FFCP PHASE1:Mm9::chr11:54336354..54336363,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:54336354..54336363,+ to FFCP PHASE1:Mm9::chr11:54336354..54336363,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=192786 | |EntrezGene=192786 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=Q5NCJ0,E9Q5V5,Q5NCJ2,B2RUJ6 | |UniProt=Q5NCJ0,E9Q5V5,Q5NCJ2,B2RUJ6 | ||
|association_with_transcript=5bp_to_ENSMUST00000102743,ENSMUST00000166868,uc007ixy.1,uc007ixz.1,uc011xuv.1,uc011xuw.1_5end | |||
|cluster_id=chr11:54336354..54336363,+ | |||
|description=CAGE_peak_5_at_Rapgef6_5end | |||
|id=chr11:54336354..54336363,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.08e-07!9;CL:0000789!4.08e-07!9;CL:0002420!4.08e-07!9;CL:0002419!4.08e-07!9;CL:0000790!4.08e-07!9;CL:0000838!8.40e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.46e-14,9;CL:0000789,6.46e-14,9;CL:0002420,6.46e-14,9;CL:0002419,6.46e-14,9;CL:0000790,6.46e-14,9;CL:0000838,7.14e-14,12;CL:0002031,1.13e-13,25;CL:0000084,5.54e-13,11;CL:0000827,5.54e-13,11;CL:0000624,1.31e-12,8;CL:0000542,1.43e-12,13;CL:0000051,1.43e-12,13;CL:0000893,7.20e-10,6;CL:0002489,7.20e-10,6;CL:0000898,7.20e-10,6;CL:0000809,7.20e-10,6;CL:0000810,7.20e-10,6;CL:0000895,7.20e-10,6;CL:0000808,7.20e-10,6;CL:0000894,7.20e-10,6;CL:0000806,7.20e-10,6;CL:0000807,7.20e-10,6;CL:0000805,7.20e-10,6;CL:0002425,7.20e-10,6;CL:0002436,7.20e-10,6;CL:0002427,7.20e-10,6;CL:0002428,7.20e-10,6;CL:0002429,7.20e-10,6;CL:0002433,7.20e-10,6;CL:0002431,7.20e-10,6;CL:0002432,7.20e-10,6;CL:0000988,1.30e-09,32;CL:0002032,1.30e-09,32;CL:0000037,1.30e-09,32;CL:0000837,1.30e-09,32;CL:0000738,6.46e-09,17;CL:0002087,6.46e-09,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!5.92e-08!29;UBERON:0001004!1.47e-07!42;UBERON:0004921!3.73e-07!126;UBERON:0004185!3.73e-07!126;UBERON:0000065!3.89e-07!41;UBERON:0001007!9.28e-07!128;UBERON:0001555!9.28e-07!128;UBERON:0007026!9.28e-07!128;UBERON:0003408!9.42e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000077,5.06e-17,35;UBERON:0004177,2.77e-16,29;UBERON:0005057,2.77e-16,29;UBERON:0002193,8.22e-15,48;UBERON:0002405,8.22e-15,48;UBERON:0002390,1.13e-14,45;UBERON:0003061,1.13e-14,45;UBERON:0003408,1.67e-14,24;UBERON:0002370,1.85e-13,23;UBERON:0000974,1.85e-13,23;UBERON:0004807,1.85e-13,23;UBERON:0005058,1.85e-13,23;UBERON:0003351,1.85e-13,23;UBERON:0009113,1.85e-13,23;UBERON:0003295,1.85e-13,23;UBERON:0009722,1.85e-13,23;UBERON:0005562,1.85e-13,23;UBERON:0007690,1.85e-13,23;UBERON:0006562,1.06e-12,24;UBERON:0001557,1.06e-12,24;UBERON:0001042,1.06e-12,24;UBERON:0008814,1.06e-12,24;UBERON:0009145,1.06e-12,24;UBERON:0000072,8.94e-11,27;UBERON:0000490,3.89e-09,66;UBERON:0003929,7.00e-09,55;UBERON:0007811,4.71e-08,36;UBERON:0000926,1.17e-07,120;UBERON:0004120,1.17e-07,120;UBERON:0006603,1.17e-07,120;UBERON:0001004,4.41e-07,42 | |||
|phase1_expression=0.160148847104794,1.39590163055744,0.454999239389536,0.90739263392049,0,0.839396359559449,0,4.13194635013044,2.956563165185,3.27690336850791,1.71217968225505,2.55270908785077,4.45121897821135,4.80812213304486,1.66554880907831,2.83465374345756,0.699561878128147,1.41957974411207,2.33094537129756,2.12194825899015,0.765389611359628,0.198581902401771,1.04479915655574,0.159992422793407,0.22940928106717,0,1.29228598847722,0.430942465371778,0.570070258369122,0.504060259519861,0.443461021310609,1.90509202037889,0,0,1.73310971850765,0.997407872150954,1.02084678131185,5.4409111995798,2.3440060335714,2.61761871986899,3.52938892818609,3.41522742479223,5.82612423637384,0.251793635951155,0.405507724878058,0.367093504323363,0,0,0,0,0.279972843250725,0,1.34226084846189,2.17608642603403,2.35265659399725,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0,0,0,0.122490799214954,0.0958454710182364,0,1.10115880999389,0,0.768032666281217,0,0.0914876436024097,0.52091337055676,0,0.56276261003168,0.15279824777681,0.294628585473668,0.142371680799103,0,0.37863096666592,0.226714680320357,2.02905142091174,0.860423876981386,0,0,0,0,0,0,0.259786004602869,0,0.281686839553361,0,0,0,0.865964164044856,0.253359865475099,0.505524445014783,1.02765491747154,3.88406825470758,0.148442139064825,0.693941307064543,0.304465478312141,0.230615497256059,0.301445281105245,0.23517741427141,0.628332956648377,0,0.578397427679647,0.884610551949874,0.485300549842228,1.54589062922275,0.969750506270444,0,0,0.41889341362691,0.255457055208591,0.958520996047362,0.599902730993408,0.508280908292259,0.299581278809645,0,0.376963056338593,0.695297280769106,0,0,0,0.407357455401265,0.995255764880744,0,0,0.260240885925407,0,0.360124259610698,0.452114453507145,0.544291993210623,0.384341160854549,0.0937017245597288,0.517406741478031,0,0.189106080167819,0.527853372491847,0.219195732427575,0.556094498451196,0,0.205782136407943,0.199034266818493,0,0.51469581422943,0,0.414251545071004,1.40715635988658,0.36012412292203,0.473489471170421,0.393528463494808,0.617068451549513,0.930135779001631,0.536546802799238,0.934122738937356,0.16455984991348,0.656669856316381,0.891756905004413,0.877199924551994,1.09775057645525,0.671032093801859,0.210289948564127,0.411618449517138,0.660837565967596,0.793351699990633,0.213288250535234,0.464473343720877,1.03093969057675,0.605050573870028,0.22237804384487,0.570676878337677,0.474529061544512,0.494096864172033,0.251335208800269,0.994782360205754,0.19496408711912,0.898819408654221,0.648414149624083,0.597423819763102,0,0.685491075658373,1.1270773567308,1.22190796707189,0,0.771494018793504,0.505892296994058,0.590440591918409,0.627994911365499,0.616985819609003,0.296452627087149,1.66845105716094,0.196558995113203,1.57403478669398,0.811440485554012,0.482354319504834,0.50925170356284,0.287696137450811,0.648540907100142,0.549122826376163,0,0.372140947668503,0.624075346229121,0.252578877947112,1.07638448113147,0,0.554259570499814,1.13694847062291,0.651859905768103,0.678980343100753,0.469380496577004,0.670025029767263,0.952174563544055,0.780534591431195,0.472905432318573,0.664394068946325,0.956728611944923,0.983179888294428,0.690739927463582,0.723245292907558,0,0,0.983528546038072,0.827810238914197,0.642202359951168,0.234423373184406,0.655739781506702,0.252470927204373,0,0,0.215423397732799,0.477937595905104,1.11399337041197,0,0,0,0,0.642642632843614,0.567760340833074,0.712262414669021,0.488660878060728,0.824850614862677,0,0.242780636154981,1.51161778482376,0,0,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.632073515871632,1.05418608574999,0,0,0,0,0.214337035031592,0.177340233642274,0.535106452806212,0.329098041204242,0,0.469343416127421,0.21183207086382,1.54369878638473,0.65954501176592,0.807322133479528,0.844380948994182,0.954978752025092,0.164140899745061,2.33184669303881,0.927126510052548,2.39219233116994,0.206386867963223,0.925972636848558,2.0720530270516,2.05041341581538,1.60144721244566,0.849892149969277,1.39951452323658,0.967399816630967,0.954670618015114,0,0.406638934253697,0.648032044930808,0.627264888043406,1.31017538247707,0.674321731924103,0.247960367176008,0.785267825952089,0.777689839750757,1.86401793926078,1.12738587736838,0.149516546043979,0.330916980914195,0.972255941720238,0.516639293910924,0.168956125490778,1.17357238645754,1.3020438484395,1.57289016638566,0.966336483304024,0.288030006257865,1.89606672376907,0.405450430580328,0.205421914329655,1.03936658382236,0.716106782669926,0.79472541912506,1.68273629327956,1.9199638532695,2.01932899896295,2.89585865288999,2.01652370273681,1.75424185331554,2.50150788264857,2.45441494581295,0.226730383615211,0.221985953374065,0.62799699626633,0.503653849092235,1.35232715822533,0.375364950902364,0.36630324853453,0.857473516316263,0,0,0,0,0.343706364687375,0.685082519770642,0,0,0,0.453142408984205,0,0,0.798049746802062,0.170733605754134,0.243106717068294,0.209613162627982,0.551530525350042,0.666740183404846,0.412070114477788,0.9627576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| |phase1_expression=0.160148847104794,1.39590163055744,0.454999239389536,0.90739263392049,0,0.839396359559449,0,4.13194635013044,2.956563165185,3.27690336850791,1.71217968225505,2.55270908785077,4.45121897821135,4.80812213304486,1.66554880907831,2.83465374345756,0.699561878128147,1.41957974411207,2.33094537129756,2.12194825899015,0.765389611359628,0.198581902401771,1.04479915655574,0.159992422793407,0.22940928106717,0,1.29228598847722,0.430942465371778,0.570070258369122,0.504060259519861,0.443461021310609,1.90509202037889,0,0,1.73310971850765,0.997407872150954,1.02084678131185,5.4409111995798,2.3440060335714,2.61761871986899,3.52938892818609,3.41522742479223,5.82612423637384,0.251793635951155,0.405507724878058,0.367093504323363,0,0,0,0,0.279972843250725,0,1.34226084846189,2.17608642603403,2.35265659399725,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0.270011876663381,0,0,0,0.122490799214954,0.0958454710182364,0,1.10115880999389,0,0.768032666281217,0,0.0914876436024097,0.52091337055676,0,0.56276261003168,0.15279824777681,0.294628585473668,0.142371680799103,0,0.37863096666592,0.226714680320357,2.02905142091174,0.860423876981386,0,0,0,0,0,0,0.259786004602869,0,0.281686839553361,0,0,0,0.865964164044856,0.253359865475099,0.505524445014783,1.02765491747154,3.88406825470758,0.148442139064825,0.693941307064543,0.304465478312141,0.230615497256059,0.301445281105245,0.23517741427141,0.628332956648377,0,0.578397427679647,0.884610551949874,0.485300549842228,1.54589062922275,0.969750506270444,0,0,0.41889341362691,0.255457055208591,0.958520996047362,0.599902730993408,0.508280908292259,0.299581278809645,0,0.376963056338593,0.695297280769106,0,0,0,0.407357455401265,0.995255764880744,0,0,0.260240885925407,0,0.360124259610698,0.452114453507145,0.544291993210623,0.384341160854549,0.0937017245597288,0.517406741478031,0,0.189106080167819,0.527853372491847,0.219195732427575,0.556094498451196,0,0.205782136407943,0.199034266818493,0,0.51469581422943,0,0.414251545071004,1.40715635988658,0.36012412292203,0.473489471170421,0.393528463494808,0.617068451549513,0.930135779001631,0.536546802799238,0.934122738937356,0.16455984991348,0.656669856316381,0.891756905004413,0.877199924551994,1.09775057645525,0.671032093801859,0.210289948564127,0.411618449517138,0.660837565967596,0.793351699990633,0.213288250535234,0.464473343720877,1.03093969057675,0.605050573870028,0.22237804384487,0.570676878337677,0.474529061544512,0.494096864172033,0.251335208800269,0.994782360205754,0.19496408711912,0.898819408654221,0.648414149624083,0.597423819763102,0,0.685491075658373,1.1270773567308,1.22190796707189,0,0.771494018793504,0.505892296994058,0.590440591918409,0.627994911365499,0.616985819609003,0.296452627087149,1.66845105716094,0.196558995113203,1.57403478669398,0.811440485554012,0.482354319504834,0.50925170356284,0.287696137450811,0.648540907100142,0.549122826376163,0,0.372140947668503,0.624075346229121,0.252578877947112,1.07638448113147,0,0.554259570499814,1.13694847062291,0.651859905768103,0.678980343100753,0.469380496577004,0.670025029767263,0.952174563544055,0.780534591431195,0.472905432318573,0.664394068946325,0.956728611944923,0.983179888294428,0.690739927463582,0.723245292907558,0,0,0.983528546038072,0.827810238914197,0.642202359951168,0.234423373184406,0.655739781506702,0.252470927204373,0,0,0.215423397732799,0.477937595905104,1.11399337041197,0,0,0,0,0.642642632843614,0.567760340833074,0.712262414669021,0.488660878060728,0.824850614862677,0,0.242780636154981,1.51161778482376,0,0,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.632073515871632,1.05418608574999,0,0,0,0,0.214337035031592,0.177340233642274,0.535106452806212,0.329098041204242,0,0.469343416127421,0.21183207086382,1.54369878638473,0.65954501176592,0.807322133479528,0.844380948994182,0.954978752025092,0.164140899745061,2.33184669303881,0.927126510052548,2.39219233116994,0.206386867963223,0.925972636848558,2.0720530270516,2.05041341581538,1.60144721244566,0.849892149969277,1.39951452323658,0.967399816630967,0.954670618015114,0,0.406638934253697,0.648032044930808,0.627264888043406,1.31017538247707,0.674321731924103,0.247960367176008,0.785267825952089,0.777689839750757,1.86401793926078,1.12738587736838,0.149516546043979,0.330916980914195,0.972255941720238,0.516639293910924,0.168956125490778,1.17357238645754,1.3020438484395,1.57289016638566,0.966336483304024,0.288030006257865,1.89606672376907,0.405450430580328,0.205421914329655,1.03936658382236,0.716106782669926,0.79472541912506,1.68273629327956,1.9199638532695,2.01932899896295,2.89585865288999,2.01652370273681,1.75424185331554,2.50150788264857,2.45441494581295,0.226730383615211,0.221985953374065,0.62799699626633,0.503653849092235,1.35232715822533,0.375364950902364,0.36630324853453,0.857473516316263,0,0,0,0,0.343706364687375,0.685082519770642,0,0,0,0.453142408984205,0,0,0.798049746802062,0.170733605754134,0.243106717068294,0.209613162627982,0.551530525350042,0.666740183404846,0.412070114477788,0.9627576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| ||
|short_description=p5@Rapgef6 | |||
}} | }} |
Latest revision as of 17:02, 1 October 2015
Short description: | p5@Rapgef6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rapgef6_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 5bp_to_ENSMUST00000102743, ENSMUST00000166868, uc007ixy.1, uc007ixz.1, uc011xuv.1, uc011xuw.1_5end |
EntrezGene: | Rapgef6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mixed endoderm/mesoderm-derived structure | 5.06e-17 | 35 |
hemopoietic organ | 2.77e-16 | 29 |
immune organ | 2.77e-16 | 29 |
hemolymphoid system | 8.22e-15 | 48 |
immune system | 8.22e-15 | 48 |
hematopoietic system | 1.13e-14 | 45 |
blood island | 1.13e-14 | 45 |
gland of gut | 1.67e-14 | 24 |
thymus | 1.85e-13 | 23 |
neck | 1.85e-13 | 23 |
respiratory system epithelium | 1.85e-13 | 23 |
hemolymphoid system gland | 1.85e-13 | 23 |
pharyngeal epithelium | 1.85e-13 | 23 |
thymic region | 1.85e-13 | 23 |
pharyngeal gland | 1.85e-13 | 23 |
entire pharyngeal arch endoderm | 1.85e-13 | 23 |
thymus primordium | 1.85e-13 | 23 |
early pharyngeal endoderm | 1.85e-13 | 23 |
pharynx | 1.06e-12 | 24 |
upper respiratory tract | 1.06e-12 | 24 |
chordate pharynx | 1.06e-12 | 24 |
pharyngeal arch system | 1.06e-12 | 24 |
pharyngeal region of foregut | 1.06e-12 | 24 |
segment of respiratory tract | 8.94e-11 | 27 |
unilaminar epithelium | 3.89e-09 | 66 |
gut epithelium | 7.00e-09 | 55 |
craniocervical region | 4.71e-08 | 36 |
mesoderm | 1.17e-07 | 120 |
mesoderm-derived structure | 1.17e-07 | 120 |
presumptive mesoderm | 1.17e-07 | 120 |
respiratory system | 4.41e-07 | 42 |