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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00004911
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|accession_numbers=CAGE;DRX007844;DRR008716;DRZ000141;DRZ001526;DRZ011491;DRZ012876
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:154,DOID:162,DOID:305,DOID:4,DOID:4236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1115,DOID:154,DOID:4236
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100400,FF:0101120,FF:0100197
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:81118647..81118666,+!p1@PRDM8!2.41!336.49!PRDM8;;chr2:182545234..182545252,-!p1@NEUROD1!1.99!96.54!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!1.90!77.61!INSM1;;chr11:31832658..31832681,-!p1@PAX6!1.88!75.01!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.79!119.11!DACH1;;chr1:3569072..3569093,+!p1@TP73!1.61!39.93!TP73;;chr1:2461692..2461710,-!p1@HES5!1.57!35.77!HES5;;chr1:197886461..197886558,+!p1@LHX9!1.53!32.99!LHX9;;chr8:80679993..80680011,-!p1@HEY1!1.51!44.45!HEY1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.43!HOXC5;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.74!PAX6;;chr2:162272785..162272836,+!p1@TBR1!1.43!25.70!TBR1;;chr7:27213893..27213954,-!p1@HOXA10!1.42!25.18!HOXA10;;chr7:27205136..27205164,-!p1@HOXA9!1.42!25.00!HOXA9;;chr4:81105027..81105039,+!p3@PRDM8!1.41!28.47!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!1.39!23.79!NEUROD2;;chr2:162272889..162272915,+!p2@TBR1!1.39!23.61!TBR1;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.09!DACH1;;chr11:31832807..31832823,-!p4@PAX6!1.38!22.92!PAX6;;chr9:16728047..16728061,-!p8@BNC2!1.37!22.40!BNC2;;chr9:126774018..126774055,+!p1@LHX2!1.35!21.18!LHX2;;chr11:31832610..31832639,-!p5@PAX6!1.34!21.01!PAX6;;chr11:31832687..31832704,-!p6@PAX6!1.32!19.79!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.28!46.36!ZFPM2;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.94!MXD3;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.89!EBF1;;chr1:23857325..23857416,-!p2@E2F2!1.25!19.45!E2F2;;chr12:55413751..55413765,+!p1@NEUROD4!1.23!15.97!NEUROD4;;chr11:31832581..31832601,-!p7@PAX6!1.22!15.63!PAX6;;chr17:53342311..53342400,+!p1@HLF!1.21!17.54!HLF;;chr17:46622440..46622477,-!p5@HOXB2!1.21!16.84!HOXB2;;chr6:19837592..19837621,+!p1@ID4!1.20!89.94!ID4;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.93!TBX1;;chr1:40105299..40105326,-!p1@HEYL!1.20!14.76!HEYL;;chr1:935398..935465,-!p2@HES4!1.19!29.86!HES4;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.41!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.06!HOXC9;;chr15:76629123..76629151,+!p1@ISL2!1.16!14.93!ISL2;;chr5:158527104..158527135,-!p4@EBF1!1.16!13.54!EBF1;;chr7:156803329..156803362,-!p1@MNX1!1.16!13.54!MNX1;;chr11:63684602..63684664,-!p1@RCOR2!1.15!25.87!RCOR2;;chr6:10412392..10412409,-!p4@TFAP2A!1.15!15.11!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.14!12.67!POU3F3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.14!12.67!ZBED1;;chr2:166326200..166326216,+!p1@CSRNP3!1.12!17.88!CSRNP3;;chr18:55102628..55102646,+!p2@ONECUT2!1.12!12.33!ONECUT2;;chr19:38720294..38720348,-!p1@DPF1!1.11!14.76!DPF1;;chr20:32274150..32274166,-!p2@E2F1!1.10!21.70!E2F1;;chr1:160336851..160336868,+!p1@NHLH1!1.08!10.94!NHLH1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.08!10.94!RUNX1T1;;chr2:100721881..100721904,-!p6@AFF3!1.07!10.76!AFF3;;chr12:24102576..24102623,-!p2@SOX5!1.07!10.76!SOX5;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.27!E2F2;;chr7:27224795..27224840,-!p2@HOXA11!1.05!10.24!HOXA11;;chr8:53166899..53166914,-!p3@ST18!1.04!9.90!ST18;;chr6:10412600..10412637,-!p1@TFAP2A!1.03!16.32!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!1.03!9.72!HOXA11;;chr13:79177703..79177729,-!p2@POU4F1!1.03!9.72!POU4F1;;chr9:96717629..96717644,-!p1@BARX1!1.03!9.72!BARX1;;chr5:158526459..158526481,-!p2@EBF1!1.02!12.67!EBF1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.38!LHX2;;chr19:50432453..50432468,+!p1@ATF5!1.01!527.82!ATF5;;chr8:106330696..106330719,+!p2@ZFPM2!1.01!11.98!ZFPM2;;chr4:81105091..81105107,+!p9@PRDM8!1.00!9.03!PRDM8;;chr2:239148671..239148686,-!p1@HES6!0.98!31.95!HES6;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.37!PITX1;;chr5:150284532..150284549,-!p1@ZNF300!0.97!17.54!ZNF300;;chr15:37390850..37390909,-!p3@MEIS2!0.97!16.67!MEIS2;;chr3:40547564..40547616,+!p1@ZNF620!0.97!11.81!ZNF620;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.33!RUNX1T1;;chr20:32274179..32274213,-!p1@E2F1!0.96!55.04!E2F1;;chr1:3569101..3569115,+!p2@TP73!0.96!8.16!TP73;;chr9:114287433..114287513,+!p1@ZNF483!0.95!21.01!ZNF483;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.99!RUNX1T1;;chr12:85673977..85674015,+!p1@ALX1!0.95!7.99!ALX1;;chr2:157189180..157189290,-!p1@NR4A2!0.94!42.02!NR4A2;;chr6:20402102..20402152,+!p1@E2F3!0.94!32.64!E2F3;;chr8:116681409..116681431,-!p2@TRPS1!0.93!21.01!TRPS1;;chr19:20188776..20188826,+!p1@ZNF90!0.93!20.66!ZNF90;;chr9:14313893..14313908,-!p7@NFIB!0.93!10.94!NFIB;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.38!BNC2;;chr9:16727978..16728010,-!p6@BNC2!0.93!7.47!BNC2;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.47!TBX15;;chr1:216896752..216896778,-!p1@ESRRG!0.92!7.29!ESRRG;;chr1:3569135..3569150,+!p3@TP73!0.92!7.29!TP73;;chr20:62795799..62795819,+!p1@MYT1!0.92!7.29!MYT1;;chr20:62795834..62795878,+!p2@MYT1!0.92!7.29!MYT1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.92!7.29!MEF2B;;chr14:38064429..38064486,-!p1@FOXA1!0.92!7.29!FOXA1;;chr9:16871214..16871260,-!p11@BNC2!0.92!7.29!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.91!7.12!NKX2-5;;chr2:177001290..177001315,+!p1@HOXD3!0.91!7.12!HOXD3;;chr2:182545296.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HOXD13;;chr2:176987441..176987454,+!p1@HOXD9!0.31!1.04!HOXD9;;chr2:177001268..177001287,+!p3@HOXD3!0.31!1.04!HOXD3;;chr2:182543992..182543996,-!p10@NEUROD1!0.31!1.04!NEUROD1;;chr2:45168959..45168990,+!p6@SIX3!0.31!1.04!SIX3;;chr2:45236829..45236840,-!p3@SIX2!0.31!1.04!SIX2;;chr2:60780730..60780742,-!p5@BCL11A!0.31!1.04!BCL11A;;chr3:21792790..21792824,-!p4@ZNF385D!0.31!1.04!ZNF385D;;chr4:106156800..106156812,+!p17@TET2!0.31!1.04!TET2;;chr19:31840278..31840300,-!p5@TSHZ3!0.31!1.04!TSHZ3;;chr10:124895520..124895540,+!p3@HMX3!0.31!1.04!HMX3;;chr10:131762558..131762569,-!p5@EBF3!0.31!1.04!EBF3;;chr11:31832207..31832226,-!p12@PAX6!0.31!1.04!PAX6;;chr12:54394059..54394088,+!p3@HOXC9!0.31!1.04!HOXC9;;chr12:54447686..54447704,+!p5@HOXC4!0.31!1.04!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!0.31!1.04!FOXG1;;chr14:38064572..38064584,-!p5@FOXA1!0.31!1.04!FOXA1;;chr14:58797974..58798011,+!p3@ARID4A!0.31!1.04!ARID4A;;chr19:38210552..38210570,-!p2@ZNF607!0.31!1.04!ZNF607;;chr19:38720356..38720369,-!p4@DPF1!0.31!1.04!DPF1;;chr19:47538560..47538591,+!p2@NPAS1!0.31!1.04!NPAS1;;chr19:58740449..58740456,+!p3@ZNF544!0.31!1.04!ZNF544;;chr1:25256439..25256476,-!p3@RUNX3!0.31!1.04!RUNX3;;chr5:124082548..124082571,-!p9@ZNF608!0.31!1.04!ZNF608;;chr5:133450458..133450469,+!p4@TCF7!0.31!1.04!TCF7;;chr6:15401104..15401166,+!p5@JARID2!0.31!1.04!JARID2;;chr7:27196217..27196246,-!p2@HOXA7!0.31!1.04!HOXA7;;chr7:27212374..27212387,-!p12@HOXA10!0.31!1.04!HOXA10;;chr7:27239740..27239759,-!p2@HOXA13!0.31!1.04!HOXA13;;chr8:93107855..93107901,-!p12@RUNX1T1!0.31!1.04!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.31!1.04!ZFP37;;chrX:24167818..24167825,+!p7@ZFX!0.31!1.04!ZFX;;chr9:126777688..126777700,+!p6@LHX2!0.31!1.04!LHX2;;chr1:35658736..35658754,-!p1@SFPQ!0.30!662.03!SFPQ;;chr11:118307179..118307223,+!p1@MLL!0.30!55.39!MLL;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.69!ZNF192;;chr12:95467359..95467417,-!p2@NR2C1!0.30!22.92!NR2C1;;chr4:95128999..95129056,+!p2@SMARCAD1!0.30!18.40!SMARCAD1;;chr12:53574464..53574539,+!p1@ZNF740!0.30!17.02!ZNF740;;chr1:249132410..249132456,+!p1@ZNF672!0.30!13.02!ZNF672;;chr19:58740266..58740297,+!p1@ZNF544!0.30!12.50!ZNF544;;chr19:58238958..58239000,-!p1@ZNF671!0.30!6.77!ZNF671;;chr19:23869970..23869991,-!p1@ZNF675!0.30!6.25!ZNF675;;chr19:53360870..53360873,-!p1@ZNF468!0.30!5.90!ZNF468;;chr16:25269134..25269180,-!p1@ZKSCAN2!0.30!5.73!ZKSCAN2;;chr3:52719546..52719636,-!p3@PBRM1!0.30!5.73!PBRM1;;chr16:29817433..29817468,+!p8@MAZ!0.30!4.86!MAZ;;chr5:178157609..178157650,-!p2@ZNF354A!0.30!4.34!ZNF354A;;chr1:211432823..211432851,+!p3@RCOR3!0.30!3.82!RCOR3;;chr11:57103312..57103321,-!p2@SSRP1!0.30!2.60!SSRP1;;chr8:123793988..123794016,+!p1@ZHX2!0.30!2.43!ZHX2;;chr16:8962202..8962222,-!p3@CARHSP1!0.30!2.43!CARHSP1;;chr1:204042723..204042784,+!p3@SOX13!0.30!2.26!SOX13;;chr19:53496806..53496848,-!p2@ZNF702P!0.30!1.91!ZNF702P;;chr19:57999082..57999095,+!p2@ZNF419!0.30!1.91!ZNF419;;chr19:35417844..35417877,+!p2@ZNF30!0.30!1.91!ZNF30;;chr19:38085768..38085821,+!p1@ZNF540!0.30!1.91!ZNF540;;chr4:124361..124372,+!p3@ZNF718!0.30!1.91!ZNF718;;chr7:77428227..77428242,+!p3@PHTF2!0.30!1.91!PHTF2;;chr4:87967965..87967983,+!p16@AFF1!0.30!1.74!AFF1;;chr3:44626359..44626387,+!p4@ZNF197!0.30!1.56!ZNF197;;chr15:37392593..37392607,-!p13@MEIS2!0.30!1.39!MEIS2;;chr5:150284461..150284481,-!p4@ZNF300!0.30!1.39!ZNF300;;chr4:106157017..106157029,+!p7@TET2!0.30!1.22!TET2;;chr12:124457746..124457828,+!p1@ZNF664!0.29!66.32!ZNF664;;chr8:41909496..41909512,-!p1@KAT6A!0.29!53.13!KAT6A;;chr19:37064145..37064216,-!p1@ZNF529!0.29!14.41!ZNF529;;chr20:18269151..18269212,+!p1@ZNF133!0.29!14.24!ZNF133;;chr16:89284104..89284150,+!p1@ZNF778!0.29!11.81!ZNF778;;chr19:58258167..58258201,+!p1@ZNF776!0.29!9.90!ZNF776;;
|fonse_cell_line=FF:0100400,FF:0101120
|fonse_cell_line=FF:0100400,FF:0101120
|fonse_cell_line_closure=FF:0100400,FF:0101120
|fonse_cell_line_closure=FF:0100400,FF:0101120
Line 35: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinosarcoma%2520cell%2520line%253aJHUCS-1.CNhs11747.10642-109A3.hg38.nobarcode.ctss.bed.gz
|id=FF:10642-109A3
|id=FF:10642-109A3
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100197
|is_a=EFO:0002091;;FF:0000210;;FF:0100197
|is_obsolete=
|library_id=CNhs11747
|library_id_phase_based=2:CNhs11747
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10642
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10642
|name=carcinosarcoma cell line:JHUCS-1
|name=carcinosarcoma cell line:JHUCS-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11747,LSID819,release009,COMPLETED
|profile_hcage=CNhs11747,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.0952686154731603,0.596838792174233,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0238748213469344,0,0,0,0.562372303081235,0,0.820714479590808,0,0,0.275728461136925,0,0,0,0,0,0,0,0,0,0,0,0,-0.0489618587643146,0.357137298265528,0,0,0,0,0,0,0,0.0105496539835497,0,0,0,0,0,0.0173134829987806,0.378216142381295,0.311692689673182,0,0,-0.0278142770203288,0,0,0,0,0,0,0,0,0.182093516720354,0,0,0,0,0,0,0,0,0.0695293501927681,0.034764675096384,0,0,0,0,0.0555042123729621,0.0188666482403312,0.034764675096384,0,0,0.297589743639987,0.237531071210236,0,0,0,0,0.131006216741372,0.513383125231848,0,0,0,0,0,0,0.182093516720354,0,0,0.898352873337385,0,0,0,0,0,0,0,0.16004361467589,0.310002557794194,0,0,-0.0519847955579885,-0.106537941230104,0,0,0.182093516720354,0,0,0
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|rna_box=109
|rna_box=109
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 77:
|rna_weight_ug=198.87
|rna_weight_ug=198.87
|sample_age=56
|sample_age=56
|sample_category=cell lines
|sample_cell_catalog=RCB1547
|sample_cell_catalog=RCB1547
|sample_cell_line=JHUCS-1
|sample_cell_line=JHUCS-1
Line 69: Line 90:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.72706273270296e-301!GO:0043226;organelle;3.95652684825746e-265!GO:0043229;intracellular organelle;1.80161971317419e-264!GO:0043231;intracellular membrane-bound organelle;4.81736951356693e-262!GO:0043227;membrane-bound organelle;6.16732826027855e-262!GO:0044422;organelle part;1.61826630284776e-161!GO:0044446;intracellular organelle part;7.13693896892507e-160!GO:0005737;cytoplasm;2.84006931264934e-158!GO:0005634;nucleus;1.42785141752175e-145!GO:0032991;macromolecular complex;5.00227352957525e-114!GO:0044444;cytoplasmic part;8.8984196153859e-108!GO:0043170;macromolecule metabolic process;4.16337128323235e-107!GO:0044238;primary metabolic process;4.33266763731108e-106!GO:0044237;cellular metabolic process;4.94287699650362e-105!GO:0044428;nuclear part;1.85754137512589e-98!GO:0030529;ribonucleoprotein complex;5.12016284137934e-93!GO:0003723;RNA binding;5.21046169395201e-86!GO:0043233;organelle lumen;5.03931616170549e-85!GO:0031974;membrane-enclosed lumen;5.03931616170549e-85!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.00953290243822e-84!GO:0043283;biopolymer metabolic process;1.49676436588161e-81!GO:0010467;gene expression;2.83659757159582e-77!GO:0005515;protein binding;6.9656594038953e-71!GO:0006396;RNA processing;1.90743972885679e-61!GO:0003676;nucleic acid binding;2.48052728356497e-60!GO:0005739;mitochondrion;1.26393266087484e-59!GO:0043234;protein complex;1.79966546427218e-58!GO:0016043;cellular component organization and biogenesis;7.02552069086334e-58!GO:0031981;nuclear lumen;8.99001666208181e-58!GO:0005840;ribosome;8.37818654970721e-51!GO:0016071;mRNA metabolic process;3.65848220429743e-50!GO:0016070;RNA metabolic process;9.55868389141947e-50!GO:0006259;DNA metabolic process;1.16422869748225e-46!GO:0008380;RNA splicing;8.23864538947139e-46!GO:0006996;organelle organization and biogenesis;3.54037149511777e-44!GO:0015031;protein transport;3.99074751829052e-44!GO:0031090;organelle membrane;8.85149273501222e-44!GO:0033036;macromolecule localization;9.58601038457532e-44!GO:0006397;mRNA processing;3.57361161997821e-43!GO:0006412;translation;4.26472118869702e-43!GO:0003735;structural constituent of ribosome;5.25269377709663e-43!GO:0043228;non-membrane-bound organelle;9.58083440105471e-43!GO:0043232;intracellular non-membrane-bound organelle;9.58083440105471e-43!GO:0031967;organelle envelope;1.41485552794207e-41!GO:0044429;mitochondrial part;1.75886404598097e-41!GO:0031975;envelope;1.7646482185918e-41!GO:0046907;intracellular transport;4.66691676179793e-40!GO:0045184;establishment of protein localization;3.9420297233871e-39!GO:0008104;protein localization;5.1638557336542e-39!GO:0033279;ribosomal subunit;1.01329395968545e-38!GO:0007049;cell cycle;1.39882623485645e-37!GO:0005654;nucleoplasm;2.03940259893448e-36!GO:0019538;protein metabolic process;1.9784019190973e-34!GO:0000166;nucleotide binding;3.62660928277751e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.62660928277751e-33!GO:0005681;spliceosome;4.31035934693858e-32!GO:0044249;cellular biosynthetic process;9.16426306944047e-31!GO:0009059;macromolecule biosynthetic process;1.21751035214712e-30!GO:0065003;macromolecular complex assembly;2.50661662313146e-30!GO:0006886;intracellular protein transport;2.80187307358974e-30!GO:0044267;cellular protein metabolic process;3.6030763217739e-30!GO:0009058;biosynthetic process;3.6030763217739e-30!GO:0051649;establishment of cellular localization;3.6030763217739e-30!GO:0006974;response to DNA damage stimulus;4.09018556020802e-30!GO:0044260;cellular macromolecule metabolic process;5.08604561969242e-30!GO:0051641;cellular localization;8.7099715840159e-30!GO:0005829;cytosol;2.41372800859479e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.01157583260849e-28!GO:0044451;nucleoplasm part;1.1700312168951e-28!GO:0022402;cell cycle process;6.79716629929041e-28!GO:0019866;organelle inner membrane;7.34578482864847e-28!GO:0005740;mitochondrial envelope;4.16391708264097e-27!GO:0006281;DNA repair;5.29048569340569e-27!GO:0022607;cellular component assembly;4.34015855626947e-26!GO:0000278;mitotic cell cycle;4.88498088146856e-26!GO:0005694;chromosome;6.29806639633289e-26!GO:0031966;mitochondrial membrane;6.90374022159733e-26!GO:0005743;mitochondrial inner membrane;4.64551256720876e-25!GO:0006260;DNA replication;3.77497690401009e-24!GO:0017111;nucleoside-triphosphatase activity;4.78829947599844e-23!GO:0044455;mitochondrial membrane part;1.17010991209623e-22!GO:0016462;pyrophosphatase activity;1.1731231727275e-22!GO:0032553;ribonucleotide binding;1.56881920675335e-22!GO:0032555;purine ribonucleotide binding;1.56881920675335e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.00104056495383e-22!GO:0006119;oxidative phosphorylation;2.95657105773274e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.26698122705419e-22!GO:0044445;cytosolic part;5.51188319414859e-22!GO:0022403;cell cycle phase;7.49689587384362e-22!GO:0000087;M phase of mitotic cell cycle;8.74584434927126e-22!GO:0044427;chromosomal part;1.08385537709488e-21!GO:0007067;mitosis;2.14908798246798e-21!GO:0051276;chromosome organization and biogenesis;2.82435010681086e-21!GO:0017076;purine nucleotide binding;4.337617925904e-21!GO:0005730;nucleolus;5.58416827015254e-21!GO:0015934;large ribosomal subunit;3.57721183121979e-20!GO:0016874;ligase activity;7.20036391729468e-20!GO:0051301;cell division;7.20036391729468e-20!GO:0015935;small ribosomal subunit;1.46526873675918e-19!GO:0022618;protein-RNA complex assembly;1.5246108339282e-19!GO:0006457;protein folding;1.9123020966872e-19!GO:0000279;M phase;5.93688578643523e-19!GO:0006512;ubiquitin cycle;6.02499014492912e-19!GO:0005524;ATP binding;6.86212865504442e-19!GO:0009719;response to endogenous stimulus;7.27061970738938e-19!GO:0032559;adenyl ribonucleotide binding;1.31067243854696e-18!GO:0012505;endomembrane system;6.7300948332165e-18!GO:0005746;mitochondrial respiratory chain;1.90169783004449e-17!GO:0015630;microtubule cytoskeleton;2.42002332477563e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.95593619839856e-17!GO:0008135;translation factor activity, nucleic acid binding;4.49019582526833e-17!GO:0031980;mitochondrial lumen;4.68195388965734e-17!GO:0005759;mitochondrial matrix;4.68195388965734e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.97113867946079e-17!GO:0030554;adenyl nucleotide binding;5.25415285720986e-17!GO:0019941;modification-dependent protein catabolic process;6.67937390778107e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.67937390778107e-17!GO:0019222;regulation of metabolic process;1.13007069769564e-16!GO:0044257;cellular protein catabolic process;1.77960834415324e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.88795548036452e-16!GO:0000375;RNA splicing, via transesterification reactions;1.88795548036452e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.88795548036452e-16!GO:0044265;cellular macromolecule catabolic process;2.59850371035045e-16!GO:0031965;nuclear membrane;5.14407258961754e-16!GO:0008134;transcription factor binding;5.92345663872854e-16!GO:0050794;regulation of cellular process;7.42715203613203e-16!GO:0050136;NADH dehydrogenase (quinone) activity;8.00151517340052e-16!GO:0003954;NADH dehydrogenase activity;8.00151517340052e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.00151517340052e-16!GO:0006350;transcription;1.03567316743017e-15!GO:0044453;nuclear membrane part;1.04994199670881e-15!GO:0005635;nuclear envelope;1.16098917452411e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.26571819218759e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.48652767776319e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.60371577998733e-15!GO:0016887;ATPase activity;5.71789878586671e-15!GO:0006605;protein targeting;6.07723792302537e-15!GO:0006323;DNA packaging;1.10515565087581e-14!GO:0042254;ribosome biogenesis and assembly;1.91924049461583e-14!GO:0051082;unfolded protein binding;2.3627739636002e-14!GO:0016604;nuclear body;2.6626152493312e-14!GO:0031323;regulation of cellular metabolic process;3.06990906319568e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.93196182455582e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.93196182455582e-14!GO:0043285;biopolymer catabolic process;4.09515287717492e-14!GO:0005643;nuclear pore;4.35700605431344e-14!GO:0005761;mitochondrial ribosome;5.16232499837329e-14!GO:0000313;organellar ribosome;5.16232499837329e-14!GO:0048770;pigment granule;5.16232499837329e-14!GO:0042470;melanosome;5.16232499837329e-14!GO:0042623;ATPase activity, coupled;5.4832291643308e-14!GO:0004386;helicase activity;6.38266095440528e-14!GO:0000502;proteasome complex (sensu Eukaryota);9.07186756804109e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.0088750060688e-13!GO:0042773;ATP synthesis coupled electron transport;1.0088750060688e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.0088750060688e-13!GO:0045271;respiratory chain complex I;1.0088750060688e-13!GO:0005747;mitochondrial respiratory chain complex I;1.0088750060688e-13!GO:0032774;RNA biosynthetic process;1.02842897127246e-13!GO:0006351;transcription, DNA-dependent;1.77652921801959e-13!GO:0016568;chromatin modification;2.51801964206616e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.40121570642319e-13!GO:0006403;RNA localization;4.35255269766484e-13!GO:0006261;DNA-dependent DNA replication;4.50043812691871e-13!GO:0009057;macromolecule catabolic process;4.90692721750037e-13!GO:0051726;regulation of cell cycle;4.9514800550236e-13!GO:0000074;regulation of progression through cell cycle;6.20058940684518e-13!GO:0030163;protein catabolic process;6.20058940684518e-13!GO:0010468;regulation of gene expression;8.22008149461593e-13!GO:0003743;translation initiation factor activity;9.53374360186853e-13!GO:0050657;nucleic acid transport;1.09248967464051e-12!GO:0051236;establishment of RNA localization;1.09248967464051e-12!GO:0050658;RNA transport;1.09248967464051e-12!GO:0006366;transcription from RNA polymerase II promoter;1.16580782732741e-12!GO:0048193;Golgi vesicle transport;1.45374954370135e-12!GO:0005783;endoplasmic reticulum;1.73765902468186e-12!GO:0006913;nucleocytoplasmic transport;2.22770272581814e-12!GO:0008565;protein transporter activity;2.22924284651315e-12!GO:0016607;nuclear speck;2.99898684858626e-12!GO:0051169;nuclear transport;5.56823963290262e-12!GO:0005794;Golgi apparatus;6.36870079321439e-12!GO:0016192;vesicle-mediated transport;7.21517234897953e-12!GO:0045449;regulation of transcription;8.49531331245453e-12!GO:0051186;cofactor metabolic process;1.80394139581199e-11!GO:0006413;translational initiation;2.05208520831704e-11!GO:0008026;ATP-dependent helicase activity;2.06018539920472e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.11207598430594e-11!GO:0000775;chromosome, pericentric region;2.75283670049934e-11!GO:0043412;biopolymer modification;3.20396563904777e-11!GO:0003677;DNA binding;4.16970393736381e-11!GO:0044248;cellular catabolic process;4.29399338933249e-11!GO:0046930;pore complex;7.11874157446471e-11!GO:0006355;regulation of transcription, DNA-dependent;8.16194051292766e-11!GO:0051028;mRNA transport;9.205612643717e-11!GO:0050789;regulation of biological process;9.66195914069804e-11!GO:0006399;tRNA metabolic process;9.79457395600733e-11!GO:0065002;intracellular protein transport across a membrane;1.0979083105601e-10!GO:0044432;endoplasmic reticulum part;1.22334468671888e-10!GO:0006446;regulation of translational initiation;1.48396390418473e-10!GO:0043566;structure-specific DNA binding;3.40584558343079e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.64275627494918e-10!GO:0003712;transcription cofactor activity;3.98797822266404e-10!GO:0030532;small nuclear ribonucleoprotein complex;7.61379652363394e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.0297355127856e-10!GO:0003697;single-stranded DNA binding;9.24098354768501e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.0264189775109e-09!GO:0006732;coenzyme metabolic process;1.25989935265963e-09!GO:0006364;rRNA processing;1.46777138006328e-09!GO:0008639;small protein conjugating enzyme activity;1.58176672628343e-09!GO:0006464;protein modification process;2.33674468694046e-09!GO:0009259;ribonucleotide metabolic process;2.94218899668472e-09!GO:0004842;ubiquitin-protein ligase activity;3.52499828370767e-09!GO:0000785;chromatin;3.63706330927688e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.65624428056889e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.65624428056889e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.65624428056889e-09!GO:0006163;purine nucleotide metabolic process;3.68545508854323e-09!GO:0016072;rRNA metabolic process;4.16644901498295e-09!GO:0006333;chromatin assembly or disassembly;4.41886647229523e-09!GO:0005819;spindle;4.80719154679021e-09!GO:0005874;microtubule;5.79638330066433e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.83829958005998e-09!GO:0017038;protein import;7.97480659113283e-09!GO:0005813;centrosome;9.03855054994799e-09!GO:0043038;amino acid activation;1.33394592472984e-08!GO:0006418;tRNA aminoacylation for protein translation;1.33394592472984e-08!GO:0043039;tRNA aminoacylation;1.33394592472984e-08!GO:0043687;post-translational protein modification;1.58211305215407e-08!GO:0019787;small conjugating protein ligase activity;1.63624294013522e-08!GO:0019829;cation-transporting ATPase activity;1.69513800892947e-08!GO:0045333;cellular respiration;2.08121287691189e-08!GO:0006461;protein complex assembly;2.08812385627212e-08!GO:0005793;ER-Golgi intermediate compartment;2.26132490274035e-08!GO:0009150;purine ribonucleotide metabolic process;2.37969596803802e-08!GO:0005815;microtubule organizing center;2.62545903957701e-08!GO:0005667;transcription factor complex;2.69776145880487e-08!GO:0006164;purine nucleotide biosynthetic process;2.92193135388538e-08!GO:0007017;microtubule-based process;3.11062045664238e-08!GO:0009060;aerobic respiration;3.36868895268023e-08!GO:0000245;spliceosome assembly;3.82219040627902e-08!GO:0016881;acid-amino acid ligase activity;5.44705524719144e-08!GO:0009260;ribonucleotide biosynthetic process;5.53480553527355e-08!GO:0015986;ATP synthesis coupled proton transport;5.82729644389047e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.82729644389047e-08!GO:0005657;replication fork;6.13310806385265e-08!GO:0065004;protein-DNA complex assembly;6.39314642324268e-08!GO:0009141;nucleoside triphosphate metabolic process;7.23193147276973e-08!GO:0009199;ribonucleoside triphosphate metabolic process;7.696465066523e-08!GO:0000075;cell cycle checkpoint;1.12220696208118e-07!GO:0016363;nuclear matrix;1.28716865387303e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35947321328648e-07!GO:0009055;electron carrier activity;1.46717318668341e-07!GO:0007051;spindle organization and biogenesis;1.63261864892698e-07!GO:0016779;nucleotidyltransferase activity;1.64607535689289e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.72113924143643e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.85228813968043e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.86318365718426e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.86318365718426e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91255303708567e-07!GO:0003682;chromatin binding;2.07733385027564e-07!GO:0008094;DNA-dependent ATPase activity;2.2838170199908e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.32295003774226e-07!GO:0032446;protein modification by small protein conjugation;2.39430903977491e-07!GO:0048475;coated membrane;2.48531914897182e-07!GO:0030117;membrane coat;2.48531914897182e-07!GO:0051188;cofactor biosynthetic process;2.65237172934383e-07!GO:0046034;ATP metabolic process;2.65237172934383e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.07704735004658e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.07704735004658e-07!GO:0005789;endoplasmic reticulum membrane;3.74726938211758e-07!GO:0051329;interphase of mitotic cell cycle;3.87938031741415e-07!GO:0016564;transcription repressor activity;4.285745679421e-07!GO:0031988;membrane-bound vesicle;4.98461579281029e-07!GO:0007005;mitochondrion organization and biogenesis;5.78851763947879e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.13977249466326e-07!GO:0016567;protein ubiquitination;6.23987589158436e-07!GO:0006099;tricarboxylic acid cycle;6.4916073837309e-07!GO:0046356;acetyl-CoA catabolic process;6.4916073837309e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.19845496529525e-07!GO:0031982;vesicle;7.65869743525089e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.681141724874e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.681141724874e-07!GO:0016023;cytoplasmic membrane-bound vesicle;7.73009146652061e-07!GO:0045259;proton-transporting ATP synthase complex;8.6805262439561e-07!GO:0006754;ATP biosynthetic process;8.81821136291982e-07!GO:0006753;nucleoside phosphate metabolic process;8.81821136291982e-07!GO:0043623;cellular protein complex assembly;9.21360883833288e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.10909734697512e-06!GO:0051325;interphase;1.14147934041413e-06!GO:0031410;cytoplasmic vesicle;1.21856177581803e-06!GO:0007010;cytoskeleton organization and biogenesis;1.26295707752845e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.33663490375132e-06!GO:0006084;acetyl-CoA metabolic process;1.3910398285068e-06!GO:0007059;chromosome segregation;1.85274136151781e-06!GO:0009109;coenzyme catabolic process;2.06747090192705e-06!GO:0044431;Golgi apparatus part;2.1545705430076e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.25740147595393e-06!GO:0045786;negative regulation of progression through cell cycle;2.34151460715655e-06!GO:0000776;kinetochore;2.56607383596936e-06!GO:0051170;nuclear import;2.67415279218748e-06!GO:0003729;mRNA binding;2.71235565267954e-06!GO:0005525;GTP binding;2.90854336341299e-06!GO:0015631;tubulin binding;3.00274394995055e-06!GO:0009117;nucleotide metabolic process;3.01679785965706e-06!GO:0031324;negative regulation of cellular metabolic process;3.01679785965706e-06!GO:0006606;protein import into nucleus;3.01679785965706e-06!GO:0009108;coenzyme biosynthetic process;3.89035725590344e-06!GO:0016740;transferase activity;4.4027128461778e-06!GO:0006752;group transfer coenzyme metabolic process;4.48660835785482e-06!GO:0000151;ubiquitin ligase complex;5.14930164281923e-06!GO:0030120;vesicle coat;5.16845963248955e-06!GO:0030662;coated vesicle membrane;5.16845963248955e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;6.23119913447454e-06!GO:0003690;double-stranded DNA binding;6.69615238269655e-06!GO:0003924;GTPase activity;6.90140709783539e-06!GO:0048523;negative regulation of cellular process;6.92325376862106e-06!GO:0045045;secretory pathway;6.9845005232036e-06!GO:0003724;RNA helicase activity;7.03280319177877e-06!GO:0006613;cotranslational protein targeting to membrane;8.13810110019746e-06!GO:0003714;transcription corepressor activity;9.73840969301533e-06!GO:0051187;cofactor catabolic process;9.80263138016095e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.06304742566607e-05!GO:0008270;zinc ion binding;1.06360078525271e-05!GO:0005798;Golgi-associated vesicle;1.06378371967833e-05!GO:0003684;damaged DNA binding;1.12670490573789e-05!GO:0005788;endoplasmic reticulum lumen;1.21211250305681e-05!GO:0003899;DNA-directed RNA polymerase activity;1.27572186673157e-05!GO:0009892;negative regulation of metabolic process;1.35737928151677e-05!GO:0009056;catabolic process;1.58247512399163e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.29046386716264e-05!GO:0016481;negative regulation of transcription;3.11638268755967e-05!GO:0000059;protein import into nucleus, docking;3.47616057164729e-05!GO:0008017;microtubule binding;3.94151307318476e-05!GO:0003713;transcription coactivator activity;4.15805466032096e-05!GO:0051052;regulation of DNA metabolic process;4.38595330122333e-05!GO:0005762;mitochondrial large ribosomal subunit;4.5112454450381e-05!GO:0000315;organellar large ribosomal subunit;4.5112454450381e-05!GO:0051168;nuclear export;4.57329292350959e-05!GO:0051427;hormone receptor binding;4.61012669200527e-05!GO:0016563;transcription activator activity;4.63690319051952e-05!GO:0004298;threonine endopeptidase activity;5.35875481341525e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.78389699662404e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.1725437313958e-05!GO:0032561;guanyl ribonucleotide binding;6.26997680562291e-05!GO:0019001;guanyl nucleotide binding;6.26997680562291e-05!GO:0043021;ribonucleoprotein binding;6.80697845805722e-05!GO:0006302;double-strand break repair;8.28851546955048e-05!GO:0006793;phosphorus metabolic process;9.04097218057488e-05!GO:0006796;phosphate metabolic process;9.04097218057488e-05!GO:0065007;biological regulation;9.73235553564809e-05!GO:0035257;nuclear hormone receptor binding;0.000101800549378063!GO:0000314;organellar small ribosomal subunit;0.000104963123755316!GO:0005763;mitochondrial small ribosomal subunit;0.000104963123755316!GO:0005768;endosome;0.000109811357501254!GO:0006839;mitochondrial transport;0.000109811357501254!GO:0003678;DNA helicase activity;0.000118712063014741!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000122353217841065!GO:0016310;phosphorylation;0.000135991726447534!GO:0006414;translational elongation;0.000140713465960592!GO:0005876;spindle microtubule;0.000146400794703696!GO:0048471;perinuclear region of cytoplasm;0.000154511284384872!GO:0000228;nuclear chromosome;0.000157029618263549!GO:0000139;Golgi membrane;0.000161883078101437!GO:0016859;cis-trans isomerase activity;0.000164709165822648!GO:0006270;DNA replication initiation;0.000173962489509479!GO:0031072;heat shock protein binding;0.000173962489509479!GO:0007052;mitotic spindle organization and biogenesis;0.000179618342155095!GO:0008186;RNA-dependent ATPase activity;0.000186681433645283!GO:0008654;phospholipid biosynthetic process;0.000188799290353003!GO:0016741;transferase activity, transferring one-carbon groups;0.000191850491768832!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000194630764239815!GO:0032508;DNA duplex unwinding;0.000202420369637451!GO:0032392;DNA geometric change;0.000202420369637451!GO:0030867;rough endoplasmic reticulum membrane;0.000215222127292939!GO:0005875;microtubule associated complex;0.000233740352672665!GO:0031497;chromatin assembly;0.000242458127770022!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00025624849677205!GO:0006284;base-excision repair;0.00025624849677205!GO:0008168;methyltransferase activity;0.000262660033016065!GO:0006612;protein targeting to membrane;0.000263949316199985!GO:0007006;mitochondrial membrane organization and biogenesis;0.000264949838225297!GO:0003746;translation elongation factor activity;0.000266591990912611!GO:0043681;protein import into mitochondrion;0.000273024128492135!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000275842420035558!GO:0006383;transcription from RNA polymerase III promoter;0.000291415640767746!GO:0006352;transcription initiation;0.000307528224239514!GO:0006310;DNA recombination;0.000318186922637933!GO:0007093;mitotic cell cycle checkpoint;0.000342754450649476!GO:0048519;negative regulation of biological process;0.000389165336729313!GO:0009165;nucleotide biosynthetic process;0.000413168100257925!GO:0016853;isomerase activity;0.000421536816769254!GO:0006334;nucleosome assembly;0.000426481042769427!GO:0005637;nuclear inner membrane;0.000438521676035866!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000463353235629027!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00047096457697076!GO:0006338;chromatin remodeling;0.000471656938757016!GO:0044440;endosomal part;0.000474209139563752!GO:0010008;endosome membrane;0.000474209139563752!GO:0046914;transition metal ion binding;0.00049724689082811!GO:0006268;DNA unwinding during replication;0.000509105679738383!GO:0006402;mRNA catabolic process;0.000525074373626259!GO:0004004;ATP-dependent RNA helicase activity;0.000569167145836635!GO:0015980;energy derivation by oxidation of organic compounds;0.000597290544382421!GO:0031124;mRNA 3'-end processing;0.000641020394489056!GO:0044452;nucleolar part;0.000659801226301945!GO:0016251;general RNA polymerase II transcription factor activity;0.000663042217248906!GO:0007088;regulation of mitosis;0.000702020859914489!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000715162424085512!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000715162424085512!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000715162424085512!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000718267309947778!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00072713716301006!GO:0000922;spindle pole;0.000824185381366021!GO:0051920;peroxiredoxin activity;0.000856889422147079!GO:0005684;U2-dependent spliceosome;0.000902158669129561!GO:0008033;tRNA processing;0.000929591314743386!GO:0012501;programmed cell death;0.00110880904589688!GO:0000049;tRNA binding;0.00113086268230261!GO:0019899;enzyme binding;0.0011485686190737!GO:0051087;chaperone binding;0.00119515979088616!GO:0004674;protein serine/threonine kinase activity;0.00120561751808866!GO:0004527;exonuclease activity;0.00124039182132819!GO:0003702;RNA polymerase II transcription factor activity;0.00126974872160943!GO:0006915;apoptosis;0.00129131738877725!GO:0006275;regulation of DNA replication;0.00137984989916614!GO:0000082;G1/S transition of mitotic cell cycle;0.00138487355983656!GO:0005770;late endosome;0.00139466002917773!GO:0000792;heterochromatin;0.00140258264745727!GO:0051539;4 iron, 4 sulfur cluster binding;0.00146778106967604!GO:0045454;cell redox homeostasis;0.00153735541792133!GO:0051789;response to protein stimulus;0.00158925023672041!GO:0006986;response to unfolded protein;0.00158925023672041!GO:0043596;nuclear replication fork;0.00159776076911132!GO:0048500;signal recognition particle;0.00160226937748904!GO:0030118;clathrin coat;0.00166110380353535!GO:0005048;signal sequence binding;0.00189367345318883!GO:0008312;7S RNA binding;0.00192432381672867!GO:0000910;cytokinesis;0.00204672980320804!GO:0035258;steroid hormone receptor binding;0.00207897376206947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00210527346181799!GO:0015399;primary active transmembrane transporter activity;0.00210527346181799!GO:0046474;glycerophospholipid biosynthetic process;0.00213198263798336!GO:0051246;regulation of protein metabolic process;0.0021534045787026!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00216749701943275!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00216749701943275!GO:0031252;leading edge;0.0022607849725549!GO:0006626;protein targeting to mitochondrion;0.00228864253539355!GO:0043284;biopolymer biosynthetic process;0.00235201570880468!GO:0030880;RNA polymerase complex;0.00251753926358472!GO:0030135;coated vesicle;0.00253789266706875!GO:0008276;protein methyltransferase activity;0.00259181541032757!GO:0003711;transcription elongation regulator activity;0.00274440188621879!GO:0006401;RNA catabolic process;0.00278985705806407!GO:0006891;intra-Golgi vesicle-mediated transport;0.00279038405510826!GO:0000819;sister chromatid segregation;0.00279432467084975!GO:0051252;regulation of RNA metabolic process;0.00287194462737229!GO:0044454;nuclear chromosome part;0.00289193927055286!GO:0032200;telomere organization and biogenesis;0.00295133946255713!GO:0000723;telomere maintenance;0.00295133946255713!GO:0031123;RNA 3'-end processing;0.00295133946255713!GO:0006405;RNA export from nucleus;0.00298659546603818!GO:0045892;negative regulation of transcription, DNA-dependent;0.00299774473046135!GO:0030176;integral to endoplasmic reticulum membrane;0.00303156806036404!GO:0006378;mRNA polyadenylation;0.00312688650565863!GO:0042393;histone binding;0.0031869959957894!GO:0005885;Arp2/3 protein complex;0.00324074405705762!GO:0051540;metal cluster binding;0.00331128238827354!GO:0051536;iron-sulfur cluster binding;0.00331128238827354!GO:0030134;ER to Golgi transport vesicle;0.00338030963316353!GO:0005669;transcription factor TFIID complex;0.00343973887258827!GO:0008139;nuclear localization sequence binding;0.0035029434157876!GO:0016272;prefoldin complex;0.00356625651970596!GO:0000070;mitotic sister chromatid segregation;0.0035769858899195!GO:0030137;COPI-coated vesicle;0.0037587492699263!GO:0005905;coated pit;0.00378236277020507!GO:0032940;secretion by cell;0.00379038654080218!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0037950115891574!GO:0045047;protein targeting to ER;0.0037950115891574!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00379635260280822!GO:0004576;oligosaccharyl transferase activity;0.00387888483659524!GO:0008022;protein C-terminus binding;0.00397217139850917!GO:0006818;hydrogen transport;0.00397451768160062!GO:0008219;cell death;0.00424019679862966!GO:0016265;death;0.00424019679862966!GO:0046489;phosphoinositide biosynthetic process;0.0042692496693892!GO:0006595;polyamine metabolic process;0.00438097397460242!GO:0006289;nucleotide-excision repair;0.0046165351926859!GO:0005769;early endosome;0.00468739105419242!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00475176889417299!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00484309180259041!GO:0015992;proton transport;0.00498669108732283!GO:0000339;RNA cap binding;0.00503359566433759!GO:0008287;protein serine/threonine phosphatase complex;0.00503580061768494!GO:0030658;transport vesicle membrane;0.00515738612195538!GO:0005663;DNA replication factor C complex;0.00521132156158128!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00538987439403418!GO:0000428;DNA-directed RNA polymerase complex;0.00538987439403418!GO:0006376;mRNA splice site selection;0.00541085216854366!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00541085216854366!GO:0043601;nuclear replisome;0.00541277181207879!GO:0030894;replisome;0.00541277181207879!GO:0030127;COPII vesicle coat;0.00564534791995285!GO:0012507;ER to Golgi transport vesicle membrane;0.00564534791995285!GO:0033116;ER-Golgi intermediate compartment membrane;0.00565848000573217!GO:0030521;androgen receptor signaling pathway;0.00569235815262337!GO:0008250;oligosaccharyl transferase complex;0.0057959333848662!GO:0007050;cell cycle arrest;0.00600760414147299!GO:0016787;hydrolase activity;0.00605379748171071!GO:0044450;microtubule organizing center part;0.00606577208605646!GO:0006611;protein export from nucleus;0.00606577208605646!GO:0004003;ATP-dependent DNA helicase activity;0.00643124944917701!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00683514206956818!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00718481602573858!GO:0019843;rRNA binding;0.00725628954253589!GO:0030663;COPI coated vesicle membrane;0.00739069050628987!GO:0030126;COPI vesicle coat;0.00739069050628987!GO:0040029;regulation of gene expression, epigenetic;0.00739341869212726!GO:0046467;membrane lipid biosynthetic process;0.00782104608420135!GO:0009116;nucleoside metabolic process;0.00784628659182424!GO:0006144;purine base metabolic process;0.00786885646594802!GO:0005869;dynactin complex;0.00789680349223542!GO:0000781;chromosome, telomeric region;0.00805327410471115!GO:0001558;regulation of cell growth;0.00817304542197743!GO:0016584;nucleosome positioning;0.00822533883919668!GO:0008361;regulation of cell size;0.0082849684997631!GO:0030133;transport vesicle;0.00830954615085367!GO:0030660;Golgi-associated vesicle membrane;0.00889125897350619!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00900717965106469!GO:0016044;membrane organization and biogenesis;0.00900717965106469!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00908798443988352!GO:0006607;NLS-bearing substrate import into nucleus;0.00917544311127326!GO:0016585;chromatin remodeling complex;0.00929834203820266!GO:0016049;cell growth;0.00968401738652867!GO:0031570;DNA integrity checkpoint;0.00971940424983487!GO:0005832;chaperonin-containing T-complex;0.00982634694712498!GO:0043022;ribosome binding;0.0100164732776078!GO:0000725;recombinational repair;0.0102680376017962!GO:0000724;double-strand break repair via homologous recombination;0.0102680376017962!GO:0007018;microtubule-based movement;0.0110487281255129!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0111669861487944!GO:0007264;small GTPase mediated signal transduction;0.0114919038524431!GO:0019783;small conjugating protein-specific protease activity;0.0118717998742436!GO:0048487;beta-tubulin binding;0.0119148258527483!GO:0030027;lamellipodium;0.0119210713185328!GO:0007004;telomere maintenance via telomerase;0.0125693126076646!GO:0045792;negative regulation of cell size;0.0126732591857848!GO:0005791;rough endoplasmic reticulum;0.0127109445963618!GO:0009112;nucleobase metabolic process;0.01310214822643!GO:0051053;negative regulation of DNA metabolic process;0.0134166543247078!GO:0032259;methylation;0.0136624808525592!GO:0004843;ubiquitin-specific protease activity;0.0137187136408806!GO:0008180;signalosome;0.0137657789182081!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.01400736119508!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0141662715654094!GO:0005741;mitochondrial outer membrane;0.014521545710489!GO:0031577;spindle checkpoint;0.0147052474331898!GO:0006367;transcription initiation from RNA polymerase II promoter;0.014760662564034!GO:0051287;NAD binding;0.014874906178207!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0148987701524684!GO:0015002;heme-copper terminal oxidase activity;0.0148987701524684!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0148987701524684!GO:0004129;cytochrome-c oxidase activity;0.0148987701524684!GO:0030308;negative regulation of cell growth;0.0151390396089035!GO:0005758;mitochondrial intermembrane space;0.0156964601908419!GO:0031970;organelle envelope lumen;0.0158957827604494!GO:0008092;cytoskeletal protein binding;0.0169107818377603!GO:0043492;ATPase activity, coupled to movement of substances;0.016987530728192!GO:0030518;steroid hormone receptor signaling pathway;0.0170705386971529!GO:0004518;nuclease activity;0.0171411115894122!GO:0043130;ubiquitin binding;0.0171922289324258!GO:0032182;small conjugating protein binding;0.0171922289324258!GO:0031968;organelle outer membrane;0.0179466960336581!GO:0030433;ER-associated protein catabolic process;0.0181265854936581!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0181265854936581!GO:0030384;phosphoinositide metabolic process;0.018169986497418!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.018169986497418!GO:0000209;protein polyubiquitination;0.0181941895508492!GO:0043631;RNA polyadenylation;0.0184235133979352!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0185795662222852!GO:0004221;ubiquitin thiolesterase activity;0.0186095179590152!GO:0030119;AP-type membrane coat adaptor complex;0.0189462168141497!GO:0006301;postreplication repair;0.0189462168141497!GO:0000178;exosome (RNase complex);0.0189659351241536!GO:0019867;outer membrane;0.0190629980704587!GO:0008097;5S rRNA binding;0.0190692936255066!GO:0043414;biopolymer methylation;0.0191035078455778!GO:0043488;regulation of mRNA stability;0.0191902247982168!GO:0043487;regulation of RNA stability;0.0191902247982168!GO:0004523;ribonuclease H activity;0.0192527522651387!GO:0033170;DNA-protein loading ATPase activity;0.0192796958422091!GO:0003689;DNA clamp loader activity;0.0192796958422091!GO:0016197;endosome transport;0.020113276408767!GO:0050681;androgen receptor binding;0.0205228687704082!GO:0006916;anti-apoptosis;0.0205228687704082!GO:0051128;regulation of cellular component organization and biogenesis;0.0207920893993551!GO:0042770;DNA damage response, signal transduction;0.0210144270100167!GO:0003887;DNA-directed DNA polymerase activity;0.0217267861513442!GO:0042054;histone methyltransferase activity;0.0219948492727146!GO:0006892;post-Golgi vesicle-mediated transport;0.0226010728325394!GO:0017134;fibroblast growth factor binding;0.0226764600364987!GO:0000118;histone deacetylase complex;0.0230825353002241!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.023574568509355!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0237369682356005!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0240022935096793!GO:0010257;NADH dehydrogenase complex assembly;0.0240022935096793!GO:0033108;mitochondrial respiratory chain complex assembly;0.0240022935096793!GO:0030131;clathrin adaptor complex;0.0240432920541492!GO:0006505;GPI anchor metabolic process;0.0241330311932762!GO:0005652;nuclear lamina;0.0243244552089619!GO:0018196;peptidyl-asparagine modification;0.0245805019950722!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0245805019950722!GO:0030132;clathrin coat of coated pit;0.0246266318530253!GO:0006220;pyrimidine nucleotide metabolic process;0.0247041987111532!GO:0000793;condensed chromosome;0.0250789727868902!GO:0022406;membrane docking;0.0255787416160586!GO:0048278;vesicle docking;0.0255787416160586!GO:0016279;protein-lysine N-methyltransferase activity;0.0255787416160586!GO:0018024;histone-lysine N-methyltransferase activity;0.0255787416160586!GO:0016278;lysine N-methyltransferase activity;0.0255787416160586!GO:0035267;NuA4 histone acetyltransferase complex;0.0258198987394097!GO:0007040;lysosome organization and biogenesis;0.0258198987394097!GO:0005665;DNA-directed RNA polymerase II, core complex;0.026071587422178!GO:0008601;protein phosphatase type 2A regulator activity;0.0263317632149519!GO:0005881;cytoplasmic microtubule;0.0263645719758861!GO:0009303;rRNA transcription;0.0265595543243977!GO:0016790;thiolester hydrolase activity;0.0272923737118579!GO:0008536;Ran GTPase binding;0.0275445760372478!GO:0007021;tubulin folding;0.027701613657869!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0284000786129984!GO:0031901;early endosome membrane;0.0287213169187558!GO:0051059;NF-kappaB binding;0.0287213169187558!GO:0004722;protein serine/threonine phosphatase activity;0.0287213169187558!GO:0000152;nuclear ubiquitin ligase complex;0.0287213169187558!GO:0009066;aspartate family amino acid metabolic process;0.0290620510264014!GO:0005784;translocon complex;0.0303766332380394!GO:0043189;H4/H2A histone acetyltransferase complex;0.0305275761476201!GO:0006506;GPI anchor biosynthetic process;0.0307074047476078!GO:0003756;protein disulfide isomerase activity;0.0308649768630658!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0308649768630658!GO:0051656;establishment of organelle localization;0.0314947820696304!GO:0022890;inorganic cation transmembrane transporter activity;0.0326871919371531!GO:0000790;nuclear chromatin;0.0331785691597864!GO:0043433;negative regulation of transcription factor activity;0.0331785691597864!GO:0000287;magnesium ion binding;0.0340739622936066!GO:0046112;nucleobase biosynthetic process;0.0343723888954272!GO:0008156;negative regulation of DNA replication;0.0347145730645527!GO:0051320;S phase;0.0349478191950428!GO:0006278;RNA-dependent DNA replication;0.0349533646513187!GO:0046982;protein heterodimerization activity;0.0350696927574587!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0351274495353661!GO:0030508;thiol-disulfide exchange intermediate activity;0.0351754637551364!GO:0007034;vacuolar transport;0.0356368685299479!GO:0000123;histone acetyltransferase complex;0.0359207619734759!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0362423133622325!GO:0050178;phenylpyruvate tautomerase activity;0.0367277976758972!GO:0006650;glycerophospholipid metabolic process;0.0368961488834066!GO:0046483;heterocycle metabolic process;0.0369257401552056!GO:0000077;DNA damage checkpoint;0.0369569836777919!GO:0030032;lamellipodium biogenesis;0.0369813529303098!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.037181290678503!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0385280816581536!GO:0046426;negative regulation of JAK-STAT cascade;0.0385889426445548!GO:0008143;poly(A) binding;0.0390871755194427!GO:0030496;midbody;0.0392972820416321!GO:0005862;muscle thin filament tropomyosin;0.0400014931236833!GO:0019206;nucleoside kinase activity;0.0404360466550934!GO:0000930;gamma-tubulin complex;0.040667383734665!GO:0043624;cellular protein complex disassembly;0.0407792404460618!GO:0030911;TPR domain binding;0.0415557542410855!GO:0000805;X chromosome;0.0425130415706911!GO:0001740;Barr body;0.0425130415706911!GO:0006497;protein amino acid lipidation;0.0427366399295378!GO:0006984;ER-nuclear signaling pathway;0.0431155579414956!GO:0032984;macromolecular complex disassembly;0.0431155579414956!GO:0005658;alpha DNA polymerase:primase complex;0.0434115095906523!GO:0000086;G2/M transition of mitotic cell cycle;0.0436976393369498!GO:0042158;lipoprotein biosynthetic process;0.0438960684799215!GO:0006904;vesicle docking during exocytosis;0.0445472946400101!GO:0045502;dynein binding;0.0452280497247356!GO:0042981;regulation of apoptosis;0.0452958805883891!GO:0033673;negative regulation of kinase activity;0.0456452705581631!GO:0006469;negative regulation of protein kinase activity;0.0456452705581631!GO:0043069;negative regulation of programmed cell death;0.0456842715573927!GO:0007346;regulation of progression through mitotic cell cycle;0.0462924062155569!GO:0000084;S phase of mitotic cell cycle;0.0469008769249865!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0477919740025974!GO:0047485;protein N-terminus binding;0.0481779374934513!GO:0043067;regulation of programmed cell death;0.0486310569073817!GO:0042769;DNA damage response, detection of DNA damage;0.0493129794431309!GO:0006564;L-serine biosynthetic process;0.0494831287633947!GO:0005773;vacuole;0.04957177329974
|sample_id=10642
|sample_id=10642
|sample_note=
|sample_note=
Line 76: Line 98:
|sample_tissue=uterus
|sample_tissue=uterus
|top_motifs=TFDP1:2.68285363043;BREu{core}:2.67183040206;NKX2-1,4:2.4511143936;POU1F1:2.32842384761;AHR_ARNT_ARNT2:2.1430088239;TEF:2.08615662281;RBPJ:2.0792583225;E2F1..5:2.00640563271;POU6F1:1.96068056979;PAX4:1.92147560743;NKX6-1,2:1.73815610782;PAX3,7:1.468556054;POU3F1..4:1.4656915574;DBP:1.46184939271;PITX1..3:1.41028300962;NFY{A,B,C}:1.39591075555;NKX2-3_NKX2-5:1.39303520961;YY1:1.37093849353;ZNF143:1.27509860856;FOXM1:1.24730656156;ZNF384:1.23952110213;EVI1:1.23266702446;PBX1:1.20080792948;NRF1:1.19909799902;ALX1:1.17796488353;MTE{core}:1.1672394774;CDX1,2,4:1.14627928694;ARID5B:1.14556161082;PRRX1,2:1.07759025112;TFAP2B:1.06344874119;CDC5L:1.04476703861;RREB1:1.02640719071;ZFP161:1.02528790606;MED-1{core}:1.010024316;NKX3-1:1.00481834433;AIRE:0.96878645707;CUX2:0.967210934935;PATZ1:0.966048055653;GFI1:0.958135858569;TOPORS:0.950858715773;FOXP1:0.902073250524;POU5F1:0.885075656413;MZF1:0.877556764756;GATA4:0.863230295524;PAX8:0.859756130273;HOX{A4,D4}:0.854232997824;STAT1,3:0.817828510961;CRX:0.777344955227;ZBTB16:0.770786441105;ATF4:0.76872960717;PDX1:0.764317105438;ZBTB6:0.749073679144;NR1H4:0.748199800266;ELK1,4_GABP{A,B1}:0.744190998004;IKZF2:0.736317869477;RFX1:0.721779383918;FOXD3:0.709529257344;ONECUT1,2:0.701803678463;MYB:0.673538446892;ZIC1..3:0.603250294888;FOXP3:0.588611359212;PRDM1:0.576940030369;KLF4:0.574649373104;REST:0.572187364406;UFEwm:0.52867836745;ESRRA:0.522071692449;TAL1_TCF{3,4,12}:0.489610912466;PAX5:0.434462343072;GTF2I:0.419442609511;LHX3,4:0.415408753418;NFE2L1:0.412228353696;LEF1_TCF7_TCF7L1,2:0.406183283921;SOX{8,9,10}:0.399457101636;HOXA9_MEIS1:0.377498526615;XCPE1{core}:0.375888084324;RFX2..5_RFXANK_RFXAP:0.37558813429;MAZ:0.360423233077;SOX17:0.343554928123;OCT4_SOX2{dimer}:0.320145768409;FOXA2:0.311615981736;HIC1:0.311244397757;ATF5_CREB3:0.309247124352;EGR1..3:0.264836372328;MYFfamily:0.230202498436;NKX3-2:0.21060965;MTF1:0.185474895037;HOX{A6,A7,B6,B7}:0.181026612532;HMGA1,2:0.178005403733;GZF1:0.170285944575;PAX1,9:0.158876215684;CREB1:0.142120259107;HOX{A5,B5}:0.137889684188;BPTF:0.121557544351;SP1:0.117917986594;HAND1,2:0.104933643988;PAX6:0.0819093583911;TGIF1:0.0664311707919;NANOG:0.0434935444909;SREBF1,2:0.0218004199312;GCM1,2:0.00620277836421;NR3C1:-0.00346670830734;PPARG:-0.00989205351553;ADNP_IRX_SIX_ZHX:-0.0212532612267;ZNF423:-0.0280501835423;NFIX:-0.0331792180181;NKX2-2,8:-0.0527018155366;GFI1B:-0.0642477434658;NR6A1:-0.0950894659112;HBP1_HMGB_SSRP1_UBTF:-0.0986565548018;HIF1A:-0.112153047587;SOX2:-0.153535235818;HSF1,2:-0.169129054521;HNF1A:-0.201737265528;FOXN1:-0.203431538583;IKZF1:-0.203438675667;SOX5:-0.213370495536;FOXL1:-0.226893637801;XBP1:-0.241524262031;MYBL2:-0.247250314779;HLF:-0.260545448872;EN1,2:-0.261099435975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.264096857558;VSX1,2:-0.268009226872;SNAI1..3:-0.271951057154;ATF2:-0.275539561668;LMO2:-0.309737549885;RORA:-0.329623165236;RXR{A,B,G}:-0.336374138941;STAT5{A,B}:-0.341351196692;CEBPA,B_DDIT3:-0.36862612829;NHLH1,2:-0.376024305682;NFIL3:-0.383928196578;GTF2A1,2:-0.396885977613;ALX4:-0.411076674068;MEF2{A,B,C,D}:-0.421823041544;FOXQ1:-0.429956486167;NANOG{mouse}:-0.4315108919;ZEB1:-0.433650687246;DMAP1_NCOR{1,2}_SMARC:-0.439683370269;GATA6:-0.442590789484;HNF4A_NR2F1,2:-0.474797183945;MYOD1:-0.47659296718;FOSL2:-0.488326129099;JUN:-0.523517776348;FOX{I1,J2}:-0.527884523015;MAFB:-0.571682424711;NFKB1_REL_RELA:-0.581541416043;ATF6:-0.593122604958;SPI1:-0.597648405962;NR5A1,2:-0.599007660391;bHLH_family:-0.604750680671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.621007188636;AR:-0.6230625423;IRF7:-0.628809923876;POU2F1..3:-0.647997364975;IRF1,2:-0.654518984162;FOX{F1,F2,J1}:-0.65667970249;SPIB:-0.697463258238;TEAD1:-0.704662718696;SRF:-0.708022787033;FOS_FOS{B,L1}_JUN{B,D}:-0.725334843798;T:-0.741769616361;RUNX1..3:-0.748032736821;TLX1..3_NFIC{dimer}:-0.787872356219;SMAD1..7,9:-0.795586479042;BACH2:-0.795882782292;TP53:-0.83053265376;ZNF238:-0.854995420348;ELF1,2,4:-0.876237461081;NFE2L2:-0.887732593159;FOX{D1,D2}:-0.888399700454;TFAP2{A,C}:-0.899771141253;RXRA_VDR{dimer}:-0.911367019938;NFATC1..3:-0.949141635333;ESR1:-0.954872627661;NFE2:-0.980203775964;FOXO1,3,4:-0.994353669706;TFAP4:-0.994702458808;TBP:-1.01347696183;TLX2:-1.09847202954;ZNF148:-1.18726990348;ETS1,2:-1.21520282952;STAT2,4,6:-1.22043351943;TFCP2:-1.24399411548;PAX2:-1.26073046047;GLI1..3:-1.30232731491;HES1:-1.35286602091;EP300:-1.40981152803;HMX1:-1.48541983794;TBX4,5:-1.5194940659;EBF1:-1.6140482545;SPZ1:-2.00220964163
|top_motifs=TFDP1:2.68285363043;BREu{core}:2.67183040206;NKX2-1,4:2.4511143936;POU1F1:2.32842384761;AHR_ARNT_ARNT2:2.1430088239;TEF:2.08615662281;RBPJ:2.0792583225;E2F1..5:2.00640563271;POU6F1:1.96068056979;PAX4:1.92147560743;NKX6-1,2:1.73815610782;PAX3,7:1.468556054;POU3F1..4:1.4656915574;DBP:1.46184939271;PITX1..3:1.41028300962;NFY{A,B,C}:1.39591075555;NKX2-3_NKX2-5:1.39303520961;YY1:1.37093849353;ZNF143:1.27509860856;FOXM1:1.24730656156;ZNF384:1.23952110213;EVI1:1.23266702446;PBX1:1.20080792948;NRF1:1.19909799902;ALX1:1.17796488353;MTE{core}:1.1672394774;CDX1,2,4:1.14627928694;ARID5B:1.14556161082;PRRX1,2:1.07759025112;TFAP2B:1.06344874119;CDC5L:1.04476703861;RREB1:1.02640719071;ZFP161:1.02528790606;MED-1{core}:1.010024316;NKX3-1:1.00481834433;AIRE:0.96878645707;CUX2:0.967210934935;PATZ1:0.966048055653;GFI1:0.958135858569;TOPORS:0.950858715773;FOXP1:0.902073250524;POU5F1:0.885075656413;MZF1:0.877556764756;GATA4:0.863230295524;PAX8:0.859756130273;HOX{A4,D4}:0.854232997824;STAT1,3:0.817828510961;CRX:0.777344955227;ZBTB16:0.770786441105;ATF4:0.76872960717;PDX1:0.764317105438;ZBTB6:0.749073679144;NR1H4:0.748199800266;ELK1,4_GABP{A,B1}:0.744190998004;IKZF2:0.736317869477;RFX1:0.721779383918;FOXD3:0.709529257344;ONECUT1,2:0.701803678463;MYB:0.673538446892;ZIC1..3:0.603250294888;FOXP3:0.588611359212;PRDM1:0.576940030369;KLF4:0.574649373104;REST:0.572187364406;UFEwm:0.52867836745;ESRRA:0.522071692449;TAL1_TCF{3,4,12}:0.489610912466;PAX5:0.434462343072;GTF2I:0.419442609511;LHX3,4:0.415408753418;NFE2L1:0.412228353696;LEF1_TCF7_TCF7L1,2:0.406183283921;SOX{8,9,10}:0.399457101636;HOXA9_MEIS1:0.377498526615;XCPE1{core}:0.375888084324;RFX2..5_RFXANK_RFXAP:0.37558813429;MAZ:0.360423233077;SOX17:0.343554928123;OCT4_SOX2{dimer}:0.320145768409;FOXA2:0.311615981736;HIC1:0.311244397757;ATF5_CREB3:0.309247124352;EGR1..3:0.264836372328;MYFfamily:0.230202498436;NKX3-2:0.21060965;MTF1:0.185474895037;HOX{A6,A7,B6,B7}:0.181026612532;HMGA1,2:0.178005403733;GZF1:0.170285944575;PAX1,9:0.158876215684;CREB1:0.142120259107;HOX{A5,B5}:0.137889684188;BPTF:0.121557544351;SP1:0.117917986594;HAND1,2:0.104933643988;PAX6:0.0819093583911;TGIF1:0.0664311707919;NANOG:0.0434935444909;SREBF1,2:0.0218004199312;GCM1,2:0.00620277836421;NR3C1:-0.00346670830734;PPARG:-0.00989205351553;ADNP_IRX_SIX_ZHX:-0.0212532612267;ZNF423:-0.0280501835423;NFIX:-0.0331792180181;NKX2-2,8:-0.0527018155366;GFI1B:-0.0642477434658;NR6A1:-0.0950894659112;HBP1_HMGB_SSRP1_UBTF:-0.0986565548018;HIF1A:-0.112153047587;SOX2:-0.153535235818;HSF1,2:-0.169129054521;HNF1A:-0.201737265528;FOXN1:-0.203431538583;IKZF1:-0.203438675667;SOX5:-0.213370495536;FOXL1:-0.226893637801;XBP1:-0.241524262031;MYBL2:-0.247250314779;HLF:-0.260545448872;EN1,2:-0.261099435975;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.264096857558;VSX1,2:-0.268009226872;SNAI1..3:-0.271951057154;ATF2:-0.275539561668;LMO2:-0.309737549885;RORA:-0.329623165236;RXR{A,B,G}:-0.336374138941;STAT5{A,B}:-0.341351196692;CEBPA,B_DDIT3:-0.36862612829;NHLH1,2:-0.376024305682;NFIL3:-0.383928196578;GTF2A1,2:-0.396885977613;ALX4:-0.411076674068;MEF2{A,B,C,D}:-0.421823041544;FOXQ1:-0.429956486167;NANOG{mouse}:-0.4315108919;ZEB1:-0.433650687246;DMAP1_NCOR{1,2}_SMARC:-0.439683370269;GATA6:-0.442590789484;HNF4A_NR2F1,2:-0.474797183945;MYOD1:-0.47659296718;FOSL2:-0.488326129099;JUN:-0.523517776348;FOX{I1,J2}:-0.527884523015;MAFB:-0.571682424711;NFKB1_REL_RELA:-0.581541416043;ATF6:-0.593122604958;SPI1:-0.597648405962;NR5A1,2:-0.599007660391;bHLH_family:-0.604750680671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.621007188636;AR:-0.6230625423;IRF7:-0.628809923876;POU2F1..3:-0.647997364975;IRF1,2:-0.654518984162;FOX{F1,F2,J1}:-0.65667970249;SPIB:-0.697463258238;TEAD1:-0.704662718696;SRF:-0.708022787033;FOS_FOS{B,L1}_JUN{B,D}:-0.725334843798;T:-0.741769616361;RUNX1..3:-0.748032736821;TLX1..3_NFIC{dimer}:-0.787872356219;SMAD1..7,9:-0.795586479042;BACH2:-0.795882782292;TP53:-0.83053265376;ZNF238:-0.854995420348;ELF1,2,4:-0.876237461081;NFE2L2:-0.887732593159;FOX{D1,D2}:-0.888399700454;TFAP2{A,C}:-0.899771141253;RXRA_VDR{dimer}:-0.911367019938;NFATC1..3:-0.949141635333;ESR1:-0.954872627661;NFE2:-0.980203775964;FOXO1,3,4:-0.994353669706;TFAP4:-0.994702458808;TBP:-1.01347696183;TLX2:-1.09847202954;ZNF148:-1.18726990348;ETS1,2:-1.21520282952;STAT2,4,6:-1.22043351943;TFCP2:-1.24399411548;PAX2:-1.26073046047;GLI1..3:-1.30232731491;HES1:-1.35286602091;EP300:-1.40981152803;HMX1:-1.48541983794;TBX4,5:-1.5194940659;EBF1:-1.6140482545;SPZ1:-2.00220964163
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10642-109A3;search_select_hide=table117:FF:10642-109A3
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:carcinosarcoma cell line:JHUCS-1
Species:Human (Homo sapiens)
Library ID:CNhs11747
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stageNA
sexfemale
age56
cell typeunclassifiable
cell lineJHUCS-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004911
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11747 CAGE DRX007844 DRR008716
Accession ID Hg19

Library idBAMCTSS
CNhs11747 DRZ000141 DRZ001526
Accession ID Hg38

Library idBAMCTSS
CNhs11747 DRZ011491 DRZ012876
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0481
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.298
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.572
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.067
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0196
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0953
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0738
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0267
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0695
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0695
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.558
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.461
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0695
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11747

Jaspar motifP-value
MA0002.21.84688e-6
MA0003.10.127
MA0004.10.968
MA0006.10.284
MA0007.10.594
MA0009.10.604
MA0014.10.794
MA0017.10.0105
MA0018.20.324
MA0019.10.492
MA0024.11.84184e-6
MA0025.10.956
MA0027.10.596
MA0028.10.406
MA0029.10.995
MA0030.10.211
MA0031.10.025
MA0035.20.142
MA0038.10.00301
MA0039.20.365
MA0040.10.183
MA0041.10.331
MA0042.10.422
MA0043.10.718
MA0046.10.0784
MA0047.20.00276
MA0048.10.497
MA0050.11.00426e-4
MA0051.10.0269
MA0052.10.00777
MA0055.10.747
MA0057.10.224
MA0058.10.874
MA0059.10.494
MA0060.19.63325e-9
MA0061.10.0121
MA0062.20.929
MA0065.20.00224
MA0066.10.0352
MA0067.10.92
MA0068.10.932
MA0069.10.944
MA0070.10.0415
MA0071.10.551
MA0072.10.528
MA0073.10.559
MA0074.10.184
MA0076.10.119
MA0077.10.273
MA0078.10.527
MA0079.20.665
MA0080.27.176e-14
MA0081.10.0522
MA0083.10.0631
MA0084.10.337
MA0087.10.124
MA0088.10.815
MA0090.10.0137
MA0091.10.613
MA0092.10.199
MA0093.10.933
MA0099.27.05528e-21
MA0100.10.221
MA0101.10.0714
MA0102.20.01
MA0103.10.256
MA0104.20.682
MA0105.10.00576
MA0106.10.15
MA0107.10.0227
MA0108.20.111
MA0111.10.584
MA0112.27.71818e-5
MA0113.10.0715
MA0114.10.0377
MA0115.10.529
MA0116.10.0122
MA0117.10.815
MA0119.10.0744
MA0122.10.182
MA0124.10.383
MA0125.10.788
MA0131.10.399
MA0135.10.286
MA0136.14.75598e-13
MA0137.20.00888
MA0138.20.94
MA0139.10.0591
MA0140.10.0582
MA0141.10.0466
MA0142.10.578
MA0143.10.438
MA0144.10.00303
MA0145.10.0601
MA0146.10.103
MA0147.10.912
MA0148.10.01
MA0149.10.0213
MA0150.17.92747e-5
MA0152.10.983
MA0153.10.209
MA0154.10.00684
MA0155.10.306
MA0156.11.8093e-5
MA0157.10.0134
MA0159.10.0109
MA0160.10.0869
MA0162.10.227
MA0163.19.09081e-5
MA0164.10.773
MA0258.10.00827
MA0259.10.629



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11747

Novel motifP-value
10.202
100.188
1000.951
1010.889
1020.592
1030.066
1040.357
1050.148
1060.0137
1070.125
1080.593
1090.0314
110.0996
1100.386
1110.833
1120.0482
1130.36
1140.0151
1150.824
1160.626
1170.164
1180.431
1190.167
120.321
1200.309
1210.905
1220.75
1230.695
1240.733
1250.912
1260.172
1270.102
1280.0549
1290.2
130.313
1300.652
1310.277
1320.9
1330.265
1340.62
1350.0691
1360.859
1370.191
1380.334
1390.046
140.529
1400.76
1410.5
1420.557
1430.00381
1440.943
1450.282
1460.785
1470.773
1480.0324
1490.0248
150.169
1500.549
1510.375
1520.0253
1530.799
1540.912
1550.832
1560.784
1570.654
1580.941
1590.017
160.204
1600.272
1610.767
1620.604
1630.929
1640.434
1650.174
1660.825
1670.724
1680.304
1690.0164
170.114
180.433
190.158
20.342
200.78
210.796
220.132
230.00656
240.188
250.45
260.32
270.119
280.927
290.368
30.086
300.466
310.579
320.0331
330.453
340.473
350.46
360.192
370.0331
380.308
390.235
40.937
400.229
410.105
420.295
430.133
440.403
450.373
460.263
470.344
480.288
490.228
50.0841
500.443
510.319
520.288
530.449
540.185
550.0111
560.464
570.578
580.186
590.0317
60.745
600.0598
610.352
620.0553
630.131
640.726
650.137
660.645
670.471
680.789
690.523
70.223
700.024
710.143
720.138
730.0292
740.38
750.0984
760.865
770.0622
780.174
790.324
80.227
800.129
810.577
820.0499
830.0935
840.766
850.00805
860.266
870.391
880.939
890.0899
90.148
900.314
910.16
920.0407
930.761
940.141
950.0702
960.0638
970.784
980.32
990.447



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11747


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1115 (sarcoma)
154 (mixed cell type cancer)
4236 (carcinosarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100400 (sarcoma cell line sample)
0101120 (epithelial cell line sample)
0100197 (carcinosarcoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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