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(Created page with "{{f5samples |id=FF:10188-103D8 |name=cerebral meninges, adult, biol_rep1 |sample_id=10188 |rna_tube_id=103D8 |rna_box=103 |rna_position=D8 |sample_cell_lot=NA |sample_...")
 
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{{f5samples
{{f5samples
|id=FF:10188-103D8
|DRA_sample_Accession=CAGE@SAMD00005072
|name=cerebral meninges, adult, biol_rep1
|accession_numbers=CAGE;DRX008634;DRR009506;DRZ000931;DRZ002316;DRZ012281;DRZ013666
|sample_id=10188
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002360,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000094,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0010743
|rna_tube_id=103D8
|rna_box=103
|rna_position=D8
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Biochain
|rna_lot_number=
|rna_catalog_number=R1234043-10
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=
|sample_sex=66.00000
|sample_age=M
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs12840,LSID973,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000073,UBERON:0000094,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002342,UBERON:0002346,UBERON:0002360,UBERON:0002532,UBERON:0003075,UBERON:0004120,UBERON:0004121,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010188
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010743
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 41:
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg38.nobarcode.bam
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|id=FF:10188-103D8
|is_a=EFO:0002091;;FF:0010188
|is_obsolete=
|library_id=CNhs12840
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|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10188
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10188
|name=cerebral meninges, adult
|namespace=FANTOM5
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|profile_cagescan=,,,
|profile_hcage=CNhs12840,LSID973,release012,COMPLETED
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|rna_box=103
|rna_catalog_number=R1234043-10
|rna_concentration=0.78
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=D8
|rna_rin=
|rna_sample_type=
|rna_tube_id=103D8
|rna_weight_ug=10
|sample_age=66
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=
|sample_company=Biochain
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.76196367908281e-284!GO:0005737;cytoplasm;1.47344888436497e-169!GO:0044444;cytoplasmic part;9.45378966092444e-110!GO:0043226;organelle;1.20774802452353e-91!GO:0043229;intracellular organelle;3.91931592634956e-91!GO:0043227;membrane-bound organelle;9.12407290055969e-86!GO:0043231;intracellular membrane-bound organelle;1.38294824512283e-85!GO:0005515;protein binding;2.90395691739257e-79!GO:0032991;macromolecular complex;7.75760126462176e-66!GO:0044422;organelle part;5.08179665431155e-64!GO:0044446;intracellular organelle part;4.47825781533758e-63!GO:0016043;cellular component organization and biogenesis;1.57838921591457e-49!GO:0030529;ribonucleoprotein complex;2.38835089636934e-48!GO:0005739;mitochondrion;2.45148944158006e-45!GO:0003723;RNA binding;3.15697801033671e-38!GO:0033036;macromolecule localization;6.75095390202424e-38!GO:0015031;protein transport;1.33998358256927e-37!GO:0043234;protein complex;9.94557972674315e-36!GO:0008104;protein localization;6.99854184633917e-35!GO:0031090;organelle membrane;7.25481999725288e-35!GO:0045184;establishment of protein localization;1.72381262888823e-34!GO:0044429;mitochondrial part;2.70464757746997e-33!GO:0043233;organelle lumen;3.30454537226732e-30!GO:0031974;membrane-enclosed lumen;3.30454537226732e-30!GO:0005840;ribosome;2.57045697685988e-29!GO:0005829;cytosol;3.17269634647634e-29!GO:0046907;intracellular transport;3.5071421550319e-29!GO:0051649;establishment of cellular localization;1.71504967120123e-27!GO:0051641;cellular localization;2.77230123519192e-27!GO:0016192;vesicle-mediated transport;4.40807124498438e-27!GO:0044428;nuclear part;1.41965124877768e-26!GO:0031967;organelle envelope;3.38869575575609e-26!GO:0031975;envelope;3.42984203878293e-26!GO:0003735;structural constituent of ribosome;3.04554635362787e-25!GO:0019538;protein metabolic process;8.82981337986851e-25!GO:0016071;mRNA metabolic process;3.09863324633683e-23!GO:0008380;RNA splicing;1.13444693181676e-22!GO:0006119;oxidative phosphorylation;1.48082494834671e-22!GO:0005740;mitochondrial envelope;3.85127389444558e-22!GO:0006412;translation;4.70784960486152e-22!GO:0033279;ribosomal subunit;4.81898611518159e-22!GO:0006886;intracellular protein transport;7.89881505566006e-22!GO:0006396;RNA processing;1.18795694163534e-21!GO:0031966;mitochondrial membrane;1.47520985739427e-21!GO:0044260;cellular macromolecule metabolic process;3.59571758400163e-21!GO:0031982;vesicle;5.89211871953522e-21!GO:0044267;cellular protein metabolic process;1.25586950640253e-20!GO:0031410;cytoplasmic vesicle;3.0581897808163e-20!GO:0019866;organelle inner membrane;5.81541369677584e-20!GO:0044238;primary metabolic process;6.80306154404276e-20!GO:0031988;membrane-bound vesicle;7.49868838230379e-20!GO:0006397;mRNA processing;7.85430296054512e-20!GO:0005743;mitochondrial inner membrane;1.24405329069941e-19!GO:0044237;cellular metabolic process;2.34358672726322e-19!GO:0016023;cytoplasmic membrane-bound vesicle;4.16783808318036e-19!GO:0065003;macromolecular complex assembly;5.12767490490797e-19!GO:0005794;Golgi apparatus;2.80737600889234e-18!GO:0043170;macromolecule metabolic process;2.8759871714989e-18!GO:0044455;mitochondrial membrane part;9.24075200885651e-18!GO:0006996;organelle organization and biogenesis;1.37971537342692e-17!GO:0022607;cellular component assembly;1.79188818719378e-17!GO:0005634;nucleus;4.90756657841536e-17!GO:0005746;mitochondrial respiratory chain;5.31072098338884e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.56802522856015e-16!GO:0009058;biosynthetic process;2.70256845860127e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.37632538593033e-16!GO:0044445;cytosolic part;1.05725817444164e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.09255323362273e-15!GO:0003954;NADH dehydrogenase activity;1.09255323362273e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.09255323362273e-15!GO:0005681;spliceosome;1.10069957245933e-15!GO:0048770;pigment granule;1.22038446019875e-15!GO:0042470;melanosome;1.22038446019875e-15!GO:0044249;cellular biosynthetic process;2.4114480905166e-15!GO:0031981;nuclear lumen;4.44906845389636e-15!GO:0009059;macromolecule biosynthetic process;5.21117919637372e-15!GO:0006457;protein folding;1.47387287104113e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.62557234819122e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.74519714651568e-14!GO:0016462;pyrophosphatase activity;3.53396422662433e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;4.07932289338284e-14!GO:0031980;mitochondrial lumen;6.858126995725e-14!GO:0005759;mitochondrial matrix;6.858126995725e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.01741534103573e-13!GO:0045271;respiratory chain complex I;1.01741534103573e-13!GO:0005747;mitochondrial respiratory chain complex I;1.01741534103573e-13!GO:0017111;nucleoside-triphosphatase activity;1.5248513755065e-13!GO:0003924;GTPase activity;3.44152755885942e-13!GO:0045045;secretory pathway;3.53527582525835e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.59743063458995e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.93293766823761e-13!GO:0042773;ATP synthesis coupled electron transport;3.93293766823761e-13!GO:0000166;nucleotide binding;3.97007160237274e-13!GO:0006810;transport;7.75664668161176e-13!GO:0012505;endomembrane system;1.05931232752571e-12!GO:0022618;protein-RNA complex assembly;1.69723588178174e-12!GO:0015935;small ribosomal subunit;2.33232868647733e-12!GO:0006512;ubiquitin cycle;4.35452785060325e-12!GO:0051082;unfolded protein binding;9.36631308970679e-12!GO:0051179;localization;1.65601297710166e-11!GO:0043228;non-membrane-bound organelle;1.77785091821635e-11!GO:0043232;intracellular non-membrane-bound organelle;1.77785091821635e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.08217372656023e-11!GO:0019829;cation-transporting ATPase activity;5.56091457203226e-11!GO:0048193;Golgi vesicle transport;7.57640160579708e-11!GO:0030135;coated vesicle;9.68171603354758e-11!GO:0008092;cytoskeletal protein binding;1.01431501487505e-10!GO:0008135;translation factor activity, nucleic acid binding;1.01431501487505e-10!GO:0015934;large ribosomal subunit;1.07397512325548e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24937276612256e-10!GO:0007264;small GTPase mediated signal transduction;1.43126300706627e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.30971281698516e-10!GO:0051234;establishment of localization;2.91521396598214e-10!GO:0006605;protein targeting;3.11811064844255e-10!GO:0032553;ribonucleotide binding;3.31342394261646e-10!GO:0032555;purine ribonucleotide binding;3.31342394261646e-10!GO:0005525;GTP binding;3.47759627952169e-10!GO:0008134;transcription factor binding;6.83017855751159e-10!GO:0043687;post-translational protein modification;9.10764346694819e-10!GO:0043412;biopolymer modification;1.51417849444218e-09!GO:0032561;guanyl ribonucleotide binding;1.81388558211184e-09!GO:0019001;guanyl nucleotide binding;1.81388558211184e-09!GO:0016874;ligase activity;1.99291690434064e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.02558676124516e-09!GO:0017076;purine nucleotide binding;2.46308637561817e-09!GO:0006464;protein modification process;2.47136243839076e-09!GO:0005768;endosome;2.88898800344869e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.28196584704844e-09!GO:0019941;modification-dependent protein catabolic process;3.45019652595323e-09!GO:0043632;modification-dependent macromolecule catabolic process;3.45019652595323e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.66609256326986e-09!GO:0007399;nervous system development;4.37560267825257e-09!GO:0044257;cellular protein catabolic process;5.00014941322898e-09!GO:0032940;secretion by cell;5.31668596736678e-09!GO:0005783;endoplasmic reticulum;6.27549334216116e-09!GO:0016044;membrane organization and biogenesis;6.73228137624803e-09!GO:0005761;mitochondrial ribosome;6.76754468539754e-09!GO:0000313;organellar ribosome;6.76754468539754e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.21823694076228e-09!GO:0008565;protein transporter activity;9.29317081797136e-09!GO:0006793;phosphorus metabolic process;1.03502662553753e-08!GO:0006796;phosphate metabolic process;1.03502662553753e-08!GO:0005654;nucleoplasm;1.10053345566135e-08!GO:0015986;ATP synthesis coupled proton transport;1.18880305044468e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18880305044468e-08!GO:0043005;neuron projection;1.45560936637182e-08!GO:0048523;negative regulation of cellular process;1.82359136997373e-08!GO:0051186;cofactor metabolic process;1.82359136997373e-08!GO:0044265;cellular macromolecule catabolic process;1.89338289103937e-08!GO:0044431;Golgi apparatus part;2.16395045688966e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.24415585418299e-08!GO:0006413;translational initiation;6.41757755453599e-08!GO:0007010;cytoskeleton organization and biogenesis;7.72290452662035e-08!GO:0043283;biopolymer metabolic process;7.7475638352569e-08!GO:0044451;nucleoplasm part;8.14788986552524e-08!GO:0009055;electron carrier activity;8.48985733585179e-08!GO:0006446;regulation of translational initiation;9.16973549581063e-08!GO:0006461;protein complex assembly;1.07274889294925e-07!GO:0003743;translation initiation factor activity;1.11752164009678e-07!GO:0030136;clathrin-coated vesicle;1.29919397150227e-07!GO:0030163;protein catabolic process;1.69455850927653e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.77621486227873e-07!GO:0046034;ATP metabolic process;1.86034989363943e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.21266521095001e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.21266521095001e-07!GO:0048519;negative regulation of biological process;2.40453694481871e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.43734134531765e-07!GO:0000375;RNA splicing, via transesterification reactions;2.43734134531765e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.43734134531765e-07!GO:0019717;synaptosome;2.48291784301165e-07!GO:0043285;biopolymer catabolic process;2.76452284280226e-07!GO:0009141;nucleoside triphosphate metabolic process;3.07241935846065e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.29060595522133e-07!GO:0044248;cellular catabolic process;3.29060595522133e-07!GO:0008639;small protein conjugating enzyme activity;3.47224761576446e-07!GO:0009060;aerobic respiration;4.3566735770603e-07!GO:0006754;ATP biosynthetic process;5.02303944428699e-07!GO:0006753;nucleoside phosphate metabolic process;5.02303944428699e-07!GO:0048471;perinuclear region of cytoplasm;5.09126843804521e-07!GO:0010467;gene expression;5.64657089481945e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.79213456270745e-07!GO:0006913;nucleocytoplasmic transport;5.85722444063789e-07!GO:0004842;ubiquitin-protein ligase activity;6.64380356498025e-07!GO:0045333;cellular respiration;7.60976069511795e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.89930100699054e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.89930100699054e-07!GO:0051169;nuclear transport;8.81698933199188e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.03099678676855e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.26488059310158e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.26488059310158e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.38005542974823e-06!GO:0009150;purine ribonucleotide metabolic process;1.38822353026017e-06!GO:0030029;actin filament-based process;1.41074886907395e-06!GO:0006163;purine nucleotide metabolic process;1.65523302376848e-06!GO:0005730;nucleolus;1.74720884632637e-06!GO:0009057;macromolecule catabolic process;1.80124297837209e-06!GO:0019787;small conjugating protein ligase activity;2.00496616590858e-06!GO:0003779;actin binding;2.17425109859403e-06!GO:0016310;phosphorylation;2.47525229567316e-06!GO:0031252;leading edge;2.55885838246542e-06!GO:0008287;protein serine/threonine phosphatase complex;2.55885838246542e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.62527731028838e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.66742739609291e-06!GO:0000139;Golgi membrane;2.68443350654395e-06!GO:0005083;small GTPase regulator activity;2.89013371269343e-06!GO:0006164;purine nucleotide biosynthetic process;3.23018491539389e-06!GO:0030695;GTPase regulator activity;3.23018491539389e-06!GO:0016604;nuclear body;3.23018491539389e-06!GO:0017038;protein import;3.58940294402067e-06!GO:0006732;coenzyme metabolic process;3.6227993244105e-06!GO:0000902;cell morphogenesis;3.79232958143336e-06!GO:0032989;cellular structure morphogenesis;3.79232958143336e-06!GO:0009259;ribonucleotide metabolic process;4.09423839306763e-06!GO:0006897;endocytosis;5.11467945145324e-06!GO:0010324;membrane invagination;5.11467945145324e-06!GO:0007242;intracellular signaling cascade;5.15203494125357e-06!GO:0019226;transmission of nerve impulse;6.32040386886222e-06!GO:0031965;nuclear membrane;7.04809260711985e-06!GO:0044440;endosomal part;7.91020119205092e-06!GO:0010008;endosome membrane;7.91020119205092e-06!GO:0048475;coated membrane;7.98248747736977e-06!GO:0030117;membrane coat;7.98248747736977e-06!GO:0006099;tricarboxylic acid cycle;8.3352161748825e-06!GO:0046356;acetyl-CoA catabolic process;8.3352161748825e-06!GO:0005905;coated pit;1.00682732572474e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.12326016077252e-05!GO:0045259;proton-transporting ATP synthase complex;1.14049795667777e-05!GO:0009260;ribonucleotide biosynthetic process;1.1744030632517e-05!GO:0048489;synaptic vesicle transport;1.32618194679207e-05!GO:0016607;nuclear speck;1.66261487065958e-05!GO:0019899;enzyme binding;1.83904072563066e-05!GO:0015631;tubulin binding;1.91306259841108e-05!GO:0005635;nuclear envelope;1.93931010092707e-05!GO:0009109;coenzyme catabolic process;2.17416322740208e-05!GO:0030120;vesicle coat;2.52628992382576e-05!GO:0030662;coated vesicle membrane;2.52628992382576e-05!GO:0005770;late endosome;3.38867630674753e-05!GO:0051187;cofactor catabolic process;3.40832603613781e-05!GO:0007269;neurotransmitter secretion;3.40832603613781e-05!GO:0032446;protein modification by small protein conjugation;3.88311443957854e-05!GO:0003712;transcription cofactor activity;3.88311443957854e-05!GO:0005769;early endosome;3.95163476702695e-05!GO:0000245;spliceosome assembly;4.04162538963022e-05!GO:0016881;acid-amino acid ligase activity;4.04162538963022e-05!GO:0006084;acetyl-CoA metabolic process;4.12872822681902e-05!GO:0030425;dendrite;4.16666408184591e-05!GO:0015630;microtubule cytoskeleton;5.66315909011137e-05!GO:0016567;protein ubiquitination;5.91103530446962e-05!GO:0005798;Golgi-associated vesicle;6.38461626291911e-05!GO:0044432;endoplasmic reticulum part;6.68629113190334e-05!GO:0001505;regulation of neurotransmitter levels;7.27698196707969e-05!GO:0008021;synaptic vesicle;8.17737906528138e-05!GO:0005793;ER-Golgi intermediate compartment;8.59214419872537e-05!GO:0007268;synaptic transmission;0.000106728202195758!GO:0003714;transcription corepressor activity;0.000114809684047055!GO:0019208;phosphatase regulator activity;0.000135972339531203!GO:0032559;adenyl ribonucleotide binding;0.000135972339531203!GO:0051246;regulation of protein metabolic process;0.00014707606318403!GO:0045786;negative regulation of progression through cell cycle;0.000149356902708997!GO:0045055;regulated secretory pathway;0.000159017113908132!GO:0030427;site of polarized growth;0.000161829901112933!GO:0031072;heat shock protein binding;0.000165353297606352!GO:0008047;enzyme activator activity;0.000167838723267234!GO:0051128;regulation of cellular component organization and biogenesis;0.000186421319118636!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000198371717219801!GO:0030426;growth cone;0.000202770539350402!GO:0016564;transcription repressor activity;0.000210387576380102!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000238142019577548!GO:0042623;ATPase activity, coupled;0.000246932669819242!GO:0030133;transport vesicle;0.000278500512851758!GO:0005524;ATP binding;0.000292698269498969!GO:0015980;energy derivation by oxidation of organic compounds;0.000298389850030898!GO:0006613;cotranslational protein targeting to membrane;0.000313317262525793!GO:0006888;ER to Golgi vesicle-mediated transport;0.000314928752874788!GO:0048468;cell development;0.000324130157341561!GO:0030532;small nuclear ribonucleoprotein complex;0.000335417240096172!GO:0005516;calmodulin binding;0.000337203111857661!GO:0008219;cell death;0.000352064137085505!GO:0016265;death;0.000352064137085505!GO:0008361;regulation of cell size;0.000370253672798054!GO:0005874;microtubule;0.000379228667889349!GO:0016887;ATPase activity;0.000391399424739809!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000399766447357959!GO:0012501;programmed cell death;0.000408325834537789!GO:0019888;protein phosphatase regulator activity;0.000408483602523591!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000408483602523591!GO:0030027;lamellipodium;0.000488578296408935!GO:0006606;protein import into nucleus;0.000504529834102412!GO:0007265;Ras protein signal transduction;0.000526092463679665!GO:0006752;group transfer coenzyme metabolic process;0.000548303164283728!GO:0030554;adenyl nucleotide binding;0.000548303164283728!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00058464432607059!GO:0006916;anti-apoptosis;0.000589251521936275!GO:0003729;mRNA binding;0.000615010396141531!GO:0006915;apoptosis;0.000634118489956281!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000634118489956281!GO:0016049;cell growth;0.000676619614424346!GO:0051170;nuclear import;0.0006823320587466!GO:0016311;dephosphorylation;0.000789547728953986!GO:0005789;endoplasmic reticulum membrane;0.000810306992103602!GO:0000159;protein phosphatase type 2A complex;0.00081166566854789!GO:0044453;nuclear membrane part;0.000887428238887359!GO:0033673;negative regulation of kinase activity;0.00092322837266872!GO:0006469;negative regulation of protein kinase activity;0.00092322837266872!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000964490186945709!GO:0015399;primary active transmembrane transporter activity;0.000964490186945709!GO:0009056;catabolic process;0.000978498651979884!GO:0004721;phosphoprotein phosphatase activity;0.0009799978846332!GO:0043566;structure-specific DNA binding;0.000996306551311356!GO:0005643;nuclear pore;0.00100634638210096!GO:0005773;vacuole;0.00103057260513906!GO:0009966;regulation of signal transduction;0.00109500012919521!GO:0042254;ribosome biogenesis and assembly;0.0011431371469723!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00114427267906974!GO:0008017;microtubule binding;0.00120072867473122!GO:0005839;proteasome core complex (sensu Eukaryota);0.0012253934209065!GO:0008601;protein phosphatase type 2A regulator activity;0.00133371867424469!GO:0030118;clathrin coat;0.00136960982098152!GO:0006323;DNA packaging;0.0013938300361119!GO:0022406;membrane docking;0.00139476796262881!GO:0048278;vesicle docking;0.00139476796262881!GO:0000151;ubiquitin ligase complex;0.00142267399810866!GO:0005741;mitochondrial outer membrane;0.00143297695242276!GO:0048167;regulation of synaptic plasticity;0.00163211281360597!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00163211281360597!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00163211281360597!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00163211281360597!GO:0051188;cofactor biosynthetic process;0.00163211281360597!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00164944721702795!GO:0004722;protein serine/threonine phosphatase activity;0.00170674279219948!GO:0009892;negative regulation of metabolic process;0.00185433192400099!GO:0006470;protein amino acid dephosphorylation;0.00185580949219491!GO:0051087;chaperone binding;0.00185600824777089!GO:0012506;vesicle membrane;0.00185600824777089!GO:0006403;RNA localization;0.0018756941883648!GO:0003697;single-stranded DNA binding;0.0019156710297276!GO:0043069;negative regulation of programmed cell death;0.0019156710297276!GO:0051789;response to protein stimulus;0.0019171653965534!GO:0006986;response to unfolded protein;0.0019171653965534!GO:0005048;signal sequence binding;0.00192606040830371!GO:0043492;ATPase activity, coupled to movement of substances;0.00194050954162373!GO:0006904;vesicle docking during exocytosis;0.00205656866920859!GO:0043623;cellular protein complex assembly;0.00212674796877441!GO:0030054;cell junction;0.00215075389162603!GO:0006333;chromatin assembly or disassembly;0.00215161972908196!GO:0050657;nucleic acid transport;0.00222966937652691!GO:0051236;establishment of RNA localization;0.00222966937652691!GO:0050658;RNA transport;0.00222966937652691!GO:0005762;mitochondrial large ribosomal subunit;0.00235462766810545!GO:0000315;organellar large ribosomal subunit;0.00235462766810545!GO:0031968;organelle outer membrane;0.00238185117154841!GO:0048699;generation of neurons;0.00238185117154841!GO:0008154;actin polymerization and/or depolymerization;0.00243084681782793!GO:0001558;regulation of cell growth;0.00243084681782793!GO:0019867;outer membrane;0.00247846600345321!GO:0003724;RNA helicase activity;0.0025661327966411!GO:0008654;phospholipid biosynthetic process;0.00257016987207724!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00262081336763157!GO:0051348;negative regulation of transferase activity;0.00269793141198128!GO:0043066;negative regulation of apoptosis;0.00281603444326647!GO:0016791;phosphoric monoester hydrolase activity;0.00281603444326647!GO:0050803;regulation of synapse structure and activity;0.00281684286483156!GO:0016197;endosome transport;0.00284144229812834!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00297061887440796!GO:0022008;neurogenesis;0.003009414969441!GO:0043681;protein import into mitochondrion;0.00308088528253178!GO:0019887;protein kinase regulator activity;0.00308089034284597!GO:0003746;translation elongation factor activity;0.00308089034284597!GO:0050767;regulation of neurogenesis;0.00325538770887409!GO:0000314;organellar small ribosomal subunit;0.00327880135407404!GO:0005763;mitochondrial small ribosomal subunit;0.00327880135407404!GO:0008139;nuclear localization sequence binding;0.00343763719566343!GO:0005938;cell cortex;0.00372132168155447!GO:0007019;microtubule depolymerization;0.00373075912198019!GO:0008026;ATP-dependent helicase activity;0.00378370775056282!GO:0016301;kinase activity;0.00381361147004842!GO:0019843;rRNA binding;0.00381828469719942!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00384705946753172!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00384705946753172!GO:0004812;aminoacyl-tRNA ligase activity;0.00384705946753172!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00384705946753172!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00392685640106269!GO:0005096;GTPase activator activity;0.00392685640106269!GO:0006414;translational elongation;0.00394850868746127!GO:0043021;ribonucleoprotein binding;0.00395990533108621!GO:0006366;transcription from RNA polymerase II promoter;0.00402910150777071!GO:0048487;beta-tubulin binding;0.00402910150777071!GO:0044433;cytoplasmic vesicle part;0.00411567483043082!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00414525104788559!GO:0004667;prostaglandin-D synthase activity;0.00414525104788559!GO:0050802;circadian sleep/wake cycle, sleep;0.00414525104788559!GO:0022410;circadian sleep/wake cycle process;0.00414525104788559!GO:0042749;regulation of circadian sleep/wake cycle;0.00414525104788559!GO:0030182;neuron differentiation;0.00446682377236832!GO:0019902;phosphatase binding;0.0045009215080427!GO:0004298;threonine endopeptidase activity;0.00452228312839778!GO:0016050;vesicle organization and biogenesis;0.00472747740367155!GO:0005869;dynactin complex;0.0052522105028749!GO:0043407;negative regulation of MAP kinase activity;0.00534743753172885!GO:0019904;protein domain specific binding;0.00542250834517144!GO:0043209;myelin sheath;0.00599908561631148!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00599908561631148!GO:0006892;post-Golgi vesicle-mediated transport;0.00611471449971937!GO:0030424;axon;0.00612366253073603!GO:0051920;peroxiredoxin activity;0.00618537989207538!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00620728070090864!GO:0043086;negative regulation of catalytic activity;0.00672810513755779!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00678297919537676!GO:0001726;ruffle;0.006893157668808!GO:0016859;cis-trans isomerase activity;0.00695795072112537!GO:0043038;amino acid activation;0.00715182767529252!GO:0006418;tRNA aminoacylation for protein translation;0.00715182767529252!GO:0043039;tRNA aminoacylation;0.00715182767529252!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00720782744017127!GO:0000323;lytic vacuole;0.00736317513703746!GO:0005764;lysosome;0.00736317513703746!GO:0031902;late endosome membrane;0.00738795377850319!GO:0006891;intra-Golgi vesicle-mediated transport;0.00738795377850319!GO:0009108;coenzyme biosynthetic process;0.00762162407819013!GO:0046467;membrane lipid biosynthetic process;0.00764967169282351!GO:0005885;Arp2/3 protein complex;0.00768177142347174!GO:0031901;early endosome membrane;0.00771106695320398!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00840467101496373!GO:0006612;protein targeting to membrane;0.00843984053231101!GO:0006607;NLS-bearing substrate import into nucleus;0.00864826951224729!GO:0050811;GABA receptor binding;0.00875595069175904!GO:0051056;regulation of small GTPase mediated signal transduction;0.00883308273565132!GO:0019207;kinase regulator activity;0.00886648912646509!GO:0004674;protein serine/threonine kinase activity;0.00886648912646509!GO:0065002;intracellular protein transport across a membrane;0.00896045317933323!GO:0046488;phosphatidylinositol metabolic process;0.00899859600564808!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0091412066018671!GO:0055083;monovalent inorganic anion homeostasis;0.0091412066018671!GO:0055064;chloride ion homeostasis;0.0091412066018671!GO:0030644;cellular chloride ion homeostasis;0.0091412066018671!GO:0031324;negative regulation of cellular metabolic process;0.00927752635391732!GO:0005791;rough endoplasmic reticulum;0.0102148575868607!GO:0009117;nucleotide metabolic process;0.0105218426402133!GO:0030132;clathrin coat of coated pit;0.0105532453499903!GO:0006887;exocytosis;0.0111234524267746!GO:0031114;regulation of microtubule depolymerization;0.0111234524267746!GO:0007026;negative regulation of microtubule depolymerization;0.0111234524267746!GO:0030041;actin filament polymerization;0.0111234524267746!GO:0030660;Golgi-associated vesicle membrane;0.0112761510693027!GO:0030659;cytoplasmic vesicle membrane;0.0114696234402461!GO:0016568;chromatin modification;0.0114795394927883!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0117115500393183!GO:0050839;cell adhesion molecule binding;0.0117169490988196!GO:0016481;negative regulation of transcription;0.0117739338864475!GO:0016126;sterol biosynthetic process;0.0117739338864475!GO:0030125;clathrin vesicle coat;0.0117739338864475!GO:0030665;clathrin coated vesicle membrane;0.0117739338864475!GO:0007050;cell cycle arrest;0.0117943848166169!GO:0006364;rRNA processing;0.0119260353393873!GO:0006259;DNA metabolic process;0.0119345087230215!GO:0030137;COPI-coated vesicle;0.0120543976954885!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121173798432833!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121173798432833!GO:0051287;NAD binding;0.0127092244384253!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0127214769767102!GO:0044448;cell cortex part;0.0127274712091545!GO:0006402;mRNA catabolic process;0.0128007886288581!GO:0007272;ensheathment of neurons;0.0134970878890955!GO:0008366;axon ensheathment;0.0134970878890955!GO:0065009;regulation of a molecular function;0.0138342647930054!GO:0051261;protein depolymerization;0.0141588868096607!GO:0030742;GTP-dependent protein binding;0.0142953519717376!GO:0051427;hormone receptor binding;0.0143165970382637!GO:0001578;microtubule bundle formation;0.0145994093369638!GO:0008186;RNA-dependent ATPase activity;0.0147288993785031!GO:0005092;GDP-dissociation inhibitor activity;0.0149880681187815!GO:0051726;regulation of cell cycle;0.0150816963687498!GO:0030030;cell projection organization and biogenesis;0.0152021438537841!GO:0048858;cell projection morphogenesis;0.0152021438537841!GO:0032990;cell part morphogenesis;0.0152021438537841!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0153580515514516!GO:0015629;actin cytoskeleton;0.0154566877818148!GO:0030867;rough endoplasmic reticulum membrane;0.0154566877818148!GO:0048500;signal recognition particle;0.0154566877818148!GO:0032011;ARF protein signal transduction;0.0154566877818148!GO:0032012;regulation of ARF protein signal transduction;0.0154566877818148!GO:0001666;response to hypoxia;0.0162362736781666!GO:0007266;Rho protein signal transduction;0.0163615337476782!GO:0005875;microtubule associated complex;0.0164310034136465!GO:0008180;signalosome;0.0165125996762389!GO:0006650;glycerophospholipid metabolic process;0.0167593456926595!GO:0008286;insulin receptor signaling pathway;0.0167593456926595!GO:0030658;transport vesicle membrane;0.0167593456926595!GO:0008250;oligosaccharyl transferase complex;0.0169492852864713!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0175395724822163!GO:0042995;cell projection;0.0178573894759217!GO:0004386;helicase activity;0.0178573894759217!GO:0050789;regulation of biological process;0.0180875357387385!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0183158386949448!GO:0015002;heme-copper terminal oxidase activity;0.0183158386949448!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0183158386949448!GO:0004129;cytochrome-c oxidase activity;0.0183158386949448!GO:0051168;nuclear export;0.0183898682152304!GO:0005868;cytoplasmic dynein complex;0.0183898682152304!GO:0007243;protein kinase cascade;0.0186086890407383!GO:0051028;mRNA transport;0.0192116606500719!GO:0000188;inactivation of MAPK activity;0.0203602011153121!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0210182599407591!GO:0019198;transmembrane receptor protein phosphatase activity;0.0210182599407591!GO:0051540;metal cluster binding;0.0212647044130748!GO:0051536;iron-sulfur cluster binding;0.0212647044130748!GO:0007005;mitochondrion organization and biogenesis;0.0212994283391258!GO:0000074;regulation of progression through cell cycle;0.0213819502700187!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0216472780903536!GO:0048154;S100 beta binding;0.021680813557438!GO:0016072;rRNA metabolic process;0.0217722919275863!GO:0040008;regulation of growth;0.0221977801447803!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0231964139512884!GO:0006091;generation of precursor metabolites and energy;0.0231980676691289!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0232688312645687!GO:0035035;histone acetyltransferase binding;0.0234424461298417!GO:0016272;prefoldin complex;0.0237202246090923!GO:0019903;protein phosphatase binding;0.023871024924934!GO:0035257;nuclear hormone receptor binding;0.023871024924934!GO:0000062;acyl-CoA binding;0.024062233047922!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0243323056636684!GO:0033043;regulation of organelle organization and biogenesis;0.0243323056636684!GO:0016079;synaptic vesicle exocytosis;0.0243395624272975!GO:0046578;regulation of Ras protein signal transduction;0.02443438347782!GO:0007049;cell cycle;0.0247012085842279!GO:0048666;neuron development;0.0248036424494093!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0251344057020691!GO:0048488;synaptic vesicle endocytosis;0.025615727543181!GO:0004683;calmodulin-dependent protein kinase activity;0.0258709315602705!GO:0006818;hydrogen transport;0.0260096782289305!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0261596711718625!GO:0005862;muscle thin filament tropomyosin;0.0262221692770629!GO:0045892;negative regulation of transcription, DNA-dependent;0.0266209588111954!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0267872232216468!GO:0043488;regulation of mRNA stability;0.0270951039584666!GO:0043487;regulation of RNA stability;0.0270951039584666!GO:0050749;apolipoprotein E receptor binding;0.0277395852304573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.028854620051808!GO:0046930;pore complex;0.029544480017465!GO:0042578;phosphoric ester hydrolase activity;0.0296419417976122!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0298322532881475!GO:0048168;regulation of neuronal synaptic plasticity;0.0298589688317438!GO:0045454;cell redox homeostasis;0.0298962329964514!GO:0007611;learning and/or memory;0.031420938536464!GO:0050750;low-density lipoprotein receptor binding;0.0314493032419424!GO:0004576;oligosaccharyl transferase activity;0.0316045670117643!GO:0008088;axon cargo transport;0.0322229972255475!GO:0042802;identical protein binding;0.0322229972255475!GO:0031371;ubiquitin conjugating enzyme complex;0.0322229972255475!GO:0051252;regulation of RNA metabolic process;0.0325250313263088!GO:0016584;nucleosome positioning;0.0327713484491415!GO:0045296;cadherin binding;0.0328053217778697!GO:0004004;ATP-dependent RNA helicase activity;0.0332232675456703!GO:0007017;microtubule-based process;0.0338401795106383!GO:0030384;phosphoinositide metabolic process;0.0342730180108437!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0347155776142685!GO:0045047;protein targeting to ER;0.0347155776142685!GO:0015992;proton transport;0.035769337277183!GO:0006376;mRNA splice site selection;0.035769337277183!GO:0000389;nuclear mRNA 3'-splice site recognition;0.035769337277183!GO:0030663;COPI coated vesicle membrane;0.035769337277183!GO:0030126;COPI vesicle coat;0.035769337277183!GO:0065004;protein-DNA complex assembly;0.0362577912342727!GO:0009165;nucleotide biosynthetic process;0.0363018129880235!GO:0006595;polyamine metabolic process;0.0366020482108256!GO:0001508;regulation of action potential;0.0369086057500948!GO:0003713;transcription coactivator activity;0.0370406724282579!GO:0030911;TPR domain binding;0.037064281411136!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0371689833242573!GO:0006695;cholesterol biosynthetic process;0.0377247828296014!GO:0000904;cellular morphogenesis during differentiation;0.0377354645195488!GO:0007006;mitochondrial membrane organization and biogenesis;0.0388321101336065!GO:0005100;Rho GTPase activator activity;0.0390678167672556!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0391454553348049!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0397600857416928!GO:0043025;cell soma;0.0399191940263268!GO:0005774;vacuolar membrane;0.0407902013622887!GO:0006661;phosphatidylinositol biosynthetic process;0.0414951110888841!GO:0005813;centrosome;0.0422538403355387!GO:0043284;biopolymer biosynthetic process;0.0422538403355387!GO:0005085;guanyl-nucleotide exchange factor activity;0.043673690948488!GO:0035258;steroid hormone receptor binding;0.0438486139137562!GO:0031109;microtubule polymerization or depolymerization;0.0450337391923705!GO:0004860;protein kinase inhibitor activity;0.045476351029774!GO:0030641;cellular hydrogen ion homeostasis;0.0456181337777216!GO:0042026;protein refolding;0.0456573577878133!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0459515622234217!GO:0019894;kinesin binding;0.0471082593372024!GO:0046903;secretion;0.0476345480809762!GO:0008312;7S RNA binding;0.0487756584618467!GO:0031124;mRNA 3'-end processing;0.0487756584618467!GO:0003711;transcription elongation regulator activity;0.0487756584618467!GO:0001516;prostaglandin biosynthetic process;0.0487756584618467!GO:0046457;prostanoid biosynthetic process;0.0487756584618467!GO:0008429;phosphatidylethanolamine binding;0.0487756584618467!GO:0006665;sphingolipid metabolic process;0.0493195698733798
|sample_id=10188
|sample_note=
|sample_sex=M
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=EGR1..3:3.99735320905;REST:3.84288814956;NHLH1,2:3.60133139598;MTF1:3.49709746857;ZBTB6:3.31412075514;MTE{core}:3.28229042754;MYFfamily:3.27563510648;PAX6:3.14814860949;ATF2:3.09584997157;RFX1:3.08761322366;MED-1{core}:3.04645805316;CRX:3.04386752917;ZFP161:3.02361829265;PRRX1,2:2.92112586042;TFAP2B:2.88082505628;CUX2:2.68117262567;DBP:2.58220919638;MAZ:2.51517539487;GTF2I:2.5103323456;PAX5:2.4673784908;SOX5:2.44958485417;RFX2..5_RFXANK_RFXAP:2.43182928688;HOXA9_MEIS1:2.43030665794;MZF1:2.35609425064;HBP1_HMGB_SSRP1_UBTF:2.32678012716;OCT4_SOX2{dimer}:2.32414012203;POU5F1:2.28556813523;AHR_ARNT_ARNT2:2.22230741293;PRDM1:2.21962675101;HIC1:2.20195897216;BREu{core}:2.13264058509;HMGA1,2:2.09297882869;PATZ1:2.09266758189;POU6F1:2.06118384693;JUN:2.00173007963;CDC5L:1.94338498535;NFIL3:1.91056835058;SMAD1..7,9:1.89453599829;GCM1,2:1.88946564307;MAFB:1.87120069557;TFDP1:1.84835129412;NKX3-2:1.83940028413;GFI1B:1.8307092402;ADNP_IRX_SIX_ZHX:1.77027852825;HOX{A4,D4}:1.75365047109;ZNF423:1.72503062637;KLF4:1.69391165763;XBP1:1.65678798663;RBPJ:1.6560215177;MYOD1:1.6522574009;LMO2:1.58607984959;SOX2:1.58027915511;TGIF1:1.54712047101;FOXM1:1.53687234667;VSX1,2:1.53138256216;NKX2-3_NKX2-5:1.52195339371;RREB1:1.50536383037;POU3F1..4:1.44004016738;NKX6-1,2:1.43355179471;HAND1,2:1.41319269192;IKZF2:1.35648496622;EBF1:1.34454003445;EP300:1.30077453643;NFIX:1.27117303163;ATF4:1.26003643802;SOX17:1.24278207991;FOXL1:1.20362856892;MYBL2:1.15610363632;RORA:1.15192203311;T:1.11616870858;LEF1_TCF7_TCF7L1,2:1.09599021215;ZIC1..3:1.09212297731;ARID5B:1.07857108949;MEF2{A,B,C,D}:1.0717431446;NRF1:1.04089966213;SP1:1.02033408934;ESRRA:1.01651521836;ONECUT1,2:1.01379831118;TFAP2{A,C}:1.00957966646;GATA4:0.99528303477;FOXD3:0.960021264575;GTF2A1,2:0.948472420868;ZEB1:0.932508839927;FOX{F1,F2,J1}:0.896768100292;FOXQ1:0.895194895153;HMX1:0.890631785202;ALX1:0.890028962175;SOX{8,9,10}:0.874082457643;ZNF238:0.87266186287;CREB1:0.865809622614;ATF5_CREB3:0.846979886557;TEF:0.838458701772;AR:0.819383412614;XCPE1{core}:0.76092232384;ZNF384:0.751300671848;FOXP3:0.742840815444;IKZF1:0.679769909586;PAX1,9:0.607129081116;TLX2:0.592149939175;TLX1..3_NFIC{dimer}:0.577450165952;NANOG:0.572213613465;ATF6:0.558964546906;TBX4,5:0.53542747587;HSF1,2:0.50630260617;SREBF1,2:0.421913187494;NR3C1:0.411856601182;TFAP4:0.361293777003;FOXA2:0.342401218485;BPTF:0.330401394212;FOX{D1,D2}:0.329571558665;HOX{A6,A7,B6,B7}:0.32571505127;ZNF143:0.312826628556;TBP:0.291748434659;NFATC1..3:0.286961838389;GFI1:0.274309045921;bHLH_family:0.257448182438;FOXN1:0.236006875998;GZF1:0.233974823018;UFEwm:0.165524823931;PAX2:0.164014734965;STAT2,4,6:0.14520963726;YY1:0.121075540183;NFE2L1:0.101497651597;PAX3,7:0.0745813140975;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0465214593472;PDX1:0.0323862590226;SNAI1..3:0.0277994150484;SPZ1:-0.0149406447666;NFE2L2:-0.0338512851241;FOXP1:-0.0705642346819;ZNF148:-0.0776246690496;SRF:-0.131175447669;STAT1,3:-0.160287495096;NANOG{mouse}:-0.183235315741;LHX3,4:-0.192607944447;NFY{A,B,C}:-0.210073415816;IRF7:-0.236508788059;TFCP2:-0.26863609448;ESR1:-0.274084986168;DMAP1_NCOR{1,2}_SMARC:-0.282872906537;CEBPA,B_DDIT3:-0.353399651005;FOX{I1,J2}:-0.368346121256;PAX4:-0.38227461785;HNF1A:-0.407350191078;GATA6:-0.41123283935;IRF1,2:-0.417023116023;SPI1:-0.432152286954;PBX1:-0.442889657377;TAL1_TCF{3,4,12}:-0.464335503157;FOXO1,3,4:-0.484306198633;TEAD1:-0.502689284503;NFE2:-0.507864750526;NR1H4:-0.528556454998;CDX1,2,4:-0.59740246052;POU1F1:-0.614795509506;FOSL2:-0.714207199738;GLI1..3:-0.740721081404;BACH2:-0.766674398094;SPIB:-0.769766024408;ETS1,2:-0.786007208641;NR5A1,2:-0.789564867605;HES1:-0.801332339979;ZBTB16:-0.822375703685;ALX4:-0.844145549595;NKX2-2,8:-0.880308320487;FOS_FOS{B,L1}_JUN{B,D}:-0.886648058426;HNF4A_NR2F1,2:-0.914432642865;STAT5{A,B}:-0.916898728062;PAX8:-0.9175102336;HLF:-0.917791091153;HIF1A:-0.956841700455;NKX3-1:-0.965437857468;RUNX1..3:-0.966914856398;NFKB1_REL_RELA:-0.994435892128;TP53:-1.05261894226;RXR{A,B,G}:-1.12991778323;POU2F1..3:-1.17573529053;E2F1..5:-1.20739322232;AIRE:-1.24273520276;EVI1:-1.25188654989;ELK1,4_GABP{A,B1}:-1.38370907144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39214083528;MYB:-1.40048906114;EN1,2:-1.45002957879;RXRA_VDR{dimer}:-1.56180451241;PPARG:-1.70625450133;NR6A1:-1.71627755973;ELF1,2,4:-1.73209892613;NKX2-1,4:-2.03727012434;PITX1..3:-2.38358880794;HOX{A5,B5}:-2.63856121902;TOPORS:-2.77012117974
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10188-103D8;search_select_hide=table117:FF:10188-103D8
}}
}}

Latest revision as of 12:26, 3 June 2020

Name:cerebral meninges, adult
Species:Human (Homo sapiens)
Library ID:CNhs12840
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexM
age66
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234043-10
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005072
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12840 CAGE DRX008634 DRR009506
Accession ID Hg19

Library idBAMCTSS
CNhs12840 DRZ000931 DRZ002316
Accession ID Hg38

Library idBAMCTSS
CNhs12840 DRZ012281 DRZ013666
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.274
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.355
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0861
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.275
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.404
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0891
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.22
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.158
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.274
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.0861
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0861
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0242
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.343
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.244
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0861
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0861
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.594
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0861
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0861
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.365
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0942
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.44
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.274
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0861
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0683
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.365
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.365
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0861
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.553
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.547
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.854
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0861
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0861
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0861
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.633
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.22
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.158
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.22
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0.0861
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12840

Jaspar motifP-value
MA0002.20.0025
MA0003.10.357
MA0004.10.383
MA0006.10.499
MA0007.10.316
MA0009.10.101
MA0014.10.569
MA0017.10.00693
MA0018.20.0194
MA0019.10.381
MA0024.10.855
MA0025.10.0731
MA0027.10.545
MA0028.10.0345
MA0029.10.0132
MA0030.10.345
MA0031.10.742
MA0035.20.0582
MA0038.10.168
MA0039.20.192
MA0040.10.482
MA0041.10.197
MA0042.10.603
MA0043.10.312
MA0046.10.146
MA0047.20.123
MA0048.10.0924
MA0050.10.00417
MA0051.10.154
MA0052.10.0384
MA0055.10.00291
MA0057.10.975
MA0058.10.286
MA0059.10.0511
MA0060.10.501
MA0061.10.0104
MA0062.20.00212
MA0065.27.57239e-4
MA0066.10.0487
MA0067.10.68
MA0068.10.017
MA0069.10.553
MA0070.10.699
MA0071.10.0467
MA0072.10.33
MA0073.10.635
MA0074.10.279
MA0076.10.0705
MA0077.10.718
MA0078.10.592
MA0079.20.392
MA0080.23.85384e-9
MA0081.10.0194
MA0083.10.586
MA0084.10.901
MA0087.10.384
MA0088.10.0531
MA0090.10.64
MA0091.10.78
MA0092.10.47
MA0093.10.398
MA0099.29.94199e-11
MA0100.10.612
MA0101.10.00762
MA0102.20.275
MA0103.10.295
MA0104.20.297
MA0105.16.73866e-4
MA0106.10.0327
MA0107.10.0142
MA0108.25.11312e-4
MA0111.10.319
MA0112.20.00102
MA0113.10.283
MA0114.10.00415
MA0115.10.223
MA0116.10.00418
MA0117.10.963
MA0119.10.0404
MA0122.10.874
MA0124.10.95
MA0125.10.243
MA0131.10.807
MA0135.17.6368e-4
MA0136.18.38526e-13
MA0137.20.883
MA0138.20.143
MA0139.10.382
MA0140.10.00989
MA0141.10.0173
MA0142.10.671
MA0143.10.896
MA0144.10.458
MA0145.10.246
MA0146.10.00608
MA0147.10.204
MA0148.10.101
MA0149.10.0192
MA0150.10.00156
MA0152.10.493
MA0153.10.706
MA0154.10.0409
MA0155.10.712
MA0156.12.23484e-7
MA0157.10.505
MA0159.10.00637
MA0160.10.0375
MA0162.10.138
MA0163.12.13771e-6
MA0164.10.639
MA0258.10.00687
MA0259.10.634



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12840

Novel motifP-value
10.0317
100.0241
1000.288
1010.955
1020.901
1030.244
1040.175
1050.171
1060.119
1070.217
1080.871
1090.0144
110.0143
1100.038
1110.0331
1120.628
1130.85
1140.066
1150.71
1160.285
1170.00642
1180.0862
1190.114
120.705
1200.129
1210.41
1220.575
1230.0772
1240.19
1250.303
1260.0728
1270.311
1280.308
1290.488
130.00191
1300.611
1310.0476
1320.84
1334.30079e-4
1340.405
1350.435
1360.0549
1370.642
1380.712
1390.141
140.696
1400.433
1410.364
1420.97
1430.0298
1440.877
1450.0655
1460.454
1470.961
1480.117
1490.344
150.0726
1500.208
1510.552
1520.182
1530.808
1540.857
1550.242
1560.39
1570.555
1580.305
1590.809
160.105
1600.21
1610.178
1620.986
1630.896
1640.0166
1650.0735
1660.763
1670.227
1680.533
1690.0071
170.182
180.315
190.211
20.98
200.101
210.0404
220.24
230.505
240.103
250.514
266.89302e-5
270.977
280.633
290.0107
30.0193
300.39
310.891
320.08
330.0856
340.744
350.495
360.048
370.0413
380.286
390.371
40.613
400.0231
410.472
420.136
430.0969
440.239
450.877
460.0626
470.0332
480.0309
490.0869
50.316
500.349
510.494
520.775
530.676
540.376
550.354
560.416
570.176
580.338
590.195
60.599
600.127
610.0516
620.202
630.131
640.22
650.298
660.21
670.279
680.134
690.479
70.0596
700.0264
710.00867
720.535
730.0512
740.944
750.0228
760.323
770.328
780.00179
790.1
80.0838
800.923
810.621
820.546
830.383
840.766
850.31
860.231
870.031
880.849
890.686
90.657
900.047
910.337
920.459
930.788
940.0511
950.0329
960.689
970.866
980.272
990.677



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12840


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002360 (meninx)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000094 (membrane organ)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0010743 (meningeal cluster)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010188 (human cerebral meninges - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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