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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00004752
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004752
|accession_numbers=CAGE;DRX008418;DRR009290;DRZ000715;DRZ002100;DRZ012065;DRZ013450
|accession_numbers_RNASeq=sRNA-Seq;DRX037209;DRR041575;DRZ007217
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
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|ancestors_in_disease_facet=
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|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000143
|comment=
|comment=
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|creation_date=
|data_phase=2
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|def=
|def=
|
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Line 35: Line 44:
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor3.CNhs12039.11429-118G7.hg38.nobarcode.ctss.bed.gz
|id=FF:11429-118G7
|id=FF:11429-118G7
|is_a=EFO:0002091;;FF:0000002;;FF:0000143;;FF:0000210
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|microRNAs=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11429
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ACTTGA.11429
|name=Preadipocyte - visceral, donor3
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|namespace=FANTOM5
Line 42: Line 65:
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|rna_box=118
|rna_box=118
|rna_catalog_number=CA802s-R10a
|rna_catalog_number=CA802s-R10a
Line 56: Line 82:
|rna_tube_id=118G7
|rna_tube_id=118G7
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|rna_weight_ug=10
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|sample_age=51
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|sample_category=primary cells
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|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.6705063830779e-237!GO:0043226;organelle;2.45670468996091e-190!GO:0043229;intracellular organelle;4.19549307655219e-190!GO:0043231;intracellular membrane-bound organelle;5.02673721977548e-189!GO:0043227;membrane-bound organelle;1.21974028051149e-188!GO:0005737;cytoplasm;2.90960618003191e-187!GO:0044422;organelle part;4.61596759447908e-147!GO:0044446;intracellular organelle part;9.5086062342081e-146!GO:0044444;cytoplasmic part;8.22641962765094e-139!GO:0032991;macromolecular complex;8.26128162280136e-105!GO:0030529;ribonucleoprotein complex;3.50839830175772e-93!GO:0044237;cellular metabolic process;8.37736657277825e-84!GO:0044238;primary metabolic process;1.28579816509457e-83!GO:0043170;macromolecule metabolic process;1.58354798625999e-79!GO:0005515;protein binding;7.63179883910973e-76!GO:0043233;organelle lumen;3.02452173399918e-74!GO:0031974;membrane-enclosed lumen;3.02452173399918e-74!GO:0005739;mitochondrion;3.69478486706273e-72!GO:0005634;nucleus;6.41565423807004e-72!GO:0044428;nuclear part;4.03438184832317e-70!GO:0003723;RNA binding;1.99083032784607e-67!GO:0005840;ribosome;1.19728628381621e-57!GO:0006412;translation;6.88874610323994e-52!GO:0043234;protein complex;9.50693299218548e-52!GO:0003735;structural constituent of ribosome;4.31038951119706e-51!GO:0031090;organelle membrane;5.20052258272617e-51!GO:0019538;protein metabolic process;1.61588296050665e-49!GO:0006396;RNA processing;4.54213753339968e-49!GO:0044429;mitochondrial part;1.42430364477632e-48!GO:0016043;cellular component organization and biogenesis;5.81667767749844e-48!GO:0033279;ribosomal subunit;2.04816193550344e-43!GO:0044260;cellular macromolecule metabolic process;2.07191788498322e-43!GO:0044267;cellular protein metabolic process;1.02157921698887e-42!GO:0031981;nuclear lumen;1.98255782204185e-42!GO:0015031;protein transport;2.2480866605895e-42!GO:0031967;organelle envelope;6.07029160887701e-42!GO:0043283;biopolymer metabolic process;1.13814797352912e-41!GO:0031975;envelope;1.18122254049499e-41!GO:0009058;biosynthetic process;2.11906735722519e-41!GO:0009059;macromolecule biosynthetic process;5.76362592242742e-41!GO:0033036;macromolecule localization;1.90743454656393e-40!GO:0005829;cytosol;2.11211312586446e-40!GO:0044249;cellular biosynthetic process;3.89798453088074e-40!GO:0045184;establishment of protein localization;7.60149018637955e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.14548345046048e-38!GO:0010467;gene expression;1.1380838140096e-37!GO:0008104;protein localization;1.68437702488923e-37!GO:0016071;mRNA metabolic process;8.00646391552799e-36!GO:0043228;non-membrane-bound organelle;9.54539624392072e-36!GO:0043232;intracellular non-membrane-bound organelle;9.54539624392072e-36!GO:0046907;intracellular transport;1.94135012080441e-35!GO:0008380;RNA splicing;7.53063386678491e-35!GO:0006996;organelle organization and biogenesis;1.18318975242647e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.00478669444409e-32!GO:0005740;mitochondrial envelope;5.48918276600422e-32!GO:0065003;macromolecular complex assembly;7.68738635070655e-32!GO:0006397;mRNA processing;1.36721158031447e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.40358430242466e-30!GO:0031966;mitochondrial membrane;6.32869738440561e-30!GO:0006886;intracellular protein transport;8.39211741696268e-30!GO:0022607;cellular component assembly;1.16762389307988e-29!GO:0019866;organelle inner membrane;6.94905871108003e-29!GO:0006259;DNA metabolic process;5.17129052466334e-28!GO:0005743;mitochondrial inner membrane;2.64552553100054e-27!GO:0005681;spliceosome;1.1719095814926e-24!GO:0005654;nucleoplasm;2.59944416005538e-24!GO:0006119;oxidative phosphorylation;6.62251756051378e-24!GO:0044445;cytosolic part;1.11970829416848e-23!GO:0007049;cell cycle;1.34593768351939e-23!GO:0015934;large ribosomal subunit;2.02286832390835e-23!GO:0044455;mitochondrial membrane part;4.60966785099498e-23!GO:0051649;establishment of cellular localization;9.25384070538531e-22!GO:0051641;cellular localization;1.6539035945068e-21!GO:0015935;small ribosomal subunit;4.24548521601685e-21!GO:0006457;protein folding;4.43499342850694e-21!GO:0003676;nucleic acid binding;6.52042905449412e-21!GO:0016462;pyrophosphatase activity;9.72909759404872e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.18679193919251e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.15293751215587e-20!GO:0005783;endoplasmic reticulum;5.008154295046e-20!GO:0012505;endomembrane system;5.4157360532407e-20!GO:0031980;mitochondrial lumen;6.29149044427211e-20!GO:0005759;mitochondrial matrix;6.29149044427211e-20!GO:0017111;nucleoside-triphosphatase activity;7.12499997765011e-20!GO:0044451;nucleoplasm part;1.7320744366397e-19!GO:0005730;nucleolus;3.20704640622682e-19!GO:0000166;nucleotide binding;5.42935162207231e-19!GO:0000278;mitotic cell cycle;5.7193180087134e-19!GO:0005746;mitochondrial respiratory chain;8.03411530524803e-19!GO:0022402;cell cycle process;6.02086056288505e-18!GO:0022618;protein-RNA complex assembly;1.11284252507873e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20796439758114e-17!GO:0005761;mitochondrial ribosome;2.81431521685062e-17!GO:0000313;organellar ribosome;2.81431521685062e-17!GO:0048770;pigment granule;2.90334539943061e-17!GO:0042470;melanosome;2.90334539943061e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.94827476856213e-17!GO:0051186;cofactor metabolic process;1.03697494326997e-16!GO:0043285;biopolymer catabolic process;1.45076838998987e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.62034412028149e-16!GO:0003954;NADH dehydrogenase activity;1.62034412028149e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.62034412028149e-16!GO:0044432;endoplasmic reticulum part;1.94865556024729e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.33566829674244e-16!GO:0005794;Golgi apparatus;7.18437494973542e-16!GO:0042254;ribosome biogenesis and assembly;7.22975189480204e-16!GO:0044265;cellular macromolecule catabolic process;7.50245186411968e-16!GO:0006974;response to DNA damage stimulus;1.00171423310353e-15!GO:0005694;chromosome;1.96575266992201e-15!GO:0006512;ubiquitin cycle;1.97078206117487e-15!GO:0009057;macromolecule catabolic process;2.25319012201163e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.41480346914553e-15!GO:0016070;RNA metabolic process;3.67675697584793e-15!GO:0019941;modification-dependent protein catabolic process;4.67453038834132e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.67453038834132e-15!GO:0006605;protein targeting;4.81459158883975e-15!GO:0008135;translation factor activity, nucleic acid binding;6.67489036188931e-15!GO:0044257;cellular protein catabolic process;7.01532215537882e-15!GO:0000087;M phase of mitotic cell cycle;8.94325131233166e-15!GO:0016874;ligase activity;9.30531486721727e-15!GO:0048193;Golgi vesicle transport;9.98767816229975e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.03220192178674e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.23244039951976e-14!GO:0045271;respiratory chain complex I;1.23244039951976e-14!GO:0005747;mitochondrial respiratory chain complex I;1.23244039951976e-14!GO:0007067;mitosis;1.27621156220512e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.29130418263976e-14!GO:0042773;ATP synthesis coupled electron transport;1.29130418263976e-14!GO:0051082;unfolded protein binding;1.29899377751526e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.68890623305423e-14!GO:0030163;protein catabolic process;1.81526842569043e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.38815219142335e-14!GO:0008134;transcription factor binding;3.39265753886817e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.76812299624878e-14!GO:0044427;chromosomal part;4.37784914896855e-14!GO:0044248;cellular catabolic process;9.49227667547717e-14!GO:0022403;cell cycle phase;1.17551647361207e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19321913937408e-13!GO:0000375;RNA splicing, via transesterification reactions;1.19321913937408e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19321913937408e-13!GO:0032553;ribonucleotide binding;5.10475062026657e-13!GO:0032555;purine ribonucleotide binding;5.10475062026657e-13!GO:0017076;purine nucleotide binding;5.34283561031797e-13!GO:0006260;DNA replication;5.60591403380639e-13!GO:0006281;DNA repair;6.15363878600884e-13!GO:0006732;coenzyme metabolic process;1.52898657946721e-12!GO:0005793;ER-Golgi intermediate compartment;2.01684553156879e-12!GO:0009259;ribonucleotide metabolic process;2.66138605101385e-12!GO:0051301;cell division;4.4180035328831e-12!GO:0009055;electron carrier activity;6.10409006844528e-12!GO:0003743;translation initiation factor activity;8.04362514137941e-12!GO:0006163;purine nucleotide metabolic process;9.6985723379222e-12!GO:0000279;M phase;2.07724611620834e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.138707128065e-11!GO:0009150;purine ribonucleotide metabolic process;3.26723193084895e-11!GO:0006413;translational initiation;3.43329576156412e-11!GO:0009719;response to endogenous stimulus;4.31484563212797e-11!GO:0009260;ribonucleotide biosynthetic process;5.72364635281895e-11!GO:0016192;vesicle-mediated transport;5.94255859250227e-11!GO:0051276;chromosome organization and biogenesis;6.44925184417307e-11!GO:0006164;purine nucleotide biosynthetic process;6.98388960483196e-11!GO:0005789;endoplasmic reticulum membrane;7.12978415671396e-11!GO:0005635;nuclear envelope;8.0303224234103e-11!GO:0005524;ATP binding;8.31536706863363e-11!GO:0043412;biopolymer modification;9.82540717312675e-11!GO:0006399;tRNA metabolic process;1.0161638775464e-10!GO:0006364;rRNA processing;1.76212692558111e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.23840613680477e-10!GO:0032559;adenyl ribonucleotide binding;2.34288102196935e-10!GO:0030554;adenyl nucleotide binding;3.37528509264296e-10!GO:0000074;regulation of progression through cell cycle;3.71224427320751e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.72297729111389e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.99583153522571e-10!GO:0009141;nucleoside triphosphate metabolic process;4.13390110116159e-10!GO:0044453;nuclear membrane part;4.3431760587875e-10!GO:0016887;ATPase activity;4.36676731852259e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.36676731852259e-10!GO:0051726;regulation of cell cycle;4.43348870344011e-10!GO:0006446;regulation of translational initiation;4.49177766992064e-10!GO:0016072;rRNA metabolic process;4.78121927463783e-10!GO:0016604;nuclear body;4.82804440728234e-10!GO:0031965;nuclear membrane;5.23142301848586e-10!GO:0042623;ATPase activity, coupled;7.28536147873589e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.33447314820072e-10!GO:0009144;purine nucleoside triphosphate metabolic process;7.33447314820072e-10!GO:0012501;programmed cell death;1.04722596159063e-09!GO:0006464;protein modification process;1.78536302133629e-09!GO:0006915;apoptosis;1.79069304425764e-09!GO:0006913;nucleocytoplasmic transport;1.90687751478348e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.60122953454204e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.61834710172443e-09!GO:0051169;nuclear transport;4.41664660314298e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.67850997912017e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.67850997912017e-09!GO:0006461;protein complex assembly;5.1792895297222e-09!GO:0008639;small protein conjugating enzyme activity;5.67475574970594e-09!GO:0048523;negative regulation of cellular process;7.02519034296061e-09!GO:0006323;DNA packaging;8.21190101906995e-09!GO:0003712;transcription cofactor activity;8.26479311297899e-09!GO:0030532;small nuclear ribonucleoprotein complex;9.19524484084488e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.56241165247577e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.56241165247577e-09!GO:0065004;protein-DNA complex assembly;9.61959008244023e-09!GO:0009117;nucleotide metabolic process;1.08591337794808e-08!GO:0015986;ATP synthesis coupled proton transport;1.17755887809505e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17755887809505e-08!GO:0019787;small conjugating protein ligase activity;1.17946445368242e-08!GO:0004842;ubiquitin-protein ligase activity;1.25521095503837e-08!GO:0005788;endoplasmic reticulum lumen;1.32850171613147e-08!GO:0008219;cell death;1.35114386003441e-08!GO:0016265;death;1.35114386003441e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.35699231400202e-08!GO:0009060;aerobic respiration;1.77221210843383e-08!GO:0065002;intracellular protein transport across a membrane;1.81408959413495e-08!GO:0046034;ATP metabolic process;1.84070517382325e-08!GO:0000785;chromatin;1.86727892421572e-08!GO:0051188;cofactor biosynthetic process;2.04478598938527e-08!GO:0005643;nuclear pore;2.20366990355271e-08!GO:0009056;catabolic process;2.6384496689718e-08!GO:0008565;protein transporter activity;3.94245106707045e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.54392030016246e-08!GO:0030120;vesicle coat;4.75186891841454e-08!GO:0030662;coated vesicle membrane;4.75186891841454e-08!GO:0016491;oxidoreductase activity;4.92678542498775e-08!GO:0004386;helicase activity;5.40369477084542e-08!GO:0007005;mitochondrion organization and biogenesis;5.52182005203139e-08!GO:0006333;chromatin assembly or disassembly;5.52182005203139e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.6898215138375e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.6898215138375e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.6898215138375e-08!GO:0016607;nuclear speck;5.98639302127166e-08!GO:0043687;post-translational protein modification;6.62003590479405e-08!GO:0017038;protein import;6.6819785503723e-08!GO:0045333;cellular respiration;7.13514973552153e-08!GO:0003697;single-stranded DNA binding;7.61039314257939e-08!GO:0003924;GTPase activity;1.01444819293809e-07!GO:0043038;amino acid activation;1.04008108988567e-07!GO:0006418;tRNA aminoacylation for protein translation;1.04008108988567e-07!GO:0043039;tRNA aminoacylation;1.04008108988567e-07!GO:0043566;structure-specific DNA binding;1.12336840290705e-07!GO:0008026;ATP-dependent helicase activity;1.16585032301301e-07!GO:0016881;acid-amino acid ligase activity;1.23514977793376e-07!GO:0019829;cation-transporting ATPase activity;1.26946341462265e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.53488038244319e-07!GO:0006366;transcription from RNA polymerase II promoter;1.92113538915549e-07!GO:0006754;ATP biosynthetic process;2.19654706146643e-07!GO:0006753;nucleoside phosphate metabolic process;2.19654706146643e-07!GO:0048519;negative regulation of biological process;2.30359328391878e-07!GO:0006334;nucleosome assembly;2.30690721664292e-07!GO:0005768;endosome;2.67486244024169e-07!GO:0046930;pore complex;2.85116299025936e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.87969288223077e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.93134989004508e-07!GO:0006099;tricarboxylic acid cycle;3.09179788337364e-07!GO:0046356;acetyl-CoA catabolic process;3.09179788337364e-07!GO:0044431;Golgi apparatus part;3.64434568013932e-07!GO:0015630;microtubule cytoskeleton;3.67736946742201e-07!GO:0016779;nucleotidyltransferase activity;4.88161302872162e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.88161302872162e-07!GO:0051246;regulation of protein metabolic process;6.09798938427859e-07!GO:0051187;cofactor catabolic process;7.00813452437669e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.00813452437669e-07!GO:0006403;RNA localization;7.53864197095903e-07!GO:0005762;mitochondrial large ribosomal subunit;7.81146067308306e-07!GO:0000315;organellar large ribosomal subunit;7.81146067308306e-07!GO:0050657;nucleic acid transport;7.81439576729293e-07!GO:0051236;establishment of RNA localization;7.81439576729293e-07!GO:0050658;RNA transport;7.81439576729293e-07!GO:0016787;hydrolase activity;8.24552327629747e-07!GO:0048475;coated membrane;8.46048813453843e-07!GO:0030117;membrane coat;8.46048813453843e-07!GO:0050794;regulation of cellular process;8.80116615999103e-07!GO:0031497;chromatin assembly;9.69378953350917e-07!GO:0006084;acetyl-CoA metabolic process;9.69378953350917e-07!GO:0045259;proton-transporting ATP synthase complex;1.04894133063062e-06!GO:0009108;coenzyme biosynthetic process;1.35030631150798e-06!GO:0042981;regulation of apoptosis;1.49277406296236e-06!GO:0043067;regulation of programmed cell death;1.77521222163416e-06!GO:0043069;negative regulation of programmed cell death;2.07195749902709e-06!GO:0009109;coenzyme catabolic process;2.09701333353039e-06!GO:0004298;threonine endopeptidase activity;2.42235405533829e-06!GO:0005667;transcription factor complex;2.58633361155247e-06!GO:0043066;negative regulation of apoptosis;2.76984180995228e-06!GO:0000245;spliceosome assembly;3.34580085440934e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.39238933845898e-06!GO:0006261;DNA-dependent DNA replication;3.44732422056335e-06!GO:0006916;anti-apoptosis;4.35680255460791e-06!GO:0016853;isomerase activity;4.6251674399901e-06!GO:0005819;spindle;4.78397601931874e-06!GO:0044440;endosomal part;5.17774756834347e-06!GO:0010008;endosome membrane;5.17774756834347e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.3129118648497e-06!GO:0031324;negative regulation of cellular metabolic process;5.80089305439452e-06!GO:0005813;centrosome;6.84637919897855e-06!GO:0006613;cotranslational protein targeting to membrane;7.81172884524063e-06!GO:0006752;group transfer coenzyme metabolic process;8.37519075928652e-06!GO:0000139;Golgi membrane;8.69061303339578e-06!GO:0005770;late endosome;8.85216832754247e-06!GO:0032446;protein modification by small protein conjugation;9.58588154346627e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.12654353818256e-05!GO:0016740;transferase activity;1.32662338360415e-05!GO:0000151;ubiquitin ligase complex;1.36078471582695e-05!GO:0005815;microtubule organizing center;1.42455784027078e-05!GO:0000775;chromosome, pericentric region;1.4295790296642e-05!GO:0031252;leading edge;1.43336084591903e-05!GO:0016567;protein ubiquitination;1.46179873817412e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.57524432546583e-05!GO:0045454;cell redox homeostasis;1.59843059718881e-05!GO:0000314;organellar small ribosomal subunit;1.71341126961882e-05!GO:0005763;mitochondrial small ribosomal subunit;1.71341126961882e-05!GO:0051028;mRNA transport;1.87565367868641e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.88313584913516e-05!GO:0016859;cis-trans isomerase activity;2.23636045111331e-05!GO:0051329;interphase of mitotic cell cycle;2.44892670269945e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.52518889214904e-05!GO:0006091;generation of precursor metabolites and energy;2.60139141842982e-05!GO:0006793;phosphorus metabolic process;2.62434370948881e-05!GO:0006796;phosphate metabolic process;2.62434370948881e-05!GO:0007051;spindle organization and biogenesis;2.9641562919863e-05!GO:0009165;nucleotide biosynthetic process;3.03411962425331e-05!GO:0051170;nuclear import;3.05227695847206e-05!GO:0003714;transcription corepressor activity;3.29106321693754e-05!GO:0005798;Golgi-associated vesicle;3.5561382813592e-05!GO:0016049;cell growth;3.64835915557805e-05!GO:0005525;GTP binding;3.7063981480725e-05!GO:0003899;DNA-directed RNA polymerase activity;3.74270034610697e-05!GO:0008361;regulation of cell size;3.87853341458001e-05!GO:0030867;rough endoplasmic reticulum membrane;4.18249527127786e-05!GO:0005773;vacuole;4.1979424481081e-05!GO:0043623;cellular protein complex assembly;4.41868429784825e-05!GO:0016564;transcription repressor activity;4.5871486706049e-05!GO:0006606;protein import into nucleus;4.60110292916288e-05!GO:0001558;regulation of cell growth;5.20646561682157e-05!GO:0005048;signal sequence binding;5.88891489838002e-05!GO:0043021;ribonucleoprotein binding;6.31780772789664e-05!GO:0009892;negative regulation of metabolic process;6.90268523864772e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.6936498952627e-05!GO:0019867;outer membrane;7.85323558630162e-05!GO:0003724;RNA helicase activity;7.95965932900055e-05!GO:0031988;membrane-bound vesicle;9.21215596842203e-05!GO:0051325;interphase;9.56611223631215e-05!GO:0007010;cytoskeleton organization and biogenesis;9.65040224181431e-05!GO:0005657;replication fork;9.7700885104089e-05!GO:0031968;organelle outer membrane;0.000102180855189451!GO:0006612;protein targeting to membrane;0.000116948447796988!GO:0045786;negative regulation of progression through cell cycle;0.000121266332508349!GO:0051789;response to protein stimulus;0.000122044405287186!GO:0006986;response to unfolded protein;0.000122044405287186!GO:0030036;actin cytoskeleton organization and biogenesis;0.000128376036818879!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000132557280023099!GO:0016310;phosphorylation;0.000153015217820955!GO:0008654;phospholipid biosynthetic process;0.000164686811245222!GO:0008094;DNA-dependent ATPase activity;0.000172621289892208!GO:0000075;cell cycle checkpoint;0.000174221772899208!GO:0005769;early endosome;0.000175510376283366!GO:0051427;hormone receptor binding;0.000177032562309168!GO:0016568;chromatin modification;0.000180367479152384!GO:0006626;protein targeting to mitochondrion;0.000182990501012424!GO:0033116;ER-Golgi intermediate compartment membrane;0.000192110587171885!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000195821356263813!GO:0000323;lytic vacuole;0.000207501371676389!GO:0005764;lysosome;0.000207501371676389!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000209875281527902!GO:0032561;guanyl ribonucleotide binding;0.000215117487282035!GO:0019001;guanyl nucleotide binding;0.000215117487282035!GO:0005741;mitochondrial outer membrane;0.000215117487282035!GO:0015980;energy derivation by oxidation of organic compounds;0.000215117487282035!GO:0016563;transcription activator activity;0.000226317635481448!GO:0031982;vesicle;0.00023855741794332!GO:0031410;cytoplasmic vesicle;0.000241936214862154!GO:0008033;tRNA processing;0.000323393593050692!GO:0003713;transcription coactivator activity;0.000326655520031899!GO:0004576;oligosaccharyl transferase activity;0.000334562145755665!GO:0050789;regulation of biological process;0.000342099091600517!GO:0043681;protein import into mitochondrion;0.000345068522431176!GO:0005885;Arp2/3 protein complex;0.000351630067779681!GO:0035257;nuclear hormone receptor binding;0.000369804533535031!GO:0006839;mitochondrial transport;0.000384685732110815!GO:0008250;oligosaccharyl transferase complex;0.000390575191368899!GO:0000786;nucleosome;0.000393775363258874!GO:0044452;nucleolar part;0.00042210612675988!GO:0048522;positive regulation of cellular process;0.000438870643977588!GO:0016481;negative regulation of transcription;0.000492752018134812!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000501809481318937!GO:0019843;rRNA binding;0.000512113784230369!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000524349720201709!GO:0030133;transport vesicle;0.000530571741542849!GO:0005905;coated pit;0.000594251939157346!GO:0030663;COPI coated vesicle membrane;0.000623430257734852!GO:0030126;COPI vesicle coat;0.000623430257734852!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000657613561823048!GO:0006950;response to stress;0.000687734696852002!GO:0030029;actin filament-based process;0.000835540879818592!GO:0007088;regulation of mitosis;0.000864584525662814!GO:0019899;enzyme binding;0.000883224720383637!GO:0018196;peptidyl-asparagine modification;0.000883224720383637!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000883224720383637!GO:0006383;transcription from RNA polymerase III promoter;0.000920388623655942!GO:0003690;double-stranded DNA binding;0.000947198918151036!GO:0051920;peroxiredoxin activity;0.00096548519292915!GO:0051252;regulation of RNA metabolic process;0.00102280078305279!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00103278883016879!GO:0016363;nuclear matrix;0.00104081637158226!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00104081637158226!GO:0046483;heterocycle metabolic process;0.00107081775644615!GO:0006414;translational elongation;0.00109346873227346!GO:0003684;damaged DNA binding;0.00112927311781735!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00113269823471001!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113269823471001!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113269823471001!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113269823471001!GO:0051168;nuclear export;0.00113547249134176!GO:0031072;heat shock protein binding;0.00124318480196564!GO:0046474;glycerophospholipid biosynthetic process;0.00128542836389468!GO:0030880;RNA polymerase complex;0.0013176067069445!GO:0003729;mRNA binding;0.00138165136478125!GO:0007006;mitochondrial membrane organization and biogenesis;0.0013991154829311!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0014081491584329!GO:0048500;signal recognition particle;0.00143512570528173!GO:0008186;RNA-dependent ATPase activity;0.00162178955825933!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00164053129003965!GO:0030137;COPI-coated vesicle;0.00176435144406154!GO:0005684;U2-dependent spliceosome;0.00184392721706887!GO:0051052;regulation of DNA metabolic process;0.001941375400145!GO:0007243;protein kinase cascade;0.0019536759941255!GO:0004527;exonuclease activity;0.00214171660268099!GO:0042802;identical protein binding;0.00221257122964185!GO:0005791;rough endoplasmic reticulum;0.00222583489107926!GO:0006302;double-strand break repair;0.00225215319802001!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00226309555910555!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00226309555910555!GO:0000776;kinetochore;0.00232639750898882!GO:0043284;biopolymer biosynthetic process;0.00242741448003284!GO:0048471;perinuclear region of cytoplasm;0.00247387075922!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00248139308994923!GO:0008312;7S RNA binding;0.00248139308994923!GO:0030132;clathrin coat of coated pit;0.00250397550822542!GO:0046489;phosphoinositide biosynthetic process;0.00252085840110935!GO:0015631;tubulin binding;0.00253724907728824!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00254448208353626!GO:0006891;intra-Golgi vesicle-mediated transport;0.0025744756042243!GO:0044262;cellular carbohydrate metabolic process;0.0025744756042243!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00275687890293515!GO:0000082;G1/S transition of mitotic cell cycle;0.0030001735662457!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00309365417619335!GO:0000428;DNA-directed RNA polymerase complex;0.00309365417619335!GO:0030658;transport vesicle membrane;0.00317641051473933!GO:0030176;integral to endoplasmic reticulum membrane;0.00330747706469492!GO:0043488;regulation of mRNA stability;0.00336623939889783!GO:0043487;regulation of RNA stability;0.00336623939889783!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00343711257617762!GO:0045047;protein targeting to ER;0.00343711257617762!GO:0008047;enzyme activator activity;0.00354775214674236!GO:0008180;signalosome;0.00373028786479551!GO:0006220;pyrimidine nucleotide metabolic process;0.00381559893020855!GO:0004004;ATP-dependent RNA helicase activity;0.00398282019786724!GO:0000059;protein import into nucleus, docking;0.00398282019786724!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00412930195456058!GO:0040008;regulation of growth;0.00440867861877178!GO:0007052;mitotic spindle organization and biogenesis;0.00451158052301435!GO:0065009;regulation of a molecular function;0.00453503969741738!GO:0003678;DNA helicase activity;0.00458343726414644!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0045851037641366!GO:0015002;heme-copper terminal oxidase activity;0.0045851037641366!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0045851037641366!GO:0004129;cytochrome-c oxidase activity;0.0045851037641366!GO:0008139;nuclear localization sequence binding;0.00460219047227128!GO:0009112;nucleobase metabolic process;0.00461717734059302!GO:0048144;fibroblast proliferation;0.00465013535095024!GO:0048145;regulation of fibroblast proliferation;0.00465013535095024!GO:0004177;aminopeptidase activity;0.00491801158452631!GO:0030134;ER to Golgi transport vesicle;0.00520147918178097!GO:0051087;chaperone binding;0.00531678720681133!GO:0006275;regulation of DNA replication;0.00533566235330365!GO:0001726;ruffle;0.00534058723481692!GO:0031902;late endosome membrane;0.00540825390220178!GO:0008243;plasminogen activator activity;0.00549311875209635!GO:0017166;vinculin binding;0.00550367938032028!GO:0019222;regulation of metabolic process;0.00550886694115538!GO:0008168;methyltransferase activity;0.00552919726279897!GO:0006595;polyamine metabolic process;0.00557886816976685!GO:0030127;COPII vesicle coat;0.00563379726921325!GO:0012507;ER to Golgi transport vesicle membrane;0.00563379726921325!GO:0016741;transferase activity, transferring one-carbon groups;0.00571312039034982!GO:0016272;prefoldin complex;0.00575236871510652!GO:0006979;response to oxidative stress;0.00613591997450712!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00615192153238474!GO:0015399;primary active transmembrane transporter activity;0.00615192153238474!GO:0016197;endosome transport;0.00619812878105886!GO:0048146;positive regulation of fibroblast proliferation;0.00623337069612933!GO:0007050;cell cycle arrest;0.00634527416718962!GO:0015992;proton transport;0.00657735370824081!GO:0006402;mRNA catabolic process;0.00659044229059994!GO:0009116;nucleoside metabolic process;0.0066624767138853!GO:0008632;apoptotic program;0.00683374198491926!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00691622112613001!GO:0005869;dynactin complex;0.0069642588886602!GO:0004518;nuclease activity;0.00720030698802268!GO:0006818;hydrogen transport;0.00738523509210144!GO:0007093;mitotic cell cycle checkpoint;0.00744677085375689!GO:0035258;steroid hormone receptor binding;0.00753899084765602!GO:0009967;positive regulation of signal transduction;0.00780246313998253!GO:0006778;porphyrin metabolic process;0.00791234154888881!GO:0033013;tetrapyrrole metabolic process;0.00791234154888881!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00799453464124386!GO:0008092;cytoskeletal protein binding;0.00818841025599083!GO:0000049;tRNA binding;0.00825878541685198!GO:0006740;NADPH regeneration;0.00845523941319869!GO:0006098;pentose-phosphate shunt;0.00845523941319869!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00845523941319869!GO:0051540;metal cluster binding;0.00859022607077462!GO:0051536;iron-sulfur cluster binding;0.00859022607077462!GO:0030660;Golgi-associated vesicle membrane;0.00886180279850835!GO:0030027;lamellipodium;0.00895157076115023!GO:0043022;ribosome binding;0.00908370126946802!GO:0048487;beta-tubulin binding;0.00922570499156046!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0094082408394009!GO:0032508;DNA duplex unwinding;0.00976135124294389!GO:0032392;DNA geometric change;0.00976135124294389!GO:0006401;RNA catabolic process;0.00991536861698705!GO:0030118;clathrin coat;0.0100317604931981!GO:0000339;RNA cap binding;0.0100762774189891!GO:0005096;GTPase activator activity;0.0101716339978506!GO:0050662;coenzyme binding;0.0102193561165241!GO:0005862;muscle thin filament tropomyosin;0.0102193561165241!GO:0031124;mRNA 3'-end processing;0.0102954664789378!GO:0006509;membrane protein ectodomain proteolysis;0.0103678375986825!GO:0033619;membrane protein proteolysis;0.0103678375986825!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0107509921969059!GO:0006892;post-Golgi vesicle-mediated transport;0.0108033950716336!GO:0003746;translation elongation factor activity;0.0108156434393151!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109488459533222!GO:0046467;membrane lipid biosynthetic process;0.0111746707983423!GO:0022890;inorganic cation transmembrane transporter activity;0.0113602901507246!GO:0019206;nucleoside kinase activity;0.0114513932362865!GO:0019798;procollagen-proline dioxygenase activity;0.0114513932362865!GO:0006144;purine base metabolic process;0.0114961004960907!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0116253402744499!GO:0030521;androgen receptor signaling pathway;0.0118982902739057!GO:0003711;transcription elongation regulator activity;0.0119124973478148!GO:0006289;nucleotide-excision repair;0.012032914495948!GO:0031543;peptidyl-proline dioxygenase activity;0.0122748079557956!GO:0005832;chaperonin-containing T-complex;0.0123750204406277!GO:0003682;chromatin binding;0.0123836682876227!GO:0008022;protein C-terminus binding;0.0123836682876227!GO:0030041;actin filament polymerization;0.0124342605339609!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0125682659398622!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0131995871190753!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0131995871190753!GO:0005758;mitochondrial intermembrane space;0.0136464372973346!GO:0005874;microtubule;0.0136464372973346!GO:0006310;DNA recombination;0.0139150132873266!GO:0008154;actin polymerization and/or depolymerization;0.0139570383428108!GO:0042168;heme metabolic process;0.0139852153400064!GO:0007040;lysosome organization and biogenesis;0.0140279742329353!GO:0006268;DNA unwinding during replication;0.0145398403562783!GO:0007059;chromosome segregation;0.0146452688099597!GO:0000178;exosome (RNase complex);0.0149334502625324!GO:0030125;clathrin vesicle coat;0.0158185744726511!GO:0030665;clathrin coated vesicle membrane;0.0158185744726511!GO:0005637;nuclear inner membrane;0.0165562391492405!GO:0045045;secretory pathway;0.016568597216487!GO:0006497;protein amino acid lipidation;0.0170620305369241!GO:0033673;negative regulation of kinase activity;0.0170811049445843!GO:0006469;negative regulation of protein kinase activity;0.0170811049445843!GO:0032984;macromolecular complex disassembly;0.0172208762070704!GO:0051287;NAD binding;0.0173573690645796!GO:0007033;vacuole organization and biogenesis;0.017497026858936!GO:0048518;positive regulation of biological process;0.0179741351090275!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0182930906233837!GO:0016126;sterol biosynthetic process;0.018839897867043!GO:0031529;ruffle organization and biogenesis;0.0190493938393516!GO:0007021;tubulin folding;0.0192623048728963!GO:0045941;positive regulation of transcription;0.019387747413334!GO:0009124;nucleoside monophosphate biosynthetic process;0.019711829102369!GO:0009123;nucleoside monophosphate metabolic process;0.019711829102369!GO:0006352;transcription initiation;0.019820801997297!GO:0031625;ubiquitin protein ligase binding;0.0200209826126109!GO:0016251;general RNA polymerase II transcription factor activity;0.02006421769233!GO:0006506;GPI anchor biosynthetic process;0.02006421769233!GO:0005876;spindle microtubule;0.0204447195099133!GO:0031970;organelle envelope lumen;0.0207186409074672!GO:0006650;glycerophospholipid metabolic process;0.0207186409074672!GO:0065007;biological regulation;0.0207548951429636!GO:0004003;ATP-dependent DNA helicase activity;0.0208612531490181!GO:0031418;L-ascorbic acid binding;0.0208612531490181!GO:0005801;cis-Golgi network;0.0211741844800201!GO:0051348;negative regulation of transferase activity;0.0212523327939292!GO:0006611;protein export from nucleus;0.0214793560976236!GO:0005774;vacuolar membrane;0.0214793560976236!GO:0008610;lipid biosynthetic process;0.0216111230863553!GO:0016044;membrane organization and biogenesis;0.0216652579241969!GO:0050681;androgen receptor binding;0.0217072249577505!GO:0043596;nuclear replication fork;0.0217072249577505!GO:0030659;cytoplasmic vesicle membrane;0.0218062004338697!GO:0045892;negative regulation of transcription, DNA-dependent;0.0225028309601736!GO:0051128;regulation of cellular component organization and biogenesis;0.0231282629742355!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0233670902190054!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0235240422514911!GO:0006405;RNA export from nucleus;0.0246508947865032!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0247365579244842!GO:0031901;early endosome membrane;0.0249811348881239!GO:0006007;glucose catabolic process;0.0251439747831481!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0255464882490476!GO:0006779;porphyrin biosynthetic process;0.0258613114654495!GO:0033014;tetrapyrrole biosynthetic process;0.0258613114654495!GO:0000910;cytokinesis;0.0260810172404767!GO:0043241;protein complex disassembly;0.026663952703024!GO:0030508;thiol-disulfide exchange intermediate activity;0.0272274556222387!GO:0009303;rRNA transcription;0.0278546424437933!GO:0043624;cellular protein complex disassembly;0.0282614438824031!GO:0048468;cell development;0.0283239803232017!GO:0031371;ubiquitin conjugating enzyme complex;0.028356508747713!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0283702741132034!GO:0004532;exoribonuclease activity;0.028569441786174!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.028569441786174!GO:0016408;C-acyltransferase activity;0.028569441786174!GO:0007264;small GTPase mediated signal transduction;0.0288588577159823!GO:0006505;GPI anchor metabolic process;0.0292548512623911!GO:0015036;disulfide oxidoreductase activity;0.0294646720395909!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0296552435724016!GO:0008538;proteasome activator activity;0.0296659871286564!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0297436091253179!GO:0042158;lipoprotein biosynthetic process;0.0302432666187036!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0304808661208712!GO:0007017;microtubule-based process;0.0308453492469357!GO:0016860;intramolecular oxidoreductase activity;0.0310412448715287!GO:0003756;protein disulfide isomerase activity;0.0316094750742575!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0316094750742575!GO:0006378;mRNA polyadenylation;0.0316094750742575!GO:0030384;phosphoinositide metabolic process;0.0316094750742575!GO:0008637;apoptotic mitochondrial changes;0.0320205628792317!GO:0009262;deoxyribonucleotide metabolic process;0.0322295685052951!GO:0005100;Rho GTPase activator activity;0.0324298659560242!GO:0042770;DNA damage response, signal transduction;0.0325943637608284!GO:0045893;positive regulation of transcription, DNA-dependent;0.0328305303031959!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0331711626394638!GO:0030911;TPR domain binding;0.0332537115031165!GO:0051101;regulation of DNA binding;0.033341257939056!GO:0005669;transcription factor TFIID complex;0.0335906871956573!GO:0043492;ATPase activity, coupled to movement of substances;0.0336128412883279!GO:0000209;protein polyubiquitination;0.0337538553102443!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0340936410585695!GO:0030032;lamellipodium biogenesis;0.0341159363702129!GO:0022408;negative regulation of cell-cell adhesion;0.0344894955916576!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0349159329882047!GO:0008408;3'-5' exonuclease activity;0.0356911148246568!GO:0006118;electron transport;0.0357790261279779!GO:0006376;mRNA splice site selection;0.0358898178735183!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0358898178735183!GO:0009161;ribonucleoside monophosphate metabolic process;0.0358898178735183!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0358898178735183!GO:0030433;ER-associated protein catabolic process;0.0361953831169101!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0361953831169101!GO:0045936;negative regulation of phosphate metabolic process;0.0363085842084163!GO:0022411;cellular component disassembly;0.0364194339923194!GO:0046128;purine ribonucleoside metabolic process;0.0364304093155965!GO:0042278;purine nucleoside metabolic process;0.0364304093155965!GO:0000792;heterochromatin;0.0366372027697963!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0369495819940745!GO:0045039;protein import into mitochondrial inner membrane;0.0369495819940745!GO:0022415;viral reproductive process;0.0374916758138218!GO:0009119;ribonucleoside metabolic process;0.037585172532671!GO:0030518;steroid hormone receptor signaling pathway;0.037726147875078!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038722868597795!GO:0006284;base-excision repair;0.0389616741472563!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0390966589766257!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0394541499336233!GO:0031123;RNA 3'-end processing;0.039698905100961!GO:0030119;AP-type membrane coat adaptor complex;0.0397874292016442!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0402837312451191!GO:0010257;NADH dehydrogenase complex assembly;0.0402837312451191!GO:0033108;mitochondrial respiratory chain complex assembly;0.0402837312451191!GO:0035035;histone acetyltransferase binding;0.0404369178811506!GO:0030308;negative regulation of cell growth;0.0405575053382052!GO:0019752;carboxylic acid metabolic process;0.0405575053382052!GO:0000922;spindle pole;0.0405619270726088!GO:0045792;negative regulation of cell size;0.0405619270726088!GO:0006082;organic acid metabolic process;0.0411995034518607!GO:0050790;regulation of catalytic activity;0.0420071433252944!GO:0043189;H4/H2A histone acetyltransferase complex;0.0420425253965536!GO:0030145;manganese ion binding;0.0420963158326701!GO:0030833;regulation of actin filament polymerization;0.0423460633436433!GO:0009451;RNA modification;0.0423460633436433!GO:0005784;translocon complex;0.0435366634319065!GO:0007034;vacuolar transport;0.0435584328464812!GO:0006520;amino acid metabolic process;0.0439229743651918!GO:0043065;positive regulation of apoptosis;0.0442369874041883!GO:0006783;heme biosynthetic process;0.0443194587639787!GO:0044437;vacuolar part;0.045994904073522!GO:0005583;fibrillar collagen;0.0460646800465582!GO:0006270;DNA replication initiation;0.0460646800465582!GO:0044433;cytoplasmic vesicle part;0.0463636018656938!GO:0007346;regulation of progression through mitotic cell cycle;0.0463874806621916!GO:0006354;RNA elongation;0.0464577684878923!GO:0005765;lysosomal membrane;0.046493665953838!GO:0006733;oxidoreduction coenzyme metabolic process;0.0468315027360656!GO:0047485;protein N-terminus binding;0.0477745728686538!GO:0000096;sulfur amino acid metabolic process;0.0489701919313789!GO:0003923;GPI-anchor transamidase activity;0.0489701919313789!GO:0016255;attachment of GPI anchor to protein;0.0489701919313789!GO:0042765;GPI-anchor transamidase complex;0.0489701919313789!GO:0008234;cysteine-type peptidase activity;0.0492488148531972!GO:0008629;induction of apoptosis by intracellular signals;0.0492488148531972!GO:0006693;prostaglandin metabolic process;0.0492639891274317!GO:0006692;prostanoid metabolic process;0.0492639891274317!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0495916655471643
|sample_id=11429
|sample_id=11429
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=heart
|sample_tissue=heart
|top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106
|top_motifs=EN1,2:1.74655815021;GZF1:1.6671441606;NKX2-2,8:1.66584932636;HES1:1.6351898398;UFEwm:1.57466750442;ALX4:1.47201709791;PAX1,9:1.41946851874;RXR{A,B,G}:1.38083148138;ESR1:1.35678417963;ZNF238:1.30837240931;KLF4:1.10612077368;IKZF1:1.06014416766;FOXL1:1.00680464219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.97870185935;TAL1_TCF{3,4,12}:0.970475773821;TFCP2:0.953712940906;NR3C1:0.915447083606;GLI1..3:0.743972164939;NFE2L1:0.743748310768;HOX{A4,D4}:0.722844014817;NR1H4:0.708173668567;TFDP1:0.706562574626;XBP1:0.68562637481;HOX{A5,B5}:0.676670290588;GATA4:0.671975089523;YY1:0.664239022472;SPZ1:0.643785437233;NKX3-2:0.643411852646;GFI1B:0.634947701936;ZIC1..3:0.62200873678;ZBTB6:0.619277655602;GCM1,2:0.616516008642;TLX1..3_NFIC{dimer}:0.612047785735;SRF:0.607580772412;ESRRA:0.60685922272;NANOG{mouse}:0.600896172383;TEAD1:0.550418500988;TP53:0.545747797262;HAND1,2:0.518842436188;FOX{I1,J2}:0.493511851335;E2F1..5:0.47948173641;HSF1,2:0.476463886012;MYBL2:0.473399411747;NKX3-1:0.466404090296;ATF6:0.453169302851;NR5A1,2:0.446188679312;ZNF384:0.445094574853;MYB:0.441577267415;EVI1:0.40634263181;EBF1:0.393634726276;NFE2L2:0.385199172724;MZF1:0.381729810428;GFI1:0.377434572831;RXRA_VDR{dimer}:0.36402978146;PRDM1:0.348805397488;NFATC1..3:0.32831181578;GTF2I:0.303667182517;TFAP4:0.288790651223;TBP:0.28756975292;MAFB:0.280596341739;BACH2:0.278321310852;TFAP2B:0.273375641657;ZNF423:0.267254929625;PPARG:0.266135298119;TFAP2{A,C}:0.265871227021;FOS_FOS{B,L1}_JUN{B,D}:0.225573515217;LEF1_TCF7_TCF7L1,2:0.224684908211;PAX8:0.222843353391;PAX5:0.222371574474;CDC5L:0.220439989655;ELK1,4_GABP{A,B1}:0.210031773118;ZNF143:0.206722510318;PBX1:0.198832067256;SMAD1..7,9:0.186168644403;EGR1..3:0.178167215899;SOX17:0.16165736655;TEF:0.161405419656;XCPE1{core}:0.132263122409;ARID5B:0.111025730028;TBX4,5:0.103446648791;FOXD3:0.0943783001196;ZNF148:0.0899587678401;LHX3,4:0.0861820830199;NR6A1:0.0762267293385;STAT2,4,6:0.0607922438609;HIF1A:0.0570473860125;AR:0.0564983298776;TOPORS:0.0553091824812;HIC1:0.0324626874292;IRF1,2:0.0194970883921;DBP:0.00226913249694;PATZ1:-0.0119539971929;NRF1:-0.0189571319803;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0235898811968;PAX3,7:-0.0290879022032;NFIX:-0.0477402132595;POU3F1..4:-0.0555615628313;HBP1_HMGB_SSRP1_UBTF:-0.0556717214454;HOX{A6,A7,B6,B7}:-0.0577397090287;MTE{core}:-0.0577530591499;HLF:-0.0603697455395;REST:-0.0687743200272;NHLH1,2:-0.0697726293381;GTF2A1,2:-0.0775506817148;HNF1A:-0.079823466158;ALX1:-0.0841806388646;DMAP1_NCOR{1,2}_SMARC:-0.0906000802329;bHLH_family:-0.0989958873054;AHR_ARNT_ARNT2:-0.101133382237;NKX6-1,2:-0.102203036906;AIRE:-0.110584919572;RUNX1..3:-0.130007451733;RREB1:-0.153765853255;ONECUT1,2:-0.165422240971;HMX1:-0.180172038746;CREB1:-0.185390631441;STAT1,3:-0.185841045419;MYFfamily:-0.194323741449;MTF1:-0.199651302946;PAX4:-0.207834135108;HNF4A_NR2F1,2:-0.215422335843;FOSL2:-0.22077136664;HMGA1,2:-0.221262098205;FOXQ1:-0.271685465666;POU2F1..3:-0.273128491739;SOX5:-0.273951554981;RFX1:-0.295087565337;NFKB1_REL_RELA:-0.303014402774;SPI1:-0.307300987088;ZFP161:-0.333439519853;MEF2{A,B,C,D}:-0.334265176061;POU6F1:-0.350312770451;JUN:-0.357768018034;IRF7:-0.398929731986;MAZ:-0.409684139346;NFE2:-0.410339452825;PRRX1,2:-0.418842027464;HOXA9_MEIS1:-0.419149179969;ELF1,2,4:-0.424376395127;FOXM1:-0.444568827864;OCT4_SOX2{dimer}:-0.44700551479;SOX{8,9,10}:-0.463363490106;SPIB:-0.474246434825;FOXO1,3,4:-0.487510736727;PDX1:-0.496491881399;NKX2-1,4:-0.511687360878;CRX:-0.517994663828;MED-1{core}:-0.53489756373;POU1F1:-0.563713630508;NFY{A,B,C}:-0.564276342809;NKX2-3_NKX2-5:-0.583333583334;LMO2:-0.590829332854;SP1:-0.600899184299;ETS1,2:-0.605419423084;NFIL3:-0.605661429673;PAX2:-0.630468009366;TGIF1:-0.656277042497;NANOG:-0.658579511079;BREu{core}:-0.66158738042;ATF5_CREB3:-0.679441843565;FOXP1:-0.686288853425;POU5F1:-0.702110984789;EP300:-0.74651707714;ZBTB16:-0.797312421064;SNAI1..3:-0.814676804576;GATA6:-0.824063803592;MYOD1:-0.836242681283;T:-0.846478813349;ATF2:-0.85194723536;STAT5{A,B}:-0.85943748762;IKZF2:-0.878726260833;TLX2:-0.882130913358;CEBPA,B_DDIT3:-0.886686560788;VSX1,2:-0.910236021573;RFX2..5_RFXANK_RFXAP:-0.922276982721;CUX2:-0.927457290028;ZEB1:-0.938854098185;CDX1,2,4:-0.945853712653;FOXP3:-0.971646437291;PITX1..3:-0.983570551774;FOXN1:-0.9986086924;SOX2:-1.0094555691;ATF4:-1.00975395626;PAX6:-1.0144008606;SREBF1,2:-1.0434925316;ADNP_IRX_SIX_ZHX:-1.11815468125;FOX{D1,D2}:-1.12004125248;BPTF:-1.12566403689;FOXA2:-1.27734846748;RBPJ:-1.4002510174;FOX{F1,F2,J1}:-1.48534075568;RORA:-1.52229815106
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11429-118G7;search_select_hide=table117:FF:11429-118G7
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Preadipocyte - visceral, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12039
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage51 years old adult
sexfemale
age51
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1851
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004752
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12039 CAGE DRX008418 DRR009290
Accession ID Hg19

Library idBAMCTSS
CNhs12039 DRZ000715 DRZ002100
Accession ID Hg38

Library idBAMCTSS
CNhs12039 DRZ012065 DRZ013450
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004752
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.ACTTGA sRNA-Seq DRX037209 DRR041575
Accession ID Hg19

Library idBAMCTSS
SRhi10013.ACTTGA DRZ007217


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.291
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.259
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.199
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0477
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0477
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.833
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.208
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.257
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0908
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.4
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0674
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0908
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.298
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0477
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.141
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.13
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.311
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.335
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.565
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.4
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.474
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.00549
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.663
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12039

Jaspar motifP-value
MA0002.20.518
MA0003.10.212
MA0004.10.739
MA0006.10.401
MA0007.10.22
MA0009.10.547
MA0014.10.562
MA0017.10.825
MA0018.27.93063e-5
MA0019.10.182
MA0024.10.274
MA0025.10.0798
MA0027.10.84
MA0028.10.783
MA0029.10.366
MA0030.10.00137
MA0031.10.00108
MA0035.20.0214
MA0038.10.0385
MA0039.20.0742
MA0040.10.901
MA0041.10.756
MA0042.10.657
MA0043.16.01815e-6
MA0046.10.514
MA0047.20.196
MA0048.10.0397
MA0050.10.767
MA0051.10.695
MA0052.10.24
MA0055.10.182
MA0057.10.157
MA0058.10.59
MA0059.10.134
MA0060.12.92871e-5
MA0061.10.941
MA0062.20.00852
MA0065.20.952
MA0066.10.371
MA0067.10.0298
MA0068.10.988
MA0069.10.359
MA0070.10.391
MA0071.10.337
MA0072.10.407
MA0073.10.958
MA0074.10.168
MA0076.10.403
MA0077.10.348
MA0078.10.819
MA0079.20.939
MA0080.21.39948e-6
MA0081.10.0937
MA0083.10.00645
MA0084.10.329
MA0087.10.89
MA0088.10.0668
MA0090.10.12
MA0091.10.0575
MA0092.10.374
MA0093.10.745
MA0099.20.352
MA0100.10.693
MA0101.10.0348
MA0102.20.00303
MA0103.10.00288
MA0104.20.89
MA0105.10.34
MA0106.10.0486
MA0107.10.0728
MA0108.20.0576
MA0111.10.512
MA0112.20.0202
MA0113.10.648
MA0114.10.261
MA0115.10.635
MA0116.10.033
MA0117.10.378
MA0119.10.329
MA0122.10.232
MA0124.10.141
MA0125.10.231
MA0131.10.417
MA0135.10.356
MA0136.12.28775e-6
MA0137.20.713
MA0138.20.34
MA0139.10.955
MA0140.10.0511
MA0141.10.116
MA0142.10.393
MA0143.10.757
MA0144.10.722
MA0145.10.425
MA0146.10.461
MA0147.10.522
MA0148.10.291
MA0149.10.794
MA0150.10.435
MA0152.10.0144
MA0153.10.145
MA0154.10.398
MA0155.10.54
MA0156.13.46641e-5
MA0157.10.047
MA0159.10.916
MA0160.10.7
MA0162.10.156
MA0163.10.0029
MA0164.10.826
MA0258.10.842
MA0259.10.726



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12039

Novel motifP-value
10.514
100.217
1000.928
1010.233
1020.684
1030.265
1040.911
1050.233
1060.542
1070.183
1080.355
1090.0731
110.235
1100.045
1110.804
1120.108
1130.00689
1140.529
1150.00672
1160.0271
1170.255
1180.935
1190.737
120.455
1200.0973
1210.919
1220.019
1230.00953
1240.566
1250.265
1260.711
1270.731
1280.649
1290.973
130.845
1300.402
1310.288
1320.42
1330.0767
1340.731
1350.904
1360.292
1370.531
1380.567
1390.358
140.0783
1400.545
1410.896
1420.769
1430.213
1440.969
1450.686
1460.424
1470.0552
1480.59
1490.142
150.574
1500.108
1510.799
1520.0187
1530.423
1540.638
1550.237
1560.758
1570.373
1580.00853
1590.169
160.0286
1600.154
1610.522
1620.694
1630.45
1640.253
1650.53
1660.379
1670.368
1680.823
1690.0244
170.271
180.296
190.0198
20.116
200.503
210.0163
220.264
230.597
240.96
250.514
260.259
270.116
280.0869
290.1
30.372
300.181
310.85
323.93155e-8
330.993
340.525
350.71
360.0161
370.0494
380.954
390.0944
40.282
400.143
410.177
420.903
430.78
440.0103
450.972
460.241
470.649
480.483
490.288
50.593
500.447
510.595
520.831
530.116
540.722
550.509
560.89
570.72
580.61
590.0194
60.412
600.905
610.802
620.477
630.631
640.766
650.299
660.509
670.504
680.726
690.2
70.402
700.929
710.167
720.718
730.00925
740.144
750.14
760.819
770.00265
780.471
790.0203
80.046
800.492
810.997
820.658
830.745
840.683
850.78
860.576
870.00747
880.565
890.0645
90.162
900.135
910.831
920.524
930.758
940.666
950.00269
960.393
970.999
980.671
990.0047



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12039


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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