.141
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.519
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.404
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.777
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.247
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.61
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12563

Jaspar motifP-value
MA0002.21.38821e-14
MA0003.10.944
MA0004.10.649
MA0006.10.498
MA0007.10.342
MA0009.10.136
MA0014.10.989
MA0017.10.493
MA0018.20.00122
MA0019.10.987
MA0024.10.0799
MA0025.11.62626e-4
MA0027.10.869
MA0028.10.698
MA0029.10.418
MA0030.10.034
MA0031.10.0132
MA0035.20.862
MA0038.10.557
MA0039.20.777
MA0040.10.188
MA0041.10.746
MA0042.10.648
MA0043.15.75609e-8
MA0046.10.138
MA0047.20.332
MA0048.10.572
MA0050.11.02412e-6
MA0051.10.0117
MA0052.10.271
MA0055.10.188
MA0057.10.253
MA0058.10.438
MA0059.10.64
MA0060.15.64288e-4
MA0061.19.87117e-17
MA0062.21.22739e-6
MA0065.20.196
MA0066.10.0293
MA0067.16.92611e-6
MA0068.10.0922
MA0069.10.525
MA0070.10.0491
MA0071.10.46
MA0072.10.334
MA0073.10.427
MA0074.10.402
MA0076.10.439
MA0077.10.174
MA0078.10.675
MA0079.20.382
MA0080.22.18717e-14
MA0081.11.5226e-4
MA0083.10.527
MA0084.10.353
MA0087.10.836
MA0088.10.415
MA0090.10.0258
MA0091.10.922
MA0092.10.612
MA0093.10.719
MA0099.26.13769e-31
MA0100.10.708
MA0101.16.31085e-12
MA0102.24.12771e-7
MA0103.10.0689
MA0104.20.367
MA0105.11.46812e-17
MA0106.10.207
MA0107.12.43293e-14
MA0108.20.0235
MA0111.10.524
MA0112.20.0258
MA0113.10.813
MA0114.10.736
MA0115.10.18
MA0116.12.34314e-4
MA0117.10.0111
MA0119.10.707
MA0122.10.884
MA0124.10.873
MA0125.10.103
MA0131.10.932
MA0135.10.814
MA0136.11.99387e-20
MA0137.20.771
MA0138.20.166
MA0139.10.943
MA0140.10.841
MA0141.10.635
MA0142.10.888
MA0143.10.819
MA0144.10.326
MA0145.10.659
MA0146.10.786
MA0147.10.481
MA0148.10.245
MA0149.10.562
MA0150.11.26398e-13
MA0152.10.145
MA0153.10.0379
MA0154.10.00331
MA0155.10.605
MA0156.19.32154e-19
MA0157.10.0271
MA0159.10.187
MA0160.10.148
MA0162.10.642
MA0163.12.2898e-5
MA0164.11
MA0258.10.0849
MA0259.10.971



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12563

Novel motifP-value
10.346
100.0191
1000.495
1010.603
1020.824
1030.342
1040.421
1050.141
1060.0101
1070.962
1080.522
1090.352
110.345
1100.605
1110.265
1120.525
1130.124
1140.117
1150.16
1160.461
1170.0264
1180.32
1190.861
120.276
1200.943
1210.564
1220.48
1230.0977
1240.508
1250.541
1260.135
1270.627
1280.189
1290.998
130.293
1300.381
1310.855
1320.0317
1330.358
1340.976
1350.337
1360.681
1379.61216e-4
1380.316
1390.0534
140.3
1400.497
1410.466
1420.123
1430.00149
1440.683
1450.546
1460.854
1470.231
1480.111
1490.764
150.139
1500.652
1510.147
1520.932
1530.688
1540.4
1550.379
1560.536
1570.657
1580.0786
1590.0321
160.909
1600.717
1610.873
1620.0695
1630.509
1640.175
1650.32
1660.797
1670.337
1680.175
1690.466
170.602
180.271
190.931
20.574
200.484
210.899
220.674
230.22
240.547
250.142
260.3
270.946
280.328
290.127
30.268
300.305
310.884
320.0726
330.424
340.825
350.12
360.0825
370.217
380.696
390.847
40.92
400.466
410.00334
420.283
430.0565
440.653
450.997
460.349
470.722
480.674
490.112
50.188
500.663
510.458
520.621
530.369
540.55
550.8
560.918
570.951
580.0955
590.725
60.936
600.119
610.332
620.0664
630.959
640.512
650.556
660.263
670.877
680.344
690.707
70.194
700.15
710.0466
720.302
730.378
740.137
750.0761
760.15
770.52
780.661
790.781
80.927
800.00511
810.43
820.373
830.0411
840.498
850.0837
860.0226
870.511
880.811
890.587
90.402
900.0759
910.483
920.381
930.177
940.0796
950.132
960.387
970.96
980.389
993.68457e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12563


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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