FFCP PHASE1:Hg19::chrX:123095659..123095682,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:123095659..123095682,+ to FFCP PHASE1:Hg19::chrX:123095659..123095682,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10735 | |EntrezGene=10735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11355 | |HGNC=11355 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471107_5end | |||
|cluster_id=chrX:123095659..123095682,+ | |||
|description=CAGE_peak_7_at_STAG2_5end | |||
|id=chrX:123095659..123095682,+ | |||
|ontology_enrichment_celltype=CL:0000763!2.12e-23!112;CL:0000049!2.12e-23!112;CL:0000839!5.08e-23!70;CL:0000766!2.06e-22!76;CL:0000557!4.40e-22!71;CL:0002057!1.61e-21!42;CL:0000860!1.82e-21!45;CL:0002009!3.83e-19!65;CL:0002194!4.64e-19!63;CL:0000576!4.64e-19!63;CL:0000040!4.64e-19!63;CL:0000559!4.64e-19!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.73e-19;33!CL:0002057;5.73e-19;33!CL:0000473;1.29e-17;39!CL:0000234;1.29e-17;39!CL:0000576;9.29e-16;48!CL:0000766;1.08e-13;69!CL:0000763;1.33e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.71e-26,108;CL:0000049,1.71e-26,108;CL:0000473,3.05e-26,48;CL:0000234,3.05e-26,48;CL:0000839,3.21e-26,66;CL:0000766,3.52e-26,72;CL:0000557,1.02e-24,67;CL:0000860,2.67e-24,42;CL:0002057,2.67e-24,42;CL:0002194,1.34e-21,59;CL:0000576,1.34e-21,59;CL:0000040,1.34e-21,59;CL:0000559,1.34e-21,59;CL:0002009,2.62e-21,61;CL:0002032,3.03e-08,161;CL:0000837,3.03e-08,161;CL:0000037,4.27e-08,168 | |||
|ontology_enrichment_development_v019=CL:0002057;1.81e-17;42!CL:0000049;2.66e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.51e-19!102;UBERON:0003061!1.51e-19!102;UBERON:0001474!2.68e-18!86;UBERON:0002371!9.29e-18!80;UBERON:0007023!4.23e-16!115;UBERON:0002193!7.60e-16!112;UBERON:0004765!1.09e-15!101;UBERON:0001434!1.09e-15!101;UBERON:0002405!3.24e-12!115;UBERON:0001049!6.77e-11!57;UBERON:0005068!6.77e-11!57;UBERON:0006241!6.77e-11!57;UBERON:0007135!6.77e-11!57;UBERON:0000073!9.74e-11!94;UBERON:0001016!9.74e-11!94;UBERON:0000062!1.52e-10!511;UBERON:0001017!5.34e-10!82;UBERON:0000955!1.03e-09!69;UBERON:0006238!1.03e-09!69;UBERON:0005743!1.76e-09!86;UBERON:0003080!2.43e-09!42;UBERON:0002780!4.04e-09!41;UBERON:0001890!4.04e-09!41;UBERON:0006240!4.04e-09!41;UBERON:0002616!4.37e-09!59;UBERON:0000922!4.57e-09!612;UBERON:0000468!2.90e-07!659;UBERON:0002020!2.91e-07!34;UBERON:0003528!2.91e-07!34;UBERON:0002050!3.77e-07!605;UBERON:0005423!3.77e-07!605;UBERON:0001893!4.78e-07!34;UBERON:0002791!5.44e-07!33;UBERON:0000923!5.66e-07!604;UBERON:0005291!5.66e-07!604;UBERON:0006598!5.66e-07!604;UBERON:0002532!5.66e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.80e-07;41!UBERON:0001890;5.80e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.51e-23,98;UBERON:0003061,9.51e-23,98;UBERON:0001474,2.26e-21,82;UBERON:0002371,4.63e-21,76;UBERON:0002193,3.87e-19,108;UBERON:0004765,8.40e-19,90;UBERON:0007023,1.90e-17,114;UBERON:0001434,6.17e-16,100;UBERON:0002405,6.21e-16,93;UBERON:0001049,1.94e-10,56;UBERON:0005068,1.94e-10,56;UBERON:0006241,1.94e-10,56;UBERON:0007135,1.94e-10,56;UBERON:0001016,3.45e-10,89;UBERON:0000073,1.86e-09,53;UBERON:0002616,1.86e-09,53;UBERON:0001017,2.96e-09,81;UBERON:0002780,8.24e-09,41;UBERON:0001890,8.24e-09,41;UBERON:0003080,8.24e-09,41;UBERON:0006240,8.24e-09,41;UBERON:0000955,2.07e-08,68;UBERON:0006238,2.07e-08,68;UBERON:0000922,7.62e-07,592;UBERON:0003528,9.41e-07,34;UBERON:0002020,9.41e-07,34 | |||
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| ||
|short_description=p7@STAG2 | |||
}} | }} |
Latest revision as of 07:51, 19 September 2015
Short description: | p7@STAG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_STAG2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000471107_5end |
EntrezGene: | STAG2 |
HGNC: | 11355 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.71e-26 | 108 |
common myeloid progenitor | 1.71e-26 | 108 |
defensive cell | 3.05e-26 | 48 |
phagocyte | 3.05e-26 | 48 |
myeloid lineage restricted progenitor cell | 3.21e-26 | 66 |
myeloid leukocyte | 3.52e-26 | 72 |
granulocyte monocyte progenitor cell | 1.02e-24 | 67 |
classical monocyte | 2.67e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.67e-24 | 42 |
monopoietic cell | 1.34e-21 | 59 |
monocyte | 1.34e-21 | 59 |
monoblast | 1.34e-21 | 59 |
promonocyte | 1.34e-21 | 59 |
macrophage dendritic cell progenitor | 2.62e-21 | 61 |
hematopoietic oligopotent progenitor cell | 3.03e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.03e-08 | 161 |
hematopoietic stem cell | 4.27e-08 | 168 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.51e-23 | 98 |
blood island | 9.51e-23 | 98 |
bone element | 2.26e-21 | 82 |
bone marrow | 4.63e-21 | 76 |
hemolymphoid system | 3.87e-19 | 108 |
skeletal element | 8.40e-19 | 90 |
adult organism | 1.90e-17 | 114 |
skeletal system | 6.17e-16 | 100 |
immune system | 6.21e-16 | 93 |
neural tube | 1.94e-10 | 56 |
neural rod | 1.94e-10 | 56 |
future spinal cord | 1.94e-10 | 56 |
neural keel | 1.94e-10 | 56 |
nervous system | 3.45e-10 | 89 |
regional part of nervous system | 1.86e-09 | 53 |
regional part of brain | 1.86e-09 | 53 |
central nervous system | 2.96e-09 | 81 |
regional part of forebrain | 8.24e-09 | 41 |
forebrain | 8.24e-09 | 41 |
anterior neural tube | 8.24e-09 | 41 |
future forebrain | 8.24e-09 | 41 |
brain | 2.07e-08 | 68 |
future brain | 2.07e-08 | 68 |
embryo | 7.62e-07 | 592 |
brain grey matter | 9.41e-07 | 34 |
gray matter | 9.41e-07 | 34 |