FFCP PHASE1:Hg19::chr12:96841308..96841312,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:96841308..96841312,+ to FFCP PHASE1:Hg19::chr12:96841308..96841312,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:96841308..96841312,+ | |||
|coexpression_cluster_id=C784 | |||
|description=CAGE_peak_at_chr12:96841308..96841312,+ | |||
|id=chr12:96841308..96841312,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.70e-29!24;CL:0000115!4.47e-18!35;CL:0000071!5.98e-18!18;CL:0002546!5.98e-18!18;CL:0002078!1.07e-14!44;CL:0005020!9.87e-14!6;CL:0002138!9.87e-14!6;CL:0005022!9.87e-14!6;CL:0000213!4.01e-11!57;CL:0000215!4.01e-11!57;CL:0000624!8.04e-09!6;CL:1000413!5.97e-08!9;CL:0002618!8.87e-08!3;CL:0002144!1.01e-07!3;CL:0000222!1.23e-07!119;CL:0000623!1.82e-07!3;CL:0000825!1.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.37e-72;24!CL:0002138;1.69e-62;6!CL:0000115;1.03e-34;36!CL:0002618;1.75e-32;3!CL:0002144;5.07e-32;3!CL:0000071;5.86e-28;18!CL:0002078;3.23e-26;45!CL:0000213;3.07e-17;58!CL:0000215;3.07e-17;58!CL:0002543;1.38e-16;6!CL:0000623;9.29e-15;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.62e-72,24;CL:0005020,1.53e-62,6;CL:0002138,1.53e-62,6;CL:0005022,1.53e-62,6;CL:0000115,1.98e-47,36;CL:0002078,1.35e-37,45;CL:0002618,1.41e-32,3;CL:0002144,2.68e-32,3;CL:0000213,9.02e-29,58;CL:0000215,9.02e-29,58;CL:0000071,4.60e-28,18;CL:0002546,4.60e-28,18;CL:0002543,1.25e-16,6;CL:0000623,1.23e-14,3;CL:0000825,1.23e-14,3;CL:0000222,8.29e-13,121;CL:0000076,1.48e-07,63 | |||
|ontology_enrichment_development_v019=CL:0005022;1.69e-62;6!CL:0002546;5.86e-28;18!UBERON:0000358;4.53e-12;1!UBERON:0005425;1.07e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!2.98e-19!69;UBERON:0001986!5.98e-18!18;UBERON:0004638!5.98e-18!18;UBERON:0004852!5.98e-18!18;UBERON:0004535!1.49e-16!110;UBERON:0001009!8.04e-16!113;UBERON:0002049!1.14e-15!79;UBERON:0007798!1.14e-15!79;UBERON:0000487!5.25e-14!22;UBERON:0001981!2.35e-13!60;UBERON:0007500!2.35e-13!60;UBERON:0004537!2.35e-13!60;UBERON:0006965!2.35e-13!60;UBERON:0004872!1.47e-12!84;UBERON:0006914!6.86e-12!25;UBERON:0001473!4.99e-10!8;UBERON:0004536!4.99e-10!8;UBERON:0006558!4.99e-10!8;UBERON:0003914!8.90e-09!118;UBERON:0003915!5.97e-08!9;UBERON:0004700!5.97e-08!9;UBERON:0001917!5.97e-08!9;UBERON:0002465!8.24e-08!10;UBERON:0001915!1.01e-07!3;UBERON:0001982!1.01e-07!3;UBERON:0000025!1.61e-07!194;UBERON:0002066!3.15e-07!5;UBERON:0001637!3.19e-07!42;UBERON:0003509!3.19e-07!42;UBERON:0004572!3.19e-07!42;UBERON:0004111!3.56e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;7.64e-47;8!UBERON:0004536;7.64e-47;8!UBERON:0006558;7.64e-47;8!UBERON:0002465;1.93e-37;10!UBERON:0010523;5.07e-32;3!UBERON:0001915;5.07e-32;3!UBERON:0001982;5.07e-32;3!UBERON:0004638;5.86e-28;18!UBERON:0001986;5.86e-28;18!UBERON:0004852;5.86e-28;18!UBERON:0000487;8.94e-23;22!UBERON:0006914;5.67e-20;25!UBERON:0002066;8.96e-20;5!UBERON:0000055;1.02e-14;65!UBERON:0002405;1.11e-13;27!UBERON:0000490;7.61e-13;33!UBERON:0002049;7.70e-13;75!UBERON:0007798;7.70e-13;75!UBERON:0000941;1.07e-11;1!UBERON:0001785;1.07e-11;1!UBERON:0002464;1.07e-11;1!UBERON:0004904;1.07e-11;1!UBERON:0001021;1.07e-11;1!UBERON:0001638;2.99e-11;9!UBERON:0010260;2.99e-11;9!UBERON:0003920;2.99e-11;9!UBERON:0004582;2.99e-11;9!UBERON:0002193;9.47e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,7.08e-47,8;UBERON:0004536,7.08e-47,8;UBERON:0006558,7.08e-47,8;UBERON:0002465,1.82e-37,10;UBERON:0010523,2.68e-32,3;UBERON:0001915,2.68e-32,3;UBERON:0001982,2.68e-32,3;UBERON:0004638,4.60e-28,18;UBERON:0001986,4.60e-28,18;UBERON:0004852,4.60e-28,18;UBERON:0000055,2.85e-24,68;UBERON:0000487,7.34e-23,22;UBERON:0002049,6.36e-21,78;UBERON:0007798,6.36e-21,78;UBERON:0006914,4.77e-20,25;UBERON:0002066,7.89e-20,5;UBERON:0004535,1.97e-14,109;UBERON:0001009,5.41e-14,112;UBERON:0000941,9.61e-12,1;UBERON:0001785,9.61e-12,1;UBERON:0002464,9.61e-12,1;UBERON:0004904,9.61e-12,1;UBERON:0001021,9.61e-12,1;UBERON:0003902,9.61e-12,1;UBERON:0005425,9.61e-12,1;UBERON:0001638,2.79e-11,9;UBERON:0010260,2.79e-11,9;UBERON:0003920,2.79e-11,9;UBERON:0004582,2.79e-11,9;UBERON:0007500,4.09e-08,59;UBERON:0001981,4.09e-08,59;UBERON:0004537,4.09e-08,59;UBERON:0006965,4.09e-08,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,0.393010762749165,0.822405995998037,0,0.32592226663359,0,0,0,0.589211814949674,0.221533894583621,0.270803863765016,0.128091319725675,0,0,0,0,0.444859689486181,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0.201606743224732,2.13952156626806,0.434473211648397,0,0.670700859703636,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0,1.25849830862972,0.275118041940067,0.626984899610432,1.55050055501597,1.06729878806013,4.68608857870538,1.61131726843659,3.04108842287405,1.46437234528902,0.367663080345869,0,7.0546785344423,2.46982309888787,1.35133776579987,0,0,0.549605231791222,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0.67355336034844,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,1.73239737313289,2.31492756288305,2.09279567458058,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,1.2937654491571,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0.308033580176089,0.532306030317022,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208843899010911,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0.295710299979268,0.159296767163702,0,0.155262956876259,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,0.393010762749165,0.822405995998037,0,0.32592226663359,0,0,0,0.589211814949674,0.221533894583621,0.270803863765016,0.128091319725675,0,0,0,0,0.444859689486181,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0.201606743224732,2.13952156626806,0.434473211648397,0,0.670700859703636,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0,1.25849830862972,0.275118041940067,0.626984899610432,1.55050055501597,1.06729878806013,4.68608857870538,1.61131726843659,3.04108842287405,1.46437234528902,0.367663080345869,0,7.0546785344423,2.46982309888787,1.35133776579987,0,0,0.549605231791222,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0.67355336034844,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,1.73239737313289,2.31492756288305,2.09279567458058,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,1.2937654491571,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0.308033580176089,0.532306030317022,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208843899010911,0.067401132980677,0,0,0,0,0,0,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0.295710299979268,0.159296767163702,0,0.155262956876259,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr12:96841308..96841312,+ | |||
}} | }} |
Latest revision as of 13:56, 24 July 2015
Short description: | p@chr12:96841308..96841312, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:96841308..96841312, + |
Coexpression cluster: | C784_Endothelial_Lymphatic_Renal_placenta_Hepatic_chronic_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.62e-72 | 24 |
lymphangioblast | 1.53e-62 | 6 |
endothelial cell of lymphatic vessel | 1.53e-62 | 6 |
vascular lymphangioblast | 1.53e-62 | 6 |
endothelial cell | 1.98e-47 | 36 |
meso-epithelial cell | 1.35e-37 | 45 |
endothelial cell of umbilical vein | 1.41e-32 | 3 |
capillary endothelial cell | 2.68e-32 | 3 |
lining cell | 9.02e-29 | 58 |
barrier cell | 9.02e-29 | 58 |
blood vessel endothelial cell | 4.60e-28 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.60e-28 | 18 |
vein endothelial cell | 1.25e-16 | 6 |
natural killer cell | 1.23e-14 | 3 |
pro-NK cell | 1.23e-14 | 3 |
mesodermal cell | 8.29e-13 | 121 |
squamous epithelial cell | 1.48e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 7.08e-47 | 8 |
lymph vasculature | 7.08e-47 | 8 |
lymphatic part of lymphoid system | 7.08e-47 | 8 |
lymphoid system | 1.82e-37 | 10 |
microcirculatory vessel | 2.68e-32 | 3 |
endothelium of capillary | 2.68e-32 | 3 |
capillary | 2.68e-32 | 3 |
blood vessel endothelium | 4.60e-28 | 18 |
endothelium | 4.60e-28 | 18 |
cardiovascular system endothelium | 4.60e-28 | 18 |
vessel | 2.85e-24 | 68 |
simple squamous epithelium | 7.34e-23 | 22 |
vasculature | 6.36e-21 | 78 |
vascular system | 6.36e-21 | 78 |
squamous epithelium | 4.77e-20 | 25 |
umbilical vein | 7.89e-20 | 5 |
cardiovascular system | 1.97e-14 | 109 |
circulatory system | 5.41e-14 | 112 |
cranial nerve II | 9.61e-12 | 1 |
cranial nerve | 9.61e-12 | 1 |
nerve trunk | 9.61e-12 | 1 |
nerve connecting eye with brain | 9.61e-12 | 1 |
nerve | 9.61e-12 | 1 |
retinal neural layer | 9.61e-12 | 1 |
presumptive neural retina | 9.61e-12 | 1 |
vein | 2.79e-11 | 9 |
umbilical blood vessel | 2.79e-11 | 9 |
venous blood vessel | 2.79e-11 | 9 |
venous system | 2.79e-11 | 9 |
epithelial tube open at both ends | 4.09e-08 | 59 |
blood vessel | 4.09e-08 | 59 |
blood vasculature | 4.09e-08 | 59 |
vascular cord | 4.09e-08 | 59 |