FFCP PHASE1:Hg19::chr2:27274506..27274543,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:27274506..27274543,+ to FFCP PHASE1:Hg19::chr2:27274506..27274543,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60509 | |EntrezGene=60509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26147 | |HGNC=26147 | ||
|TSSclassifier=strong | |||
|UniProt=C9JTY1 | |UniProt=C9JTY1 | ||
|association_with_transcript=0bp_to_ENST00000451003,ENST00000477136,ENST00000487078_5end | |||
|cluster_id=chr2:27274506..27274543,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_AGBL5_5end | |||
|id=chr2:27274506..27274543,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.50e-29!254;CL:0002321!4.06e-14!248;CL:0000220!2.05e-13!246;CL:0000076!2.62e-08!62;CL:0000221!3.16e-07!71 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.23e-29,253;CL:0002321,6.89e-14,250;CL:0000076,4.95e-08,63;CL:0000221,5.27e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.35e-20!143;DOID:14566!1.89e-19!239;DOID:162!4.69e-19!235;DOID:305!1.03e-15!106;DOID:3095!5.39e-07!22;DOID:2994!5.39e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.27e-07;22!DOID:2994;4.27e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.35e-20,143;DOID:14566,1.89e-19,239;DOID:162,4.69e-19,235;DOID:305,1.03e-15,106;DOID:3095,5.39e-07,22;DOID:2994,5.39e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005177!1.55e-14!107;UBERON:0000481!1.76e-12!347;UBERON:0001048!1.60e-11!168;UBERON:0003104!4.01e-11!238;UBERON:0009142!4.01e-11!238;UBERON:0004119!8.92e-10!169;UBERON:0000925!8.92e-10!169;UBERON:0006595!8.92e-10!169;UBERON:0000466!1.84e-09!126;UBERON:0000077!3.61e-09!130;UBERON:0005172!3.95e-09!55;UBERON:0005173!3.95e-09!55;UBERON:0000475!9.75e-09!365;UBERON:0000119!1.11e-08!312;UBERON:0000464!1.47e-08!104;UBERON:0000483!1.48e-08!309;UBERON:0000970!2.27e-08!20;UBERON:0001456!3.04e-08!21;UBERON:0000019!3.44e-08!19;UBERON:0000047!3.44e-08!19;UBERON:0004088!3.44e-08!19;UBERON:0003072!3.44e-08!19;UBERON:0003071!3.44e-08!19;UBERON:0004128!3.44e-08!19;UBERON:0001007!3.76e-08!155;UBERON:0001555!3.76e-08!155;UBERON:0007026!3.76e-08!155;UBERON:0000020!4.79e-08!23;UBERON:0000063!4.88e-08!97;UBERON:0001041!5.35e-08!98;UBERON:0009569!5.55e-08!113;UBERON:0006554!7.79e-08!44;UBERON:0002104!7.89e-08!21;UBERON:0001032!1.41e-07!24;UBERON:0004456!1.41e-07!24;UBERON:0002100!1.75e-07!216;UBERON:0001008!2.10e-07!45;UBERON:0004921!3.21e-07!129;UBERON:0004185!3.21e-07!129;UBERON:0002417!3.39e-07!61;UBERON:0000916!3.39e-07!61;UBERON:0005085!6.97e-07!29;UBERON:0002113!8.49e-07!27;UBERON:0003918!8.49e-07!27;UBERON:0005095!8.49e-07!27;UBERON:0007687!8.49e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.25e-09;30!UBERON:0001008;2.25e-09;30!UBERON:0000970;1.83e-08;20!UBERON:0001456;2.09e-08;21!UBERON:0000019;2.57e-08;19!UBERON:0000047;2.57e-08;19!UBERON:0004088;2.57e-08;19!UBERON:0010230;2.57e-08;19!UBERON:0000020;3.96e-08;23!UBERON:0002104;6.48e-08;21!UBERON:0001032;1.19e-07;24!UBERON:0004456;1.19e-07;24!UBERON:0002113;1.99e-07;24!UBERON:0011143;1.99e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,6.29e-15,101;UBERON:0001048,1.22e-09,160;UBERON:0005172,1.50e-09,54;UBERON:0005173,1.50e-09,54;UBERON:0006554,3.77e-09,47;UBERON:0001008,1.10e-08,48;UBERON:0004119,3.21e-08,160;UBERON:0000925,3.21e-08,160;UBERON:0006595,3.21e-08,160;UBERON:0009569,3.65e-08,112;UBERON:0002100,4.08e-08,199;UBERON:0000119,6.56e-08,309;UBERON:0000970,7.89e-08,21;UBERON:0002104,7.89e-08,21;UBERON:0000483,8.60e-08,306;UBERON:0001456,9.93e-08,22;UBERON:0000019,1.22e-07,20;UBERON:0000047,1.22e-07,20;UBERON:0010312,1.22e-07,20;UBERON:0004088,1.22e-07,20;UBERON:0010230,1.22e-07,20;UBERON:0003072,1.22e-07,20;UBERON:0004128,1.22e-07,20;UBERON:0003071,1.22e-07,20;UBERON:0000020,1.41e-07,24;UBERON:0001032,1.41e-07,24;UBERON:0004456,1.41e-07,24;UBERON:0002417,1.59e-07,60;UBERON:0000916,1.59e-07,60;UBERON:0002113,2.37e-07,26;UBERON:0003918,2.37e-07,26;UBERON:0011143,2.37e-07,26;UBERON:0005095,2.37e-07,26;UBERON:0007687,2.37e-07,26;UBERON:0001007,6.85e-07,145;UBERON:0001555,6.85e-07,145;UBERON:0007026,6.85e-07,145 | |||
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| ||
|short_description=p1@AGBL5 | |||
}} | }} |
Latest revision as of 15:46, 16 September 2015
Short description: | p1@AGBL5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AGBL5_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000451003, ENST00000477136, ENST00000487078_5end |
EntrezGene: | AGBL5 |
HGNC: | 26147 |
UniProt: | C9JTY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.23e-29 | 253 |
embryonic cell | 6.89e-14 | 250 |
squamous epithelial cell | 4.95e-08 | 63 |
ectodermal cell | 5.27e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 6.29e-15 | 101 |
primordium | 1.22e-09 | 160 |
abdomen element | 1.50e-09 | 54 |
abdominal segment element | 1.50e-09 | 54 |
urinary system structure | 3.77e-09 | 47 |
renal system | 1.10e-08 | 48 |
endoderm-derived structure | 3.21e-08 | 160 |
endoderm | 3.21e-08 | 160 |
presumptive endoderm | 3.21e-08 | 160 |
subdivision of trunk | 3.65e-08 | 112 |
trunk | 4.08e-08 | 199 |
cell layer | 6.56e-08 | 309 |
eye | 7.89e-08 | 21 |
visual system | 7.89e-08 | 21 |
epithelium | 8.60e-08 | 306 |
face | 9.93e-08 | 22 |
camera-type eye | 1.22e-07 | 20 |
simple eye | 1.22e-07 | 20 |
immature eye | 1.22e-07 | 20 |
ocular region | 1.22e-07 | 20 |
eyeball of camera-type eye | 1.22e-07 | 20 |
optic cup | 1.22e-07 | 20 |
optic vesicle | 1.22e-07 | 20 |
eye primordium | 1.22e-07 | 20 |
sense organ | 1.41e-07 | 24 |
sensory system | 1.41e-07 | 24 |
entire sense organ system | 1.41e-07 | 24 |
abdominal segment of trunk | 1.59e-07 | 60 |
abdomen | 1.59e-07 | 60 |
kidney | 2.37e-07 | 26 |
kidney mesenchyme | 2.37e-07 | 26 |
upper urinary tract | 2.37e-07 | 26 |
kidney rudiment | 2.37e-07 | 26 |
kidney field | 2.37e-07 | 26 |
digestive system | 6.85e-07 | 145 |
digestive tract | 6.85e-07 | 145 |
primitive gut | 6.85e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.35e-20 | 143 |
disease of cellular proliferation | 1.89e-19 | 239 |
cancer | 4.69e-19 | 235 |
carcinoma | 1.03e-15 | 106 |
germ cell and embryonal cancer | 5.39e-07 | 22 |
germ cell cancer | 5.39e-07 | 22 |