FFCP PHASE1:Hg19::chr15:67358163..67358192,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:67358163..67358192,+ to FFCP PHASE1:Hg19::chr15:67358163..67358192,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=P84022 | |UniProt=P84022 | ||
|association_with_transcript=0bp_to_ENST00000327367,ENST00000535241_5end | |||
|cluster_id=chr15:67358163..67358192,+ | |||
|description=CAGE_peak_1_at_SMAD3_5end | |||
|id=chr15:67358163..67358192,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.19e-22!119;CL:0002057!1.01e-15!42;CL:0000860!2.64e-13!45;CL:0000213!7.65e-13!57;CL:0000215!7.65e-13!57;CL:0002371!9.80e-11!591;CL:0000183!1.95e-10!59;CL:0000144!2.90e-10!625;CL:0002078!1.05e-09!44;CL:0000187!3.28e-09!54;CL:0000680!4.74e-09!57;CL:0000056!4.74e-09!57;CL:0000355!4.74e-09!57;CL:0000192!1.12e-08!42;CL:0000514!1.12e-08!42;CL:0000012!2.57e-08!682;CL:0000548!4.07e-08!679;CL:0000004!4.07e-08!679;CL:0000255!4.07e-08!679;CL:0002139!1.05e-07!24;CL:0000076!1.30e-07!62;CL:0000115!4.14e-07!35;CL:0000359!7.83e-07!32;CL:0000071!8.52e-07!18;CL:0002546!8.52e-07!18;CL:0000003!8.93e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.07e-12;33!CL:0002057;1.07e-12;33!CL:0000213;6.90e-08;58!CL:0000215;6.90e-08;58!CL:0002139;1.24e-07;24!CL:0000576;2.84e-07;48!CL:0002078;4.15e-07;45!CL:0000192;7.33e-07;43!CL:0000071;9.75e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.73e-23,121;CL:0000860,1.01e-15,42;CL:0002057,1.01e-15,42;CL:0000213,2.61e-13,58;CL:0000215,2.61e-13,58;CL:0002078,3.69e-10,45;CL:0000473,7.47e-10,48;CL:0000234,7.47e-10,48;CL:0000187,1.65e-09,55;CL:0000680,2.42e-09,58;CL:0000056,2.42e-09,58;CL:0000355,2.42e-09,58;CL:0000192,5.54e-09,43;CL:0000514,5.54e-09,43;CL:0002139,1.05e-07,24;CL:0000115,1.53e-07,36;CL:0000076,1.62e-07,63;CL:0000359,7.82e-07,32;CL:0000071,8.52e-07,18;CL:0002546,8.52e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;6.83e-12;42!CL:0000222;5.35e-07;121!CL:0000514;7.33e-07;43!CL:0002546;9.75e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.66e-16!79;UBERON:0007798!1.66e-16!79;UBERON:0003914!2.39e-16!118;UBERON:0003081!3.79e-16!216;UBERON:0000055!6.59e-16!69;UBERON:0001981!1.25e-14!60;UBERON:0007500!1.25e-14!60;UBERON:0004537!1.25e-14!60;UBERON:0006965!1.25e-14!60;UBERON:0004535!9.64e-14!110;UBERON:0000490!1.22e-13!138;UBERON:0001009!2.00e-13!113;UBERON:0002204!1.07e-12!167;UBERON:0004872!4.18e-12!84;UBERON:0001637!8.49e-12!42;UBERON:0003509!8.49e-12!42;UBERON:0004572!8.49e-12!42;UBERON:0000926!1.16e-10!448;UBERON:0004120!1.16e-10!448;UBERON:0006603!1.16e-10!448;UBERON:0005256!1.50e-10!143;UBERON:0002385!4.34e-09!63;UBERON:0001015!4.34e-09!63;UBERON:0000383!4.34e-09!63;UBERON:0001134!4.36e-09!61;UBERON:0002036!4.36e-09!61;UBERON:0003082!4.36e-09!61;UBERON:0004573!8.30e-09!33;UBERON:0004571!8.30e-09!33;UBERON:0000486!1.15e-08!82;UBERON:0004290!1.50e-07!70;UBERON:0006914!1.81e-07!25;UBERON:0000914!4.31e-07!83;UBERON:0002329!4.31e-07!83;UBERON:0003077!4.31e-07!83;UBERON:0003059!4.31e-07!83;UBERON:0007282!4.31e-07!83;UBERON:0009618!4.31e-07!83;UBERON:0007285!4.31e-07!83;UBERON:0001986!8.52e-07!18;UBERON:0004638!8.52e-07!18;UBERON:0004852!8.52e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.65e-09;42!UBERON:0003509;3.65e-09;42!UBERON:0004572;3.65e-09;42!UBERON:0007500;2.88e-08;56!UBERON:0001981;2.88e-08;56!UBERON:0004537;2.88e-08;56!UBERON:0004573;3.85e-08;33!UBERON:0004571;3.85e-08;33!UBERON:0000055;4.37e-08;65!UBERON:0003914;5.47e-08;74!UBERON:0006914;2.01e-07;25!UBERON:0002049;2.07e-07;75!UBERON:0007798;2.07e-07;75!UBERON:0004638;9.75e-07;18!UBERON:0001986;9.75e-07;18!UBERON:0004852;9.75e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.33e-16,78;UBERON:0007798,1.33e-16,78;UBERON:0003914,4.87e-16,117;UBERON:0000055,5.09e-16,68;UBERON:0002204,4.99e-15,167;UBERON:0003081,9.12e-15,203;UBERON:0007500,9.42e-15,59;UBERON:0001981,9.42e-15,59;UBERON:0004537,9.42e-15,59;UBERON:0006965,9.42e-15,59;UBERON:0004535,8.87e-14,109;UBERON:0001009,1.86e-13,112;UBERON:0000490,1.09e-12,148;UBERON:0000926,1.50e-12,315;UBERON:0004120,1.50e-12,315;UBERON:0006603,1.50e-12,315;UBERON:0004872,3.72e-12,83;UBERON:0001637,8.48e-12,42;UBERON:0003509,8.48e-12,42;UBERON:0004572,8.48e-12,42;UBERON:0003104,4.24e-10,160;UBERON:0009142,4.24e-10,160;UBERON:0002385,2.24e-09,64;UBERON:0001015,2.24e-09,64;UBERON:0000383,2.24e-09,64;UBERON:0001134,2.24e-09,62;UBERON:0002036,2.24e-09,62;UBERON:0003082,2.24e-09,62;UBERON:0005256,5.94e-09,122;UBERON:0000486,6.28e-09,83;UBERON:0007503,7.63e-09,78;UBERON:0004573,8.29e-09,33;UBERON:0004571,8.29e-09,33;UBERON:0002329,8.23e-08,71;UBERON:0003059,8.23e-08,71;UBERON:0007282,8.23e-08,71;UBERON:0004290,8.23e-08,71;UBERON:0009618,8.23e-08,71;UBERON:0006914,1.81e-07,25;UBERON:0003077,2.08e-07,72;UBERON:0007285,2.08e-07,72;UBERON:0007524,2.12e-07,73;UBERON:0004638,8.52e-07,18;UBERON:0001986,8.52e-07,18;UBERON:0004852,8.52e-07,18 | |||
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| ||
|short_description=p1@SMAD3 | |||
}} | }} |
Latest revision as of 17:01, 18 September 2015
Short description: | p1@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327367, ENST00000535241_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.73e-23 | 121 |
classical monocyte | 1.01e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-15 | 42 |
lining cell | 2.61e-13 | 58 |
barrier cell | 2.61e-13 | 58 |
meso-epithelial cell | 3.69e-10 | 45 |
defensive cell | 7.47e-10 | 48 |
phagocyte | 7.47e-10 | 48 |
muscle cell | 1.65e-09 | 55 |
muscle precursor cell | 2.42e-09 | 58 |
myoblast | 2.42e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-09 | 58 |
smooth muscle cell | 5.54e-09 | 43 |
smooth muscle myoblast | 5.54e-09 | 43 |
endothelial cell of vascular tree | 1.05e-07 | 24 |
endothelial cell | 1.53e-07 | 36 |
squamous epithelial cell | 1.62e-07 | 63 |
vascular associated smooth muscle cell | 7.82e-07 | 32 |
blood vessel endothelial cell | 8.52e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.52e-07 | 18 |