FF:10444-106F3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |CNhs11248= | ||
| | |DRA_sample_Accession=CAGE@SAMD00005163 | ||
| | |HumanCAGEScanFiles=NCig10059;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX007897;DRR008769;DRZ000194;DRZ001579;DRZ011544;DRZ012929!CAGE;DRX007898;DRR008770;DRZ000195;DRZ001580;DRZ011545;DRZ012930 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101530,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0100016 | |||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.45!279.92!LHX9;;chr7:27205136..27205164,-!p1@HOXA9!1.87!72.80!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.74!54.18!HOXB6;;chr2:176969228..176969260,+!p1@HOXD11!1.65!43.41!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.59!37.76!MKX;;chr2:176969179..176969226,+!p2@HOXD11!1.53!32.53!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.39!23.54!HOXA9;;chr8:60031934..60031986,-!p6@TOX!1.35!21.55!TOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.07!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!1.28!17.99!HOXD11;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.78!HOXB3;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.72!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!1.21!178.24!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.21!24.58!TOX;;chr17:46692318..46692362,-!p5@HOXB8!1.21!15.06!HOXB8;;chr15:37392094..37392116,-!p6@MEIS2!1.20!18.31!MEIS2;;chr17:46692457..46692484,-!p2@HOXB8!1.20!14.96!HOXB8;;chr5:134369905..134369972,-!p1@PITX1!1.17!21.13!PITX1;;chr8:60031809..60031835,-!p4@TOX!1.16!17.15!TOX;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.07!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.13!33.89!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr8:60031619..60031676,-!p1@TOX!1.12!26.57!TOX;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.18!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!1.10!11.51!HOXB6;;chr1:151032922..151032951,+!p2@MLLT11!1.09!19.04!MLLT11;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.77!KDM5D;;chr17:17726907..17726958,-!p2@SREBF1!1.06!65.80!SREBF1;;chr8:60031840..60031869,-!p5@TOX!1.06!10.36!TOX;;chr8:60031762..60031803,-!p3@TOX!1.05!14.96!TOX;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.25!BNC2;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.62!ZIC1;;chr7:27212501..27212513,-!p5@HOXA10!1.02!9.52!HOXA10;;chr15:37392724..37392757,-!p1@MEIS2!1.00!42.15!MEIS2;;chr10:28032421..28032494,-!p2@MKX!1.00!9.00!MKX;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.79!ZIC1;;chr8:11561684..11561751,+!p1@GATA4!0.98!8.58!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.46!CREB3L1;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.23!RUNX1;;chr17:46692624..46692659,-!p3@HOXB8!0.97!8.37!HOXB8;;chr10:28034395..28034404,-!p9@MKX!0.97!8.37!MKX;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.30!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.16!TBX1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.16!HOXB8;;chr3:69915385..69915438,+!p3@MITF!0.95!7.85!MITF;;chr1:151032142..151032195,+!p5@MLLT11!0.94!15.17!MLLT11;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.64!ZIC2;;chr3:114343768..114343822,-!p1@ZBTB20!0.93!33.79!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.93!15.27!ZBTB20;;chr2:176969124..176969155,+!p5@HOXD11!0.91!7.11!HOXD11;;chr17:46692287..46692317,-!p7@HOXB8!0.91!7.11!HOXB8;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.87!14.23!SATB2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.38!SOX11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.86!66.00!GLIS2;;chr15:37392534..37392562,-!p10@MEIS2!0.85!6.69!MEIS2;;chr9:126774018..126774055,+!p1@LHX2!0.85!6.07!LHX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.84!30.96!NFE2L3;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.47!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.91!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.84!9.41!TSHZ3;;chr17:46622205..46622218,-!p3@HOXB2!0.84!7.01!HOXB2;;chr17:46667628..46667642,-!p2@HOXB3!0.84!5.86!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.84!5.86!MAFK;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.86!HOXC5;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.46!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!0.82!7.64!SOX18;;chr7:28220198..28220269,-!p2@JAZF1!0.81!52.41!JAZF1;;chr5:133450365..133450444,+!p1@TCF7!0.81!26.88!TCF7;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.59!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.44!ZFY;;chr12:124873852..124873881,-!p3@NCOR2!0.80!34.73!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.16!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.74!HOXB7;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.65!SHOX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.78!8.89!CREB3L1;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.64!SATB2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.92!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.25!MYBL2;;chr15:37392593..37392607,-!p13@MEIS2!0.76!5.86!MEIS2;;chr16:51185172..51185197,-!p1@SALL1!0.76!4.81!SALL1;;chr3:147111198..147111225,+!p4@ZIC1!0.76!4.81!ZIC1;;chr3:69915369..69915381,+!p4@MITF!0.76!4.71!MITF;;chr1:151032782..151032801,+!p4@MLLT11!0.75!9.94!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!0.75!5.65!ZNF365;;chr1:3569072..3569093,+!p1@TP73!0.75!4.60!TP73;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.69!MEIS2;;chr1:151032739..151032748,+!p6@MLLT11!0.74!5.86!MLLT11;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.50!HOXC13;;chr7:28725740..28725778,+!p1@CREB5!0.73!43.20!CREB5;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.37!NFIX;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr3:69811882..69811898,+!p6@MITF!0.73!4.39!MITF;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.39!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.39!NKX2-5;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.65!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.72!5.23!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.72!4.29!LHX9;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.20!MYBL2;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.73!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.71!5.96!HOXB7;;chr18:53068911..53068935,-!p4@TCF4!0.71!4.71!TCF4;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.08!MEIS1;;chr10:102505493..102505546,+!p2@PAX2!0.71!4.08!PAX2;;chr13:100634130..100634143,+!p3@ZIC2!0.71!4.08!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.70!46.55!SOX9;;chr1:247171316..247171336,-!p3@ZNF695!0.70!6.28!ZNF695;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.96!E2F7;;chr12:125002827..125002855,-!p5@NCOR2!0.69!5.86!NCOR2;;chr17:46622229..46622257,-!p6@HOXB2!0.69!4.71!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.68!27.82!GLIS3;;chr17:46692603..46692621,-!p6@HOXB8!0.68!3.77!HOXB8;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.66!PRRX1;;chr22:22874610..22874616,-!p1@ZNF280A!0.67!3.66!ZNF280A;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr3:107244229..107244254,+!p3@BBX!0.66!6.38!BBX;;chr3:181429704..181429722,+!p1@SOX2!0.66!3.56!SOX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.66!3.56!TFAP2A;;chr19:21264991..21265026,+!p1@ZNF714!0.65!26.57!ZNF714;;chr8:67525443..67525459,-!p2@MYBL1!0.65!5.54!MYBL1;;chr14:33408072..33408114,+!p2@NPAS3!0.65!4.18!NPAS3;;chr13:100623375..100623425,-!p1@ZIC5!0.65!3.45!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.64!172.39!TP53;;chr5:176738887..176738934,-!p1@MXD3!0.64!26.05!MXD3;;chr9:130954041..130954121,-!p2@CIZ1!0.64!16.84!CIZ1;;chr12:54393880..54393962,+!p1@HOXC9!0.64!3.35!HOXC9;;chr17:46667561..46667572,-!p4@HOXB3!0.64!3.35!HOXB3;;chr7:77428149..77428220,+!p1@PHTF2!0.63!39.33!PHTF2;;chr20:32274179..32274213,-!p1@E2F1!0.63!25.52!E2F1;;chr15:37392616..37392638,-!p2@MEIS2!0.63!11.82!MEIS2;;chr2:42721205..42721307,+!p4@MTA3!0.63!3.24!MTA3;;chr1:170632959..170632987,+!p4@PRRX1!0.62!3.56!PRRX1;;chr3:114343870..114343887,-!p9@ZBTB20!0.62!3.14!ZBTB20;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.03!PBX3;;chr16:1429627..1429662,-!p2@UNKL!0.61!10.36!UNKL;;chr21:36259445..36259519,-!p4@RUNX1!0.61!9.83!RUNX1;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.92!NFIX;;chr2:66662281..66662308,+!p1@MEIS1!0.60!11.92!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.60!6.90!VAX2;;chr15:80696703..80696754,+!p1@ARNT2!0.60!4.18!ARNT2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.59!16.42!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.59!15.90!FOXD1;;chr16:29818199..29818216,+!p11@MAZ!0.59!5.23!MAZ;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.93!SEBOX;;chr18:53253323..53253359,-!p19@TCF4!0.59!2.93!TCF4;;chr6:28321971..28321995,-!p1@ZNF323!0.59!2.93!ZNF323;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.22!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.58!39.75!NCOR2;;chr16:69599899..69599919,+!p2@NFAT5!0.58!39.33!NFAT5;;chr17:40477163..40477183,-!p7@STAT3!0.58!2.82!STAT3;;chr14:33403881..33403924,+!p1@NPAS3!0.58!2.82!NPAS3;;chr15:37390482..37390572,-!p7@MEIS2!0.57!3.97!MEIS2;;chr10:28032548..28032559,-!p7@MKX!0.57!2.72!MKX;;chr11:19262421..19262455,-!p3@E2F8!0.57!2.72!E2F8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.57!2.72!HOXC5;;chr9:124991204..124991246,-!p1@LHX6!0.57!2.72!LHX6;;chr2:172949484..172949522,+!p1@DLX1!0.57!2.72!DLX1;;chr3:147124307..147124336,-!p2@ZIC4!0.57!2.72!ZIC4;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.68!PCBP4;;chr3:147111231..147111281,+!p3@ZIC1!0.56!2.62!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.56!2.62!PITX2;;chr13:100638100..100638115,+!p4@ZIC2!0.56!2.62!ZIC2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.62!ZNF668;;chr7:27212407..27212421,-!p9@HOXA10!0.56!2.62!HOXA10;;chr1:42384532..42384603,-!p2@HIVEP3!0.56!2.62!HIVEP3;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.76!TCF3;;chr19:21265028..21265052,+!p2@ZNF714!0.55!5.23!ZNF714;;chr1:197886665..197886732,+!p3@LHX9!0.55!2.51!LHX9;;chr3:157824001..157824078,-!p2@SHOX2!0.55!2.51!SHOX2;;chrY:21906761..21906810,-!p2@KDM5D!0.55!2.51!KDM5D;;chr10:105110831..105110885,-!p1@PCGF6!0.54!30.02!PCGF6;;chr19:19729477..19729542,-!p1@PBX4!0.54!6.07!PBX4;;chr16:68573640..68573660,+!p3@ZFP90!0.54!3.56!ZFP90;;chr17:41623692..41623715,-!p1@ETV4!0.53!12.76!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.69!PAWR;;chr3:69811858..69811881,+!p5@MITF!0.53!2.41!MITF;;chr6:31126291..31126399,+!p1@TCF19!0.52!28.45!TCF19;;chr19:38720294..38720348,-!p1@DPF1!0.52!3.03!DPF1;;chr7:27239703..27239715,-!p1@HOXA13!0.52!2.30!HOXA13;;chr2:176994408..176994492,+!p1@HOXD8!0.52!2.30!HOXD8;;chr19:3366570..3366619,+!p1@NFIC!0.51!93.31!NFIC;;chr7:19157043..19157088,-!p2@TWIST1!0.51!6.80!TWIST1;;chr9:99180617..99180658,-!p1@ZNF367!0.51!5.75!ZNF367;;chr7:64023410..64023428,-!p2@ZNF680!0.51!3.97!ZNF680;;chr21:36260980..36261011,-!p1@RUNX1!0.50!82.22!RUNX1;;chr11:65667846..65667868,-!p1@FOSL1!0.50!76.26!FOSL1;;chr19:6110474..61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| |||
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | |||
| | |||
| | |||
| | |||
|fonse_cell_line=FF:0100255 | |fonse_cell_line=FF:0100255 | ||
|fonse_cell_line_closure=FF:0100255 | |fonse_cell_line_closure=FF:0100255 | ||
Line 66: | Line 42: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10444-106F3 | |||
|is_a=EFO:0002091;;FF:0000210;;FF:0100016 | |||
|is_obsolete= | |||
|library_id=CNhs11248!CNhs11185 | |||
|library_id_phase_based=2:CNhs11248 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10444 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10444 | |||
|name=glioblastoma cell line:A172 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=NCig10059,,, | |||
|profile_hcage=CNhs11248 & CNhs11185,LSID757,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0216030789840009,0,0.213551915039506,0,0,-0.117111872118384,0,-0.189206101350065,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.063993701415957,0.483390479738179,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.152290603994904,0,0,0,0,0,0,0,0,0.0350510189794052,0,0,0,0,0,0.065794482596777,0.0432061579680018,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0184382055811747,0.0412500915278073,0,0,0,0,0.00767490382307046,0.0432061579680018,0,0,0,0.188393196305576,0.2284967981363,0,0.0825001830556145,0,0.353191640346941,-0.0548291932697047,-0.116874121816894,0,0,0,0.118532080184479,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0335204234106527,0.0432061579680018,0,0,-0.0530984638575231,-0.17132770826406,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0548291932697047,0,0.353191640346941,0.151802208584906,0,0.0825001830556145,0,0,0,0.0825001830556145,0,0,0.196592195639305,0.0592660400922395,0.435094911912006,-0.0610149594678574,0,0,0.345193981768887,0,0,0,0,0.0432061579680018,0,0.0432061579680018,0.0432061579680018,0,0.225071773394376,0,0.0681195285951641,0,0,0,0,0.120197117842589,0.184775249990577,0,-0.0301976832622671,-0.0251381031093664,0,0,0,0,0.0514981482384834,0,-0.0776733258257389,-0.0827201683234173,0.0424556664568762,-0.266450048371738,0.0267876862744326,0,0,0,-0.47880338016716,-0.0185594096830227,0,0,-0.100176772767873,0.0621389958857765,0,0,-0.391044581551635,0,-0.356007026544581,0.0698303226948037,0,0.0652324005467585,0,0,0.0432061579680018,0,0,0,0,0,0.0825001830556145,0,0,-0.0358903878374357,0.0827827251475278,0,0.0432061579680018,0.151802208584906,0,0.227292059015012,0.0432061579680018,0.0373054650788971,-0.290785972900952,0.0184887792896246,0.181677223326039,0.126998991099773,0.00252630038304782,0.0704922795405045,-0.038212189856532,0.113848162173917,-0.137874703678767,-0.147401849371139,0.0486213100467051,0.058950049822244,0.0157978144844607,0.170587966776234,0.231344085278818,-0.010901174959278,0.120178399833037,0.109443320007791,0.316732391905209,0,0.0432061579680018,0.0212768103507592,-0.0332876349688779,0,0.0621607570518241,0.000132766412210938,0.0461239604398637,-0.0381506343800856,-0.0473920016933843,0.200341540846695,0.121012427447513,-0.0395325284566706,-0.0476651310700981,0.100516131620047,0.291707928015539,0.00767490382307046,0,0,0.0363564676445133,0.288856661490007,0.0118149466158918,0.0432061579680018,-0.483977461810981,-0.0683442610773682,0.0216030789840009,-0.340921017362894,-0.0946811513296424,0.0432061579680018,0,-0.118954999195675,0,0,0.161351775597662,0,0.0432061579680018,0.149521599851628,-0.251371387255681,0.00574746804100762,0,-0.146967406000462,0.0216030789840009,0.226487309214416,0,0.107869448829172,0.214557022986365,-0.0340068978016094,-0.111759575929097,0,-0.125044593383857,0.00916003673363475,-0.044556408880931,0.413787438304599,0.713605840419913,-0.320700611949234,-0.0398922666125153,0.188393196305576,0.667656183671908,0,0.402120648413697,0,0.431697701626264,-0.085229400809097,0.00250382133755456,-0.0215854552954665,0.0432061579680018,0.153533110494419,0,-0.0437796617096975,0,0.213515449662438,-0.54043375147324,-0.175222120021003,-0.101858114228558,0.0240929622179001,-0.238909496438742,-0.29788345688499,0,0.200596874515764,0,0.211552238067171,0.00143512525026659,0.145060648622843,-0.190047348880588,0.104499157767241,0,0.00441780900483701,0,0,-0.100109337675397,-0.0239237996972173,0,0.0314492031763138,0.0184382055811747,0.0234250785992763,-0.0727649154669323,0,0,-0.357579582218239,0,0,0.0527030033701028,0.185077429690516,0.754943355343169,0.0575853295762955,0.0432061579680018,0.0576601725870265,0,0,-0.0950275829095611,0.0432061579680018,0.113293298063782,0,0.0432061579680018,0.0607804833480102,0,0,0.0216030789840009,0.238603029596552,0.0216030789840009,0.0432061579680018,-0.0157503530173544,0,0,0,0,0.0432061579680018,-0.0597612673753267,0.177394158717733,0,0.12638427014222,0,0,0,0,0,0,0,0.931020555792757,0.543674279581808,0.0186866978067187,-0.12301741567642,0.0592660400922395,0,0,0,-0.13322321949786,0.0353664675018286,0,0.0199395020872742,0,0.0216030789840009,0.118532080184479,0,0.0965629717607663,0,0,0,0.075901104292453,-0.0145242990856622,-0.0743945462531388,0,0,0,-0.27695440160179,0,0,0,0.0086395420633454,0.0338865309807601,0,0.0538911130477687,0.0432061579680018,0,-0.0573146363508392,0.2716097608001,0.0083546933475575,-0.0127498906301336,0.178954902041748,0.622973663659653,0,0,0.321202192782583,0,0.0432061579680018,0.23780870298739,0,0.0432061579680018,0.0203253155816903,0,0,0,0,0.211552238067171,0,-0.0957824322152766,0.0432061579680018,0,0,0,0,0.0825001830556145,0,0,0,0,0,-0.0611729891169803,0.0595781519263955,0,0,0,0,0,0,0,-0.0241060230789031,-0.105918687414882,0.0216030789840009,0,0,0,0,0,0,0,0.122842791149185,0,0,0,0,0,-0.0969923612426051,0,0.0432061579680018,0,0.0432061579680018,-0.564807121153884,0,0,0.0107586235809714,0,0.0392884761865658,0,0,0,0,0,0,0,0,0,0,0,0.0593848755145299,-0.189206101350065,0,0.0432061579680018,0,0,0,0,0,-0.231627140238089,0,0,0,0,-0.0706782157409754,0.427103830079012,0,0,0.0779075767608212,0,-0.117111872118384,0,0,0,0,0,0.0432061579680018,0.0412500915278073,0.0216030789840009,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535510337801671,0,-0.104503554422932,0.043128935258242,0,0,0.0197198552802358,0,0,0,0,0,0,0.0445606802639259,0,0,0,0,0,0,0,0.0216030789840009,0,0,0,0,0,0,0,0,0,0,0.0432061579680018,0,0,0,0,0,0.091351980774989,0.0389411730946893,0,0,0,0,0.459822231675737,0,0,-0.0979578962680575,0,0,-0.0704297308165253,0,0.00333849716269018,0,0.0144774565047815,0,0,0.0606067921723165,0.840402127962742,0.1212400664085,0,0,0,-0.0131354809546477,0,0,0.0769427226637887,0.0432061579680018,0.0850248211660046,0,0,0,0,0,0,0,0,0,0,0,0.0216030789840009,0,0,0,0,0,0.043206157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| |||
|rna_box=106 | |||
|rna_catalog_number= | |||
|rna_concentration=1.48705 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.62 | |||
|rna_od260/280=2.11 | |||
|rna_position=F3 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=106F3 | |||
|rna_weight_ug=37.17625 | |||
|sample_age=unknown | |||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2530 | |||
|sample_cell_line=A172 | |||
|sample_cell_lot= | |||
|sample_cell_type=glioblast | |||
|sample_collaboration=Yukio Nakamura (RIKEN BRC) | |||
|sample_company=RIKEN Bioresource centre | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease=glioblastoma | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=unknown | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.68176541496784e-250!GO:0043226;organelle;6.80147421639275e-204!GO:0043229;intracellular organelle;2.16007870712468e-203!GO:0043231;intracellular membrane-bound organelle;1.96092540879511e-192!GO:0043227;membrane-bound organelle;2.7267530839532e-192!GO:0005737;cytoplasm;1.8000481032167e-180!GO:0044422;organelle part;4.0215791654499e-157!GO:0044446;intracellular organelle part;1.38090874600734e-155!GO:0044444;cytoplasmic part;9.76405127893327e-123!GO:0032991;macromolecular complex;2.22236451049804e-111!GO:0005515;protein binding;9.42070845453552e-88!GO:0005634;nucleus;1.14407879740805e-86!GO:0030529;ribonucleoprotein complex;3.5973898204713e-85!GO:0044428;nuclear part;9.76837470726168e-83!GO:0044238;primary metabolic process;2.38099873506112e-80!GO:0043170;macromolecule metabolic process;4.10910378822318e-80!GO:0044237;cellular metabolic process;8.78137242534347e-80!GO:0003723;RNA binding;3.70502921155095e-73!GO:0043233;organelle lumen;4.43945880975201e-71!GO:0031974;membrane-enclosed lumen;4.43945880975201e-71!GO:0043234;protein complex;2.34229088235189e-59!GO:0016043;cellular component organization and biogenesis;9.3176509388943e-59!GO:0005739;mitochondrion;2.28112925089308e-53!GO:0006396;RNA processing;3.57198770791057e-49!GO:0043283;biopolymer metabolic process;5.59122361390724e-49!GO:0019538;protein metabolic process;1.38435659093843e-48!GO:0005840;ribosome;2.07049360967735e-48!GO:0031981;nuclear lumen;3.68397021780715e-47!GO:0043228;non-membrane-bound organelle;3.22331468821873e-46!GO:0043232;intracellular non-membrane-bound organelle;3.22331468821873e-46!GO:0031090;organelle membrane;5.54786930024609e-46!GO:0006412;translation;1.30480752573186e-44!GO:0033036;macromolecule localization;6.43279208439499e-44!GO:0044260;cellular macromolecule metabolic process;2.50198753039799e-43!GO:0044267;cellular protein metabolic process;5.25566938613363e-43!GO:0015031;protein transport;1.58620111643272e-42!GO:0003735;structural constituent of ribosome;4.72405860964698e-42!GO:0016071;mRNA metabolic process;3.16712569516306e-40!GO:0031975;envelope;7.49590057725178e-40!GO:0031967;organelle envelope;8.28306475392206e-40!GO:0008104;protein localization;9.37811822235701e-40!GO:0006996;organelle organization and biogenesis;1.37015754558342e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.51865871484751e-39!GO:0045184;establishment of protein localization;6.36843660593463e-39!GO:0046907;intracellular transport;2.00311618923919e-38!GO:0010467;gene expression;2.9045075524329e-38!GO:0006259;DNA metabolic process;3.56627386692038e-38!GO:0008380;RNA splicing;1.4678095502907e-37!GO:0044429;mitochondrial part;6.48929169467744e-37!GO:0005829;cytosol;2.08485490639354e-36!GO:0006397;mRNA processing;5.96078109639288e-36!GO:0033279;ribosomal subunit;1.4301676874267e-35!GO:0009059;macromolecule biosynthetic process;2.04327851830304e-32!GO:0009058;biosynthetic process;6.31057768342999e-32!GO:0065003;macromolecular complex assembly;1.37604625312798e-31!GO:0005654;nucleoplasm;2.84326912692801e-31!GO:0044249;cellular biosynthetic process;4.00383718786278e-31!GO:0000166;nucleotide binding;5.63557472768063e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.21014756494433e-29!GO:0022607;cellular component assembly;1.71229932611519e-28!GO:0007049;cell cycle;2.04019161011433e-28!GO:0006886;intracellular protein transport;1.15996076614495e-27!GO:0005681;spliceosome;1.09482530482873e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.19447512066197e-26!GO:0051649;establishment of cellular localization;7.10139348149687e-26!GO:0051641;cellular localization;8.69140687487214e-26!GO:0044451;nucleoplasm part;4.9787744008163e-25!GO:0005740;mitochondrial envelope;9.30978514255769e-25!GO:0016462;pyrophosphatase activity;1.2589992478048e-24!GO:0017111;nucleoside-triphosphatase activity;1.53504702364429e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.56934674776114e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;2.29118638107744e-24!GO:0003676;nucleic acid binding;4.76344744434914e-24!GO:0031966;mitochondrial membrane;1.81708436821605e-23!GO:0019866;organelle inner membrane;2.7118150042436e-23!GO:0044445;cytosolic part;2.3431365546004e-22!GO:0006974;response to DNA damage stimulus;1.6345201977585e-21!GO:0006119;oxidative phosphorylation;3.02031879296121e-21!GO:0032553;ribonucleotide binding;4.07695250700136e-21!GO:0032555;purine ribonucleotide binding;4.07695250700136e-21!GO:0005743;mitochondrial inner membrane;5.05052954427877e-21!GO:0000278;mitotic cell cycle;2.22922303323193e-20!GO:0012505;endomembrane system;4.33914663044533e-20!GO:0017076;purine nucleotide binding;7.07103809065383e-20!GO:0005694;chromosome;1.148259592658e-19!GO:0022402;cell cycle process;1.4557660058255e-19!GO:0006512;ubiquitin cycle;3.3309927155487e-19!GO:0015935;small ribosomal subunit;3.8551583779894e-19!GO:0006281;DNA repair;5.70824189366548e-19!GO:0006457;protein folding;1.24783522012262e-18!GO:0022618;protein-RNA complex assembly;1.62344100490196e-18!GO:0051301;cell division;3.26664788131772e-18!GO:0044455;mitochondrial membrane part;3.58054631250479e-18!GO:0044427;chromosomal part;8.1781066754442e-18!GO:0005524;ATP binding;1.66744823114798e-17!GO:0015934;large ribosomal subunit;1.66744823114798e-17!GO:0051276;chromosome organization and biogenesis;1.67130798624697e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.81460391678767e-17!GO:0000087;M phase of mitotic cell cycle;3.15223041814442e-17!GO:0032559;adenyl ribonucleotide binding;3.5618394592061e-17!GO:0048770;pigment granule;3.92717087227661e-17!GO:0042470;melanosome;3.92717087227661e-17!GO:0007067;mitosis;6.28715442286302e-17!GO:0044265;cellular macromolecule catabolic process;1.99864981198676e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.81262069041336e-16!GO:0006260;DNA replication;2.92638356082692e-16!GO:0005730;nucleolus;3.32165509039115e-16!GO:0016070;RNA metabolic process;3.40952317175121e-16!GO:0008134;transcription factor binding;4.70403825945074e-16!GO:0005783;endoplasmic reticulum;4.93559071729907e-16!GO:0044257;cellular protein catabolic process;5.0287697519873e-16!GO:0019941;modification-dependent protein catabolic process;5.90348446003629e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.90348446003629e-16!GO:0016874;ligase activity;5.91814025716823e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.92091397113997e-16!GO:0030554;adenyl nucleotide binding;7.71616278966434e-16!GO:0005794;Golgi apparatus;8.78760404092678e-16!GO:0043285;biopolymer catabolic process;8.840402915436e-16!GO:0005635;nuclear envelope;9.47259739590281e-16!GO:0005746;mitochondrial respiratory chain;1.20535016654166e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.11062620247926e-15!GO:0043412;biopolymer modification;2.49346634205755e-15!GO:0022403;cell cycle phase;6.16474843264516e-15!GO:0048193;Golgi vesicle transport;7.82933117008542e-15!GO:0008135;translation factor activity, nucleic acid binding;8.16710487338612e-15!GO:0015630;microtubule cytoskeleton;1.20705262590684e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.27266834224501e-14!GO:0003954;NADH dehydrogenase activity;1.27266834224501e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.27266834224501e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.54550162625761e-14!GO:0000375;RNA splicing, via transesterification reactions;1.54550162625761e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.54550162625761e-14!GO:0031980;mitochondrial lumen;2.07496846645498e-14!GO:0005759;mitochondrial matrix;2.07496846645498e-14!GO:0009057;macromolecule catabolic process;2.33863372991905e-14!GO:0016887;ATPase activity;3.92563496835194e-14!GO:0030163;protein catabolic process;3.92563496835194e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.06835460840135e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.43369722990201e-14!GO:0016192;vesicle-mediated transport;5.49444857311857e-14!GO:0044432;endoplasmic reticulum part;5.96046338206895e-14!GO:0031965;nuclear membrane;6.26403144080167e-14!GO:0005761;mitochondrial ribosome;7.05835749850006e-14!GO:0000313;organellar ribosome;7.05835749850006e-14!GO:0042623;ATPase activity, coupled;1.17806916648013e-13!GO:0006464;protein modification process;1.57353875373599e-13!GO:0051082;unfolded protein binding;1.83333339175297e-13!GO:0009719;response to endogenous stimulus;2.11909397959677e-13!GO:0006323;DNA packaging;2.39141697816194e-13!GO:0044453;nuclear membrane part;2.90298620377076e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.71186559205295e-13!GO:0042773;ATP synthesis coupled electron transport;4.71186559205295e-13!GO:0000279;M phase;5.52376293579897e-13!GO:0016604;nuclear body;6.36441242436513e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.64182547902247e-13!GO:0045271;respiratory chain complex I;7.64182547902247e-13!GO:0005747;mitochondrial respiratory chain complex I;7.64182547902247e-13!GO:0006605;protein targeting;1.01519509395683e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.00074292760493e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.38010887012645e-12!GO:0004386;helicase activity;2.48475719551366e-12!GO:0043687;post-translational protein modification;1.10176481487873e-11!GO:0051186;cofactor metabolic process;2.0523487899925e-11!GO:0042254;ribosome biogenesis and assembly;2.47800225560896e-11!GO:0003743;translation initiation factor activity;3.51871895732775e-11!GO:0003712;transcription cofactor activity;3.57604215173769e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.62416814630027e-11!GO:0044248;cellular catabolic process;3.72780667715415e-11!GO:0006413;translational initiation;5.20606002624852e-11!GO:0006366;transcription from RNA polymerase II promoter;8.4693411909599e-11!GO:0006913;nucleocytoplasmic transport;1.61057364311972e-10!GO:0008026;ATP-dependent helicase activity;2.05807253348508e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.0815263600741e-10!GO:0016607;nuclear speck;2.09266024088566e-10!GO:0016568;chromatin modification;2.13076676329783e-10!GO:0005643;nuclear pore;2.31660029843884e-10!GO:0008639;small protein conjugating enzyme activity;3.16119124843236e-10!GO:0051169;nuclear transport;4.45187227118257e-10!GO:0006403;RNA localization;5.50821627695618e-10!GO:0050657;nucleic acid transport;6.48771254570721e-10!GO:0051236;establishment of RNA localization;6.48771254570721e-10!GO:0050658;RNA transport;6.48771254570721e-10!GO:0004842;ubiquitin-protein ligase activity;8.11900771493475e-10!GO:0005789;endoplasmic reticulum membrane;8.6581465057035e-10!GO:0019787;small conjugating protein ligase activity;1.10871200021657e-09!GO:0051726;regulation of cell cycle;1.27133028719451e-09!GO:0000074;regulation of progression through cell cycle;1.61131322412821e-09!GO:0000785;chromatin;1.62728754428217e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.68252060995716e-09!GO:0008565;protein transporter activity;1.68252060995716e-09!GO:0005819;spindle;1.72940309810664e-09!GO:0006446;regulation of translational initiation;2.38926680896284e-09!GO:0006333;chromatin assembly or disassembly;4.06696500642531e-09!GO:0006461;protein complex assembly;4.2557744699051e-09!GO:0065002;intracellular protein transport across a membrane;5.52433089329057e-09!GO:0006399;tRNA metabolic process;5.84553008790992e-09!GO:0006732;coenzyme metabolic process;7.12944990642324e-09!GO:0043566;structure-specific DNA binding;9.64665455747966e-09!GO:0003697;single-stranded DNA binding;1.00549057845557e-08!GO:0009259;ribonucleotide metabolic process;1.29128751617862e-08!GO:0046930;pore complex;1.75180069849863e-08!GO:0012501;programmed cell death;1.86646327559332e-08!GO:0065004;protein-DNA complex assembly;2.03593988651705e-08!GO:0005793;ER-Golgi intermediate compartment;2.08775127733042e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.41476728556951e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.5027578590063e-08!GO:0006915;apoptosis;3.37925145196191e-08!GO:0003924;GTPase activity;3.63506603773498e-08!GO:0016881;acid-amino acid ligase activity;4.24301408971139e-08!GO:0051028;mRNA transport;5.11252129313459e-08!GO:0006163;purine nucleotide metabolic process;6.2667885451531e-08!GO:0000775;chromosome, pericentric region;6.2667885451531e-08!GO:0009150;purine ribonucleotide metabolic process;6.91575744270523e-08!GO:0006364;rRNA processing;8.37106210353641e-08!GO:0005813;centrosome;8.64036927960451e-08!GO:0015986;ATP synthesis coupled proton transport;9.7401570678404e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.7401570678404e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.09843984057297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.10217550585804e-07!GO:0005815;microtubule organizing center;1.10217550585804e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.15267906793115e-07!GO:0000245;spliceosome assembly;1.46677542056243e-07!GO:0048523;negative regulation of cellular process;1.47327718194795e-07!GO:0050794;regulation of cellular process;1.51652974818264e-07!GO:0016072;rRNA metabolic process;1.56872491499091e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.58472774654941e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.58472774654941e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.58472774654941e-07!GO:0009260;ribonucleotide biosynthetic process;1.64205766913745e-07!GO:0009055;electron carrier activity;2.09748034739667e-07!GO:0030120;vesicle coat;2.1088932895409e-07!GO:0030662;coated vesicle membrane;2.1088932895409e-07!GO:0006164;purine nucleotide biosynthetic process;2.27598130135791e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.42587427000149e-07!GO:0043038;amino acid activation;2.63929113688793e-07!GO:0006418;tRNA aminoacylation for protein translation;2.63929113688793e-07!GO:0043039;tRNA aminoacylation;2.63929113688793e-07!GO:0008219;cell death;2.63929113688793e-07!GO:0016265;death;2.63929113688793e-07!GO:0019829;cation-transporting ATPase activity;2.67489162622679e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.80360381661707e-07!GO:0048475;coated membrane;3.2300505701042e-07!GO:0030117;membrane coat;3.2300505701042e-07!GO:0044431;Golgi apparatus part;3.69982038787964e-07!GO:0009141;nucleoside triphosphate metabolic process;3.72944037475554e-07!GO:0005667;transcription factor complex;3.80868810757832e-07!GO:0007051;spindle organization and biogenesis;3.87583812678588e-07!GO:0009060;aerobic respiration;3.88076458363509e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.95559351179019e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.35472092592075e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.35472092592075e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.53123174563214e-07!GO:0007010;cytoskeleton organization and biogenesis;4.88647207811685e-07!GO:0005874;microtubule;5.08208698139667e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.3221487019262e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.3221487019262e-07!GO:0032446;protein modification by small protein conjugation;5.84862473585936e-07!GO:0006261;DNA-dependent DNA replication;5.84862473585936e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.41236041492059e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.41236041492059e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.29050553935592e-07!GO:0017038;protein import;9.42124210889394e-07!GO:0005768;endosome;9.78338317733894e-07!GO:0046034;ATP metabolic process;9.80611971633771e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.03885088239435e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.10804545394955e-06!GO:0016779;nucleotidyltransferase activity;1.12338603235689e-06!GO:0045333;cellular respiration;1.27751970451681e-06!GO:0016563;transcription activator activity;1.3440189531226e-06!GO:0006754;ATP biosynthetic process;1.46346998968731e-06!GO:0006753;nucleoside phosphate metabolic process;1.46346998968731e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.54876844393013e-06!GO:0016567;protein ubiquitination;1.60142067689452e-06!GO:0000151;ubiquitin ligase complex;1.97165737951204e-06!GO:0051188;cofactor biosynthetic process;2.26719128756428e-06!GO:0006099;tricarboxylic acid cycle;2.2697374822517e-06!GO:0046356;acetyl-CoA catabolic process;2.2697374822517e-06!GO:0016740;transferase activity;2.5029178826189e-06!GO:0004298;threonine endopeptidase activity;2.52376827613705e-06!GO:0048519;negative regulation of biological process;3.03463998825532e-06!GO:0051246;regulation of protein metabolic process;3.11506133186882e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.20578493307106e-06!GO:0007005;mitochondrion organization and biogenesis;3.23180892938771e-06!GO:0005525;GTP binding;3.3458188981106e-06!GO:0031252;leading edge;3.4277908219951e-06!GO:0016787;hydrolase activity;3.4277908219951e-06!GO:0009056;catabolic process;4.45264798183608e-06!GO:0005788;endoplasmic reticulum lumen;5.13685350279494e-06!GO:0006793;phosphorus metabolic process;5.38007666304589e-06!GO:0006796;phosphate metabolic process;5.38007666304589e-06!GO:0045259;proton-transporting ATP synthase complex;6.48173488258974e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.51676907090045e-06!GO:0003724;RNA helicase activity;6.94007006023395e-06!GO:0006084;acetyl-CoA metabolic process;7.17761893007333e-06!GO:0031988;membrane-bound vesicle;7.215097118454e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.34886014025873e-06!GO:0003713;transcription coactivator activity;8.34886014025873e-06!GO:0031497;chromatin assembly;1.1029331090335e-05!GO:0006334;nucleosome assembly;1.14806731187489e-05!GO:0031324;negative regulation of cellular metabolic process;1.15391147026453e-05!GO:0003714;transcription corepressor activity;1.21696580034071e-05!GO:0051187;cofactor catabolic process;1.22036679796382e-05!GO:0005798;Golgi-associated vesicle;1.22748517534491e-05!GO:0006613;cotranslational protein targeting to membrane;1.26290816273155e-05!GO:0009117;nucleotide metabolic process;1.27689182004883e-05!GO:0031982;vesicle;1.42028449984528e-05!GO:0005657;replication fork;1.42028449984528e-05!GO:0003682;chromatin binding;1.4358537725455e-05!GO:0043623;cellular protein complex assembly;1.61599373952992e-05!GO:0031410;cytoplasmic vesicle;2.07430011857301e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.33487781077309e-05!GO:0051329;interphase of mitotic cell cycle;2.37444745423481e-05!GO:0016310;phosphorylation;2.37444745423481e-05!GO:0007017;microtubule-based process;2.71308782380264e-05!GO:0051168;nuclear export;2.76264812367573e-05!GO:0009109;coenzyme catabolic process;2.91317908194464e-05!GO:0050789;regulation of biological process;3.00999136130694e-05!GO:0016564;transcription repressor activity;3.1952068899769e-05!GO:0009108;coenzyme biosynthetic process;3.99958516249104e-05!GO:0000139;Golgi membrane;4.02182455029853e-05!GO:0030867;rough endoplasmic reticulum membrane;4.13230254623186e-05!GO:0006752;group transfer coenzyme metabolic process;4.19519707646979e-05!GO:0051325;interphase;4.76023699484533e-05!GO:0043021;ribonucleoprotein binding;4.99155398113463e-05!GO:0043067;regulation of programmed cell death;5.13775457841565e-05!GO:0009892;negative regulation of metabolic process;5.35892010013688e-05!GO:0008654;phospholipid biosynthetic process;5.51811729766531e-05!GO:0042981;regulation of apoptosis;5.55026557013408e-05!GO:0032561;guanyl ribonucleotide binding;5.7275073059516e-05!GO:0019001;guanyl nucleotide binding;5.7275073059516e-05!GO:0003684;damaged DNA binding;5.77338347059118e-05!GO:0003729;mRNA binding;6.92123210957195e-05!GO:0051170;nuclear import;7.02758440969296e-05!GO:0000776;kinetochore;7.85233272793835e-05!GO:0006606;protein import into nucleus;9.06840085595054e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.29445297324649e-05!GO:0005762;mitochondrial large ribosomal subunit;9.35214030512335e-05!GO:0000315;organellar large ribosomal subunit;9.35214030512335e-05!GO:0008094;DNA-dependent ATPase activity;9.6383317848804e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.87213914316556e-05!GO:0043069;negative regulation of programmed cell death;0.000100457099188759!GO:0051427;hormone receptor binding;0.000101502528948871!GO:0016363;nuclear matrix;0.000102404699324165!GO:0003690;double-stranded DNA binding;0.000102654440210862!GO:0006302;double-strand break repair;0.000105155339580016!GO:0044440;endosomal part;0.000106649263207141!GO:0010008;endosome membrane;0.000106649263207141!GO:0016481;negative regulation of transcription;0.000142457568426883!GO:0005773;vacuole;0.000142822828365823!GO:0015980;energy derivation by oxidation of organic compounds;0.000154385616123333!GO:0008186;RNA-dependent ATPase activity;0.000163437478647029!GO:0008092;cytoskeletal protein binding;0.000170726031157374!GO:0051052;regulation of DNA metabolic process;0.000179654146072523!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000190516434405677!GO:0019899;enzyme binding;0.000200055770037573!GO:0043066;negative regulation of apoptosis;0.000207897893982147!GO:0005905;coated pit;0.000210427889321692!GO:0033116;ER-Golgi intermediate compartment membrane;0.000213248198953232!GO:0000075;cell cycle checkpoint;0.000215313559993311!GO:0035257;nuclear hormone receptor binding;0.000219493287626157!GO:0005769;early endosome;0.000223669668405577!GO:0007059;chromosome segregation;0.000225303702915901!GO:0003899;DNA-directed RNA polymerase activity;0.000233438483743894!GO:0006414;translational elongation;0.000233438483743894!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000296440375328068!GO:0006612;protein targeting to membrane;0.000318884039514292!GO:0000314;organellar small ribosomal subunit;0.000327217874338655!GO:0005763;mitochondrial small ribosomal subunit;0.000327217874338655!GO:0005770;late endosome;0.00032845694182005!GO:0045786;negative regulation of progression through cell cycle;0.000368703858332035!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000398106248584978!GO:0004674;protein serine/threonine kinase activity;0.00043310692808477!GO:0004004;ATP-dependent RNA helicase activity;0.000465181676705246!GO:0007052;mitotic spindle organization and biogenesis;0.000490931981863204!GO:0005885;Arp2/3 protein complex;0.000500000748483942!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000545335722285677!GO:0015399;primary active transmembrane transporter activity;0.000545335722285677!GO:0006916;anti-apoptosis;0.000545335722285677!GO:0046474;glycerophospholipid biosynthetic process;0.000559676491025665!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000591414902565024!GO:0016197;endosome transport;0.000618373469369618!GO:0005876;spindle microtubule;0.000670069154985634!GO:0005856;cytoskeleton;0.000712447464734695!GO:0016044;membrane organization and biogenesis;0.000727342626554657!GO:0016859;cis-trans isomerase activity;0.000741911638435136!GO:0005048;signal sequence binding;0.000742246043958367!GO:0006310;DNA recombination;0.000757718129889888!GO:0019222;regulation of metabolic process;0.000762448480211898!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000763816974515783!GO:0008022;protein C-terminus binding;0.000788583925871936!GO:0008250;oligosaccharyl transferase complex;0.000805978383122241!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000806891594955545!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000812525817319189!GO:0003678;DNA helicase activity;0.000831545856452844!GO:0051789;response to protein stimulus;0.000884440573197406!GO:0006986;response to unfolded protein;0.000884440573197406!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000907085155502518!GO:0019843;rRNA binding;0.000914040725199517!GO:0046489;phosphoinositide biosynthetic process;0.00100045088629179!GO:0005791;rough endoplasmic reticulum;0.00102163947838603!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00106174982821243!GO:0006650;glycerophospholipid metabolic process;0.00113740769454295!GO:0006383;transcription from RNA polymerase III promoter;0.00118812143215244!GO:0006891;intra-Golgi vesicle-mediated transport;0.00122994583735011!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00123135834077636!GO:0000323;lytic vacuole;0.00126087058944991!GO:0005764;lysosome;0.00126087058944991!GO:0030663;COPI coated vesicle membrane;0.00132225737031171!GO:0030126;COPI vesicle coat;0.00132225737031171!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00134119263246645!GO:0004576;oligosaccharyl transferase activity;0.00141956830070516!GO:0007264;small GTPase mediated signal transduction;0.00146160746326633!GO:0006338;chromatin remodeling;0.001494633758218!GO:0015631;tubulin binding;0.001494633758218!GO:0043284;biopolymer biosynthetic process;0.00153334108954115!GO:0048471;perinuclear region of cytoplasm;0.00153662510534791!GO:0045454;cell redox homeostasis;0.00165265309905471!GO:0031968;organelle outer membrane;0.00169411875392271!GO:0019867;outer membrane;0.00175283665828553!GO:0006402;mRNA catabolic process;0.00190606200566154!GO:0030134;ER to Golgi transport vesicle;0.00192190930600408!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00197949997668897!GO:0000792;heterochromatin;0.00207508515435507!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00214829520722865!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00214829520722865!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00214829520722865!GO:0005637;nuclear inner membrane;0.00234653538033409!GO:0030384;phosphoinositide metabolic process;0.00234653538033409!GO:0048500;signal recognition particle;0.00235808782526582!GO:0030137;COPI-coated vesicle;0.00250018265618592!GO:0030658;transport vesicle membrane;0.00251550151873511!GO:0032508;DNA duplex unwinding;0.00254435517796322!GO:0032392;DNA geometric change;0.00254435517796322!GO:0030176;integral to endoplasmic reticulum membrane;0.00255609811321093!GO:0008361;regulation of cell size;0.00255609811321093!GO:0000059;protein import into nucleus, docking;0.00259333595370191!GO:0030127;COPII vesicle coat;0.00259333595370191!GO:0012507;ER to Golgi transport vesicle membrane;0.00259333595370191!GO:0007006;mitochondrial membrane organization and biogenesis;0.00265589806516947!GO:0043681;protein import into mitochondrion;0.00281919714942211!GO:0009165;nucleotide biosynthetic process;0.00297664041849921!GO:0044452;nucleolar part;0.00299429637767802!GO:0046467;membrane lipid biosynthetic process;0.00308822615463521!GO:0006352;transcription initiation;0.00317801287825638!GO:0030132;clathrin coat of coated pit;0.00319419334072724!GO:0015992;proton transport;0.00319419334072724!GO:0006818;hydrogen transport;0.0032440896758669!GO:0006289;nucleotide-excision repair;0.00331084077426729!GO:0031072;heat shock protein binding;0.00336083929449135!GO:0001726;ruffle;0.0033934918274488!GO:0018196;peptidyl-asparagine modification;0.00345533157256776!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00345533157256776!GO:0048522;positive regulation of cellular process;0.003580342778027!GO:0007093;mitotic cell cycle checkpoint;0.00366171854479062!GO:0007243;protein kinase cascade;0.00396034528699535!GO:0008139;nuclear localization sequence binding;0.00396812486411053!GO:0016049;cell growth;0.00410467078244715!GO:0043492;ATPase activity, coupled to movement of substances;0.00410467078244715!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00410467078244715!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00427364318729985!GO:0031124;mRNA 3'-end processing;0.00432813569626753!GO:0008033;tRNA processing;0.00433315713555893!GO:0031901;early endosome membrane;0.00438112312934164!GO:0006401;RNA catabolic process;0.00453950796767007!GO:0007088;regulation of mitosis;0.00468244702535183!GO:0006839;mitochondrial transport;0.00489029004285625!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00493361520009141!GO:0006611;protein export from nucleus;0.00504246293471471!GO:0005684;U2-dependent spliceosome;0.00509176596510995!GO:0030036;actin cytoskeleton organization and biogenesis;0.00513110206268191!GO:0017166;vinculin binding;0.00528473666647996!GO:0048487;beta-tubulin binding;0.00532432657572473!GO:0006892;post-Golgi vesicle-mediated transport;0.00536182541103183!GO:0030660;Golgi-associated vesicle membrane;0.00537188587427021!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00552906700684926!GO:0016584;nucleosome positioning;0.00554396261639835!GO:0016853;isomerase activity;0.00584703466211991!GO:0006268;DNA unwinding during replication;0.00587814717901332!GO:0043624;cellular protein complex disassembly;0.00588325658773025!GO:0006405;RNA export from nucleus;0.0059865472868562!GO:0030521;androgen receptor signaling pathway;0.00599254748295459!GO:0030880;RNA polymerase complex;0.0060476192473901!GO:0006626;protein targeting to mitochondrion;0.00619523661611429!GO:0045045;secretory pathway;0.00632527697195152!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00639016906187839!GO:0045047;protein targeting to ER;0.00639016906187839!GO:0030133;transport vesicle;0.00646797881281304!GO:0030027;lamellipodium;0.00654464133591769!GO:0006284;base-excision repair;0.00666520905885446!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00688708673170128!GO:0005875;microtubule associated complex;0.00690645264538789!GO:0005869;dynactin complex;0.00691345173942844!GO:0003702;RNA polymerase II transcription factor activity;0.00708108140546263!GO:0005741;mitochondrial outer membrane;0.00734938698106742!GO:0000922;spindle pole;0.00747037717337393!GO:0003746;translation elongation factor activity;0.00747427675173859!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00775786669789026!GO:0051252;regulation of RNA metabolic process;0.0078487772966133!GO:0030118;clathrin coat;0.00807344541751857!GO:0005862;muscle thin filament tropomyosin;0.00813892626365236!GO:0051087;chaperone binding;0.00816210378935183!GO:0016272;prefoldin complex;0.00818939259916542!GO:0043596;nuclear replication fork;0.00825849218565661!GO:0004527;exonuclease activity;0.00843263903587272!GO:0003711;transcription elongation regulator activity;0.00859359306406548!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00859359306406548!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00859359306406548!GO:0035258;steroid hormone receptor binding;0.00859359306406548!GO:0000339;RNA cap binding;0.00910019188920904!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00921391660037076!GO:0045893;positive regulation of transcription, DNA-dependent;0.00923571010562329!GO:0016491;oxidoreductase activity;0.00929509352433928!GO:0001558;regulation of cell growth;0.00943691888883651!GO:0008312;7S RNA binding;0.0094420649103031!GO:0008180;signalosome;0.00969598216060828!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00991715247429216!GO:0016251;general RNA polymerase II transcription factor activity;0.0105218559030387!GO:0006497;protein amino acid lipidation;0.0106896215549016!GO:0032984;macromolecular complex disassembly;0.0110295145566253!GO:0042393;histone binding;0.0111086991452036!GO:0045892;negative regulation of transcription, DNA-dependent;0.0111376095086272!GO:0033673;negative regulation of kinase activity;0.011151527548184!GO:0006469;negative regulation of protein kinase activity;0.011151527548184!GO:0043022;ribosome binding;0.0111695250689054!GO:0051348;negative regulation of transferase activity;0.0113768169087514!GO:0008017;microtubule binding;0.0113775127671349!GO:0030032;lamellipodium biogenesis;0.0114862367933946!GO:0000910;cytokinesis;0.0115175834662884!GO:0008168;methyltransferase activity;0.0115546049203029!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0115856270138541!GO:0000428;DNA-directed RNA polymerase complex;0.0115856270138541!GO:0006091;generation of precursor metabolites and energy;0.0116290776324826!GO:0016741;transferase activity, transferring one-carbon groups;0.0119395593341761!GO:0045941;positive regulation of transcription;0.0121096262852695!GO:0065009;regulation of a molecular function;0.0123550041181338!GO:0005832;chaperonin-containing T-complex;0.0123724114185913!GO:0030029;actin filament-based process;0.0130297610400406!GO:0005096;GTPase activator activity;0.0134946756975021!GO:0016301;kinase activity;0.0137276155455321!GO:0006595;polyamine metabolic process;0.0137276155455321!GO:0006506;GPI anchor biosynthetic process;0.0137967124189617!GO:0007030;Golgi organization and biogenesis;0.0142470995549464!GO:0000152;nuclear ubiquitin ligase complex;0.0143200163130464!GO:0032200;telomere organization and biogenesis;0.014629930134476!GO:0000723;telomere maintenance;0.014629930134476!GO:0000209;protein polyubiquitination;0.0150107983984827!GO:0008234;cysteine-type peptidase activity;0.0152920207667837!GO:0006275;regulation of DNA replication;0.0155576814028265!GO:0000781;chromosome, telomeric region;0.0155576814028265!GO:0006376;mRNA splice site selection;0.0156447605640073!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0156447605640073!GO:0008047;enzyme activator activity;0.0157932126183014!GO:0008629;induction of apoptosis by intracellular signals;0.015960339583434!GO:0030119;AP-type membrane coat adaptor complex;0.0159965099753746!GO:0000228;nuclear chromosome;0.0159997840237751!GO:0008276;protein methyltransferase activity;0.0162341841969945!GO:0000786;nucleosome;0.0162515671411203!GO:0031123;RNA 3'-end processing;0.0166640563635743!GO:0006505;GPI anchor metabolic process;0.0167096461376475!GO:0042802;identical protein binding;0.0168281877843291!GO:0043241;protein complex disassembly;0.0174652270520926!GO:0007040;lysosome organization and biogenesis;0.0174664175514625!GO:0019783;small conjugating protein-specific protease activity;0.0180282102856277!GO:0006509;membrane protein ectodomain proteolysis;0.0191275555309028!GO:0033619;membrane protein proteolysis;0.0191275555309028!GO:0031625;ubiquitin protein ligase binding;0.0197987579725887!GO:0065007;biological regulation;0.020012495297!GO:0007265;Ras protein signal transduction;0.020012495297!GO:0008287;protein serine/threonine phosphatase complex;0.020257562583818!GO:0031529;ruffle organization and biogenesis;0.0203126946666214!GO:0000082;G1/S transition of mitotic cell cycle;0.0203551485103317!GO:0051287;NAD binding;0.0204382775938176!GO:0033559;unsaturated fatty acid metabolic process;0.0207059224562347!GO:0006636;unsaturated fatty acid biosynthetic process;0.0207059224562347!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0209655088681614!GO:0006897;endocytosis;0.0209655088681614!GO:0010324;membrane invagination;0.0209655088681614!GO:0043488;regulation of mRNA stability;0.0209655088681614!GO:0043487;regulation of RNA stability;0.0209655088681614!GO:0004843;ubiquitin-specific protease activity;0.0214612579355434!GO:0030131;clathrin adaptor complex;0.0219306188614489!GO:0030659;cytoplasmic vesicle membrane;0.0222855222716657!GO:0007021;tubulin folding;0.0227269589872867!GO:0016407;acetyltransferase activity;0.0228216247565275!GO:0006672;ceramide metabolic process;0.0228598148953457!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0232984740851949!GO:0031323;regulation of cellular metabolic process;0.0234587166752399!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0237803360581114!GO:0010257;NADH dehydrogenase complex assembly;0.0237803360581114!GO:0033108;mitochondrial respiratory chain complex assembly;0.0237803360581114!GO:0042770;DNA damage response, signal transduction;0.0238979047285395!GO:0006695;cholesterol biosynthetic process;0.0240576078129045!GO:0042158;lipoprotein biosynthetic process;0.0240706559888064!GO:0050681;androgen receptor binding;0.0240706559888064!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0245737678885366!GO:0016126;sterol biosynthetic process;0.0245737678885366!GO:0000049;tRNA binding;0.0247702778098725!GO:0006740;NADPH regeneration;0.0249247630970563!GO:0006098;pentose-phosphate shunt;0.0249247630970563!GO:0044430;cytoskeletal part;0.0255669973267961!GO:0043189;H4/H2A histone acetyltransferase complex;0.02564986743224!GO:0022890;inorganic cation transmembrane transporter activity;0.0269235210526655!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.027137234122382!GO:0015002;heme-copper terminal oxidase activity;0.027137234122382!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.027137234122382!GO:0004129;cytochrome-c oxidase activity;0.027137234122382!GO:0004003;ATP-dependent DNA helicase activity;0.0271403162348024!GO:0046483;heterocycle metabolic process;0.0277072782611675!GO:0000725;recombinational repair;0.0279140238314274!GO:0000724;double-strand break repair via homologous recombination;0.0279140238314274!GO:0008601;protein phosphatase type 2A regulator activity;0.0281213404087327!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0281213404087327!GO:0004221;ubiquitin thiolesterase activity;0.0281339736703878!GO:0008538;proteasome activator activity;0.0284157430204021!GO:0044433;cytoplasmic vesicle part;0.0285609938941634!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0294231062264325!GO:0047485;protein N-terminus binding;0.0294231062264325!GO:0030496;midbody;0.0297310141267876!GO:0051539;4 iron, 4 sulfur cluster binding;0.0299505529249105!GO:0051128;regulation of cellular component organization and biogenesis;0.0302048670870557!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0304600226609544!GO:0005938;cell cortex;0.0304600226609544!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0305336777109815!GO:0040029;regulation of gene expression, epigenetic;0.0306132563985261!GO:0016569;covalent chromatin modification;0.0310756160277443!GO:0051540;metal cluster binding;0.0311799238210187!GO:0051536;iron-sulfur cluster binding;0.0311799238210187!GO:0043601;nuclear replisome;0.0311999202641343!GO:0030894;replisome;0.0311999202641343!GO:0005784;translocon complex;0.0315345220900133!GO:0007004;telomere maintenance via telomerase;0.0318021075737015!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0322949545851416!GO:0009116;nucleoside metabolic process;0.0325507914917394!GO:0043130;ubiquitin binding;0.0325507914917394!GO:0032182;small conjugating protein binding;0.0325507914917394!GO:0046966;thyroid hormone receptor binding;0.0340306685849767!GO:0051101;regulation of DNA binding;0.0342497383873632!GO:0005669;transcription factor TFIID complex;0.0353524650651732!GO:0035267;NuA4 histone acetyltransferase complex;0.0365924699387566!GO:0016790;thiolester hydrolase activity;0.0368330438173736!GO:0046519;sphingoid metabolic process;0.0371886904846757!GO:0009112;nucleobase metabolic process;0.0372993632684003!GO:0000819;sister chromatid segregation;0.0374401664211737!GO:0007033;vacuole organization and biogenesis;0.0379310391911704!GO:0006378;mRNA polyadenylation;0.0380110133493747!GO:0008610;lipid biosynthetic process;0.0381905105845087!GO:0030518;steroid hormone receptor signaling pathway;0.0383524985438116!GO:0044262;cellular carbohydrate metabolic process;0.0394077848552322!GO:0006778;porphyrin metabolic process;0.0397303459746308!GO:0033013;tetrapyrrole metabolic process;0.0397303459746308!GO:0006270;DNA replication initiation;0.0400129894427131!GO:0031371;ubiquitin conjugating enzyme complex;0.0400227458663253!GO:0004518;nuclease activity;0.0400227458663253!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0400227458663253!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0400227458663253!GO:0012506;vesicle membrane;0.0400638210419469!GO:0016311;dephosphorylation;0.0400886514976347!GO:0044454;nuclear chromosome part;0.0406280840017164!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0407906007127345!GO:0031970;organelle envelope lumen;0.0415392183456047!GO:0006144;purine base metabolic process;0.0416521417087264!GO:0030125;clathrin vesicle coat;0.0427692410540926!GO:0030665;clathrin coated vesicle membrane;0.0427692410540926!GO:0006007;glucose catabolic process;0.0431024367324532!GO:0000070;mitotic sister chromatid segregation;0.0440497418199013!GO:0032259;methylation;0.0444992648963788!GO:0005680;anaphase-promoting complex;0.045404065420105!GO:0000018;regulation of DNA recombination;0.0454855897748376!GO:0030911;TPR domain binding;0.045953673886075!GO:0042026;protein refolding;0.0462631365876467!GO:0051920;peroxiredoxin activity;0.0466601379666637!GO:0008536;Ran GTPase binding;0.0466664543287732!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0479080654181171!GO:0016791;phosphoric monoester hydrolase activity;0.0484103237932997!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.048658283486706!GO:0030695;GTPase regulator activity;0.048658283486706!GO:0000123;histone acetyltransferase complex;0.0489023774522808!GO:0051098;regulation of binding;0.0489681764337095!GO:0031902;late endosome membrane;0.0492074567827672!GO:0002102;podosome;0.049700964381411 | |||
|sample_id=10444 | |||
|sample_note= | |||
|sample_sex=unknown | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=brain | |||
|top_motifs=HOXA9_MEIS1:2.0308510814;TFDP1:1.44560807399;ZNF384:1.36614042134;POU3F1..4:1.25559179789;GFI1:1.09541412181;EN1,2:1.07886127724;E2F1..5:0.967869148778;ADNP_IRX_SIX_ZHX:0.952054189441;PRRX1,2:0.931765634854;ZIC1..3:0.922927369268;PITX1..3:0.888587914613;XCPE1{core}:0.881394195531;NKX3-1:0.868990008005;TLX1..3_NFIC{dimer}:0.802716541321;NRF1:0.7910783973;ZNF143:0.768209080049;NR3C1:0.754449678431;FOXD3:0.751589364447;ARID5B:0.715545644575;NKX6-1,2:0.660975253586;TEAD1:0.65553060343;NFY{A,B,C}:0.650179334209;SOX2:0.609913936407;PDX1:0.609425933543;NKX2-3_NKX2-5:0.594701126518;STAT5{A,B}:0.593419573554;RXRA_VDR{dimer}:0.590701989259;ZNF238:0.568399161521;EGR1..3:0.564417093265;HBP1_HMGB_SSRP1_UBTF:0.549603889316;SOX17:0.542425314538;MZF1:0.541425590102;PAX8:0.535867777999;AIRE:0.531134701026;GTF2A1,2:0.519452463096;PAX4:0.511173887506;GTF2I:0.495718733122;ZNF148:0.489063498472;FOXP1:0.483187887044;ELK1,4_GABP{A,B1}:0.461008643907;RFX1:0.453804666063;NFE2:0.438699540418;ALX4:0.435261396517;TLX2:0.422536756978;FOXM1:0.411709208258;OCT4_SOX2{dimer}:0.409684461156;NFE2L2:0.405630186171;EBF1:0.396847707841;ONECUT1,2:0.396174585578;BACH2:0.38565888224;GFI1B:0.37001753252;EVI1:0.34819202133;TP53:0.343779734831;ZBTB6:0.333979081191;CUX2:0.332363152851;TFAP2{A,C}:0.331354913544;TAL1_TCF{3,4,12}:0.318217691099;MYBL2:0.316271498654;NR1H4:0.310933755309;PBX1:0.310745004025;TFAP2B:0.257119779175;POU2F1..3:0.246612876637;PATZ1:0.246514686035;HIC1:0.245112576757;FOS_FOS{B,L1}_JUN{B,D}:0.228858462175;HOX{A5,B5}:0.21348235133;HSF1,2:0.206959074936;LEF1_TCF7_TCF7L1,2:0.199174380805;SP1:0.192825354775;CRX:0.185901023484;RREB1:0.181220641838;NANOG:0.180211535044;STAT1,3:0.175744416685;KLF4:0.164338893035;CDC5L:0.148642986637;PRDM1:0.140617159071;PAX5:0.130611199099;NFIX:0.125199881823;IKZF1:0.120197503694;HOX{A6,A7,B6,B7}:0.11363439129;RBPJ:0.1093573636;bHLH_family:0.108706916478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.103776825436;TEF:0.1000939963;POU5F1:0.085957420229;LHX3,4:0.0812181152581;MYB:0.0728936171304;FOXQ1:0.0677384756117;FOSL2:0.0644909283157;EP300:0.0635807305397;FOX{I1,J2}:0.0556109948412;TBX4,5:0.0496294956253;GCM1,2:0.0252935781697;YY1:0.00785358288823;GATA4:-0.0144103114764;MEF2{A,B,C,D}:-0.0150541943603;MAZ:-0.0153335901001;CDX1,2,4:-0.0170800475802;ZFP161:-0.0191598101563;FOX{F1,F2,J1}:-0.033116065773;RXR{A,B,G}:-0.0635582853244;MTE{core}:-0.0734782786996;FOXA2:-0.0847933466878;POU1F1:-0.0961003282527;MYOD1:-0.0967704082586;NKX3-2:-0.112012812012;HNF1A:-0.118257621388;BREu{core}:-0.125436066833;PAX1,9:-0.131211589904;IRF1,2:-0.132238232741;PPARG:-0.132910553981;ELF1,2,4:-0.133399763355;IRF7:-0.140218263089;IKZF2:-0.142101911517;MED-1{core}:-0.157008827783;STAT2,4,6:-0.158073854574;NFATC1..3:-0.15962008775;DBP:-0.180337332654;SMAD1..7,9:-0.182834495893;RUNX1..3:-0.192969036119;TOPORS:-0.192987222319;NR6A1:-0.193243903967;TFCP2:-0.196320218433;DMAP1_NCOR{1,2}_SMARC:-0.20864539805;SREBF1,2:-0.213257344232;HLF:-0.216669229126;SOX{8,9,10}:-0.228112327822;ZBTB16:-0.232189307755;MYFfamily:-0.246464780575;GATA6:-0.247218309394;HOX{A4,D4}:-0.251881268046;HNF4A_NR2F1,2:-0.261781049149;PAX3,7:-0.263409909553;UFEwm:-0.265190863809;RORA:-0.271571748854;SRF:-0.277683006477;NFKB1_REL_RELA:-0.278765054559;ATF2:-0.281229261349;LMO2:-0.292335370856;ETS1,2:-0.299320028685;RFX2..5_RFXANK_RFXAP:-0.303726459801;PAX6:-0.31372852823;XBP1:-0.327174131894;FOXO1,3,4:-0.349288712364;FOXN1:-0.358508783565;SNAI1..3:-0.387231895152;REST:-0.40319522783;CEBPA,B_DDIT3:-0.405816071365;CREB1:-0.413296228401;GZF1:-0.419899109939;SPIB:-0.422731285586;VSX1,2:-0.42318298893;HMGA1,2:-0.45578221579;JUN:-0.464680084453;FOXP3:-0.492596705842;TGIF1:-0.496466722919;ATF5_CREB3:-0.504491830844;ALX1:-0.52129987078;TFAP4:-0.52503641612;SPI1:-0.529304045129;NR5A1,2:-0.586895590424;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.595174465073;ESRRA:-0.596713503804;NKX2-2,8:-0.59766547025;ATF4:-0.603733081887;SOX5:-0.6154507639;NFIL3:-0.616672524116;POU6F1:-0.621474689629;FOX{D1,D2}:-0.624958182379;NFE2L1:-0.658373806944;HAND1,2:-0.660697170104;BPTF:-0.666705976034;FOXL1:-0.706653019182;T:-0.712345062373;SPZ1:-0.715503908595;AHR_ARNT_ARNT2:-0.74944265521;ZNF423:-0.749966252093;HES1:-0.758936245558;NHLH1,2:-0.759679488131;NKX2-1,4:-0.787933336538;PAX2:-0.796134735369;HMX1:-0.842171053837;ZEB1:-0.920020065438;MAFB:-0.949567198456;GLI1..3:-0.973031800126;NANOG{mouse}:-0.974287181741;ATF6:-1.00971840022;MTF1:-1.01441224337;TBP:-1.02453780208;AR:-1.17451334092;ESR1:-1.23409759281;HIF1A:-1.44653644786HOXA9_MEIS1:1.56891988048;ZNF384:1.50429374809;TFDP1:1.48315412703;POU3F1..4:1.28353871852;FOXD3:1.15739213951;GFI1:1.09682925119;ZIC1..3:1.00548160803;PRRX1,2:0.987949829276;XCPE1{core}:0.946020048246;ADNP_IRX_SIX_ZHX:0.916756218003;E2F1..5:0.912049446247;NKX2-3_NKX2-5:0.897542744393;NKX6-1,2:0.869410711027;NR3C1:0.861893142482;ZNF143:0.838769432062;EN1,2:0.833327232514;NRF1:0.817646622573;PITX1..3:0.80014656972;EVI1:0.782884243858;TLX1..3_NFIC{dimer}:0.760301678428;PAX4:0.727914137584;ARID5B:0.726601756758;STAT5{A,B}:0.724040308376;NFY{A,B,C}:0.708599381552;NKX3-1:0.704302365479;TEAD1:0.682307687602;FOXM1:0.668689159644;HBP1_HMGB_SSRP1_UBTF:0.650089253339;OCT4_SOX2{dimer}:0.554838880731;EGR1..3:0.543722264576;ALX4:0.54301582737;SOX2:0.537297085458;SOX17:0.529742096863;ELK1,4_GABP{A,B1}:0.524237296128;AIRE:0.4922945392;MZF1:0.467499332397;RFX1:0.464430303252;ZNF148:0.456877837395;GTF2I:0.439649537783;GTF2A1,2:0.433937649855;TLX2:0.430857691968;HOX{A6,A7,B6,B7}:0.423264982165;GFI1B:0.409704372625;PDX1:0.403395697911;ONECUT1,2:0.403311650471;MYBL2:0.40138079277;TEF:0.395779604734;TFAP2{A,C}:0.395212660146;TAL1_TCF{3,4,12}:0.392795959431;ZNF238:0.387396615103;NFE2:0.375837715522;HOX{A5,B5}:0.365501924496;NFIX:0.364927391797;BACH2:0.353355051367;NFE2L2:0.347210665671;FOXQ1:0.346445790501;PBX1:0.343020842105;IKZF2:0.334434171323;LHX3,4:0.300315595916;KLF4:0.294401232163;SP1:0.29234147276;GATA4:0.29126086062;EBF1:0.289518596668;TP53:0.284037939544;RBPJ:0.279940551118;HIC1:0.26694633634;RXRA_VDR{dimer}:0.256985529281;TFAP2B:0.252086297802;HSF1,2:0.241762064107;CDX1,2,4:0.224294686574;PRDM1:0.223697517975;CUX2:0.220153261232;PAX8:0.215699228713;STAT1,3:0.208315610608;FOS_FOS{B,L1}_JUN{B,D}:0.199582572243;LEF1_TCF7_TCF7L1,2:0.173709422215;FOX{F1,F2,J1}:0.172074405678;PATZ1:0.171400607961;CRX:0.156051289983;POU2F1..3:0.135119918285;ZBTB6:0.126281320493;RREB1:0.115636995867;FOXP1:0.107248936749;ZFP161:0.0962191048444;NR1H4:0.0898864719947;DBP:0.076687927317;HMGA1,2:0.0702330893517;POU5F1:0.0700515352699;PPARG:0.0644075938692;GCM1,2:0.054776104111;FOX{I1,J2}:0.0529976597621;MEF2{A,B,C,D}:0.0324850790642;MYB:0.0279756868478;FOXA2:0.0226085639019;NANOG:0.0210490830619;bHLH_family:0.0169237731466;PAX5:0.0165510444121;ZBTB16:0.00969705596414;FOSL2:0.000419134560721;CDC5L:-0.003791170842;PAX6:-0.016037677669;MAZ:-0.0291300535691;PAX3,7:-0.036916662813;IRF7:-0.0547088789851;POU1F1:-0.0573929669937;HNF1A:-0.0612811437156;MED-1{core}:-0.0621975045573;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0654864281347;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0744799394941;MTE{core}:-0.0835281754505;YY1:-0.096011907499;IRF1,2:-0.0965854553695;NFATC1..3:-0.131682678989;RXR{A,B,G}:-0.140749958487;BREu{core}:-0.169341066623;RUNX1..3:-0.174194242764;EP300:-0.179671100097;DMAP1_NCOR{1,2}_SMARC:-0.179753538878;ELF1,2,4:-0.182568858764;PAX1,9:-0.187757660664;STAT2,4,6:-0.204777133229;NKX3-2:-0.210036102811;FOXO1,3,4:-0.217311066637;HOX{A4,D4}:-0.217843938571;BPTF:-0.218574937013;TFCP2:-0.223777731752;FOXN1:-0.224914110654;HNF4A_NR2F1,2:-0.226866237077;SMAD1..7,9:-0.228302755109;UFEwm:-0.242797136038;IKZF1:-0.243773743414;SOX{8,9,10}:-0.247985797887;HLF:-0.251087879993;GATA6:-0.252600918913;SRF:-0.267698329311;MYFfamily:-0.278950239244;LMO2:-0.28492400918;MYOD1:-0.295078764939;SREBF1,2:-0.295376442915;NFKB1_REL_RELA:-0.298840253187;VSX1,2:-0.319010117347;TBX4,5:-0.3195608387;POU6F1:-0.323295326704;RORA:-0.326324102292;T:-0.337013705788;ETS1,2:-0.341808504568;NR6A1:-0.346700623035;XBP1:-0.347971395184;SNAI1..3:-0.381954753957;CEBPA,B_DDIT3:-0.384772828434;SOX5:-0.386033407687;ATF2:-0.417313391185;TGIF1:-0.43231836085;SPIB:-0.435029987979;FOXP3:-0.445680947049;REST:-0.450385534166;FOXL1:-0.463835183603;SPI1:-0.491033514912;ATF4:-0.491639242431;GZF1:-0.504421677372;ATF5_CREB3:-0.512056098113;TOPORS:-0.523925803734;JUN:-0.539785820423;TFAP4:-0.546592761034;RFX2..5_RFXANK_RFXAP:-0.563323257556;NKX2-1,4:-0.584514308746;NFIL3:-0.587545586975;CREB1:-0.598143438596;ESRRA:-0.646185228617;ZNF423:-0.68744848675;ALX1:-0.699007194503;SPZ1:-0.699294522183;GLI1..3:-0.710422105591;PAX2:-0.713463081882;HAND1,2:-0.714351002054;NR5A1,2:-0.718276199324;NFE2L1:-0.726355184719;NHLH1,2:-0.740298406838;FOX{D1,D2}:-0.806806231106;AHR_ARNT_ARNT2:-0.807773028169;HES1:-0.843751799549;MTF1:-0.857129175993;NKX2-2,8:-0.871206911279;HMX1:-0.871478569741;ZEB1:-0.890338797116;ATF6:-1.00401389868;MAFB:-1.06034076665;TBP:-1.07851206176;AR:-1.09445392476;NANOG{mouse}:-1.10226740796;ESR1:-1.20572312277;HIF1A:-1.34887487836 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10444-106F3;search_select_hide=table117:FF:10444-106F3 | |||
}} | }} |
Latest revision as of 14:02, 3 June 2020
Name: | glioblastoma cell line:A172 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11248,CNhs11185 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
library id: CNhs11185
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.611 |
10 | 10 | 0.277 |
100 | 100 | 0.944 |
101 | 101 | 0.422 |
102 | 102 | 0.484 |
103 | 103 | 0.624 |
104 | 104 | 0.624 |
105 | 105 | 0.771 |
106 | 106 | 3.11104e-4 |
107 | 107 | 0.38 |
108 | 108 | 0.561 |
109 | 109 | 0.378 |
11 | 11 | 0.321 |
110 | 110 | 0.698 |
111 | 111 | 0.374 |
112 | 112 | 0.0136 |
113 | 113 | 0.207 |
114 | 114 | 0.209 |
115 | 115 | 0.35 |
116 | 116 | 0.952 |
117 | 117 | 0.929 |
118 | 118 | 0.963 |
119 | 119 | 0.819 |
12 | 12 | 0.274 |
120 | 120 | 0.693 |
121 | 121 | 0.763 |
122 | 122 | 0.809 |
123 | 123 | 0.31 |
124 | 124 | 0.214 |
125 | 125 | 0.96 |
126 | 126 | 0.11 |
127 | 127 | 0.528 |
128 | 128 | 0.00968 |
129 | 129 | 0.434 |
13 | 13 | 0.0968 |
130 | 130 | 0.0775 |
131 | 131 | 0.229 |
132 | 132 | 0.632 |
133 | 133 | 0.402 |
134 | 134 | 0.478 |
135 | 135 | 0.0744 |
136 | 136 | 0.117 |
137 | 137 | 0.0176 |
138 | 138 | 0.211 |
139 | 139 | 0.00206 |
14 | 14 | 0.852 |
140 | 140 | 0.707 |
141 | 141 | 0.549 |
142 | 142 | 0.0452 |
143 | 143 | 0.445 |
144 | 144 | 0.622 |
145 | 145 | 0.624 |
146 | 146 | 0.671 |
147 | 147 | 0.46 |
148 | 148 | 0.204 |
149 | 149 | 0.257 |
15 | 15 | 0.67 |
150 | 150 | 0.834 |
151 | 151 | 0.534 |
152 | 152 | 0.33 |
153 | 153 | 0.166 |
154 | 154 | 0.456 |
155 | 155 | 0.262 |
156 | 156 | 0.707 |
157 | 157 | 0.757 |
158 | 158 | 0.685 |
159 | 159 | 0.651 |
16 | 16 | 0.172 |
160 | 160 | 0.349 |
161 | 161 | 0.589 |
162 | 162 | 0.892 |
163 | 163 | 0.108 |
164 | 164 | 0.271 |
165 | 165 | 0.55 |
166 | 166 | 0.604 |
167 | 167 | 0.252 |
168 | 168 | 0.552 |
169 | 169 | 0.43 |
17 | 17 | 0.541 |
18 | 18 | 0.353 |
19 | 19 | 0.373 |
2 | 2 | 0.61 |
20 | 20 | 0.827 |
21 | 21 | 0.599 |
22 | 22 | 0.733 |
23 | 23 | 0.37 |
24 | 24 | 0.633 |
25 | 25 | 0.26 |
26 | 26 | 0.442 |
27 | 27 | 0.132 |
28 | 28 | 0.326 |
29 | 29 | 0.331 |
3 | 3 | 0.371 |
30 | 30 | 0.66 |
31 | 31 | 0.962 |
32 | 32 | 0.00542 |
33 | 33 | 0.448 |
34 | 34 | 0.328 |
35 | 35 | 0.116 |
36 | 36 | 0.0219 |
37 | 37 | 0.517 |
38 | 38 | 0.593 |
39 | 39 | 0.235 |
4 | 4 | 0.832 |
40 | 40 | 0.128 |
41 | 41 | 0.424 |
42 | 42 | 0.925 |
43 | 43 | 0.109 |
44 | 44 | 0.189 |
45 | 45 | 0.911 |
46 | 46 | 0.239 |
47 | 47 | 0.837 |
48 | 48 | 0.735 |
49 | 49 | 0.0642 |
5 | 5 | 0.0718 |
50 | 50 | 0.936 |
51 | 51 | 0.671 |
52 | 52 | 0.107 |
53 | 53 | 0.873 |
54 | 54 | 0.958 |
55 | 55 | 0.798 |
56 | 56 | 0.545 |
57 | 57 | 0.622 |
58 | 58 | 0.0507 |
59 | 59 | 0.16 |
6 | 6 | 0.229 |
60 | 60 | 0.00448 |
61 | 61 | 0.806 |
62 | 62 | 0.0944 |
63 | 63 | 0.229 |
64 | 64 | 0.374 |
65 | 65 | 0.0847 |
66 | 66 | 6.33585e-4 |
67 | 67 | 0.807 |
68 | 68 | 0.741 |
69 | 69 | 0.459 |
7 | 7 | 0.0322 |
70 | 70 | 0.00331 |
71 | 71 | 0.476 |
72 | 72 | 0.26 |
73 | 73 | 0.314 |
74 | 74 | 0.888 |
75 | 75 | 0.219 |
76 | 76 | 0.0569 |
77 | 77 | 0.345 |
78 | 78 | 0.466 |
79 | 79 | 0.0943 |
8 | 8 | 0.799 |
80 | 80 | 0.773 |
81 | 81 | 0.483 |
82 | 82 | 0.381 |
83 | 83 | 0.851 |
84 | 84 | 0.701 |
85 | 85 | 0.00462 |
86 | 86 | 0.419 |
87 | 87 | 0.711 |
88 | 88 | 0.555 |
89 | 89 | 0.0335 |
9 | 9 | 0.114 |
90 | 90 | 0.761 |
91 | 91 | 0.0888 |
92 | 92 | 0.178 |
93 | 93 | 0.754 |
94 | 94 | 0.364 |
95 | 95 | 0.0995 |
96 | 96 | 0.167 |
97 | 97 | 0.0954 |
98 | 98 | 0.00431 |
99 | 99 | 0.583 |
library id: CNhs11185
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.643 |
10 | 10 | 0.359 |
100 | 100 | 0.99 |
101 | 101 | 0.762 |
102 | 102 | 0.219 |
103 | 103 | 0.439 |
104 | 104 | 0.633 |
105 | 105 | 0.551 |
106 | 106 | 5.4886e-4 |
107 | 107 | 0.397 |
108 | 108 | 0.557 |
109 | 109 | 0.396 |
11 | 11 | 0.319 |
110 | 110 | 0.666 |
111 | 111 | 0.509 |
112 | 112 | 0.00791 |
113 | 113 | 0.23 |
114 | 114 | 0.301 |
115 | 115 | 0.396 |
116 | 116 | 0.831 |
117 | 117 | 0.963 |
118 | 118 | 0.657 |
119 | 119 | 0.934 |
12 | 12 | 0.379 |
120 | 120 | 0.578 |
121 | 121 | 0.844 |
122 | 122 | 0.785 |
123 | 123 | 0.862 |
124 | 124 | 0.273 |
125 | 125 | 0.736 |
126 | 126 | 0.0342 |
127 | 127 | 0.689 |
128 | 128 | 0.00681 |
129 | 129 | 0.408 |
13 | 13 | 0.0756 |
130 | 130 | 0.0755 |
131 | 131 | 0.0761 |
132 | 132 | 0.479 |
133 | 133 | 0.577 |
134 | 134 | 0.671 |
135 | 135 | 0.122 |
136 | 136 | 0.121 |
137 | 137 | 0.00945 |
138 | 138 | 0.275 |
139 | 139 | 0.00813 |
14 | 14 | 0.943 |
140 | 140 | 0.591 |
141 | 141 | 0.603 |
142 | 142 | 0.0192 |
143 | 143 | 0.329 |
144 | 144 | 0.984 |
145 | 145 | 0.76 |
146 | 146 | 0.753 |
147 | 147 | 0.449 |
148 | 148 | 0.42 |
149 | 149 | 0.37 |
15 | 15 | 0.744 |
150 | 150 | 0.893 |
151 | 151 | 0.629 |
152 | 152 | 0.256 |
153 | 153 | 0.34 |
154 | 154 | 0.585 |
155 | 155 | 0.372 |
156 | 156 | 0.891 |
157 | 157 | 0.885 |
158 | 158 | 0.469 |
159 | 159 | 0.793 |
16 | 16 | 0.284 |
160 | 160 | 0.324 |
161 | 161 | 0.654 |
162 | 162 | 0.866 |
163 | 163 | 0.337 |
164 | 164 | 0.148 |
165 | 165 | 0.556 |
166 | 166 | 0.751 |
167 | 167 | 0.235 |
168 | 168 | 0.751 |
169 | 169 | 0.477 |
17 | 17 | 0.489 |
18 | 18 | 0.481 |
19 | 19 | 0.456 |
2 | 2 | 0.749 |
20 | 20 | 0.946 |
21 | 21 | 0.733 |
22 | 22 | 0.824 |
23 | 23 | 0.355 |
24 | 24 | 0.523 |
25 | 25 | 0.244 |
26 | 26 | 0.396 |
27 | 27 | 0.234 |
28 | 28 | 0.262 |
29 | 29 | 0.21 |
3 | 3 | 0.626 |
30 | 30 | 0.657 |
31 | 31 | 0.904 |
32 | 32 | 0.00719 |
33 | 33 | 0.395 |
34 | 34 | 0.24 |
35 | 35 | 0.137 |
36 | 36 | 0.0152 |
37 | 37 | 0.504 |
38 | 38 | 0.843 |
39 | 39 | 0.186 |
4 | 4 | 0.847 |
40 | 40 | 0.0351 |
41 | 41 | 0.43 |
42 | 42 | 0.756 |
43 | 43 | 0.0766 |
44 | 44 | 0.0649 |
45 | 45 | 0.917 |
46 | 46 | 0.241 |
47 | 47 | 0.919 |
48 | 48 | 0.872 |
49 | 49 | 0.0676 |
5 | 5 | 0.0484 |
50 | 50 | 0.992 |
51 | 51 | 0.623 |
52 | 52 | 0.0769 |
53 | 53 | 0.43 |
54 | 54 | 0.798 |
55 | 55 | 0.786 |
56 | 56 | 0.223 |
57 | 57 | 0.476 |
58 | 58 | 0.0269 |
59 | 59 | 0.15 |
6 | 6 | 0.372 |
60 | 60 | 0.00246 |
61 | 61 | 0.969 |
62 | 62 | 0.0783 |
63 | 63 | 0.303 |
64 | 64 | 0.391 |
65 | 65 | 0.121 |
66 | 66 | 8.6527e-4 |
67 | 67 | 0.934 |
68 | 68 | 0.914 |
69 | 69 | 0.444 |
7 | 7 | 0.0407 |
70 | 70 | 0.0296 |
71 | 71 | 0.539 |
72 | 72 | 0.13 |
73 | 73 | 0.199 |
74 | 74 | 0.888 |
75 | 75 | 0.275 |
76 | 76 | 0.0324 |
77 | 77 | 0.656 |
78 | 78 | 0.515 |
79 | 79 | 0.164 |
8 | 8 | 0.748 |
80 | 80 | 0.915 |
81 | 81 | 0.522 |
82 | 82 | 0.527 |
83 | 83 | 0.875 |
84 | 84 | 0.838 |
85 | 85 | 0.00404 |
86 | 86 | 0.367 |
87 | 87 | 0.502 |
88 | 88 | 0.736 |
89 | 89 | 0.0855 |
9 | 9 | 0.0637 |
90 | 90 | 0.478 |
91 | 91 | 0.0965 |
92 | 92 | 0.271 |
93 | 93 | 0.555 |
94 | 94 | 0.173 |
95 | 95 | 0.124 |
96 | 96 | 0.118 |
97 | 97 | 0.143 |
98 | 98 | 0.0123 |
99 | 99 | 0.503 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11248
library id: CNhs11185
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100016 A-172 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101530 (glioblastoma cell line sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0100016 (A-172 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)