FF:11273-116H4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005625 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005625 | ||
|HumanCAGEScanFiles=NCig10048;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008327;DRR009199;DRZ000624;DRZ002009;DRZ011974;DRZ013359 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037093;DRR041459;DRZ007101 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000088 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11273-116H4 | |id=FF:11273-116H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000088 | ||
|is_obsolete= | |||
|library_id=CNhs11077 | |||
|library_id_phase_based=2:CNhs11077 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11273 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GCCAAT.11273 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11273 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GCCAAT.11273 | |||
|name=Mammary Epithelial Cell, donor1 | |name=Mammary Epithelial Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=NCig10048,,, | |profile_cagescan=NCig10048,,, | ||
|profile_hcage=CNhs11077,LSID724,release008,COMPLETED | |profile_hcage=CNhs11077,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA830-R10a | |rna_catalog_number=CA830-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116H4 | |rna_tube_id=116H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.GCCAAT | |||
|sample_age=29 | |sample_age=29 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.65200815095989e-263!GO:0043226;organelle;6.22890828959197e-210!GO:0043229;intracellular organelle;3.08848571039215e-209!GO:0043231;intracellular membrane-bound organelle;8.2018079792864e-200!GO:0043227;membrane-bound organelle;8.2018079792864e-200!GO:0005737;cytoplasm;5.97892504905854e-188!GO:0044422;organelle part;5.45678106925765e-160!GO:0044446;intracellular organelle part;3.45219319500993e-158!GO:0044444;cytoplasmic part;6.73723093731926e-124!GO:0032991;macromolecular complex;2.77822135909375e-111!GO:0030529;ribonucleoprotein complex;6.63270149411909e-93!GO:0044238;primary metabolic process;1.99728479005911e-90!GO:0005634;nucleus;7.27777080654119e-90!GO:0044237;cellular metabolic process;1.02296288313023e-88!GO:0043170;macromolecule metabolic process;1.06626724369278e-84!GO:0044428;nuclear part;7.24215902208365e-81!GO:0005515;protein binding;1.25679904147738e-79!GO:0043233;organelle lumen;3.07932725879328e-76!GO:0031974;membrane-enclosed lumen;3.07932725879328e-76!GO:0003723;RNA binding;8.97095326708682e-70!GO:0005739;mitochondrion;1.99040654302433e-65!GO:0043234;protein complex;1.09413210298349e-56!GO:0016043;cellular component organization and biogenesis;1.3289478846053e-54!GO:0006396;RNA processing;1.82772311970883e-54!GO:0005840;ribosome;3.9704806611334e-54!GO:0006412;translation;5.85652998698325e-52!GO:0019538;protein metabolic process;1.12206170665773e-51!GO:0043283;biopolymer metabolic process;6.62896664072549e-50!GO:0043228;non-membrane-bound organelle;3.87100564812343e-49!GO:0043232;intracellular non-membrane-bound organelle;3.87100564812343e-49!GO:0031981;nuclear lumen;2.53278801792857e-48!GO:0031090;organelle membrane;4.28209673645123e-48!GO:0003735;structural constituent of ribosome;1.84487915029602e-47!GO:0015031;protein transport;2.70248427559519e-46!GO:0033036;macromolecule localization;4.22493412795067e-46!GO:0044267;cellular protein metabolic process;1.38801015796314e-44!GO:0044260;cellular macromolecule metabolic process;3.97460262067035e-44!GO:0044429;mitochondrial part;2.38196891027466e-43!GO:0045184;establishment of protein localization;7.82677353294771e-43!GO:0008104;protein localization;1.91149958396659e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.06270899911842e-42!GO:0010467;gene expression;3.86965717117066e-42!GO:0009058;biosynthetic process;1.32672278507099e-40!GO:0044249;cellular biosynthetic process;2.05721117870324e-40!GO:0031967;organelle envelope;3.48317022563514e-40!GO:0005829;cytosol;4.01105751675605e-40!GO:0033279;ribosomal subunit;5.3945621888107e-40!GO:0031975;envelope;8.59352142335114e-40!GO:0016071;mRNA metabolic process;1.55273880977076e-39!GO:0006996;organelle organization and biogenesis;3.78151536513113e-39!GO:0046907;intracellular transport;1.16693824837704e-38!GO:0065003;macromolecular complex assembly;1.29407442056611e-38!GO:0008380;RNA splicing;6.52661415639925e-38!GO:0009059;macromolecule biosynthetic process;1.07608290452538e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.79063755164075e-36!GO:0022607;cellular component assembly;5.50887288746805e-35!GO:0006259;DNA metabolic process;1.37369585628199e-34!GO:0006397;mRNA processing;1.6354976907006e-34!GO:0007049;cell cycle;1.47401609006935e-33!GO:0006886;intracellular protein transport;3.88688249201768e-32!GO:0005681;spliceosome;4.77881169307601e-28!GO:0005654;nucleoplasm;7.37876824136059e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.65475850174787e-28!GO:0005740;mitochondrial envelope;3.2219593172435e-27!GO:0022402;cell cycle process;9.5550792585595e-26!GO:0051649;establishment of cellular localization;1.58087633706235e-25!GO:0000166;nucleotide binding;1.99624644882661e-25!GO:0031966;mitochondrial membrane;2.45696510887524e-25!GO:0051641;cellular localization;2.6211447189078e-25!GO:0003676;nucleic acid binding;3.63829576056225e-24!GO:0019866;organelle inner membrane;6.12863503108452e-24!GO:0000278;mitotic cell cycle;9.35607921322446e-24!GO:0044445;cytosolic part;1.33782836919655e-23!GO:0006974;response to DNA damage stimulus;2.06868327080591e-23!GO:0005730;nucleolus;2.28915774874246e-23!GO:0005743;mitochondrial inner membrane;2.50309024152697e-22!GO:0016462;pyrophosphatase activity;6.60483159553333e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.19693450948419e-22!GO:0044451;nucleoplasm part;9.17426995309518e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.16577592371293e-21!GO:0016874;ligase activity;5.81114069355127e-21!GO:0017111;nucleoside-triphosphatase activity;6.13406727999991e-21!GO:0015934;large ribosomal subunit;1.55622862111335e-20!GO:0015935;small ribosomal subunit;2.57339130025882e-20!GO:0006119;oxidative phosphorylation;3.59751825517533e-20!GO:0012505;endomembrane system;4.58190122079926e-20!GO:0000087;M phase of mitotic cell cycle;8.90010710058389e-20!GO:0006457;protein folding;8.95002781684718e-20!GO:0044455;mitochondrial membrane part;1.74729586756602e-19!GO:0006281;DNA repair;2.13504455113458e-19!GO:0007067;mitosis;2.29782230765884e-19!GO:0031980;mitochondrial lumen;3.27645022513215e-19!GO:0005759;mitochondrial matrix;3.27645022513215e-19!GO:0022618;protein-RNA complex assembly;3.88646800281887e-19!GO:0005694;chromosome;4.97023873015314e-19!GO:0016070;RNA metabolic process;1.68422923987239e-18!GO:0032553;ribonucleotide binding;1.79118926665194e-18!GO:0032555;purine ribonucleotide binding;1.79118926665194e-18!GO:0022403;cell cycle phase;2.03084876642547e-18!GO:0017076;purine nucleotide binding;2.90050792005302e-18!GO:0006512;ubiquitin cycle;5.4137140631033e-18!GO:0042254;ribosome biogenesis and assembly;9.68740940863355e-18!GO:0051301;cell division;1.33486167734127e-17!GO:0048770;pigment granule;4.75198771334408e-17!GO:0042470;melanosome;4.75198771334408e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;5.83300788981953e-17!GO:0006511;ubiquitin-dependent protein catabolic process;6.18805019831461e-17!GO:0006605;protein targeting;6.54706036772079e-17!GO:0044427;chromosomal part;6.64517056444103e-17!GO:0019941;modification-dependent protein catabolic process;7.40081011777559e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.40081011777559e-17!GO:0005761;mitochondrial ribosome;1.68801933796487e-16!GO:0000313;organellar ribosome;1.68801933796487e-16!GO:0000279;M phase;1.8179190361033e-16!GO:0044257;cellular protein catabolic process;1.83457654944227e-16!GO:0043285;biopolymer catabolic process;2.79083408794446e-16!GO:0044265;cellular macromolecule catabolic process;2.82097085216681e-16!GO:0009719;response to endogenous stimulus;3.45610988304116e-16!GO:0008135;translation factor activity, nucleic acid binding;5.33117016242572e-16!GO:0005783;endoplasmic reticulum;6.91701531194957e-16!GO:0008134;transcription factor binding;2.08964103907701e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.45750994116673e-15!GO:0005524;ATP binding;3.63616964757713e-15!GO:0051276;chromosome organization and biogenesis;6.96529704971571e-15!GO:0032559;adenyl ribonucleotide binding;9.5069579962395e-15!GO:0005746;mitochondrial respiratory chain;9.50821985917199e-15!GO:0012501;programmed cell death;1.04597654498242e-14!GO:0030163;protein catabolic process;1.09085030253011e-14!GO:0006915;apoptosis;1.8726395118497e-14!GO:0000074;regulation of progression through cell cycle;2.11450966116472e-14!GO:0030554;adenyl nucleotide binding;2.16978528458124e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.27076310729121e-14!GO:0051726;regulation of cell cycle;2.54078944180074e-14!GO:0006260;DNA replication;2.68529977772151e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.94614030750444e-14!GO:0009057;macromolecule catabolic process;3.01558296098102e-14!GO:0005794;Golgi apparatus;3.50714985508773e-14!GO:0051186;cofactor metabolic process;3.5233998986286e-14!GO:0043412;biopolymer modification;3.72042527784496e-14!GO:0044432;endoplasmic reticulum part;3.79453399574213e-14!GO:0005635;nuclear envelope;1.10256918061566e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.19170175210796e-13!GO:0048193;Golgi vesicle transport;1.94703338102173e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.16427952242008e-13!GO:0000375;RNA splicing, via transesterification reactions;2.16427952242008e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.16427952242008e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.94083681266306e-13!GO:0003954;NADH dehydrogenase activity;2.94083681266306e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.94083681266306e-13!GO:0051082;unfolded protein binding;4.08724485440376e-13!GO:0008219;cell death;4.14775800077178e-13!GO:0016265;death;4.14775800077178e-13!GO:0003743;translation initiation factor activity;8.81469924895287e-13!GO:0006399;tRNA metabolic process;1.72522433379964e-12!GO:0031965;nuclear membrane;1.96447356737137e-12!GO:0006464;protein modification process;2.15290829031116e-12!GO:0006461;protein complex assembly;2.31995028194492e-12!GO:0044248;cellular catabolic process;2.42744245249291e-12!GO:0006413;translational initiation;2.71553423034943e-12!GO:0044453;nuclear membrane part;3.81336096736006e-12!GO:0016604;nuclear body;4.121710123093e-12!GO:0006732;coenzyme metabolic process;4.2001942299038e-12!GO:0006913;nucleocytoplasmic transport;5.5410537307936e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.19215748492914e-12!GO:0042773;ATP synthesis coupled electron transport;7.19215748492914e-12!GO:0043687;post-translational protein modification;7.70033540950066e-12!GO:0006364;rRNA processing;8.64444652667687e-12!GO:0016072;rRNA metabolic process;1.28563368382423e-11!GO:0051169;nuclear transport;1.38474843782095e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.60037247311219e-11!GO:0045271;respiratory chain complex I;1.60037247311219e-11!GO:0005747;mitochondrial respiratory chain complex I;1.60037247311219e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;3.11209084850735e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.42984227402404e-11!GO:0006446;regulation of translational initiation;4.50853199091678e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.58300466447944e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.77450306120142e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.94547768709054e-11!GO:0015630;microtubule cytoskeleton;1.01885164285791e-10!GO:0006323;DNA packaging;1.03335275187298e-10!GO:0008639;small protein conjugating enzyme activity;1.04764151709755e-10!GO:0005789;endoplasmic reticulum membrane;1.09188659279113e-10!GO:0008565;protein transporter activity;1.20198468313623e-10!GO:0005643;nuclear pore;1.30672650802996e-10!GO:0016192;vesicle-mediated transport;2.02761598993339e-10!GO:0004842;ubiquitin-protein ligase activity;2.05696063717817e-10!GO:0016887;ATPase activity;2.17118470298212e-10!GO:0065004;protein-DNA complex assembly;2.71835006208152e-10!GO:0016607;nuclear speck;3.13405063841013e-10!GO:0017038;protein import;4.94644187245787e-10!GO:0019787;small conjugating protein ligase activity;6.71903089613157e-10!GO:0042623;ATPase activity, coupled;1.02145623761801e-09!GO:0003712;transcription cofactor activity;1.10733836834791e-09!GO:0009259;ribonucleotide metabolic process;1.25769039963347e-09!GO:0004386;helicase activity;1.36206169096434e-09!GO:0048523;negative regulation of cellular process;1.66421456860333e-09!GO:0005793;ER-Golgi intermediate compartment;1.73549912946395e-09!GO:0006163;purine nucleotide metabolic process;2.27059135258497e-09!GO:0006366;transcription from RNA polymerase II promoter;2.45971094508509e-09!GO:0000785;chromatin;3.33560322853276e-09!GO:0043067;regulation of programmed cell death;3.46379041110738e-09!GO:0042981;regulation of apoptosis;4.5618885394936e-09!GO:0065002;intracellular protein transport across a membrane;4.60845136888088e-09!GO:0016881;acid-amino acid ligase activity;4.9372755347923e-09!GO:0050657;nucleic acid transport;5.20064835242215e-09!GO:0051236;establishment of RNA localization;5.20064835242215e-09!GO:0050658;RNA transport;5.20064835242215e-09!GO:0006403;RNA localization;5.56426176631674e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.65406820745848e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.65406820745848e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.65406820745848e-09!GO:0006333;chromatin assembly or disassembly;6.5038551937164e-09!GO:0043038;amino acid activation;6.5038551937164e-09!GO:0006418;tRNA aminoacylation for protein translation;6.5038551937164e-09!GO:0043039;tRNA aminoacylation;6.5038551937164e-09!GO:0005768;endosome;6.67540342793292e-09!GO:0009150;purine ribonucleotide metabolic process;9.28669868619261e-09!GO:0046930;pore complex;9.44425731550297e-09!GO:0050794;regulation of cellular process;1.20315887133571e-08!GO:0009055;electron carrier activity;1.29127823777923e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.40913458172401e-08!GO:0005819;spindle;1.59572458900955e-08!GO:0006164;purine nucleotide biosynthetic process;1.78364195387502e-08!GO:0003924;GTPase activity;1.83214290976396e-08!GO:0043566;structure-specific DNA binding;1.97085338062019e-08!GO:0009260;ribonucleotide biosynthetic process;2.0129169961093e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01407746684804e-08!GO:0007005;mitochondrion organization and biogenesis;2.76968300293617e-08!GO:0008026;ATP-dependent helicase activity;3.46297981449716e-08!GO:0051188;cofactor biosynthetic process;3.63162698784534e-08!GO:0009141;nucleoside triphosphate metabolic process;3.68967090035454e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.90908363316142e-08!GO:0006334;nucleosome assembly;5.21741291906099e-08!GO:0003697;single-stranded DNA binding;5.36173811910688e-08!GO:0048519;negative regulation of biological process;5.67636546498999e-08!GO:0030120;vesicle coat;5.91109632489482e-08!GO:0030662;coated vesicle membrane;5.91109632489482e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.93839566582436e-08!GO:0032446;protein modification by small protein conjugation;6.19923308879424e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.3291370119705e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.86404089854599e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.22117451889228e-08!GO:0005813;centrosome;7.41393676561153e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.50668855138515e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.50668855138515e-08!GO:0016567;protein ubiquitination;7.62951914608194e-08!GO:0048475;coated membrane;7.88873678219095e-08!GO:0030117;membrane coat;7.88873678219095e-08!GO:0051246;regulation of protein metabolic process;7.94619911198729e-08!GO:0009056;catabolic process;1.09023691604183e-07!GO:0015986;ATP synthesis coupled proton transport;1.1605694289081e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.1605694289081e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.3150923319151e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.3150923319151e-07!GO:0043069;negative regulation of programmed cell death;1.57193003678119e-07!GO:0031497;chromatin assembly;1.68479885577577e-07!GO:0005815;microtubule organizing center;2.31394605637717e-07!GO:0016779;nucleotidyltransferase activity;2.50549135445192e-07!GO:0006916;anti-apoptosis;2.5160002899814e-07!GO:0009060;aerobic respiration;2.54572621080122e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.59911769858012e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.59911769858012e-07!GO:0051028;mRNA transport;2.97487919294571e-07!GO:0000775;chromosome, pericentric region;4.05217620077363e-07!GO:0043066;negative regulation of apoptosis;4.22099075300703e-07!GO:0006752;group transfer coenzyme metabolic process;4.94445043667319e-07!GO:0046034;ATP metabolic process;4.95241020918689e-07!GO:0051170;nuclear import;5.22588592389617e-07!GO:0009108;coenzyme biosynthetic process;5.93561696341892e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.97253490734676e-07!GO:0005525;GTP binding;6.30707946609036e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.48887672125695e-07!GO:0043623;cellular protein complex assembly;8.46461923611635e-07!GO:0045333;cellular respiration;8.46461923611635e-07!GO:0006606;protein import into nucleus;1.0626748273114e-06!GO:0019829;cation-transporting ATPase activity;1.15390626012372e-06!GO:0006754;ATP biosynthetic process;1.5207132803779e-06!GO:0006753;nucleoside phosphate metabolic process;1.5207132803779e-06!GO:0016740;transferase activity;1.6073152215314e-06!GO:0007051;spindle organization and biogenesis;1.66680143108143e-06!GO:0044431;Golgi apparatus part;2.19249116218122e-06!GO:0031252;leading edge;2.19249116218122e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.86052362543211e-06!GO:0000245;spliceosome assembly;2.91110781349063e-06!GO:0006099;tricarboxylic acid cycle;3.18236697808482e-06!GO:0046356;acetyl-CoA catabolic process;3.18236697808482e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.19781972441848e-06!GO:0045259;proton-transporting ATP synthase complex;3.22075818777276e-06!GO:0000075;cell cycle checkpoint;3.40507461125874e-06!GO:0016787;hydrolase activity;4.12094798310179e-06!GO:0006613;cotranslational protein targeting to membrane;4.18337251917895e-06!GO:0006261;DNA-dependent DNA replication;4.75822389485532e-06!GO:0009109;coenzyme catabolic process;4.89641490296556e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.95044405836048e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.04133193647279e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.52917641581944e-06!GO:0044440;endosomal part;5.68315625127449e-06!GO:0010008;endosome membrane;5.68315625127449e-06!GO:0006793;phosphorus metabolic process;6.19545675061944e-06!GO:0006796;phosphate metabolic process;6.19545675061944e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.28831230691414e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.87452519689384e-06!GO:0031324;negative regulation of cellular metabolic process;7.38548502789049e-06!GO:0016568;chromatin modification;7.75023488804562e-06!GO:0008654;phospholipid biosynthetic process;8.45558047027235e-06!GO:0006084;acetyl-CoA metabolic process;9.21880122202099e-06!GO:0045786;negative regulation of progression through cell cycle;9.85816109207977e-06!GO:0009117;nucleotide metabolic process;1.0353812543065e-05!GO:0003714;transcription corepressor activity;1.04605680740371e-05!GO:0016564;transcription repressor activity;1.06231687777858e-05!GO:0005667;transcription factor complex;1.35900359641238e-05!GO:0032561;guanyl ribonucleotide binding;1.37016905162606e-05!GO:0019001;guanyl nucleotide binding;1.37016905162606e-05!GO:0051187;cofactor catabolic process;1.39517771650737e-05!GO:0000314;organellar small ribosomal subunit;1.39658286584581e-05!GO:0005763;mitochondrial small ribosomal subunit;1.39658286584581e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.48371016310062e-05!GO:0005762;mitochondrial large ribosomal subunit;1.76009171247506e-05!GO:0000315;organellar large ribosomal subunit;1.76009171247506e-05!GO:0051329;interphase of mitotic cell cycle;1.78783141231582e-05!GO:0005770;late endosome;1.84891777682504e-05!GO:0005798;Golgi-associated vesicle;1.98366724587232e-05!GO:0003899;DNA-directed RNA polymerase activity;2.02187212223454e-05!GO:0048522;positive regulation of cellular process;2.08519980069363e-05!GO:0007010;cytoskeleton organization and biogenesis;2.15888695068189e-05!GO:0050789;regulation of biological process;2.32313135154426e-05!GO:0007088;regulation of mitosis;2.56111150047011e-05!GO:0051325;interphase;2.64978651376225e-05!GO:0004298;threonine endopeptidase activity;2.7450818153751e-05!GO:0051427;hormone receptor binding;2.85658671063917e-05!GO:0000151;ubiquitin ligase complex;3.40000464154712e-05!GO:0016563;transcription activator activity;3.40000464154712e-05!GO:0003690;double-stranded DNA binding;3.47334317474665e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.82449387652627e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.1369562281806e-05!GO:0043021;ribonucleoprotein binding;4.25632823545791e-05!GO:0016859;cis-trans isomerase activity;4.32437839525522e-05!GO:0019867;outer membrane;4.72748227648486e-05!GO:0009892;negative regulation of metabolic process;4.73884854977542e-05!GO:0003724;RNA helicase activity;4.83049108582147e-05!GO:0031988;membrane-bound vesicle;5.24042121316112e-05!GO:0031968;organelle outer membrane;5.65571524354779e-05!GO:0008033;tRNA processing;5.75463302079104e-05!GO:0035257;nuclear hormone receptor binding;6.03224997738487e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.3632350272438e-05!GO:0044452;nucleolar part;7.39540437955265e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.8321903758617e-05!GO:0000139;Golgi membrane;7.88020106429649e-05!GO:0019899;enzyme binding;7.88087500206697e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.01641057953495e-05!GO:0016853;isomerase activity;8.45706740633563e-05!GO:0045454;cell redox homeostasis;8.45940077039209e-05!GO:0042802;identical protein binding;8.55450568416986e-05!GO:0016310;phosphorylation;0.000101140212057459!GO:0016363;nuclear matrix;0.000103297525081735!GO:0030867;rough endoplasmic reticulum membrane;0.000105762210473229!GO:0000776;kinetochore;0.000107990812041298!GO:0006302;double-strand break repair;0.000108371700089523!GO:0051252;regulation of RNA metabolic process;0.000116976733972225!GO:0005769;early endosome;0.000118171186833049!GO:0005788;endoplasmic reticulum lumen;0.000121135651020235!GO:0000786;nucleosome;0.000139563571266108!GO:0005741;mitochondrial outer membrane;0.000141305126849676!GO:0048471;perinuclear region of cytoplasm;0.000144200116482867!GO:0003684;damaged DNA binding;0.000158809454690586!GO:0006612;protein targeting to membrane;0.00016289594683632!GO:0065009;regulation of a molecular function;0.00016289729131219!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00016709336116568!GO:0005657;replication fork;0.000171809958854269!GO:0051168;nuclear export;0.000173362406349047!GO:0003713;transcription coactivator activity;0.000179680913103571!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000231131972698421!GO:0006839;mitochondrial transport;0.000238990618866853!GO:0046489;phosphoinositide biosynthetic process;0.00026293750761119!GO:0016491;oxidoreductase activity;0.000271726576872276!GO:0016481;negative regulation of transcription;0.000281063573564334!GO:0001726;ruffle;0.000292003838712327!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000311898845534392!GO:0007006;mitochondrial membrane organization and biogenesis;0.000346711053386546!GO:0031982;vesicle;0.000353428781988736!GO:0046474;glycerophospholipid biosynthetic process;0.000365001376339477!GO:0005773;vacuole;0.000370175030507587!GO:0006626;protein targeting to mitochondrion;0.000370175030507587!GO:0006950;response to stress;0.000417497782100964!GO:0005874;microtubule;0.000430733736127335!GO:0007059;chromosome segregation;0.000444885627059793!GO:0005885;Arp2/3 protein complex;0.00048091104590174!GO:0008250;oligosaccharyl transferase complex;0.000485384965255547!GO:0051052;regulation of DNA metabolic process;0.000485384965255547!GO:0031072;heat shock protein binding;0.000486535098952547!GO:0005048;signal sequence binding;0.00051294285739078!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00051294285739078!GO:0004576;oligosaccharyl transferase activity;0.000568940576241223!GO:0043681;protein import into mitochondrion;0.000589210239431326!GO:0019222;regulation of metabolic process;0.00059463220246839!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00062995478978115!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000636606943095037!GO:0007052;mitotic spindle organization and biogenesis;0.000656836560391114!GO:0031410;cytoplasmic vesicle;0.000687009113254354!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000717339206308922!GO:0000049;tRNA binding;0.000737553804289927!GO:0006383;transcription from RNA polymerase III promoter;0.000741228257265603!GO:0033116;ER-Golgi intermediate compartment membrane;0.000800433603714408!GO:0030036;actin cytoskeleton organization and biogenesis;0.00082781845116212!GO:0000059;protein import into nucleus, docking;0.00086904152204237!GO:0006289;nucleotide-excision repair;0.000902971694619096!GO:0003729;mRNA binding;0.000925623114224356!GO:0048500;signal recognition particle;0.000973644561614777!GO:0006310;DNA recombination;0.00102894798762576!GO:0008094;DNA-dependent ATPase activity;0.00107118263953879!GO:0006402;mRNA catabolic process;0.00107162045433781!GO:0000323;lytic vacuole;0.00107734643721774!GO:0005764;lysosome;0.00107734643721774!GO:0030118;clathrin coat;0.00109640110514397!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00109966664913564!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00109966664913564!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00109966664913564!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00112016807829464!GO:0007050;cell cycle arrest;0.00112016807829464!GO:0009967;positive regulation of signal transduction;0.00112016807829464!GO:0008186;RNA-dependent ATPase activity;0.00119903158996695!GO:0007093;mitotic cell cycle checkpoint;0.0013147050759068!GO:0051920;peroxiredoxin activity;0.00132256268049694!GO:0030663;COPI coated vesicle membrane;0.00139515244608796!GO:0030126;COPI vesicle coat;0.00139515244608796!GO:0018196;peptidyl-asparagine modification;0.00139515244608796!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00139515244608796!GO:0005905;coated pit;0.00140381475919589!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00142061289907102!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00145429783502905!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00145447125267974!GO:0007017;microtubule-based process;0.00145660093710525!GO:0030132;clathrin coat of coated pit;0.00148732946385888!GO:0006414;translational elongation;0.00153674789350011!GO:0048518;positive regulation of biological process;0.00159029778870519!GO:0008312;7S RNA binding;0.00160835129960969!GO:0008168;methyltransferase activity;0.00160835129960969!GO:0006352;transcription initiation;0.00166124143104527!GO:0043488;regulation of mRNA stability;0.00167514364545084!GO:0043487;regulation of RNA stability;0.00167514364545084!GO:0005856;cytoskeleton;0.00167514364545084!GO:0016741;transferase activity, transferring one-carbon groups;0.00168907467570817!GO:0046467;membrane lipid biosynthetic process;0.00169310155912568!GO:0015631;tubulin binding;0.00172624885873448!GO:0016197;endosome transport;0.00178785704985701!GO:0030658;transport vesicle membrane;0.00180215778524843!GO:0008092;cytoskeletal protein binding;0.00182262522930178!GO:0005876;spindle microtubule;0.00194868921899714!GO:0007243;protein kinase cascade;0.00201238326838725!GO:0030521;androgen receptor signaling pathway;0.00237100937279961!GO:0051540;metal cluster binding;0.00244392250344746!GO:0051536;iron-sulfur cluster binding;0.00244392250344746!GO:0004674;protein serine/threonine kinase activity;0.00248618506304736!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00250352574853783!GO:0045047;protein targeting to ER;0.00250352574853783!GO:0015980;energy derivation by oxidation of organic compounds;0.00251940421400016!GO:0030384;phosphoinositide metabolic process;0.00261092689394527!GO:0019843;rRNA binding;0.00261268291819775!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00266539419970113!GO:0004004;ATP-dependent RNA helicase activity;0.00266789630101293!GO:0042770;DNA damage response, signal transduction;0.00270158444019296!GO:0008139;nuclear localization sequence binding;0.0027612617682809!GO:0030133;transport vesicle;0.0029260840538944!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00295267414006561!GO:0006401;RNA catabolic process;0.00297389517238606!GO:0030119;AP-type membrane coat adaptor complex;0.00297389517238606!GO:0016251;general RNA polymerase II transcription factor activity;0.00301541655777429!GO:0048468;cell development;0.003060795201755!GO:0050662;coenzyme binding;0.00307873642800992!GO:0003682;chromatin binding;0.00313359793904039!GO:0006650;glycerophospholipid metabolic process;0.00314251530681477!GO:0004518;nuclease activity;0.00315336562758258!GO:0008361;regulation of cell size;0.00321446541101898!GO:0004527;exonuclease activity;0.00321952075907846!GO:0030031;cell projection biogenesis;0.00342805154738963!GO:0030880;RNA polymerase complex;0.00353858363038392!GO:0035258;steroid hormone receptor binding;0.00364836345930946!GO:0050790;regulation of catalytic activity;0.00367856733774449!GO:0006506;GPI anchor biosynthetic process;0.00368925003765057!GO:0043624;cellular protein complex disassembly;0.00368925003765057!GO:0006891;intra-Golgi vesicle-mediated transport;0.00372734383649705!GO:0043065;positive regulation of apoptosis;0.0037970144551955!GO:0016044;membrane organization and biogenesis;0.00382413360789785!GO:0003711;transcription elongation regulator activity;0.00382656659881685!GO:0016126;sterol biosynthetic process;0.00390065556766456!GO:0032984;macromolecular complex disassembly;0.00395318183301353!GO:0030137;COPI-coated vesicle;0.00395936361290021!GO:0030176;integral to endoplasmic reticulum membrane;0.00402075523947628!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00409078466087941!GO:0009116;nucleoside metabolic process;0.00409250365348815!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00432031489420043!GO:0030660;Golgi-associated vesicle membrane;0.00433514195235975!GO:0051789;response to protein stimulus;0.00436702470715726!GO:0006986;response to unfolded protein;0.00436702470715726!GO:0051098;regulation of binding;0.00451428615963284!GO:0030029;actin filament-based process;0.00464159796506514!GO:0016049;cell growth;0.00464466062898045!GO:0043068;positive regulation of programmed cell death;0.00465860228810588!GO:0005684;U2-dependent spliceosome;0.00490130463252878!GO:0051128;regulation of cellular component organization and biogenesis;0.00505834664324201!GO:0051087;chaperone binding;0.00506594764431418!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00511245788091526!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00511245788091526!GO:0009112;nucleobase metabolic process;0.00511859006754674!GO:0030027;lamellipodium;0.00518622132193712!GO:0030131;clathrin adaptor complex;0.00519585219041013!GO:0008632;apoptotic program;0.00521848569630106!GO:0006505;GPI anchor metabolic process;0.00528430401022815!GO:0016272;prefoldin complex;0.00531966164693661!GO:0051338;regulation of transferase activity;0.00558072791221004!GO:0009165;nucleotide biosynthetic process;0.00561442379982887!GO:0045893;positive regulation of transcription, DNA-dependent;0.00573995052032774!GO:0001558;regulation of cell growth;0.00608870901900919!GO:0000082;G1/S transition of mitotic cell cycle;0.00613274240836007!GO:0006611;protein export from nucleus;0.0061427102313349!GO:0043022;ribosome binding;0.00632565012152205!GO:0032200;telomere organization and biogenesis;0.00634432896386833!GO:0000723;telomere maintenance;0.00634432896386833!GO:0008022;protein C-terminus binding;0.00641699512964036!GO:0043241;protein complex disassembly;0.00648235189881554!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0065061458897025!GO:0000428;DNA-directed RNA polymerase complex;0.0065061458897025!GO:0006144;purine base metabolic process;0.00698644479767978!GO:0006497;protein amino acid lipidation;0.00698730581396251!GO:0030032;lamellipodium biogenesis;0.00698730581396251!GO:0046483;heterocycle metabolic process;0.00702489022227213!GO:0017166;vinculin binding;0.00751449668184375!GO:0030125;clathrin vesicle coat;0.00755501253858477!GO:0030665;clathrin coated vesicle membrane;0.00755501253858477!GO:0045941;positive regulation of transcription;0.00757635715809445!GO:0006695;cholesterol biosynthetic process;0.00759764754885782!GO:0065007;biological regulation;0.00766107567311807!GO:0008610;lipid biosynthetic process;0.00783628480561212!GO:0030134;ER to Golgi transport vesicle;0.00813938050265568!GO:0006405;RNA export from nucleus;0.00820041346710981!GO:0006091;generation of precursor metabolites and energy;0.00821475673474713!GO:0048487;beta-tubulin binding;0.00835522318297019!GO:0005791;rough endoplasmic reticulum;0.00848169565028313!GO:0048037;cofactor binding;0.00861925943893402!GO:0016408;C-acyltransferase activity;0.00870838417058596!GO:0007264;small GTPase mediated signal transduction;0.00888854555743687!GO:0003678;DNA helicase activity;0.00908882223640137!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00911776546736469!GO:0000922;spindle pole;0.00986194390536408!GO:0008180;signalosome;0.0100948479625023!GO:0030503;regulation of cell redox homeostasis;0.0102653634252792!GO:0006275;regulation of DNA replication;0.0104245131222969!GO:0046983;protein dimerization activity;0.0104397073821823!GO:0030127;COPII vesicle coat;0.0104636505880473!GO:0012507;ER to Golgi transport vesicle membrane;0.0104636505880473!GO:0030518;steroid hormone receptor signaling pathway;0.0105437977916951!GO:0051101;regulation of DNA binding;0.0109031663116563!GO:0005832;chaperonin-containing T-complex;0.0109510736601406!GO:0051287;NAD binding;0.0109563088459089!GO:0031529;ruffle organization and biogenesis;0.0113693305042036!GO:0043549;regulation of kinase activity;0.0115318658714763!GO:0006354;RNA elongation;0.0115401818111184!GO:0007004;telomere maintenance via telomerase;0.0115603345908826!GO:0005869;dynactin complex;0.0115727908736829!GO:0006509;membrane protein ectodomain proteolysis;0.0116229249652434!GO:0033619;membrane protein proteolysis;0.0116229249652434!GO:0045892;negative regulation of transcription, DNA-dependent;0.0124656888013676!GO:0000178;exosome (RNase complex);0.0126736130875751!GO:0000086;G2/M transition of mitotic cell cycle;0.0128468871393464!GO:0000096;sulfur amino acid metabolic process;0.0135261935580648!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0136609495048114!GO:0000781;chromosome, telomeric region;0.0140677312865944!GO:0000339;RNA cap binding;0.0145006254905513!GO:0003746;translation elongation factor activity;0.0145006254905513!GO:0006892;post-Golgi vesicle-mediated transport;0.0149346069193213!GO:0030833;regulation of actin filament polymerization;0.0150260756678896!GO:0019752;carboxylic acid metabolic process;0.0150624969847503!GO:0031124;mRNA 3'-end processing;0.0151234722020868!GO:0005669;transcription factor TFIID complex;0.0151786785225841!GO:0006284;base-excision repair;0.0152104690686654!GO:0051539;4 iron, 4 sulfur cluster binding;0.0152527625556995!GO:0050681;androgen receptor binding;0.0152807551241545!GO:0048146;positive regulation of fibroblast proliferation;0.015295335607729!GO:0042158;lipoprotein biosynthetic process;0.0156594680418257!GO:0032508;DNA duplex unwinding;0.0156594680418257!GO:0032392;DNA geometric change;0.0156594680418257!GO:0030041;actin filament polymerization;0.0157103539274508!GO:0005637;nuclear inner membrane;0.0157411977243482!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0158001009628908!GO:0015399;primary active transmembrane transporter activity;0.0158001009628908!GO:0016584;nucleosome positioning;0.0158001009628908!GO:0031570;DNA integrity checkpoint;0.0158895860237175!GO:0046822;regulation of nucleocytoplasmic transport;0.0163516172119496!GO:0006595;polyamine metabolic process;0.0163516172119496!GO:0048144;fibroblast proliferation;0.0164429388865548!GO:0048145;regulation of fibroblast proliferation;0.0164429388865548!GO:0033673;negative regulation of kinase activity;0.0164618503846598!GO:0006469;negative regulation of protein kinase activity;0.0164618503846598!GO:0000910;cytokinesis;0.0164859665929566!GO:0000228;nuclear chromosome;0.0166855466975467!GO:0006984;ER-nuclear signaling pathway;0.0170048287430087!GO:0016311;dephosphorylation;0.0173511385583795!GO:0006082;organic acid metabolic process;0.0176824252464647!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0176833313986683!GO:0046982;protein heterodimerization activity;0.0178398020227342!GO:0031902;late endosome membrane;0.0183108501890423!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0183389591759289!GO:0005758;mitochondrial intermembrane space;0.0184286478925095!GO:0000287;magnesium ion binding;0.0184827350592172!GO:0005862;muscle thin filament tropomyosin;0.0187647160177759!GO:0000209;protein polyubiquitination;0.0188474176037815!GO:0006979;response to oxidative stress;0.0188555166122068!GO:0008637;apoptotic mitochondrial changes;0.0189887061624805!GO:0006417;regulation of translation;0.0190933551951918!GO:0008234;cysteine-type peptidase activity;0.0198893172069425!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0204879678812204!GO:0004532;exoribonuclease activity;0.0207282913300342!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0207282913300342!GO:0000725;recombinational repair;0.0208559995382146!GO:0000724;double-strand break repair via homologous recombination;0.0208559995382146!GO:0006730;one-carbon compound metabolic process;0.0215590487114728!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0218702449469894!GO:0045859;regulation of protein kinase activity;0.0220718931365583!GO:0051348;negative regulation of transferase activity;0.0232726416437217!GO:0045045;secretory pathway;0.0233962394488223!GO:0031901;early endosome membrane;0.0235404620970009!GO:0006268;DNA unwinding during replication;0.0238022718186318!GO:0051537;2 iron, 2 sulfur cluster binding;0.0241519305820821!GO:0006376;mRNA splice site selection;0.0241812965911258!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0241812965911258!GO:0008652;amino acid biosynthetic process;0.0244761744128091!GO:0000792;heterochromatin;0.0244823172540807!GO:0022890;inorganic cation transmembrane transporter activity;0.0245500585987062!GO:0009451;RNA modification;0.0247610837029919!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0254198017707964!GO:0008408;3'-5' exonuclease activity;0.0255676351229197!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0257087758865907!GO:0031323;regulation of cellular metabolic process;0.026202688735892!GO:0030659;cytoplasmic vesicle membrane;0.0263969050800381!GO:0042393;histone binding;0.0264874835360096!GO:0008629;induction of apoptosis by intracellular signals;0.0265030950001246!GO:0040008;regulation of growth;0.0272002586145098!GO:0006643;membrane lipid metabolic process;0.0272002586145098!GO:0008017;microtubule binding;0.0275876887411885!GO:0022411;cellular component disassembly;0.0281410018582163!GO:0007034;vacuolar transport;0.0288488928223564!GO:0031970;organelle envelope lumen;0.0296195899370533!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0296755650415294!GO:0012506;vesicle membrane;0.0300793073780961!GO:0016407;acetyltransferase activity;0.0304386153767197!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0304386153767197!GO:0006400;tRNA modification;0.0312870133128039!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0313805025219572!GO:0006520;amino acid metabolic process;0.0324831308063189!GO:0008243;plasminogen activator activity;0.0329609748128533!GO:0006220;pyrimidine nucleotide metabolic process;0.0330185162751016!GO:0046966;thyroid hormone receptor binding;0.033318777425252!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.033566494134432!GO:0015992;proton transport;0.0340076508831007!GO:0017134;fibroblast growth factor binding;0.0340076508831007!GO:0008426;protein kinase C inhibitor activity;0.0340262755458659!GO:0044433;cytoplasmic vesicle part;0.034131434017253!GO:0009303;rRNA transcription;0.0341416807244238!GO:0008097;5S rRNA binding;0.034967487537592!GO:0000077;DNA damage checkpoint;0.0350149972318899!GO:0005774;vacuolar membrane;0.0352497682277278!GO:0007021;tubulin folding;0.0355974163375843!GO:0004722;protein serine/threonine phosphatase activity;0.0357643801812739!GO:0016791;phosphoric monoester hydrolase activity;0.0361855069826895!GO:0046112;nucleobase biosynthetic process;0.0363154698142224!GO:0006607;NLS-bearing substrate import into nucleus;0.0365082575232347!GO:0031371;ubiquitin conjugating enzyme complex;0.0366512240157371!GO:0008538;proteasome activator activity;0.0366860406323044!GO:0031123;RNA 3'-end processing;0.037132926520715!GO:0022406;membrane docking;0.037132926520715!GO:0048278;vesicle docking;0.037132926520715!GO:0004214;dipeptidyl-peptidase I activity;0.0374082374190024!GO:0006818;hydrogen transport;0.0374082374190024!GO:0032507;maintenance of cellular protein localization;0.0380928265036478!GO:0030522;intracellular receptor-mediated signaling pathway;0.0381193949032685!GO:0051059;NF-kappaB binding;0.0389138989543026!GO:0019206;nucleoside kinase activity;0.039017778844083!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.03915120519124!GO:0015002;heme-copper terminal oxidase activity;0.03915120519124!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.03915120519124!GO:0004129;cytochrome-c oxidase activity;0.03915120519124!GO:0005784;translocon complex;0.0394474569109076!GO:0031326;regulation of cellular biosynthetic process;0.0394514225260392!GO:0045792;negative regulation of cell size;0.0399649632386458!GO:0051270;regulation of cell motility;0.0403506610388557!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0407260693597019!GO:0045210;FasL biosynthetic process;0.0408268433564294!GO:0030508;thiol-disulfide exchange intermediate activity;0.0408268433564294!GO:0004680;casein kinase activity;0.0415005727125817!GO:0043414;biopolymer methylation;0.0417239647440565!GO:0030308;negative regulation of cell growth;0.0425187682100544!GO:0051272;positive regulation of cell motility;0.0427203290488393!GO:0040017;positive regulation of locomotion;0.0427203290488393!GO:0005881;cytoplasmic microtubule;0.0428130733815696!GO:0005850;eukaryotic translation initiation factor 2 complex;0.043090906943861!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0432867777542746!GO:0030911;TPR domain binding;0.0437880829637539!GO:0000819;sister chromatid segregation;0.0438725235032709!GO:0008320;protein transmembrane transporter activity;0.0441571537735064!GO:0000152;nuclear ubiquitin ligase complex;0.0442255793932202!GO:0046128;purine ribonucleoside metabolic process;0.0442255793932202!GO:0042278;purine nucleoside metabolic process;0.0442255793932202!GO:0035035;histone acetyltransferase binding;0.0442255793932202!GO:0009889;regulation of biosynthetic process;0.0447015410183181!GO:0001836;release of cytochrome c from mitochondria;0.0451392645041986!GO:0051881;regulation of mitochondrial membrane potential;0.0455506922835498!GO:0045334;clathrin-coated endocytic vesicle;0.0455506922835498!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0455980791677847!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0455980791677847!GO:0006350;transcription;0.0460516289541837!GO:0022408;negative regulation of cell-cell adhesion;0.0463328833502488!GO:0006378;mRNA polyadenylation;0.0467587577553185!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0471338471394986!GO:0033043;regulation of organelle organization and biogenesis;0.0471338471394986!GO:0008283;cell proliferation;0.0473198135411553!GO:0045926;negative regulation of growth;0.0475473237012931!GO:0004239;methionyl aminopeptidase activity;0.0475984972974589!GO:0006007;glucose catabolic process;0.0478299675229684!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0478418314191867!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0478767625172633!GO:0010257;NADH dehydrogenase complex assembly;0.0478767625172633!GO:0033108;mitochondrial respiratory chain complex assembly;0.0478767625172633!GO:0032259;methylation;0.0485353358772127!GO:0031625;ubiquitin protein ligase binding;0.0485793905424763!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0485793905424763!GO:0043596;nuclear replication fork;0.0486732373206137!GO:0008536;Ran GTPase binding;0.0492092789790554!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0492437319875513 | |||
|sample_id=11273 | |sample_id=11273 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365 | |top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11273-116H4;search_select_hide=table117:FF:11273-116H4 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Mammary Epithelial Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11077 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11077
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11077
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.733 |
| 10 | 10 | 0.689 |
| 100 | 100 | 0.593 |
| 101 | 101 | 0.177 |
| 102 | 102 | 0.303 |
| 103 | 103 | 0.199 |
| 104 | 104 | 0.69 |
| 105 | 105 | 0.993 |
| 106 | 106 | 0.437 |
| 107 | 107 | 0.311 |
| 108 | 108 | 0.834 |
| 109 | 109 | 0.00965 |
| 11 | 11 | 0.904 |
| 110 | 110 | 0.177 |
| 111 | 111 | 0.131 |
| 112 | 112 | 0.846 |
| 113 | 113 | 0.0487 |
| 114 | 114 | 0.908 |
| 115 | 115 | 0.73 |
| 116 | 116 | 0.645 |
| 117 | 117 | 0.356 |
| 118 | 118 | 0.811 |
| 119 | 119 | 0.45 |
| 12 | 12 | 0.422 |
| 120 | 120 | 0.0509 |
| 121 | 121 | 0.432 |
| 122 | 122 | 0.506 |
| 123 | 123 | 0.397 |
| 124 | 124 | 0.0155 |
| 125 | 125 | 0.374 |
| 126 | 126 | 0.624 |
| 127 | 127 | 0.456 |
| 128 | 128 | 0.134 |
| 129 | 129 | 0.405 |
| 13 | 13 | 0.0418 |
| 130 | 130 | 0.668 |
| 131 | 131 | 0.19 |
| 132 | 132 | 0.269 |
| 133 | 133 | 0.139 |
| 134 | 134 | 0.209 |
| 135 | 135 | 0.171 |
| 136 | 136 | 0.0104 |
| 137 | 137 | 0.0958 |
| 138 | 138 | 0.446 |
| 139 | 139 | 0.0842 |
| 14 | 14 | 0.438 |
| 140 | 140 | 0.77 |
| 141 | 141 | 0.188 |
| 142 | 142 | 0.263 |
| 143 | 143 | 0.389 |
| 144 | 144 | 0.152 |
| 145 | 145 | 0.897 |
| 146 | 146 | 0.415 |
| 147 | 147 | 0.663 |
| 148 | 148 | 0.218 |
| 149 | 149 | 0.227 |
| 15 | 15 | 0.891 |
| 150 | 150 | 0.262 |
| 151 | 151 | 0.922 |
| 152 | 152 | 0.21 |
| 153 | 153 | 0.252 |
| 154 | 154 | 0.747 |
| 155 | 155 | 0.913 |
| 156 | 156 | 0.632 |
| 157 | 157 | 0.349 |
| 158 | 158 | 0.0446 |
| 159 | 159 | 0.358 |
| 16 | 16 | 0.0508 |
| 160 | 160 | 0.907 |
| 161 | 161 | 0.981 |
| 162 | 162 | 0.45 |
| 163 | 163 | 0.371 |
| 164 | 164 | 0.0945 |
| 165 | 165 | 0.0762 |
| 166 | 166 | 0.356 |
| 167 | 167 | 0.987 |
| 168 | 168 | 0.543 |
| 169 | 169 | 0.337 |
| 17 | 17 | 0.349 |
| 18 | 18 | 0.521 |
| 19 | 19 | 0.566 |
| 2 | 2 | 0.881 |
| 20 | 20 | 0.0727 |
| 21 | 21 | 0.574 |
| 22 | 22 | 0.627 |
| 23 | 23 | 0.887 |
| 24 | 24 | 0.0121 |
| 25 | 25 | 0.675 |
| 26 | 26 | 0.973 |
| 27 | 27 | 0.209 |
| 28 | 28 | 0.122 |
| 29 | 29 | 0.489 |
| 3 | 3 | 0.787 |
| 30 | 30 | 0.307 |
| 31 | 31 | 0.643 |
| 32 | 32 | 0.124 |
| 33 | 33 | 0.0396 |
| 34 | 34 | 0.0284 |
| 35 | 35 | 0.053 |
| 36 | 36 | 0.602 |
| 37 | 37 | 0.527 |
| 38 | 38 | 0.968 |
| 39 | 39 | 0.484 |
| 4 | 4 | 0.462 |
| 40 | 40 | 0.66 |
| 41 | 41 | 0.135 |
| 42 | 42 | 0.673 |
| 43 | 43 | 0.588 |
| 44 | 44 | 0.894 |
| 45 | 45 | 0.698 |
| 46 | 46 | 0.594 |
| 47 | 47 | 0.599 |
| 48 | 48 | 0.189 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.561 |
| 50 | 50 | 0.315 |
| 51 | 51 | 0.385 |
| 52 | 52 | 0.753 |
| 53 | 53 | 0.138 |
| 54 | 54 | 0.72 |
| 55 | 55 | 0.321 |
| 56 | 56 | 0.906 |
| 57 | 57 | 0.24 |
| 58 | 58 | 0.825 |
| 59 | 59 | 0.257 |
| 6 | 6 | 0.978 |
| 60 | 60 | 0.653 |
| 61 | 61 | 0.621 |
| 62 | 62 | 0.517 |
| 63 | 63 | 0.352 |
| 64 | 64 | 0.694 |
| 65 | 65 | 0.255 |
| 66 | 66 | 0.139 |
| 67 | 67 | 0.946 |
| 68 | 68 | 0.135 |
| 69 | 69 | 0.657 |
| 7 | 7 | 0.949 |
| 70 | 70 | 0.0893 |
| 71 | 71 | 0.45 |
| 72 | 72 | 0.904 |
| 73 | 73 | 0.0326 |
| 74 | 74 | 0.872 |
| 75 | 75 | 0.0889 |
| 76 | 76 | 0.385 |
| 77 | 77 | 0.758 |
| 78 | 78 | 0.0428 |
| 79 | 79 | 0.109 |
| 8 | 8 | 0.763 |
| 80 | 80 | 0.367 |
| 81 | 81 | 0.214 |
| 82 | 82 | 0.16 |
| 83 | 83 | 0.798 |
| 84 | 84 | 0.374 |
| 85 | 85 | 0.151 |
| 86 | 86 | 0.513 |
| 87 | 87 | 0.0345 |
| 88 | 88 | 0.711 |
| 89 | 89 | 0.0601 |
| 9 | 9 | 0.137 |
| 90 | 90 | 0.106 |
| 91 | 91 | 0.62 |
| 92 | 92 | 0.153 |
| 93 | 93 | 0.995 |
| 94 | 94 | 0.701 |
| 95 | 95 | 0.013 |
| 96 | 96 | 0.755 |
| 97 | 97 | 0.847 |
| 98 | 98 | 0.369 |
| 99 | 99 | 0.325 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11077
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
