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|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005690
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005690
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|HumanCAGEScanFiles=NCig10065;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.pairs.bed.gz!NCig10129;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007885;DRR008757;DRZ000182;DRZ001567
|accession_numbers=CAGE;DRX007885;DRR008757;DRZ000182;DRZ001567;DRZ011532;DRZ012917
|accession_numbers_RNASeq=RNA-Seq;DRX057118;DRR062877;DRZ007953
|accession_numbers_RNASeq=RNA-Seq;DRX057118;DRR062877;DRZ007953
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0004755,UBERON:0002204,UBERON:0001434
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0004755,UBERON:0002204,UBERON:0001434
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10410
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10410
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10410
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10410
|name=extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS
|name=extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS
|namespace=FANTOM5
|namespace=FANTOM5
Line 65: Line 65:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 104: Line 104:
|top_motifs=ONECUT1,2:2.80650326457;VSX1,2:2.03809659805;RORA:1.84989885395;NKX6-1,2:1.60990352387;SREBF1,2:1.58100135205;GATA4:1.51752165667;PAX4:1.48298420948;PAX8:1.37438939458;bHLH_family:1.35334578099;YY1:1.28959092358;EGR1..3:1.22660705012;ATF2:1.19517187566;HOX{A5,B5}:1.18577327131;SOX17:1.17747365904;AIRE:1.1724009245;CRX:1.12385765279;STAT1,3:1.10413157469;FOXN1:1.08509211841;FOXQ1:1.0189048147;NRF1:0.967927620957;TEF:0.937939067239;RREB1:0.935079061692;EVI1:0.92077056794;ATF4:0.902040241137;NANOG:0.899841882325;STAT5{A,B}:0.883450856431;TOPORS:0.876920324572;POU1F1:0.874302498575;ZNF143:0.85390929594;HIF1A:0.826099383512;NFIL3:0.810050084497;MZF1:0.806745354389;FOX{F1,F2,J1}:0.786269276416;LMO2:0.767987532211;CDX1,2,4:0.685018379215;RFX1:0.62734971104;JUN:0.571888973899;CUX2:0.571312239313;ADNP_IRX_SIX_ZHX:0.560832832364;ELK1,4_GABP{A,B1}:0.551716042906;HOX{A4,D4}:0.547705264644;TAL1_TCF{3,4,12}:0.546636043023;BREu{core}:0.540776599074;PATZ1:0.540332747701;HBP1_HMGB_SSRP1_UBTF:0.509795414911;MYB:0.485870125552;TLX2:0.480377500757;RFX2..5_RFXANK_RFXAP:0.4753743552;FOXD3:0.463764693731;ESR1:0.445404797094;GZF1:0.428862399102;AHR_ARNT_ARNT2:0.422042483316;ZNF384:0.417345974173;GATA6:0.41208894663;PRRX1,2:0.410149590092;NKX2-1,4:0.396920490296;SOX{8,9,10}:0.394326621353;TFAP2B:0.373491916358;FOXA2:0.370865235386;ZBTB6:0.367880002642;REST:0.352997874707;GTF2I:0.322031834104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.3102354529;PAX1,9:0.302877896498;FOXP1:0.284516347135;GTF2A1,2:0.283203839373;RBPJ:0.259340868553;PITX1..3:0.23675044312;ZFP161:0.232819477682;GFI1:0.211192659662;SOX2:0.208940751739;ALX1:0.197094292868;MEF2{A,B,C,D}:0.191785804411;DMAP1_NCOR{1,2}_SMARC:0.184335925822;TFDP1:0.183391782254;NR5A1,2:0.182682947168;CEBPA,B_DDIT3:0.16629929968;ATF5_CREB3:0.152074204826;EP300:0.131963975723;CREB1:0.130353571668;FOX{D1,D2}:0.123541397607;LEF1_TCF7_TCF7L1,2:0.112575568123;HSF1,2:0.111786922473;SP1:0.103319002543;NR6A1:0.102176091445;PAX2:0.0744446618951;LHX3,4:0.0696794522246;HNF4A_NR2F1,2:0.0676492088504;HAND1,2:0.0552103053577;GFI1B:0.027884103909;FOXP3:0.0194682239709;HOXA9_MEIS1:0.00603684771303;MAZ:0.00330492352286;E2F1..5:-0.0121272727208;ATF6:-0.0150369276617;NKX2-2,8:-0.0327043423946;DBP:-0.0350327636125;TGIF1:-0.0527349363668;HLF:-0.0533448688157;TEAD1:-0.0855379162993;MED-1{core}:-0.0905989816386;PRDM1:-0.102612401693;ZBTB16:-0.103261089436;NFATC1..3:-0.123340982897;T:-0.131145432701;SOX5:-0.138462883795;ARID5B:-0.140557089069;SPZ1:-0.147921167578;TP53:-0.162564285399;NKX2-3_NKX2-5:-0.184712330797;NANOG{mouse}:-0.198491775071;NFY{A,B,C}:-0.200208536351;ZNF423:-0.216543136856;NKX3-2:-0.23041066355;ZNF148:-0.238305137998;FOS_FOS{B,L1}_JUN{B,D}:-0.240858323522;ELF1,2,4:-0.260398141372;MYOD1:-0.261680731267;IKZF1:-0.263371915387;NKX3-1:-0.27262303517;FOXM1:-0.273030591194;PPARG:-0.280853485164;OCT4_SOX2{dimer}:-0.283843588233;HNF1A:-0.319568924381;POU2F1..3:-0.321080244586;HMGA1,2:-0.332705960824;HIC1:-0.332830352791;TFAP4:-0.335402864872;SNAI1..3:-0.344047825589;TBX4,5:-0.347174107675;NR3C1:-0.361157110523;UFEwm:-0.362175804931;BACH2:-0.367577995918;MYBL2:-0.379954751684;EN1,2:-0.386775255307;SPI1:-0.391485622171;ZIC1..3:-0.411975620089;IKZF2:-0.41242750308;ZEB1:-0.41794950545;NFKB1_REL_RELA:-0.42313671439;MYFfamily:-0.440523439592;EBF1:-0.441446164998;SPIB:-0.467493365544;FOSL2:-0.482257984582;RUNX1..3:-0.491487415626;PAX5:-0.493418545585;MTF1:-0.51090545315;ZNF238:-0.524316436292;HMX1:-0.526036740274;KLF4:-0.536529022619;PAX3,7:-0.541961058427;NFE2:-0.559127000691;PBX1:-0.563894452679;IRF7:-0.57943999923;FOXL1:-0.596159061321;SRF:-0.630247760635;FOX{I1,J2}:-0.63059139382;CDC5L:-0.638083918803;BPTF:-0.644448228045;NR1H4:-0.700581967357;NHLH1,2:-0.706164447884;STAT2,4,6:-0.724806261529;ESRRA:-0.743240657305;TLX1..3_NFIC{dimer}:-0.7687107389;XCPE1{core}:-0.785243233115;GCM1,2:-0.793010266623;NFIX:-0.811658466452;POU6F1:-0.820010613508;TFCP2:-0.866164492062;XBP1:-0.881806711284;HOX{A6,A7,B6,B7}:-0.928587394076;TFAP2{A,C}:-0.935469686738;POU3F1..4:-0.939153456374;RXR{A,B,G}:-0.957742216546;ETS1,2:-0.967835541381;IRF1,2:-0.973372226602;MTE{core}:-0.989499021612;NFE2L2:-1.02234299004;AR:-1.03555222806;POU5F1:-1.03594277858;PAX6:-1.09464294228;FOXO1,3,4:-1.11582401486;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16537604193;NFE2L1:-1.17517212606;ALX4:-1.20011151886;SMAD1..7,9:-1.33191905354;GLI1..3:-1.36891965131;PDX1:-1.41622340109;HES1:-1.42546211973;MAFB:-1.58491836973;TBP:-1.70612212965;RXRA_VDR{dimer}:-1.87743329322
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|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10410-106B5;search_select_hide=table117:FF:10410-106B5
}}
}}

Latest revision as of 13:59, 3 June 2020

Name:extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS
Species:Human (Homo sapiens)
Library ID:CNhs10728
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stage77 year old adult
sexfemale
age77
cell typechondroblast
cell lineH-EMC-SS
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005690
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10728 CAGE DRX007885 DRR008757
Accession ID Hg19

Library idBAMCTSS
CNhs10728 DRZ000182 DRZ001567
Accession ID Hg38

Library idBAMCTSS
CNhs10728 DRZ011532 DRZ012917
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10065downloaddownloaddownloaddownload
NCig10129downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005690
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10061 RNA-Seq DRX057118 DRR062877
Accession ID Hg19

Library idBAMCTSS
RDhi10061 DRZ007953


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0474
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.147
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.132
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.103
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.235
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.415
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0231
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.218
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0.887
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10728

Jaspar motifP-value
MA0002.20.00377
MA0003.10.0637
MA0004.10.0501
MA0006.10.239
MA0007.10.192
MA0009.10.0275
MA0014.10.458
MA0017.10.00498
MA0018.20.0079
MA0019.10.241
MA0024.10.101
MA0025.10.096
MA0027.10.294
MA0028.10.00758
MA0029.10.464
MA0030.10.562
MA0031.10.482
MA0035.20.859
MA0038.10.324
MA0039.20.396
MA0040.10.191
MA0041.10.925
MA0042.10.772
MA0043.13.00391e-7
MA0046.10.143
MA0047.20.154
MA0048.10.0661
MA0050.12.41484e-8
MA0051.13.07598e-6
MA0052.10.341
MA0055.10.0152
MA0057.10.213
MA0058.10.026
MA0059.10.882
MA0060.10.73
MA0061.10.00314
MA0062.20.0619
MA0065.20.0113
MA0066.10.734
MA0067.10.763
MA0068.10.872
MA0069.10.636
MA0070.10.457
MA0071.10.576
MA0072.10.136
MA0073.10.306
MA0074.10.0915
MA0076.10.00329
MA0077.10.563
MA0078.10.497
MA0079.20.187
MA0080.21.3821e-12
MA0081.10.0576
MA0083.10.0121
MA0084.10.449
MA0087.10.472
MA0088.10.623
MA0090.10.64
MA0091.10.318
MA0092.10.0322
MA0093.10.0244
MA0099.21.75606e-7
MA0100.10.265
MA0101.10.108
MA0102.20.0119
MA0103.10.407
MA0104.20.145
MA0105.10.0178
MA0106.10.471
MA0107.10.0294
MA0108.23.54889e-6
MA0111.10.866
MA0112.22.40834e-5
MA0113.10.0719
MA0114.10.191
MA0115.10.067
MA0116.10.161
MA0117.10.789
MA0119.10.169
MA0122.10.957
MA0124.10.238
MA0125.10.831
MA0131.10.0435
MA0135.10.286
MA0136.12.14388e-8
MA0137.20.514
MA0138.20.744
MA0139.10.461
MA0140.10.806
MA0141.10.0532
MA0142.10.498
MA0143.10.864
MA0144.10.0161
MA0145.10.0895
MA0146.10.82
MA0147.10.211
MA0148.10.498
MA0149.10.627
MA0150.10.00495
MA0152.10.597
MA0153.10.505
MA0154.10.00623
MA0155.10.43
MA0156.12.03316e-5
MA0157.10.687
MA0159.10.101
MA0160.10.192
MA0162.10.0136
MA0163.10.0678
MA0164.10.858
MA0258.10.0313
MA0259.10.0963



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10728

Novel motifP-value
10.623
100.296
1000.92
1010.593
1020.722
1030.0231
1040.741
1050.864
1060.00123
1070.00518
1080.19
1090.305
110.124
1100.869
1110.41
1120.0583
1130.263
1140.339
1150.522
1160.667
1170.708
1180.348
1190.341
120.323
1200.907
1210.181
1220.222
1230.104
1240.917
1250.341
1260.322
1270.0655
1280.056
1290.828
130.542
1300.373
1310.99
1320.851
1330.961
1340.871
1350.176
1360.785
1370.27
1380.909
1390.997
140.451
1402.76837e-6
1410.968
1420.897
1430.00623
1440.887
1450.196
1460.501
1470.802
1480.00224
1490.265
150.511
1500.354
1510.803
1520.14
1530.648
1540.693
1550.43
1560.534
1570.0555
1580.754
1590.878
160.3
1600.0415
1610.439
1620.484
1630.214
1640.94
1650.246
1660.373
1670.438
1680.0959
1690.0773
170.131
180.212
190.143
20.226
200.491
210.394
220.32
230.00861
240.912
250.331
260.793
270.13
280.796
290.396
30.44
300.414
310.989
320.00411
330.542
340.421
350.644
360.116
370.381
380.378
390.117
40.771
400.0364
410.0174
420.719
430.149
440.02
450.33
460.273
470.698
480.404
490.433
50.538
500.82
510.488
520.17
530.908
540.648
550.689
560.828
570.809
580.0792
590.0168
60.256
600.0333
610.95
620.0388
630.149
640.446
650.107
660.781
670.707
680.428
690.594
70.368
700.369
710.175
720.347
730.0912
740.466
750.822
760.483
770.0893
780.319
790.0173
80.319
800.967
810.309
820.0501
830.105
840.847
850.19
860.886
870.56
880.416
890.186
90.0398
900.938
910.0141
920.375
930.0806
940.301
950.367
960.259
970.981
980.612
990.584



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10728


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
3371 (chondrosarcoma)
4549 (extraosseous chondrosarcoma)
5861 (myxoid chondrosarcoma)
6496 (extraskeletal myxoid chondrosarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0004755 (skeletal tissue)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0101574 (chondrosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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