FFCP PHASE1:Hg19::chr22:39348723..39348754,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:39348723..39348754,+ to FFCP PHASE1:Hg19::chr22:39348723..39348754,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=200315 | |EntrezGene=200315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17343 | |HGNC=17343 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000495988_5end | |||
|cluster_id=chr22:39348723..39348754,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_APOBEC3A_5end | |||
|id=chr22:39348723..39348754,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.90e-55!42;CL:0000860!2.33e-50!45;CL:0000766!1.06e-42!76;CL:0002194!9.04e-37!63;CL:0000576!9.04e-37!63;CL:0000040!9.04e-37!63;CL:0000559!9.04e-37!63;CL:0000738!1.21e-36!140;CL:0002009!3.81e-35!65;CL:0000839!5.11e-33!70;CL:0002087!6.35e-33!119;CL:0000557!7.87e-31!71;CL:0000037!2.75e-29!172;CL:0000566!2.75e-29!172;CL:0002031!5.33e-28!124;CL:0000763!1.61e-27!112;CL:0000049!1.61e-27!112;CL:0002032!4.08e-27!165;CL:0000837!4.08e-27!165;CL:0000988!2.57e-26!182;CL:0002393!1.14e-12!9;CL:0002397!1.14e-12!9;CL:0000094!1.67e-12!8;CL:0000081!1.71e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.13e-66;33!CL:0002057;5.13e-66;33!CL:0000576;9.93e-49;48!CL:0000473;1.72e-45;39!CL:0000234;1.72e-45;39!CL:0000766;9.06e-35;69!CL:0000094;5.03e-20;8!CL:0000763;1.82e-16;100!CL:0002087;2.08e-16;104!CL:0000081;4.24e-14;11!CL:0002393;6.69e-14;6!CL:0002397;6.69e-14;6!CL:0000738;1.57e-11;136!CL:0000775;4.18e-09;3!CL:0000988;1.18e-08;177!CL:0000875;3.99e-08;3!CL:0002396;3.99e-08;3!CL:0000767;1.03e-07;3!CL:0000226;1.82e-07;3!CL:0000842;1.82e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.95e-92,42;CL:0002057,1.95e-92,42;CL:0000473,2.73e-79,48;CL:0000234,2.73e-79,48;CL:0000766,3.39e-72,72;CL:0002194,6.71e-61,59;CL:0000576,6.71e-61,59;CL:0000040,6.71e-61,59;CL:0000559,6.71e-61,59;CL:0002009,1.58e-58,61;CL:0000839,3.18e-53,66;CL:0000557,2.95e-52,67;CL:0000738,1.90e-50,136;CL:0000763,1.46e-47,108;CL:0000049,1.46e-47,108;CL:0002087,7.30e-44,115;CL:0000037,6.92e-41,168;CL:0002032,2.04e-38,161;CL:0000837,2.04e-38,161;CL:0000988,5.61e-38,177;CL:0002031,5.11e-36,120;CL:0002393,2.63e-20,9;CL:0002397,2.63e-20,9;CL:0000094,4.97e-20,8;CL:0000081,4.20e-14,11;CL:0000134,4.76e-11,354;CL:0002320,1.53e-10,361;CL:0000775,4.18e-09,3;CL:0000219,8.92e-09,386;CL:0000875,4.24e-08,3;CL:0002396,4.24e-08,3;CL:0000767,1.02e-07,3;CL:0000226,1.77e-07,3;CL:0000842,1.77e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.25e-65;42!CL:0000049;1.14e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.16e-38!102;UBERON:0003061!1.16e-38!102;UBERON:0002193!6.57e-36!112;UBERON:0007023!7.00e-30!115;UBERON:0002371!1.34e-25!80;UBERON:0001474!9.61e-23!86;UBERON:0002405!2.14e-19!115;UBERON:0004765!6.58e-19!101;UBERON:0001434!6.58e-19!101;UBERON:0003081!1.53e-13!216;UBERON:0000178!1.98e-13!15;UBERON:0000179!1.98e-13!15;UBERON:0000463!1.98e-13!15;UBERON:0002204!1.80e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.60e-22;15!UBERON:0000179;1.60e-22;15!UBERON:0000463;1.60e-22;15!UBERON:0002390;1.39e-11;32!UBERON:0002193;4.09e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.37e-64,98;UBERON:0003061,2.37e-64,98;UBERON:0002193,2.62e-59,108;UBERON:0002371,1.09e-44,76;UBERON:0001474,1.45e-40,82;UBERON:0002405,3.58e-40,93;UBERON:0004765,6.44e-36,90;UBERON:0001434,3.73e-31,100;UBERON:0003081,2.76e-23,203;UBERON:0000178,1.57e-22,15;UBERON:0000179,1.57e-22,15;UBERON:0000463,1.57e-22,15;UBERON:0002204,4.21e-14,167;UBERON:0000926,1.56e-10,315;UBERON:0004120,1.56e-10,315;UBERON:0006603,1.56e-10,315;UBERON:0002384,2.04e-10,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.4833418996816,16.8884935162774,10.217864138861,0,0,0,0,0,0,22.1598163412751,18.450089167253,24.3052175201754,0,0,0,25.1538953088647,18.8937971844405,30.323007648477,30.9130619084561,17.6802191849385,16.7241440283356,28.1938544475707,25.359909946381,19.8645073106412,30.6823655855591,19.3645405075148,28.4395621848118,28.0481085918481,12.8265890527188,16.6295378489363,52.9525133801661,23.7487480036309,47.9502844349281,29.026914416431,26.9275937789203,33.2455305415501,52.5278721917737,28.9366464592481,35.5008681927478,24.8736178604176,23.4667313289091,26.062661364614,41.1671661790691,32.0401543309181,33.2285506812929,22.6043156353778,30.8276234949313,26.6266479795637,37.6300914340759,44.4523602810859,49.1820295293065,20.2359048056286,30.0364182570626,44.387389364806,0,1.63841583378639,0.889509253863555,2.13365111283254,0.400395987036012,2.29900975981793,3.30522436392431,0,0.569212969109448,0.587237189370939,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,1.27426165729639,0,0,2.71035214339991,0.639933055772092,1.24930726552346,6.86654030927649,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,303.094960102945,399.413672072775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,340.049188872021,341.044063492588,384.163180955205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.958705384513,28.9057029096947,6.19019835259977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522870902049801,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.88287601553558,0,0,0,0,104.026759892595,110.107757828502,182.287099895732,91.481001775791,116.415523283393,162.766801109372,104.766098824194,157.83191008256,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,8.93113896364988,0,0,0,2.73543333562856,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,55.0811112397962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,1.20990716048664,0,1.70603764996917,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.798716001995964,0.858452096273142,0.669514372325618,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.439656701034247,0,0.258565912723101,0.13223260174269,0,0,2.88326013932776,0.78602152549833,8.28478110694391,11.4118185016749,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.250381861413,0,0.110929051536852,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0.620060389503552,0.126831620387814,0,0,0.496211178389294,0,0,1.07140367175657,0,0,0,0.975726071789027,0,0,0,0,0,0,0.235479278551542,0.471346769748006,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.513314034281235,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.245148321753905,0,0,1.18818560130834,0,0,8.55253653616668,3.15843651070528,0,0,0,0,0,0,1.72007499781742,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0.20686599172379,2.98527574661373,0.23806443146374,0.129177819672012,0.620747142958579,0,0.0636471582781649,0,0,0,0.134704106029175,1.29099969706817,0,0,0,0,0,0,0,0,0.665756774185513,0.402547587182052,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.4833418996816,16.8884935162774,10.217864138861,0,0,0,0,0,0,22.1598163412751,18.450089167253,24.3052175201754,0,0,0,25.1538953088647,18.8937971844405,30.323007648477,30.9130619084561,17.6802191849385,16.7241440283356,28.1938544475707,25.359909946381,19.8645073106412,30.6823655855591,19.3645405075148,28.4395621848118,28.0481085918481,12.8265890527188,16.6295378489363,52.9525133801661,23.7487480036309,47.9502844349281,29.026914416431,26.9275937789203,33.2455305415501,52.5278721917737,28.9366464592481,35.5008681927478,24.8736178604176,23.4667313289091,26.062661364614,41.1671661790691,32.0401543309181,33.2285506812929,22.6043156353778,30.8276234949313,26.6266479795637,37.6300914340759,44.4523602810859,49.1820295293065,20.2359048056286,30.0364182570626,44.387389364806,0,1.63841583378639,0.889509253863555,2.13365111283254,0.400395987036012,2.29900975981793,3.30522436392431,0,0.569212969109448,0.587237189370939,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,1.27426165729639,0,0,2.71035214339991,0.639933055772092,1.24930726552346,6.86654030927649,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,303.094960102945,399.413672072775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,340.049188872021,341.044063492588,384.163180955205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.958705384513,28.9057029096947,6.19019835259977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522870902049801,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.88287601553558,0,0,0,0,104.026759892595,110.107757828502,182.287099895732,91.481001775791,116.415523283393,162.766801109372,104.766098824194,157.83191008256,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,8.93113896364988,0,0,0,2.73543333562856,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,55.0811112397962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,1.20990716048664,0,1.70603764996917,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.798716001995964,0.858452096273142,0.669514372325618,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.439656701034247,0,0.258565912723101,0.13223260174269,0,0,2.88326013932776,0.78602152549833,8.28478110694391,11.4118185016749,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.250381861413,0,0.110929051536852,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0.620060389503552,0.126831620387814,0,0,0.496211178389294,0,0,1.07140367175657,0,0,0,0.975726071789027,0,0,0,0,0,0,0.235479278551542,0.471346769748006,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.513314034281235,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.245148321753905,0,0,1.18818560130834,0,0,8.55253653616668,3.15843651070528,0,0,0,0,0,0,1.72007499781742,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0.20686599172379,2.98527574661373,0.23806443146374,0.129177819672012,0.620747142958579,0,0.0636471582781649,0,0,0,0.134704106029175,1.29099969706817,0,0,0,0,0,0,0,0,0.665756774185513,0.402547587182052,0 | ||
|short_description=p2@APOBEC3A | |||
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Latest revision as of 17:23, 24 September 2015
Short description: | p2@APOBEC3A |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOBEC3A_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000495988_5end |
EntrezGene: | APOBEC3A |
HGNC: | 17343 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.37e-64 | 98 |
blood island | 2.37e-64 | 98 |
hemolymphoid system | 2.62e-59 | 108 |
bone marrow | 1.09e-44 | 76 |
bone element | 1.45e-40 | 82 |
immune system | 3.58e-40 | 93 |
skeletal element | 6.44e-36 | 90 |
skeletal system | 3.73e-31 | 100 |
lateral plate mesoderm | 2.76e-23 | 203 |
blood | 1.57e-22 | 15 |
haemolymphatic fluid | 1.57e-22 | 15 |
organism substance | 1.57e-22 | 15 |
musculoskeletal system | 4.21e-14 | 167 |
mesoderm | 1.56e-10 | 315 |
mesoderm-derived structure | 1.56e-10 | 315 |
presumptive mesoderm | 1.56e-10 | 315 |
connective tissue | 2.04e-10 | 371 |