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{{f5samples
{{f5samples
|id=FF:10509-107D5
|DRA_sample_Accession=CAGE@SAMD00005401
|name=large cell lung carcinoma cell line:IA-LM
|accession_numbers=CAGE;DRX007911;DRR008783;DRZ000208;DRZ001593;DRZ011558;DRZ012943
|sample_id=10509
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=107D5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:3905,DOID:3908,DOID:4556
|rna_position=D5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0101120,FF:0100762,FF:0102205
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0554
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=68
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.9
|rna_od260/280=2.08
|sample_cell_type=unclassifiable
|sample_cell_line=IA-LM
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=large cell lung carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=47.79725
|rna_concentration=1.91189
|sample_note=
|profile_hcage=CNhs11277,LSID759,release008,COMPLETED
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|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102205
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg38.nobarcode.ctss.bed.gz
|id=FF:10509-107D5
|is_a=EFO:0002091;;FF:0000210;;FF:0102205
|is_obsolete=
|library_id=CNhs11277
|library_id_phase_based=2:CNhs11277
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10509
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10509
|name=large cell lung carcinoma cell line:IA-LM
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
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|rna_box=107
|rna_catalog_number=
|rna_concentration=1.91189
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.9
|rna_od260/280=2.08
|rna_position=D5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107D5
|rna_weight_ug=47.79725
|sample_age=68
|sample_category=cell lines
|sample_cell_catalog=RCB0554
|sample_cell_line=IA-LM
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=large cell lung carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.98155559529362e-261!GO:0043226;organelle;2.04605240708489e-222!GO:0043229;intracellular organelle;7.0052048491696e-222!GO:0043231;intracellular membrane-bound organelle;1.0020823247643e-221!GO:0043227;membrane-bound organelle;1.47434050802968e-221!GO:0005737;cytoplasm;2.48311849872211e-162!GO:0044422;organelle part;3.6098039324482e-131!GO:0044446;intracellular organelle part;1.06357186992081e-129!GO:0005634;nucleus;5.72184929783584e-112!GO:0044444;cytoplasmic part;3.69942554711326e-111!GO:0044238;primary metabolic process;2.54066485636605e-110!GO:0043170;macromolecule metabolic process;2.54799252963166e-110!GO:0044237;cellular metabolic process;3.44005383479924e-107!GO:0032991;macromolecular complex;1.44189685289535e-92!GO:0030529;ribonucleoprotein complex;1.94315283479488e-87!GO:0044428;nuclear part;8.49338710583909e-85!GO:0003723;RNA binding;9.0656189767527e-85!GO:0043233;organelle lumen;1.66291203886166e-83!GO:0031974;membrane-enclosed lumen;1.66291203886166e-83!GO:0005515;protein binding;6.62065466728174e-78!GO:0010467;gene expression;8.13174263054927e-78!GO:0043283;biopolymer metabolic process;1.27346137950454e-76!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.03420435036109e-66!GO:0006396;RNA processing;8.00648264191128e-58!GO:0031981;nuclear lumen;4.59555199306863e-57!GO:0006412;translation;1.2675985039395e-53!GO:0005739;mitochondrion;8.04307932248004e-53!GO:0019538;protein metabolic process;1.65565109594938e-52!GO:0005840;ribosome;1.38366043023978e-51!GO:0003676;nucleic acid binding;1.72996304714457e-50!GO:0015031;protein transport;2.18608463906886e-47!GO:0044267;cellular protein metabolic process;4.01011428397285e-47!GO:0044260;cellular macromolecule metabolic process;5.21887493563995e-47!GO:0033036;macromolecule localization;1.00987510032479e-46!GO:0016043;cellular component organization and biogenesis;4.21839572017216e-46!GO:0016070;RNA metabolic process;4.21839572017216e-46!GO:0031090;organelle membrane;4.79393244916109e-45!GO:0003735;structural constituent of ribosome;1.28176693237539e-44!GO:0043234;protein complex;5.45115096326473e-44!GO:0045184;establishment of protein localization;5.56007823062802e-43!GO:0016071;mRNA metabolic process;4.93781710600788e-42!GO:0008104;protein localization;6.31612908697979e-42!GO:0033279;ribosomal subunit;3.51336123710551e-39!GO:0009059;macromolecule biosynthetic process;4.8655866829239e-39!GO:0008380;RNA splicing;2.71441464950336e-38!GO:0006397;mRNA processing;1.82053555486798e-36!GO:0044429;mitochondrial part;8.44389880229645e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.30039983855123e-35!GO:0005654;nucleoplasm;6.54465857181362e-35!GO:0044249;cellular biosynthetic process;1.17442632438354e-34!GO:0009058;biosynthetic process;3.52841073459408e-34!GO:0005829;cytosol;7.74278798373647e-34!GO:0031967;organelle envelope;1.98855436710074e-33!GO:0046907;intracellular transport;2.22365320630044e-33!GO:0031975;envelope;3.2317611774852e-33!GO:0006886;intracellular protein transport;1.21819628491006e-30!GO:0044451;nucleoplasm part;8.16835680301107e-30!GO:0065003;macromolecular complex assembly;1.94617322607955e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.33534185735661e-29!GO:0006996;organelle organization and biogenesis;7.23214512152255e-28!GO:0022607;cellular component assembly;8.06932033629917e-27!GO:0000166;nucleotide binding;2.24216892235993e-26!GO:0005681;spliceosome;5.83132368426005e-26!GO:0043228;non-membrane-bound organelle;1.19569177776911e-25!GO:0043232;intracellular non-membrane-bound organelle;1.19569177776911e-25!GO:0005730;nucleolus;1.55764821824804e-24!GO:0006512;ubiquitin cycle;3.94909291883027e-24!GO:0044445;cytosolic part;5.88310937867062e-23!GO:0016874;ligase activity;3.54994812132794e-22!GO:0006259;DNA metabolic process;5.60998619713543e-22!GO:0005740;mitochondrial envelope;1.58065820037084e-21!GO:0051649;establishment of cellular localization;2.0555216072134e-21!GO:0008134;transcription factor binding;3.36837584905935e-21!GO:0051641;cellular localization;5.88303289179504e-21!GO:0006457;protein folding;6.749135890198e-21!GO:0016462;pyrophosphatase activity;1.56459198338728e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.66634246779814e-20!GO:0015934;large ribosomal subunit;1.7347124093766e-20!GO:0050794;regulation of cellular process;1.74403257671026e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6080048678279e-20!GO:0019941;modification-dependent protein catabolic process;3.0199634700391e-20!GO:0043632;modification-dependent macromolecule catabolic process;3.0199634700391e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.47140891108539e-20!GO:0031966;mitochondrial membrane;3.47140891108539e-20!GO:0012505;endomembrane system;4.18355723067677e-20!GO:0044257;cellular protein catabolic process;5.80926903965043e-20!GO:0017111;nucleoside-triphosphatase activity;5.90399963355173e-20!GO:0006511;ubiquitin-dependent protein catabolic process;7.72577791967685e-20!GO:0044265;cellular macromolecule catabolic process;1.17007352609173e-19!GO:0015935;small ribosomal subunit;1.3524732797322e-19!GO:0022618;protein-RNA complex assembly;1.4156966368231e-19!GO:0019866;organelle inner membrane;1.76660426835195e-19!GO:0043285;biopolymer catabolic process;6.25566260705355e-19!GO:0019222;regulation of metabolic process;2.15577755045456e-18!GO:0005743;mitochondrial inner membrane;5.35573986091638e-18!GO:0043412;biopolymer modification;9.49444612716371e-18!GO:0008135;translation factor activity, nucleic acid binding;1.31762354012368e-17!GO:0032553;ribonucleotide binding;2.10022783464161e-17!GO:0032555;purine ribonucleotide binding;2.10022783464161e-17!GO:0006119;oxidative phosphorylation;2.27587286484353e-17!GO:0017076;purine nucleotide binding;4.16205600376375e-17!GO:0031980;mitochondrial lumen;1.05487320441524e-16!GO:0005759;mitochondrial matrix;1.05487320441524e-16!GO:0048770;pigment granule;1.24088999502663e-16!GO:0042470;melanosome;1.24088999502663e-16!GO:0042254;ribosome biogenesis and assembly;1.77207085344955e-16!GO:0009057;macromolecule catabolic process;2.13096272025572e-16!GO:0006605;protein targeting;2.53761435926583e-16!GO:0030163;protein catabolic process;6.71553375603197e-16!GO:0006464;protein modification process;1.44992039609586e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.01766918143428e-15!GO:0044455;mitochondrial membrane part;2.57879945634786e-15!GO:0004386;helicase activity;3.77347942242721e-15!GO:0005794;Golgi apparatus;4.02520364407431e-15!GO:0006350;transcription;5.05725706882146e-15!GO:0031323;regulation of cellular metabolic process;5.07664758315678e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08483978264222e-15!GO:0051082;unfolded protein binding;1.28251748072165e-14!GO:0048193;Golgi vesicle transport;1.56340430843595e-14!GO:0050789;regulation of biological process;1.73398121019246e-14!GO:0003712;transcription cofactor activity;2.03536189486494e-14!GO:0044432;endoplasmic reticulum part;3.06170803484318e-14!GO:0007049;cell cycle;3.45807812577076e-14!GO:0005524;ATP binding;3.53051358710765e-14!GO:0006366;transcription from RNA polymerase II promoter;4.35266143870087e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.24229210991609e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.99403555402581e-14!GO:0000375;RNA splicing, via transesterification reactions;6.99403555402581e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.99403555402581e-14!GO:0005783;endoplasmic reticulum;7.05828682694737e-14!GO:0043687;post-translational protein modification;7.78121132263216e-14!GO:0032559;adenyl ribonucleotide binding;7.8805911151077e-14!GO:0016604;nuclear body;7.90322482773336e-14!GO:0006913;nucleocytoplasmic transport;1.07533195482323e-13!GO:0008639;small protein conjugating enzyme activity;1.44443391850769e-13!GO:0030554;adenyl nucleotide binding;1.98386904632401e-13!GO:0044248;cellular catabolic process;2.44001462020348e-13!GO:0006399;tRNA metabolic process;2.61276719626006e-13!GO:0031965;nuclear membrane;2.757485118964e-13!GO:0004842;ubiquitin-protein ligase activity;2.86322238238448e-13!GO:0051169;nuclear transport;2.89614502937935e-13!GO:0010468;regulation of gene expression;2.95944727427098e-13!GO:0005761;mitochondrial ribosome;2.95944727427098e-13!GO:0000313;organellar ribosome;2.95944727427098e-13!GO:0016192;vesicle-mediated transport;3.94322308745826e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.85145167483384e-13!GO:0008026;ATP-dependent helicase activity;7.96882317463282e-13!GO:0019787;small conjugating protein ligase activity;8.41182601877943e-13!GO:0003743;translation initiation factor activity;8.73929817109527e-13!GO:0044453;nuclear membrane part;9.50705857264741e-13!GO:0005635;nuclear envelope;1.01242812137178e-12!GO:0005746;mitochondrial respiratory chain;1.21653019813183e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.00360899681121e-12!GO:0032774;RNA biosynthetic process;2.73033294567424e-12!GO:0006351;transcription, DNA-dependent;2.98675459292543e-12!GO:0006413;translational initiation;3.10948363235444e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.0807327846294e-12!GO:0050136;NADH dehydrogenase (quinone) activity;6.52565701358556e-12!GO:0003954;NADH dehydrogenase activity;6.52565701358556e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.52565701358556e-12!GO:0016607;nuclear speck;9.04049717772978e-12!GO:0005643;nuclear pore;1.06838759551786e-11!GO:0006403;RNA localization;1.28528611201905e-11!GO:0006974;response to DNA damage stimulus;2.18815231857165e-11!GO:0050657;nucleic acid transport;2.50530047606857e-11!GO:0051236;establishment of RNA localization;2.50530047606857e-11!GO:0050658;RNA transport;2.50530047606857e-11!GO:0016881;acid-amino acid ligase activity;3.13764695822718e-11!GO:0045449;regulation of transcription;3.96171128478843e-11!GO:0006364;rRNA processing;4.42152094615198e-11!GO:0016072;rRNA metabolic process;5.69461062068747e-11!GO:0017038;protein import;5.91190877674458e-11!GO:0006446;regulation of translational initiation;6.89025748116634e-11!GO:0042623;ATPase activity, coupled;6.97496899705722e-11!GO:0016887;ATPase activity;7.66982235163267e-11!GO:0051186;cofactor metabolic process;1.46755901765752e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.55610221236263e-10!GO:0042773;ATP synthesis coupled electron transport;1.55610221236263e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.05364839522772e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.54220168056041e-10!GO:0045271;respiratory chain complex I;3.54220168056041e-10!GO:0005747;mitochondrial respiratory chain complex I;3.54220168056041e-10!GO:0065002;intracellular protein transport across a membrane;5.9395597818939e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.9395597818939e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.9395597818939e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.9395597818939e-10!GO:0012501;programmed cell death;7.25810994804478e-10!GO:0005789;endoplasmic reticulum membrane;7.80572411570701e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.81303371164757e-10!GO:0051276;chromosome organization and biogenesis;7.83934375108279e-10!GO:0006355;regulation of transcription, DNA-dependent;8.47292169119524e-10!GO:0006281;DNA repair;8.63089144336756e-10!GO:0006915;apoptosis;1.09434714352262e-09!GO:0022402;cell cycle process;1.11040452258104e-09!GO:0016568;chromatin modification;1.11040452258104e-09!GO:0016563;transcription activator activity;1.15383599272854e-09!GO:0006461;protein complex assembly;1.15601889309394e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22504513578495e-09!GO:0065007;biological regulation;1.28204366766492e-09!GO:0005793;ER-Golgi intermediate compartment;1.28598393584651e-09!GO:0043038;amino acid activation;1.40587678922611e-09!GO:0006418;tRNA aminoacylation for protein translation;1.40587678922611e-09!GO:0043039;tRNA aminoacylation;1.40587678922611e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.77264678468125e-09!GO:0051028;mRNA transport;1.80834369183884e-09!GO:0008565;protein transporter activity;2.48608563356629e-09!GO:0046930;pore complex;3.31523604174646e-09!GO:0005667;transcription factor complex;3.61368795881348e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.15480927281799e-09!GO:0006323;DNA packaging;4.55759857391688e-09!GO:0032446;protein modification by small protein conjugation;6.57040977730392e-09!GO:0016567;protein ubiquitination;8.19199160945591e-09!GO:0008219;cell death;8.30721568401931e-09!GO:0016265;death;8.30721568401931e-09!GO:0048523;negative regulation of cellular process;1.59926283759344e-08!GO:0006732;coenzyme metabolic process;1.66914869743108e-08!GO:0009259;ribonucleotide metabolic process;2.39970190907063e-08!GO:0003713;transcription coactivator activity;2.39970190907063e-08!GO:0006163;purine nucleotide metabolic process;2.72440366097927e-08!GO:0005768;endosome;2.9270248860598e-08!GO:0051170;nuclear import;3.75967079580692e-08!GO:0008270;zinc ion binding;3.75967079580692e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.91295714198975e-08!GO:0000278;mitotic cell cycle;4.23630533289762e-08!GO:0003724;RNA helicase activity;5.48157927567875e-08!GO:0051246;regulation of protein metabolic process;5.81986339591777e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.8695384510118e-08!GO:0031324;negative regulation of cellular metabolic process;8.19747766006282e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.58651995263178e-08!GO:0006606;protein import into nucleus;9.20109762130467e-08!GO:0006164;purine nucleotide biosynthetic process;9.58828069517121e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.41963243696777e-07!GO:0009150;purine ribonucleotide metabolic process;1.44790655532194e-07!GO:0009719;response to endogenous stimulus;1.72100324838682e-07!GO:0009260;ribonucleotide biosynthetic process;1.96633851498777e-07!GO:0000151;ubiquitin ligase complex;2.02795645229667e-07!GO:0016564;transcription repressor activity;2.54806326769298e-07!GO:0003924;GTPase activity;2.64896451055683e-07!GO:0044431;Golgi apparatus part;3.18109562049069e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.68006365576416e-07!GO:0051726;regulation of cell cycle;3.68006365576416e-07!GO:0016779;nucleotidyltransferase activity;3.83262015138552e-07!GO:0009141;nucleoside triphosphate metabolic process;4.651453271733e-07!GO:0006260;DNA replication;4.73269548127229e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.81964658815019e-07!GO:0009056;catabolic process;5.0292997762562e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.17249882183251e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.21857982676494e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.21857982676494e-07!GO:0000074;regulation of progression through cell cycle;5.24412364035586e-07!GO:0043566;structure-specific DNA binding;5.51757801600647e-07!GO:0030120;vesicle coat;5.60165744533078e-07!GO:0030662;coated vesicle membrane;5.60165744533078e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.50939602543283e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.50939602543283e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.81473331760329e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.81473331760329e-07!GO:0048519;negative regulation of biological process;8.30507733638089e-07!GO:0000245;spliceosome assembly;9.53236248722566e-07!GO:0009055;electron carrier activity;1.07003289006883e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.11670794100388e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.11670794100388e-06!GO:0003714;transcription corepressor activity;1.1579914404716e-06!GO:0016740;transferase activity;1.19545006307977e-06!GO:0003677;DNA binding;1.28944216020494e-06!GO:0007005;mitochondrion organization and biogenesis;1.29960026271331e-06!GO:0009892;negative regulation of metabolic process;1.32922325258321e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.80594754691043e-06!GO:0015986;ATP synthesis coupled proton transport;1.9419637896342e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.9419637896342e-06!GO:0051427;hormone receptor binding;2.05805910981893e-06!GO:0048475;coated membrane;2.21974481260696e-06!GO:0030117;membrane coat;2.21974481260696e-06!GO:0042981;regulation of apoptosis;2.23020352247419e-06!GO:0005788;endoplasmic reticulum lumen;2.35450813367076e-06!GO:0016481;negative regulation of transcription;2.46739029308905e-06!GO:0043067;regulation of programmed cell death;2.5282734460924e-06!GO:0051188;cofactor biosynthetic process;2.9387983732506e-06!GO:0003697;single-stranded DNA binding;2.97444887702181e-06!GO:0044440;endosomal part;3.3300512442409e-06!GO:0010008;endosome membrane;3.3300512442409e-06!GO:0046914;transition metal ion binding;3.64157160471634e-06!GO:0008186;RNA-dependent ATPase activity;3.68442202382386e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.02459016266073e-06!GO:0035257;nuclear hormone receptor binding;4.49637675590617e-06!GO:0006793;phosphorus metabolic process;5.32364687631436e-06!GO:0006796;phosphate metabolic process;5.32364687631436e-06!GO:0009060;aerobic respiration;5.60655211944549e-06!GO:0019829;cation-transporting ATPase activity;5.69496500576519e-06!GO:0031988;membrane-bound vesicle;6.2313805673303e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.27782016857771e-06!GO:0005694;chromosome;6.30432518156733e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.79896652231224e-06!GO:0006613;cotranslational protein targeting to membrane;6.86667656421453e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.7704221536747e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.49230101436429e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.40715114242563e-06!GO:0043623;cellular protein complex assembly;9.4423046973506e-06!GO:0005525;GTP binding;9.81338694337539e-06!GO:0045333;cellular respiration;1.02018662848669e-05!GO:0046034;ATP metabolic process;1.08139158995211e-05!GO:0044452;nucleolar part;1.09699037247369e-05!GO:0004004;ATP-dependent RNA helicase activity;1.18682055875838e-05!GO:0006752;group transfer coenzyme metabolic process;1.33186451126257e-05!GO:0003899;DNA-directed RNA polymerase activity;1.42549258123233e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.46188988748354e-05!GO:0006754;ATP biosynthetic process;1.50146559851547e-05!GO:0006753;nucleoside phosphate metabolic process;1.50146559851547e-05!GO:0045259;proton-transporting ATP synthase complex;1.63519514250508e-05!GO:0000139;Golgi membrane;1.75044546252538e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.22419839920423e-05!GO:0051168;nuclear export;2.46208268816339e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.48783356653304e-05!GO:0031982;vesicle;2.86466125438414e-05!GO:0022403;cell cycle phase;3.17866605666699e-05!GO:0008033;tRNA processing;3.29829385165239e-05!GO:0006402;mRNA catabolic process;3.6116834010802e-05!GO:0031410;cytoplasmic vesicle;4.27049068149773e-05!GO:0031252;leading edge;4.30033499168612e-05!GO:0065004;protein-DNA complex assembly;4.32491923157766e-05!GO:0016310;phosphorylation;4.66325142523381e-05!GO:0006352;transcription initiation;4.68389526042071e-05!GO:0009108;coenzyme biosynthetic process;5.13098181975975e-05!GO:0005770;late endosome;5.48903298505629e-05!GO:0043069;negative regulation of programmed cell death;5.58305139390212e-05!GO:0005762;mitochondrial large ribosomal subunit;5.79208181267261e-05!GO:0000315;organellar large ribosomal subunit;5.79208181267261e-05!GO:0000087;M phase of mitotic cell cycle;6.29261202101863e-05!GO:0000059;protein import into nucleus, docking;6.29261202101863e-05!GO:0009117;nucleotide metabolic process;6.88101937104679e-05!GO:0019899;enzyme binding;6.95306983956e-05!GO:0051301;cell division;6.98013234472232e-05!GO:0043066;negative regulation of apoptosis;7.4537009252632e-05!GO:0043021;ribonucleoprotein binding;7.47936292481378e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.67225578111374e-05!GO:0007067;mitosis;8.78599485702235e-05!GO:0045786;negative regulation of progression through cell cycle;9.28780093501322e-05!GO:0003690;double-stranded DNA binding;0.000101746846017794!GO:0032561;guanyl ribonucleotide binding;0.000104202985689243!GO:0019001;guanyl nucleotide binding;0.000104202985689243!GO:0004298;threonine endopeptidase activity;0.000106034354735187!GO:0008654;phospholipid biosynthetic process;0.000106070532368215!GO:0003729;mRNA binding;0.000114282704167436!GO:0016859;cis-trans isomerase activity;0.000142340945063791!GO:0000314;organellar small ribosomal subunit;0.000152568980630615!GO:0005763;mitochondrial small ribosomal subunit;0.000152568980630615!GO:0045454;cell redox homeostasis;0.000156844122981695!GO:0007243;protein kinase cascade;0.000160686816881769!GO:0005798;Golgi-associated vesicle;0.00017499721155336!GO:0030867;rough endoplasmic reticulum membrane;0.000176598825680956!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000179503395195485!GO:0015630;microtubule cytoskeleton;0.000180937886648849!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000187275497353405!GO:0006916;anti-apoptosis;0.000187275497353405!GO:0031072;heat shock protein binding;0.000199498174495767!GO:0016251;general RNA polymerase II transcription factor activity;0.000203093649022315!GO:0005813;centrosome;0.000203243182918422!GO:0044427;chromosomal part;0.000207390542332802!GO:0051789;response to protein stimulus;0.000213810142797936!GO:0006986;response to unfolded protein;0.000213810142797936!GO:0016787;hydrolase activity;0.000226418492461336!GO:0006891;intra-Golgi vesicle-mediated transport;0.000234258994556817!GO:0045941;positive regulation of transcription;0.000272532266558036!GO:0007264;small GTPase mediated signal transduction;0.000320105376895513!GO:0006401;RNA catabolic process;0.000353578046093455!GO:0006612;protein targeting to membrane;0.000365160540551797!GO:0006383;transcription from RNA polymerase III promoter;0.000401606718632482!GO:0006099;tricarboxylic acid cycle;0.000407851924469136!GO:0046356;acetyl-CoA catabolic process;0.000407851924469136!GO:0045045;secretory pathway;0.000409853846094769!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000422629849250677!GO:0030036;actin cytoskeleton organization and biogenesis;0.000442570182695722!GO:0003702;RNA polymerase II transcription factor activity;0.000454667084762928!GO:0006414;translational elongation;0.000472827456455967!GO:0000049;tRNA binding;0.000485216283780119!GO:0005815;microtubule organizing center;0.000501632193434696!GO:0005048;signal sequence binding;0.000535934322544147!GO:0008250;oligosaccharyl transferase complex;0.000543472446859838!GO:0030880;RNA polymerase complex;0.000615941591526972!GO:0033116;ER-Golgi intermediate compartment membrane;0.000620957956901053!GO:0006084;acetyl-CoA metabolic process;0.000636204440835835!GO:0043681;protein import into mitochondrion;0.000721138511299446!GO:0006333;chromatin assembly or disassembly;0.000722099285738353!GO:0004674;protein serine/threonine kinase activity;0.000726469129601233!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000750337436777127!GO:0051329;interphase of mitotic cell cycle;0.00075112190801851!GO:0005773;vacuole;0.000812323946587709!GO:0009109;coenzyme catabolic process;0.000845311019042499!GO:0048522;positive regulation of cellular process;0.000884655955629758!GO:0051325;interphase;0.000999623116586494!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103439885609119!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00103663314690341!GO:0000428;DNA-directed RNA polymerase complex;0.00103663314690341!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107350404134497!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108886212337253!GO:0008361;regulation of cell size;0.00119876739066468!GO:0018196;peptidyl-asparagine modification;0.00120302201986268!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00120302201986268!GO:0005769;early endosome;0.00120302201986268!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00125496952637073!GO:0031625;ubiquitin protein ligase binding;0.00127441658944078!GO:0016363;nuclear matrix;0.00127918339174884!GO:0046966;thyroid hormone receptor binding;0.00129371140440179!GO:0045893;positive regulation of transcription, DNA-dependent;0.00130808026931209!GO:0006626;protein targeting to mitochondrion;0.00135450128974558!GO:0003711;transcription elongation regulator activity;0.00135981959520853!GO:0004576;oligosaccharyl transferase activity;0.00138793441779495!GO:0048500;signal recognition particle;0.00148530394672401!GO:0006338;chromatin remodeling;0.00159246199565926!GO:0016853;isomerase activity;0.00159460660904789!GO:0019867;outer membrane;0.00162413879923166!GO:0005905;coated pit;0.00164390060105874!GO:0005885;Arp2/3 protein complex;0.00165140930589012!GO:0045892;negative regulation of transcription, DNA-dependent;0.00165796401785859!GO:0003678;DNA helicase activity;0.00169744531792985!GO:0031968;organelle outer membrane;0.00171951031057187!GO:0048471;perinuclear region of cytoplasm;0.00171951031057187!GO:0003746;translation elongation factor activity;0.00176331714123665!GO:0019783;small conjugating protein-specific protease activity;0.00211480213530764!GO:0046474;glycerophospholipid biosynthetic process;0.00217100197256549!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0023204696282777!GO:0051187;cofactor catabolic process;0.00242869559435894!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00242869559435894!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00242869559435894!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00242869559435894!GO:0009116;nucleoside metabolic process;0.00250840603161982!GO:0051920;peroxiredoxin activity;0.00252260669255404!GO:0015980;energy derivation by oxidation of organic compounds;0.00253728582014199!GO:0006261;DNA-dependent DNA replication;0.00256062011804037!GO:0000323;lytic vacuole;0.00264859417512627!GO:0005764;lysosome;0.00264859417512627!GO:0033673;negative regulation of kinase activity;0.0027684491396084!GO:0006469;negative regulation of protein kinase activity;0.0027684491396084!GO:0016049;cell growth;0.00278713149974041!GO:0000785;chromatin;0.00278976348336322!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00286664900295028!GO:0030134;ER to Golgi transport vesicle;0.00290499086224304!GO:0004843;ubiquitin-specific protease activity;0.00294173562713325!GO:0005741;mitochondrial outer membrane;0.00307694426589325!GO:0051087;chaperone binding;0.00307694426589325!GO:0030029;actin filament-based process;0.0031312546592607!GO:0030521;androgen receptor signaling pathway;0.00319871151319278!GO:0008312;7S RNA binding;0.00319871151319278!GO:0030133;transport vesicle;0.00330462996878263!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00332697564002442!GO:0008168;methyltransferase activity;0.00353265657151895!GO:0016197;endosome transport;0.00359796274377696!GO:0051252;regulation of RNA metabolic process;0.0036061833046337!GO:0016741;transferase activity, transferring one-carbon groups;0.00365345872461142!GO:0006405;RNA export from nucleus;0.0038236131507733!GO:0000279;M phase;0.00387751932957885!GO:0004221;ubiquitin thiolesterase activity;0.00410705218577033!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0041806866988572!GO:0045047;protein targeting to ER;0.0041806866988572!GO:0007010;cytoskeleton organization and biogenesis;0.0041806866988572!GO:0016272;prefoldin complex;0.00427207790165191!GO:0003684;damaged DNA binding;0.00438040021038358!GO:0030127;COPII vesicle coat;0.00448104848144383!GO:0012507;ER to Golgi transport vesicle membrane;0.00448104848144383!GO:0009112;nucleobase metabolic process;0.00456986750563238!GO:0051348;negative regulation of transferase activity;0.00472920511650958!GO:0046483;heterocycle metabolic process;0.00477778034135613!GO:0030118;clathrin coat;0.00477883062820084!GO:0030132;clathrin coat of coated pit;0.00483748907412052!GO:0046489;phosphoinositide biosynthetic process;0.00490866849304319!GO:0005669;transcription factor TFIID complex;0.005085431323334!GO:0008139;nuclear localization sequence binding;0.005085431323334!GO:0006892;post-Golgi vesicle-mediated transport;0.00517916180244028!GO:0030658;transport vesicle membrane;0.00520258671647247!GO:0035258;steroid hormone receptor binding;0.00534733541474359!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00546602574076614!GO:0006354;RNA elongation;0.00586569064927784!GO:0006302;double-strand break repair;0.00592105731424747!GO:0008180;signalosome;0.00592963076713243!GO:0046467;membrane lipid biosynthetic process;0.00593967060620738!GO:0016790;thiolester hydrolase activity;0.00605289420671937!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00635672365266174!GO:0043284;biopolymer biosynthetic process;0.00646710679739335!GO:0006417;regulation of translation;0.00663277357980601!GO:0001558;regulation of cell growth;0.00666339291876447!GO:0019843;rRNA binding;0.00695672710177797!GO:0000082;G1/S transition of mitotic cell cycle;0.00719949848433146!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00742815032654607!GO:0051052;regulation of DNA metabolic process;0.00759753069385471!GO:0045792;negative regulation of cell size;0.00782484075020414!GO:0006650;glycerophospholipid metabolic process;0.00792256043865578!GO:0043624;cellular protein complex disassembly;0.00794519078873517!GO:0008022;protein C-terminus binding;0.00796417425521171!GO:0048487;beta-tubulin binding;0.00805414191494126!GO:0006310;DNA recombination;0.00809740999906701!GO:0006839;mitochondrial transport;0.00814034931245793!GO:0006611;protein export from nucleus;0.00815761196284866!GO:0009119;ribonucleoside metabolic process;0.00815761196284866!GO:0043022;ribosome binding;0.00855052988254503!GO:0007006;mitochondrial membrane organization and biogenesis;0.00861518571830245!GO:0009165;nucleotide biosynthetic process;0.00885152981112877!GO:0042802;identical protein binding;0.00898617480583051!GO:0065009;regulation of a molecular function;0.00906147266731984!GO:0005684;U2-dependent spliceosome;0.00910216451993426!GO:0003682;chromatin binding;0.00921845542724828!GO:0006376;mRNA splice site selection;0.0093215127622074!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0093215127622074!GO:0017166;vinculin binding;0.00933237726025465!GO:0006400;tRNA modification;0.0095842604320783!GO:0005791;rough endoplasmic reticulum;0.00962240276508679!GO:0016044;membrane organization and biogenesis;0.00967281637517873!GO:0007050;cell cycle arrest;0.00997194877704119!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00997979525238075!GO:0008234;cysteine-type peptidase activity;0.0101875033622426!GO:0030308;negative regulation of cell growth;0.0108639450299783!GO:0030660;Golgi-associated vesicle membrane;0.0109547721311363!GO:0051128;regulation of cellular component organization and biogenesis;0.0110321094305282!GO:0051059;NF-kappaB binding;0.0111523089986272!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0113498016756626!GO:0031124;mRNA 3'-end processing;0.0113498016756626!GO:0043407;negative regulation of MAP kinase activity;0.0113871638078327!GO:0005832;chaperonin-containing T-complex;0.0117979798100795!GO:0006144;purine base metabolic process;0.0118655919078907!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0125422154342261!GO:0008632;apoptotic program;0.0131878310414364!GO:0030663;COPI coated vesicle membrane;0.0133587929197126!GO:0030126;COPI vesicle coat;0.0133587929197126!GO:0007030;Golgi organization and biogenesis;0.0134536129613347!GO:0030384;phosphoinositide metabolic process;0.0136748906260721!GO:0043488;regulation of mRNA stability;0.014004471256106!GO:0043487;regulation of RNA stability;0.014004471256106!GO:0032984;macromolecular complex disassembly;0.0144291279112336!GO:0030176;integral to endoplasmic reticulum membrane;0.0147692822620063!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0151937937810077!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0151937937810077!GO:0030125;clathrin vesicle coat;0.0152110854496155!GO:0030665;clathrin coated vesicle membrane;0.0152110854496155!GO:0030137;COPI-coated vesicle;0.0157136336576062!GO:0032940;secretion by cell;0.0157136336576062!GO:0015631;tubulin binding;0.0158524336228798!GO:0032200;telomere organization and biogenesis;0.0164726831434193!GO:0000723;telomere maintenance;0.0164726831434193!GO:0006595;polyamine metabolic process;0.0167115911457333!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0169538936924774!GO:0030659;cytoplasmic vesicle membrane;0.017257445527067!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0174669741594234!GO:0030518;steroid hormone receptor signaling pathway;0.0180177659625695!GO:0031529;ruffle organization and biogenesis;0.0180502122861345!GO:0004527;exonuclease activity;0.0184095036595025!GO:0046128;purine ribonucleoside metabolic process;0.0184095036595025!GO:0042278;purine nucleoside metabolic process;0.0184095036595025!GO:0008097;5S rRNA binding;0.0188577476445818!GO:0001726;ruffle;0.0188577476445818!GO:0031902;late endosome membrane;0.0188577476445818!GO:0045926;negative regulation of growth;0.0191041489257612!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0192076148528161!GO:0015399;primary active transmembrane transporter activity;0.0192076148528161!GO:0031461;cullin-RING ubiquitin ligase complex;0.0196214365679557!GO:0032507;maintenance of cellular protein localization;0.0196952929769403!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0198108363346613!GO:0006378;mRNA polyadenylation;0.0200667649946847!GO:0007004;telomere maintenance via telomerase;0.0202032561097638!GO:0051540;metal cluster binding;0.0203207781975748!GO:0051536;iron-sulfur cluster binding;0.0203207781975748!GO:0031326;regulation of cellular biosynthetic process;0.0210800824372494!GO:0004003;ATP-dependent DNA helicase activity;0.0210800824372494!GO:0007034;vacuolar transport;0.0211165805687039!GO:0046983;protein dimerization activity;0.021231788923504!GO:0030119;AP-type membrane coat adaptor complex;0.0214225337836058!GO:0031123;RNA 3'-end processing;0.0214225337836058!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0216813468524271!GO:0005637;nuclear inner membrane;0.0217499967131293!GO:0043241;protein complex disassembly;0.0219143838287321!GO:0048144;fibroblast proliferation;0.0222205147912596!GO:0048145;regulation of fibroblast proliferation;0.0222205147912596!GO:0000209;protein polyubiquitination;0.0222853866916062!GO:0009451;RNA modification;0.0223510692673058!GO:0008094;DNA-dependent ATPase activity;0.022713861633918!GO:0006360;transcription from RNA polymerase I promoter;0.022763627208106!GO:0006497;protein amino acid lipidation;0.0228758480726637!GO:0030027;lamellipodium;0.022967585501062!GO:0032508;DNA duplex unwinding;0.0232421656804102!GO:0032392;DNA geometric change;0.0232421656804102!GO:0000075;cell cycle checkpoint;0.0233920626255108!GO:0008047;enzyme activator activity;0.0237092800554538!GO:0044433;cytoplasmic vesicle part;0.023888567810833!GO:0006984;ER-nuclear signaling pathway;0.0241358717653928!GO:0022411;cellular component disassembly;0.0242339231588192!GO:0031901;early endosome membrane;0.0243865237238573!GO:0005657;replication fork;0.0263047036073323!GO:0005819;spindle;0.0264788219368098!GO:0006289;nucleotide-excision repair;0.0269187338096848!GO:0030833;regulation of actin filament polymerization;0.0269654309204357!GO:0000123;histone acetyltransferase complex;0.0269973371454978!GO:0006458;'de novo' protein folding;0.0269973371454978!GO:0051084;'de novo' posttranslational protein folding;0.0269973371454978!GO:0008538;proteasome activator activity;0.0279505071014332!GO:0009303;rRNA transcription;0.0285071304937443!GO:0009967;positive regulation of signal transduction;0.0286762652982571!GO:0022408;negative regulation of cell-cell adhesion;0.0292312728790785!GO:0012506;vesicle membrane;0.0293542819152251!GO:0007265;Ras protein signal transduction;0.0295371057329201!GO:0048146;positive regulation of fibroblast proliferation;0.0297825092728139!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0299074614099037!GO:0009893;positive regulation of metabolic process;0.0299915841182371!GO:0000096;sulfur amino acid metabolic process;0.0299915841182371!GO:0048518;positive regulation of biological process;0.0300196647414849!GO:0022415;viral reproductive process;0.0302457169497976!GO:0051101;regulation of DNA binding;0.0304182742933312!GO:0046822;regulation of nucleocytoplasmic transport;0.0304799101915!GO:0017134;fibroblast growth factor binding;0.030561422424488!GO:0030433;ER-associated protein catabolic process;0.0314756602486308!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0314756602486308!GO:0030131;clathrin adaptor complex;0.0315514836500242!GO:0009889;regulation of biosynthetic process;0.0319273233356832!GO:0042809;vitamin D receptor binding;0.0323519726944803!GO:0005083;small GTPase regulator activity;0.0328892174097182!GO:0047485;protein N-terminus binding;0.0329055128319957!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0331928916096017!GO:0015002;heme-copper terminal oxidase activity;0.0331928916096017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0331928916096017!GO:0004129;cytochrome-c oxidase activity;0.0331928916096017!GO:0003725;double-stranded RNA binding;0.0331928916096017!GO:0008637;apoptotic mitochondrial changes;0.0332667428799482!GO:0000339;RNA cap binding;0.0332677149791203!GO:0043189;H4/H2A histone acetyltransferase complex;0.0340483651270637!GO:0005784;translocon complex;0.0344030415724292!GO:0008092;cytoskeletal protein binding;0.0346049835220161!GO:0040029;regulation of gene expression, epigenetic;0.0349742351330691!GO:0004532;exoribonuclease activity;0.0351007755334904!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0351007755334904!GO:0005732;small nucleolar ribonucleoprotein complex;0.0353484126191775!GO:0000287;magnesium ion binding;0.0360861908964155!GO:0016579;protein deubiquitination;0.0361650018140795!GO:0000178;exosome (RNase complex);0.0368351296086473!GO:0042026;protein refolding;0.0370466962316253!GO:0051539;4 iron, 4 sulfur cluster binding;0.0371985797530188!GO:0051651;maintenance of cellular localization;0.0375127356956911!GO:0042393;histone binding;0.0378788712297949!GO:0043130;ubiquitin binding;0.0380123442520046!GO:0032182;small conjugating protein binding;0.0380123442520046!GO:0000118;histone deacetylase complex;0.0383369091030424!GO:0016791;phosphoric monoester hydrolase activity;0.0387497223906193!GO:0005869;dynactin complex;0.0387497223906193!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0389044212348027!GO:0040008;regulation of growth;0.0389786214815339!GO:0006506;GPI anchor biosynthetic process;0.0389979134358744!GO:0004860;protein kinase inhibitor activity;0.0390910307681155!GO:0000152;nuclear ubiquitin ligase complex;0.0391352096175964!GO:0008536;Ran GTPase binding;0.0394954676175324!GO:0015992;proton transport;0.0395318023365475!GO:0051287;NAD binding;0.0395753720643621!GO:0016311;dephosphorylation;0.0395753720643621!GO:0006818;hydrogen transport;0.0395754064030892!GO:0050662;coenzyme binding;0.0401894737395502!GO:0000776;kinetochore;0.0402972130025432!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0408831602029281!GO:0050681;androgen receptor binding;0.0416113928789855!GO:0005874;microtubule;0.0417102507671286!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0417705604313791!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0417705604313791!GO:0008017;microtubule binding;0.0421418920372117!GO:0006505;GPI anchor metabolic process;0.0421418920372117!GO:0007041;lysosomal transport;0.0426915797544974!GO:0030224;monocyte differentiation;0.0437369040890469!GO:0007162;negative regulation of cell adhesion;0.0450063490275177!GO:0007021;tubulin folding;0.0455857040273794!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0457178191074525!GO:0008286;insulin receptor signaling pathway;0.0459304494494055!GO:0004177;aminopeptidase activity;0.0466542437872564!GO:0006607;NLS-bearing substrate import into nucleus;0.0477543736522781!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0483345372698045!GO:0032040;small subunit processome;0.0484499905747619!GO:0005521;lamin binding;0.0486802462609223!GO:0000781;chromosome, telomeric region;0.0486924088358751!GO:0006268;DNA unwinding during replication;0.0496006528294589
|sample_id=10509
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=AHR_ARNT_ARNT2:1.54132959411;FOX{I1,J2}:1.44667214087;bHLH_family:1.35127874078;HIF1A:1.15947576911;HBP1_HMGB_SSRP1_UBTF:1.15783095738;ZNF148:1.12264355923;PITX1..3:1.08085003112;NANOG:1.07188089216;NKX2-1,4:1.02893848727;FOXQ1:1.01506141424;RXR{A,B,G}:1.00523282236;CRX:0.934420979964;MYOD1:0.933261821374;YY1:0.910688540448;STAT1,3:0.868571955564;PPARG:0.818251321299;ELK1,4_GABP{A,B1}:0.797510886804;FOX{D1,D2}:0.773382285596;ZNF143:0.758411076821;ONECUT1,2:0.752799448002;HOXA9_MEIS1:0.751215113903;MZF1:0.737492442539;FOXA2:0.728567930053;NKX6-1,2:0.685731912662;ADNP_IRX_SIX_ZHX:0.684401784663;EN1,2:0.657547287557;SOX17:0.648191458979;STAT5{A,B}:0.647539081537;FOXP1:0.593647064362;POU1F1:0.50685893235;CDC5L:0.462107247887;FOX{F1,F2,J1}:0.451510872067;BACH2:0.450289149505;RBPJ:0.44705147368;NRF1:0.413299782364;FOXM1:0.396797444565;IRF7:0.372183323881;FOS_FOS{B,L1}_JUN{B,D}:0.357255646581;HOX{A4,D4}:0.356461807712;TEF:0.355004940444;PATZ1:0.337895473476;NKX2-3_NKX2-5:0.313861486669;TEAD1:0.310302106298;XBP1:0.300396324209;FOSL2:0.271476373479;CDX1,2,4:0.262793379795;RORA:0.260208208975;NFE2:0.246962726165;MED-1{core}:0.234327260992;PAX8:0.229152320917;ALX1:0.217025017244;FOXD3:0.21650378029;TBX4,5:0.215152610523;HES1:0.209773845792;CUX2:0.203420581788;PDX1:0.197114056641;RREB1:0.19603888347;MYB:0.18366671297;TFDP1:0.178926602784;TLX2:0.175685421636;LHX3,4:0.169491440944;ZBTB16:0.164078667981;SNAI1..3:0.164039425082;EVI1:0.153687940206;ZFP161:0.136296771178;FOXN1:0.129520546315;PRRX1,2:0.124186808401;ZIC1..3:0.122874842329;IRF1,2:0.107571016127;SPZ1:0.104089719368;ESRRA:0.0881350768348;NFE2L2:0.0834990130125;ATF5_CREB3:0.0813659364789;PAX2:0.0637073703743;RFX2..5_RFXANK_RFXAP:0.0621221188323;PAX3,7:0.0615094503322;ATF4:0.0613130642213;ZEB1:0.0403567829533;HOX{A6,A7,B6,B7}:0.0397522375013;REST:0.0265787698123;EGR1..3:0.018870983107;CEBPA,B_DDIT3:0.0158374282134;NFIL3:0.00771641820761;GLI1..3:0.00533271850311;NFKB1_REL_RELA:0.00388800093181;HSF1,2:-0.00196961857021;GTF2A1,2:-0.00896720637345;ELF1,2,4:-0.0128422484671;LEF1_TCF7_TCF7L1,2:-0.0163199203156;HOX{A5,B5}:-0.0217206703453;ZBTB6:-0.0377927791545;GTF2I:-0.0411610877555;OCT4_SOX2{dimer}:-0.0442355459341;NKX3-1:-0.0496472951492;SOX5:-0.0506954509978;VSX1,2:-0.0530562263515;SOX2:-0.05546735448;MTF1:-0.0811647606314;NKX3-2:-0.0862233252348;PRDM1:-0.0964976587916;NHLH1,2:-0.0971489992061;TLX1..3_NFIC{dimer}:-0.102848710102;TOPORS:-0.104923434688;POU6F1:-0.109161703546;MAZ:-0.114128639565;GZF1:-0.118886858545;TFAP2{A,C}:-0.145417920659;RUNX1..3:-0.147827636897;NR1H4:-0.155633437029;ARID5B:-0.158398635553;HMGA1,2:-0.167685211437;TFAP2B:-0.174132856164;TFCP2:-0.181718842817;SRF:-0.186760224633;HNF1A:-0.187629328667;HLF:-0.196961801101;EBF1:-0.200913677744;ETS1,2:-0.202494887825;SPIB:-0.211619958847;BREu{core}:-0.221881399345;BPTF:-0.224172834084;ALX4:-0.228047263728;TP53:-0.244429766022;NR3C1:-0.253698351265;FOXP3:-0.254030509923;E2F1..5:-0.25603120118;RFX1:-0.257710211689;STAT2,4,6:-0.25817862183;DBP:-0.258659123842;CREB1:-0.259617670484;RXRA_VDR{dimer}:-0.261712426063;GATA4:-0.266386678;GCM1,2:-0.27438584674;PAX4:-0.299345218642;NR6A1:-0.31308773317;GATA6:-0.313881139056;PAX6:-0.318605130931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323136934368;MEF2{A,B,C,D}:-0.335593906344;FOXO1,3,4:-0.341714127817;MYBL2:-0.342737253554;ESR1:-0.345062774887;TAL1_TCF{3,4,12}:-0.349489860817;FOXL1:-0.354911461103;AIRE:-0.357863357415;LMO2:-0.366182172824;KLF4:-0.373130270084;PAX5:-0.376765185442;XCPE1{core}:-0.397239737836;DMAP1_NCOR{1,2}_SMARC:-0.398503952551;AR:-0.424977359835;MTE{core}:-0.430428766404;SPI1:-0.437106748677;TFAP4:-0.446602714437;NFATC1..3:-0.454785175546;POU2F1..3:-0.456220560202;HNF4A_NR2F1,2:-0.457583689455;JUN:-0.469587325869;SP1:-0.503074497223;NFE2L1:-0.503891352478;HIC1:-0.538253253143;IKZF1:-0.550702764843;NFIX:-0.553725755518;SREBF1,2:-0.559097285579;SOX{8,9,10}:-0.572874551705;GFI1B:-0.57648580549;TGIF1:-0.614140033892;ATF6:-0.619899342905;UFEwm:-0.622822711755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.629151601978;HAND1,2:-0.686208474575;PBX1:-0.694094861013;NR5A1,2:-0.70330883458;NFY{A,B,C}:-0.712212591027;MYFfamily:-0.72517803714;ZNF384:-0.729728415863;MAFB:-0.757368417156;ATF2:-0.777833402634;GFI1:-0.805644699536;IKZF2:-0.817694429667;EP300:-0.826233193677;ZNF238:-0.880662253901;POU5F1:-0.901477127199;TBP:-0.904146336713;NKX2-2,8:-0.910758493892;ZNF423:-1.01527660746;HMX1:-1.02459720973;PAX1,9:-1.14658729991;NANOG{mouse}:-1.14706393227;POU3F1..4:-1.32129312148;T:-1.47022655709;SMAD1..7,9:-1.56588400523
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10509-107D5;search_select_hide=table117:FF:10509-107D5
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:large cell lung carcinoma cell line:IA-LM
Species:Human (Homo sapiens)
Library ID:CNhs11277
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age68
cell typeunclassifiable
cell lineIA-LM
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005401
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11277 CAGE DRX007911 DRR008783
Accession ID Hg19

Library idBAMCTSS
CNhs11277 DRZ000208 DRZ001593
Accession ID Hg38

Library idBAMCTSS
CNhs11277 DRZ011558 DRZ012943
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0693
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.185
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0436
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0941
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.126
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0436
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.203
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.909
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0279
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0436
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0436
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.042
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.354
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus2.075309e-4
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0436
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0436
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11277

Jaspar motifP-value
MA0002.20.456
MA0003.10.286
MA0004.10.758
MA0006.10.212
MA0007.10.64
MA0009.10.582
MA0014.10.797
MA0017.10.25
MA0018.20.149
MA0019.10.396
MA0024.10.0417
MA0025.10.134
MA0027.10.404
MA0028.11.07156e-4
MA0029.10.177
MA0030.10.118
MA0031.19.42722e-4
MA0035.20.296
MA0038.10.415
MA0039.20.693
MA0040.10.678
MA0041.10.76
MA0042.10.587
MA0043.10.853
MA0046.10.46
MA0047.20.046
MA0048.10.0519
MA0050.10.213
MA0051.15.6859e-4
MA0052.10.0663
MA0055.10.00185
MA0057.10.554
MA0058.10.67
MA0059.10.222
MA0060.10.82
MA0061.10.683
MA0062.25.65764e-4
MA0065.20.206
MA0066.10.756
MA0067.10.24
MA0068.10.00197
MA0069.10.631
MA0070.10.704
MA0071.10.609
MA0072.10.249
MA0073.10.498
MA0074.10.158
MA0076.13.84067e-4
MA0077.10.488
MA0078.10.706
MA0079.20.49
MA0080.27.56559e-6
MA0081.10.694
MA0083.10.918
MA0084.10.427
MA0087.10.747
MA0088.10.00163
MA0090.10.375
MA0091.10.0207
MA0092.10.332
MA0093.10.917
MA0099.21.61703e-16
MA0100.10.68
MA0101.10.222
MA0102.20.223
MA0103.10.0494
MA0104.20.0352
MA0105.10.143
MA0106.10.552
MA0107.10.603
MA0108.25.23616e-4
MA0111.10.555
MA0112.20.079
MA0113.10.241
MA0114.10.551
MA0115.10.961
MA0116.10.794
MA0117.10.893
MA0119.10.779
MA0122.10.877
MA0124.10.466
MA0125.10.34
MA0131.10.584
MA0135.10.0298
MA0136.10.0627
MA0137.20.0109
MA0138.20.363
MA0139.10.071
MA0140.10.0355
MA0141.10.0772
MA0142.10.0638
MA0143.10.813
MA0144.10.398
MA0145.10.1
MA0146.10.621
MA0147.10.0074
MA0148.10.00769
MA0149.10.404
MA0150.10.00642
MA0152.10.957
MA0153.10.202
MA0154.10.59
MA0155.10.44
MA0156.10.583
MA0157.19.75701e-4
MA0159.10.639
MA0160.10.477
MA0162.10.691
MA0163.10.097
MA0164.10.196
MA0258.10.343
MA0259.10.0479



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11277

Novel motifP-value
10.784
100.385
1000.789
1010.372
1020.657
1030.305
1040.685
1050.709
1060.388
1070.795
1080.394
1090.894
110.504
1100.578
1110.0633
1120.0793
1130.704
1140.862
1150.0523
1160.17
1170.00673
1180.767
1190.533
120.474
1200.0892
1210.927
1220.656
1230.373
1240.854
1250.582
1260.925
1270.976
1280.143
1290.972
130.267
1300.371
1310.842
1320.879
1330.1
1340.586
1350.0331
1360.211
1370.931
1380.486
1390.949
140.379
1400.264
1410.66
1420.18
1430.764
1440.696
1450.15
1460.159
1470.932
1480.0469
1490.126
150.851
1500.825
1510.352
1520.971
1530.28
1540.857
1550.531
1560.727
1570.676
1580.335
1590.0564
160.258
1600.481
1610.925
1620.988
1630.0339
1640.933
1650.728
1660.306
1670.641
1680.625
1690.41
170.625
180.908
190.022
20.0148
201.79696e-4
210.688
220.298
230.00545
240.358
250.229
260.795
270.0507
280.128
290.117
30.563
300.407
310.474
328.76076e-4
330.744
340.196
350.167
360.15
370.643
380.568
390.343
40.0536
400.675
410.202
420.111
430.827
440.0852
450.254
460.915
470.726
480.938
490.438
50.737
500.481
510.104
520.183
530.867
540.295
550.58
560.914
570.381
580.913
590.477
60.931
600.159
610.0528
620.489
630.817
640.306
650.00621
662.77038e-6
670.263
680.996
690.862
70.913
700.337
710.785
720.526
730.748
740.644
750.0161
760.00274
770.161
780.609
790.249
80.194
800.408
810.619
820.202
830.115
840.386
850.361
860.44
870.241
880.822
890.0339
90.275
900.799
910.0588
920.777
930.793
940.628
950.441
960.38
970.546
980.708
990.859



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11277


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
4556 (lung large cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102205 (large cell lung cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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