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{{f5samples
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013678
|DRA_sample_Accession=RNA-Seq@SAMD00013678
|accession_numbers=CAGE;DRX008069;DRR008941;DRZ000366;DRZ001751!RNA-Seq;DRX012350;DRR013798;DRZ002999;
|accession_numbers=CAGE;DRX008069;DRR008941;DRZ000366;DRZ001751;DRZ011716;DRZ013101!RNA-Seq;DRX012350;DRR013798;DRZ002999;
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
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|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12182
|library_id=CNhs12182!RDhi10017
|library_id_phase_based=2:CNhs12182
|library_id_phase_based=2:CNhs12182
|microRNAs=
|microRNAs=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=T:3.07914668181;PDX1:2.28471045781;RUNX1..3:2.22083230066;ELF1,2,4:2.1668742045;ETS1,2:2.06108640306;PAX3,7:1.7416891684;FOX{D1,D2}:1.55144217663;SPI1:1.52022903124;NFIX:1.45505331268;RORA:1.45426751461;CRX:1.39811326496;FOXO1,3,4:1.39777776514;CDX1,2,4:1.35879442314;DMAP1_NCOR{1,2}_SMARC:1.35493372406;IRF1,2:1.28389890854;SPIB:1.22075081672;STAT1,3:1.20387386493;FOX{F1,F2,J1}:1.20011753784;GATA6:1.1503194746;LEF1_TCF7_TCF7L1,2:1.11064224979;BPTF:1.10682743318;TLX2:1.04239118226;PBX1:1.02036079442;HMX1:0.978893556167;TGIF1:0.950451015163;FOXD3:0.93947161944;SPZ1:0.924262085126;IRF7:0.847682536545;RBPJ:0.847195656491;POU1F1:0.833444168785;IKZF2:0.806035912766;NKX2-1,4:0.766478538886;RFX2..5_RFXANK_RFXAP:0.748344765726;PAX6:0.741158415467;RXRA_VDR{dimer}:0.735330048922;NKX6-1,2:0.722006634715;BREu{core}:0.692227356658;MYOD1:0.650060619528;FOXQ1:0.627045560353;ELK1,4_GABP{A,B1}:0.615675162433;FOXN1:0.592270980685;VSX1,2:0.579889181828;YY1:0.553762267858;NFIL3:0.503188260514;NFATC1..3:0.460578801419;ZEB1:0.452412870541;ZBTB16:0.439313982122;ATF5_CREB3:0.396003042475;ADNP_IRX_SIX_ZHX:0.39446739086;SOX5:0.392012686826;FOXA2:0.37759904783;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373598076363;TBX4,5:0.318308052773;NFKB1_REL_RELA:0.314355343481;NKX2-2,8:0.301075377096;SNAI1..3:0.292474271515;CUX2:0.272387371076;PRRX1,2:0.271424039919;PAX4:0.25582232842;NR1H4:0.248535777123;CEBPA,B_DDIT3:0.221345600462;HES1:0.191055037852;NANOG{mouse}:0.166488734549;PAX2:0.165911422981;FOXP3:0.165332300994;FOX{I1,J2}:0.162338925562;ALX1:0.162104744455;POU5F1:0.15788646019;TAL1_TCF{3,4,12}:0.122369886735;STAT2,4,6:0.113991039475;SOX2:0.103188929664;CREB1:0.0852625586102;LMO2:0.0509632862859;OCT4_SOX2{dimer}:0.0362956179025;AHR_ARNT_ARNT2:0.0308755454602;SREBF1,2:0.0040461758473;ARID5B:0.00135231065989;MYB:-0.0193576424345;ATF2:-0.0209590372004;STAT5{A,B}:-0.0338614889445;NR3C1:-0.0510722992528;FOXP1:-0.0733995604976;MYFfamily:-0.145959289279;NKX2-3_NKX2-5:-0.180042941289;NR5A1,2:-0.190217362724;NANOG:-0.191365027353;HAND1,2:-0.195481372432;SMAD1..7,9:-0.199687961304;EP300:-0.203077118737;HNF4A_NR2F1,2:-0.207236382236;POU2F1..3:-0.210522478279;NRF1:-0.220109284579;PITX1..3:-0.227060015954;HOX{A6,A7,B6,B7}:-0.245586751648;HNF1A:-0.250290616476;ZNF238:-0.250470245323;FOSL2:-0.254187235521;E2F1..5:-0.268404123571;ZNF143:-0.273656882781;ZNF148:-0.28253422647;AR:-0.290415375657;GLI1..3:-0.293208193973;JUN:-0.298395942003;DBP:-0.302347296036;ATF6:-0.318785061463;HLF:-0.329703431321;MTF1:-0.333231399871;NFE2L1:-0.35648280863;GCM1,2:-0.357107656261;ATF4:-0.370251631833;GATA4:-0.378179042179;BACH2:-0.378762932964;MAFB:-0.383028569622;NKX3-1:-0.388138250374;HBP1_HMGB_SSRP1_UBTF:-0.405361503657;ESR1:-0.405901000715;NHLH1,2:-0.435745021565;TFAP4:-0.441333015454;HMGA1,2:-0.466409290433;FOS_FOS{B,L1}_JUN{B,D}:-0.468121966207;NFE2L2:-0.475394147896;GFI1:-0.501590483917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.521885450681;RFX1:-0.547749317051;SRF:-0.548876825863;NFY{A,B,C}:-0.549042462665;NFE2:-0.550705534725;RREB1:-0.570033347265;ZNF384:-0.611882509358;PAX8:-0.618440268493;TP53:-0.646786362441;MZF1:-0.648834545966;CDC5L:-0.667776574742;AIRE:-0.69130593759;FOXM1:-0.711038771767;MEF2{A,B,C,D}:-0.712200190613;ALX4:-0.728701771532;SOX{8,9,10}:-0.741829076582;REST:-0.747139746921;EN1,2:-0.798631972524;TFCP2:-0.823939544727;HOX{A5,B5}:-0.826753024992;KLF4:-0.846593925363;EBF1:-0.877236734824;LHX3,4:-0.897507493159;ZNF423:-0.901827728325;PRDM1:-0.9128483188;ZBTB6:-0.91755638621;EVI1:-0.926091972398;PAX5:-0.941498364198;HIF1A:-0.949380481646;GFI1B:-0.957512160805;ZFP161:-0.958694373519;EGR1..3:-0.979495858545;MTE{core}:-0.98260245819;MED-1{core}:-0.997416033221;PPARG:-1.03927520546;ONECUT1,2:-1.04995243991;NKX3-2:-1.11445051696;XBP1:-1.12147611008;NR6A1:-1.13182127989;MAZ:-1.13237807482;PATZ1:-1.13891468403;HOX{A4,D4}:-1.14538897784;TLX1..3_NFIC{dimer}:-1.15052367054;HIC1:-1.20401080846;HSF1,2:-1.20650793301;GTF2I:-1.22917040339;TBP:-1.25282547436;FOXL1:-1.26411405364;TOPORS:-1.26706594834;SOX17:-1.26820995039;HOXA9_MEIS1:-1.28879535753;TEF:-1.35417147788;MYBL2:-1.36319773552;GZF1:-1.36978356935;POU6F1:-1.3951193024;ZIC1..3:-1.39840212091;TFAP2B:-1.41501417202;RXR{A,B,G}:-1.41657887095;UFEwm:-1.42819716992;GTF2A1,2:-1.45884318189;bHLH_family:-1.59272839041;TFDP1:-1.60191019792;XCPE1{core}:-1.61911374772;POU3F1..4:-1.62133123343;TEAD1:-1.73919240384;SP1:-1.80790813062;ESRRA:-1.96028045974;TFAP2{A,C}:-2.23555771947;IKZF1:-2.42812314463;PAX1,9:-2.70890168701
|top_motifs=T:3.07914668181;PDX1:2.28471045781;RUNX1..3:2.22083230066;ELF1,2,4:2.1668742045;ETS1,2:2.06108640306;PAX3,7:1.7416891684;FOX{D1,D2}:1.55144217663;SPI1:1.52022903124;NFIX:1.45505331268;RORA:1.45426751461;CRX:1.39811326496;FOXO1,3,4:1.39777776514;CDX1,2,4:1.35879442314;DMAP1_NCOR{1,2}_SMARC:1.35493372406;IRF1,2:1.28389890854;SPIB:1.22075081672;STAT1,3:1.20387386493;FOX{F1,F2,J1}:1.20011753784;GATA6:1.1503194746;LEF1_TCF7_TCF7L1,2:1.11064224979;BPTF:1.10682743318;TLX2:1.04239118226;PBX1:1.02036079442;HMX1:0.978893556167;TGIF1:0.950451015163;FOXD3:0.93947161944;SPZ1:0.924262085126;IRF7:0.847682536545;RBPJ:0.847195656491;POU1F1:0.833444168785;IKZF2:0.806035912766;NKX2-1,4:0.766478538886;RFX2..5_RFXANK_RFXAP:0.748344765726;PAX6:0.741158415467;RXRA_VDR{dimer}:0.735330048922;NKX6-1,2:0.722006634715;BREu{core}:0.692227356658;MYOD1:0.650060619528;FOXQ1:0.627045560353;ELK1,4_GABP{A,B1}:0.615675162433;FOXN1:0.592270980685;VSX1,2:0.579889181828;YY1:0.553762267858;NFIL3:0.503188260514;NFATC1..3:0.460578801419;ZEB1:0.452412870541;ZBTB16:0.439313982122;ATF5_CREB3:0.396003042475;ADNP_IRX_SIX_ZHX:0.39446739086;SOX5:0.392012686826;FOXA2:0.37759904783;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.373598076363;TBX4,5:0.318308052773;NFKB1_REL_RELA:0.314355343481;NKX2-2,8:0.301075377096;SNAI1..3:0.292474271515;CUX2:0.272387371076;PRRX1,2:0.271424039919;PAX4:0.25582232842;NR1H4:0.248535777123;CEBPA,B_DDIT3:0.221345600462;HES1:0.191055037852;NANOG{mouse}:0.166488734549;PAX2:0.165911422981;FOXP3:0.165332300994;FOX{I1,J2}:0.162338925562;ALX1:0.162104744455;POU5F1:0.15788646019;TAL1_TCF{3,4,12}:0.122369886735;STAT2,4,6:0.113991039475;SOX2:0.103188929664;CREB1:0.0852625586102;LMO2:0.0509632862859;OCT4_SOX2{dimer}:0.0362956179025;AHR_ARNT_ARNT2:0.0308755454602;SREBF1,2:0.0040461758473;ARID5B:0.00135231065989;MYB:-0.0193576424345;ATF2:-0.0209590372004;STAT5{A,B}:-0.0338614889445;NR3C1:-0.0510722992528;FOXP1:-0.0733995604976;MYFfamily:-0.145959289279;NKX2-3_NKX2-5:-0.180042941289;NR5A1,2:-0.190217362724;NANOG:-0.191365027353;HAND1,2:-0.195481372432;SMAD1..7,9:-0.199687961304;EP300:-0.203077118737;HNF4A_NR2F1,2:-0.207236382236;POU2F1..3:-0.210522478279;NRF1:-0.220109284579;PITX1..3:-0.227060015954;HOX{A6,A7,B6,B7}:-0.245586751648;HNF1A:-0.250290616476;ZNF238:-0.250470245323;FOSL2:-0.254187235521;E2F1..5:-0.268404123571;ZNF143:-0.273656882781;ZNF148:-0.28253422647;AR:-0.290415375657;GLI1..3:-0.293208193973;JUN:-0.298395942003;DBP:-0.302347296036;ATF6:-0.318785061463;HLF:-0.329703431321;MTF1:-0.333231399871;NFE2L1:-0.35648280863;GCM1,2:-0.357107656261;ATF4:-0.370251631833;GATA4:-0.378179042179;BACH2:-0.378762932964;MAFB:-0.383028569622;NKX3-1:-0.388138250374;HBP1_HMGB_SSRP1_UBTF:-0.405361503657;ESR1:-0.405901000715;NHLH1,2:-0.435745021565;TFAP4:-0.441333015454;HMGA1,2:-0.466409290433;FOS_FOS{B,L1}_JUN{B,D}:-0.468121966207;NFE2L2:-0.475394147896;GFI1:-0.501590483917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.521885450681;RFX1:-0.547749317051;SRF:-0.548876825863;NFY{A,B,C}:-0.549042462665;NFE2:-0.550705534725;RREB1:-0.570033347265;ZNF384:-0.611882509358;PAX8:-0.618440268493;TP53:-0.646786362441;MZF1:-0.648834545966;CDC5L:-0.667776574742;AIRE:-0.69130593759;FOXM1:-0.711038771767;MEF2{A,B,C,D}:-0.712200190613;ALX4:-0.728701771532;SOX{8,9,10}:-0.741829076582;REST:-0.747139746921;EN1,2:-0.798631972524;TFCP2:-0.823939544727;HOX{A5,B5}:-0.826753024992;KLF4:-0.846593925363;EBF1:-0.877236734824;LHX3,4:-0.897507493159;ZNF423:-0.901827728325;PRDM1:-0.9128483188;ZBTB6:-0.91755638621;EVI1:-0.926091972398;PAX5:-0.941498364198;HIF1A:-0.949380481646;GFI1B:-0.957512160805;ZFP161:-0.958694373519;EGR1..3:-0.979495858545;MTE{core}:-0.98260245819;MED-1{core}:-0.997416033221;PPARG:-1.03927520546;ONECUT1,2:-1.04995243991;NKX3-2:-1.11445051696;XBP1:-1.12147611008;NR6A1:-1.13182127989;MAZ:-1.13237807482;PATZ1:-1.13891468403;HOX{A4,D4}:-1.14538897784;TLX1..3_NFIC{dimer}:-1.15052367054;HIC1:-1.20401080846;HSF1,2:-1.20650793301;GTF2I:-1.22917040339;TBP:-1.25282547436;FOXL1:-1.26411405364;TOPORS:-1.26706594834;SOX17:-1.26820995039;HOXA9_MEIS1:-1.28879535753;TEF:-1.35417147788;MYBL2:-1.36319773552;GZF1:-1.36978356935;POU6F1:-1.3951193024;ZIC1..3:-1.39840212091;TFAP2B:-1.41501417202;RXR{A,B,G}:-1.41657887095;UFEwm:-1.42819716992;GTF2A1,2:-1.45884318189;bHLH_family:-1.59272839041;TFDP1:-1.60191019792;XCPE1{core}:-1.61911374772;POU3F1..4:-1.62133123343;TEAD1:-1.73919240384;SP1:-1.80790813062;ESRRA:-1.96028045974;TFAP2{A,C}:-2.23555771947;IKZF1:-2.42812314463;PAX1,9:-2.70890168701
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12201-129C5;search_select_hide=table117:FF:12201-129C5
}}
}}

Latest revision as of 18:34, 4 June 2020

Name:CD8+ T Cells (pluriselect), donor090612, donation1
Species:Human (Homo sapiens)
Library ID:CNhs12182,RDhi10017
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeT cell, CD8+
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013678
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12182 CAGE DRX008069 DRR008941
RDhi10017 RNA-Seq DRX012350 DRR013798
Accession ID Hg19

Library idBAMCTSS
CNhs12182 DRZ000366 DRZ001751
RDhi10017 DRZ002999
Accession ID Hg38

Library idBAMCTSS
CNhs12182 DRZ011716 DRZ013101
RDhi10017
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.256
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.408
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.356
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.86
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.515
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.405
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.544
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.551
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.352
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.544
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.518
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.256
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.352
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.079
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.352
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.352
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural1.01
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.86
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12182

Jaspar motifP-value
MA0002.23.12275e-10
MA0003.10.377
MA0004.10.988
MA0006.10.578
MA0007.10.997
MA0009.10.249
MA0014.10.644
MA0017.10.0259
MA0018.20.356
MA0019.10.866
MA0024.10.122
MA0025.10.689
MA0027.10.723
MA0028.10.0234
MA0029.10.987
MA0030.10.366
MA0031.10.0281
MA0035.20.107
MA0038.10.116
MA0039.20.836
MA0040.10.677
MA0041.10.607
MA0042.10.553
MA0043.10.251
MA0046.10.94
MA0047.20.0679
MA0048.10.248
MA0050.11.85035e-6
MA0051.10.00414
MA0052.10.00741
MA0055.10.318
MA0057.10.796
MA0058.10.906
MA0059.10.321
MA0060.10.0214
MA0061.10.00389
MA0062.21.44118e-9
MA0065.20.0178
MA0066.10.0934
MA0067.10.87
MA0068.10.825
MA0069.10.66
MA0070.10.396
MA0071.10.481
MA0072.10.324
MA0073.10.866
MA0074.10.714
MA0076.10.00205
MA0077.10.168
MA0078.10.809
MA0079.20.272
MA0080.21.99224e-14
MA0081.10.00848
MA0083.10.15
MA0084.10.802
MA0087.10.926
MA0088.10.0739
MA0090.10.00423
MA0091.10.655
MA0092.10.569
MA0093.10.879
MA0099.20.785
MA0100.10.732
MA0101.10.524
MA0102.20.559
MA0103.10.129
MA0104.20.212
MA0105.17.30713e-7
MA0106.10.788
MA0107.10.477
MA0108.27.05723e-9
MA0111.10.245
MA0112.20.0307
MA0113.10.56
MA0114.10.118
MA0115.10.941
MA0116.18.39917e-6
MA0117.10.731
MA0119.10.54
MA0122.10.268
MA0124.10.741
MA0125.10.309
MA0131.10.789
MA0135.10.612
MA0136.17.66885e-23
MA0137.20.05
MA0138.20.84
MA0139.10.0209
MA0140.10.03
MA0141.10.566
MA0142.10.9
MA0143.10.626
MA0144.10.132
MA0145.10.633
MA0146.10.338
MA0147.10.193
MA0148.10.164
MA0149.10.2
MA0150.10.807
MA0152.10.077
MA0153.10.807
MA0154.10.00107
MA0155.10.975
MA0156.13.53298e-19
MA0157.10.0146
MA0159.10.0687
MA0160.10.307
MA0162.10.66
MA0163.13.46983e-14
MA0164.10.531
MA0258.10.0561
MA0259.10.504



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12182

Novel motifP-value
10.17
100.03
1000.917
1010.247
1020.88
1030.271
1040.385
1050.0699
1060.32
1070.876
1080.84
1090.102
110.0629
1100.411
1110.225
1120.148
1130.147
1140.0899
1150.136
1160.982
1170.0206
1180.436
1190.297
120.942
1200.311
1210.783
1220.371
1230.082
1240.0648
1250.984
1260.16
1270.3
1280.342
1290.469
130.638
1300.853
1310.614
1320.932
1330.681
1340.757
1350.125
1360.611
1370.0957
1380.3
1390.00591
140.333
1400.0961
1410.625
1420.804
1432.42703e-5
1440.826
1450.318
1460.0996
1470.0659
1480.0535
1490.54
150.0508
1500.646
1510.203
1520.626
1530.884
1540.894
1550.0777
1560.528
1570.593
1580.186
1590.223
160.575
1600.458
1610.34
1620.394
1630.824
1640.476
1650.201
1660.689
1670.326
1680.112
1690.353
170.483
180.395
190.915
20.492
200.547
210.345
220.743
230.521
240.471
250.0736
260.384
270.0492
280.549
290.212
30.0498
300.719
310.746
320.252
330.421
340.727
350.0561
360.0137
370.213
380.525
390.772
40.766
400.466
410.113
420.0674
430.176
440.527
450.911
460.0667
470.108
480.162
490.0972
50.113
500.691
510.515
520.637
530.159
540.449
550.167
560.543
570.454
580.0353
590.247
60.773
600.244
610.177
620.0125
630.497
640.192
650.473
660.924
670.897
680.81
690.784
70.146
700.0144
710.0621
720.129
730.68
740.241
750.0493
760.432
770.98
780.17
790.351
80.525
800.00737
810.282
820.0483
830.732
840.408
850.634
860.28
870.938
880.88
890.864
90.321
900.0278
910.621
920.121
930.153
940.0488
950.0468
960.0841
970.463
980.177
990.323



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12182


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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