FF:11765-123I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005341 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008577;DRR009449;DRZ000874;DRZ002259;DRZ012224;DRZ013609 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11765-123I1 | |id=FF:11765-123I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000280 | ||
|is_obsolete= | |||
|library_id=CNhs12640 | |||
|library_id_phase_based=2:CNhs12640 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11765 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11765 | |||
|name=tenocyte, donor2 | |name=tenocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12640,LSID952,release012,COMPLETED | |profile_hcage=CNhs12640,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.142142173967197,0,0,0,0,-0.160318030086386,0,0.0375695221156509,-0.140261386609744,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0.423369984257451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.137471744682773,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0509357280732625,0,-0.0969923612426051,0,0,0.186940720721298,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0521760476860644,0,0,0.0466439006880448,-0.0584468268118252,0.124731601506711,0,0.37776633136086,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295718578694969,0,0,0,0.087490614380885,0.148008138413363,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.164999540860188,-0.0980353512377064,0,0,0,0,0,0,0,0,0.37776633136086,0,0,0.130587456075296,0,-0.189801870817614,-0.143515142523472,0.082499770430094,0,0.0883909598559299,0,0.37776633136086,0,0,0,0,0,0.164999540860188,0,0.621752147246082,0,0.79519908975036,0,0,0,0,0.134951773920585,-0.140472690038219,0,0.0530654883130515,0.215940086857026,0,0.0335803347148289,0,0,0.060784670313303,0,0.0441200570664475,0.0822793725367709,-0.0566120472426186,0.175211461752625,0.118194881967808,0,0,0,0.3590729641204,0.486306217753008,0,0,0.214149152450706,0.128473701331996,0,0,1.29147877226031,0,0.197423556952274,0.40319572065586,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27026300489697,0.488994539214863,0,0,0,0,0.114672629942617,0,0,0.00448017540429319,0.0248620119332006,-0.0226074332704641,-0.297318241862406,0,0.369468281395246,0.0328377817773722,0.433158648152894,-0.206215300331541,0.636782495863721,0.436895219234547,0,0.0455929013590677,0.0870746458679561,0.0379310198965779,0.133624557887891,-0.0302447930437535,0.175051760017336,0.176371415557214,0,0,0.0455456411916613,0.0804678541022457,0,0.0828116690998362,0.479262114991139,-0.102943710325446,0.116096947838608,0.268013012845543,0.0348581669068825,0.0596657724898573,0.102609645510527,-0.0796701215357347,0.0817407789907973,0.028136395374293,0.165730357698309,0,0,0.0112304868903387,0.0300710287865097,-0.238059841817819,0,0.0927155327948982,-0.0683442610773682,0,0.0605886443794962,-0.0601668121206729,0,0.306339623488821,0.048099707912982,0,0,0,0,0.454647098925123,-0.0070833265150021,0.543013720445291,-0.232855561555545,0,-0.0275476286414565,0.00136390864814734,-0.108402914672157,0,0.0294026015838419,0.308637201467728,0,0.162013294328887,0,0.011324998599708,0.461793902910514,0.0466439006880448,0.249463203013422,-0.0584468268118252,0.085511202118101,-0.0815037129659317,0.0648669712712708,0.593235394906228,0.076929300124961,0.289639498885572,0,0.0158726900376051,0.136485004272308,0.0377350808596248,0.0658375693652047,0.114323516253597,0.168577763874306,0,0.1088676717876,0,-0.360022933825505,-0.020490554631875,-0.0615230432198262,-0.333567057853453,0.00778621620554348,-0.131975272095655,0.501614607777262,0,-0.0810017596559328,0,0,0.0146324575255488,0.0521760476860644,0.329111590990169,0.1452948912552,0,0.133930715800778,0,0,0.488572390424893,0.34121695684149,0,0.229430385366461,-0.324918566279002,-0.0275230465894157,-0.115971073434934,0.671858008405159,0,0.539769413896161,0,0.284284347934395,-0.321643715883636,0.203167109908315,-0.165136225033511,-0.253326341486756,0,0.227306194748324,0,0,0.106756581969219,0,0.0918693706459964,0,0,0.0925900722519531,0,0,0.082499770430094,0.78418434523486,0.175580577175269,0,0,0,0,0,0,0,0.439638732655984,0.221859664389431,0,-0.0243736242646745,0,0,0,0,0,0,0,0,0.791943126297973,-0.00241317280852993,-0.12301741567642,0,0,0,0,0.411153536230919,-0.203236562094724,0.284284347934395,-0.131862706497632,0,0.227323549462562,0,0,0.0788585510709768,0,0,0,0,0.107269083806524,0.485589677249671,0,0.164999540860188,0,-0.27695440160179,0,0,0,0.0268203230982148,0.00850024880402112,0,0,0.358468046198531,0,0.175708629202396,-0.0815818795468414,0,-0.026473401958326,0.252407850182134,-0.525435995413602,0,0,-0.261347131789888,0,0.147862740564551,-0.0455461020483365,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0.210163948878502,0.0727754842016778,0.244308887936312,0,0,0,0,0,0,0.140893517781285,0.114807143049369,0.082499770430094,0,0,0,0,0,0,0,-0.093659608302382,0,0,0,0,0,-0.0969923612426051,0,0,0,0.284284347934395,-0.280522773219489,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416804548247404,0.0375695221156509,0,0,0,0,0,0,0,0.397024710199068,0,0,0,0,0.170399974225417,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608956417841105,0.0385151669547417,0.164999540860188,-0.000791098582063138,0,0,0.142307654466282,0,0,0,0,0,0,0.195983125434034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0354714087798906,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.00953303937043205,0,0,0,0,0,0,0.142511830613427,0.323264425579612,0.0422203491713632,0,0,0,0.0281141979476391,0,0,0.0591056006929991,0,0.0982221534412868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423369984257451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.85249495855288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171264127655484,0,0,0,0,0,0,0,0,0,0,0.0198710891303295,0,0,0.116777465621134,0,0.199907715704368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,-0.550504042515712,0,0,0,0,0.117362430199269,0,0,0,0,0,0,0,-0.00492872737175907,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306737396458896,0,0,0.319312805036698,0,0,0,0,0,0,0,0,0,0,0,0,0.103679361710062,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.15845577185863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=12.95625 | |rna_weight_ug=12.95625 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.59244206311632e-229!GO:0005737;cytoplasm;6.08926843904565e-174!GO:0043231;intracellular membrane-bound organelle;4.9917765167462e-140!GO:0043227;membrane-bound organelle;9.14143473456807e-140!GO:0043226;organelle;4.62657958967138e-139!GO:0043229;intracellular organelle;1.20914488516383e-138!GO:0044444;cytoplasmic part;4.56494862937553e-134!GO:0044422;organelle part;1.76662061019895e-99!GO:0044446;intracellular organelle part;3.01798545291915e-98!GO:0032991;macromolecular complex;1.15746492239375e-67!GO:0005515;protein binding;5.74514621054361e-67!GO:0044237;cellular metabolic process;2.590708345999e-64!GO:0030529;ribonucleoprotein complex;4.18666979948387e-64!GO:0044238;primary metabolic process;6.48963027170216e-64!GO:0005739;mitochondrion;4.95105547973346e-60!GO:0043170;macromolecule metabolic process;1.3901243489056e-58!GO:0043233;organelle lumen;7.8943882646154e-53!GO:0031974;membrane-enclosed lumen;7.8943882646154e-53!GO:0031090;organelle membrane;3.14485124034929e-46!GO:0003723;RNA binding;6.8635671955572e-46!GO:0044428;nuclear part;8.41589624143994e-45!GO:0019538;protein metabolic process;3.09913534400098e-43!GO:0005840;ribosome;7.9370300301296e-41!GO:0044429;mitochondrial part;3.78267429750435e-39!GO:0005634;nucleus;1.5870000943826e-37!GO:0044260;cellular macromolecule metabolic process;1.5870000943826e-37!GO:0006412;translation;4.0684444933057e-37!GO:0016043;cellular component organization and biogenesis;9.95667157619923e-37!GO:0003735;structural constituent of ribosome;1.79825464129133e-36!GO:0015031;protein transport;3.31427695362863e-36!GO:0044267;cellular protein metabolic process;4.10917262094189e-36!GO:0005829;cytosol;1.70487233800884e-35!GO:0033036;macromolecule localization;1.98170700640767e-35!GO:0045184;establishment of protein localization;1.75410290934641e-34!GO:0008104;protein localization;1.74811149779792e-33!GO:0043234;protein complex;3.8105371270388e-33!GO:0033279;ribosomal subunit;3.94614792154184e-33!GO:0009058;biosynthetic process;9.82851503840238e-32!GO:0009059;macromolecule biosynthetic process;3.02874367115038e-31!GO:0006396;RNA processing;3.84410507410035e-31!GO:0031967;organelle envelope;7.85338018136982e-31!GO:0031975;envelope;1.71781414319445e-30!GO:0044249;cellular biosynthetic process;2.90074132777871e-28!GO:0031981;nuclear lumen;3.26233544735204e-28!GO:0016071;mRNA metabolic process;6.47763157468816e-28!GO:0046907;intracellular transport;2.04819958164295e-27!GO:0005740;mitochondrial envelope;6.56253462504245e-27!GO:0008380;RNA splicing;8.54148484844374e-26!GO:0031966;mitochondrial membrane;1.82174075956369e-25!GO:0043283;biopolymer metabolic process;2.38250336294449e-25!GO:0006886;intracellular protein transport;1.66354144636876e-24!GO:0010467;gene expression;2.03063402487955e-24!GO:0065003;macromolecular complex assembly;2.56056861202166e-24!GO:0019866;organelle inner membrane;2.64720692972307e-24!GO:0005783;endoplasmic reticulum;6.67246328543905e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.75354563446776e-23!GO:0005743;mitochondrial inner membrane;2.43437007369028e-23!GO:0006397;mRNA processing;2.49199919202676e-23!GO:0022607;cellular component assembly;6.34815386545673e-22!GO:0006119;oxidative phosphorylation;1.20625139920129e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.10611424942747e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.19551549551278e-19!GO:0005681;spliceosome;2.76014646910372e-18!GO:0044455;mitochondrial membrane part;4.00936761092803e-18!GO:0005654;nucleoplasm;1.05586496980946e-17!GO:0015934;large ribosomal subunit;1.10076030778276e-17!GO:0006457;protein folding;1.2690784082531e-17!GO:0044432;endoplasmic reticulum part;2.02823265456836e-17!GO:0044445;cytosolic part;2.50589063917162e-17!GO:0048770;pigment granule;4.19073233115885e-17!GO:0042470;melanosome;4.19073233115885e-17!GO:0012505;endomembrane system;6.35236802140347e-17!GO:0015935;small ribosomal subunit;2.29491959198529e-16!GO:0005794;Golgi apparatus;2.44582105115387e-16!GO:0005746;mitochondrial respiratory chain;2.67264096720412e-16!GO:0051649;establishment of cellular localization;7.68015242544078e-16!GO:0051641;cellular localization;1.00703396781854e-15!GO:0043228;non-membrane-bound organelle;2.1603984303053e-15!GO:0043232;intracellular non-membrane-bound organelle;2.1603984303053e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.25710720153707e-15!GO:0044451;nucleoplasm part;2.73924697970021e-15!GO:0031980;mitochondrial lumen;3.47402099094311e-15!GO:0005759;mitochondrial matrix;3.47402099094311e-15!GO:0006996;organelle organization and biogenesis;5.15282776125595e-15!GO:0008134;transcription factor binding;2.62218925015034e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.59202368096718e-14!GO:0003954;NADH dehydrogenase activity;4.59202368096718e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.59202368096718e-14!GO:0051186;cofactor metabolic process;6.93023365915335e-14!GO:0000502;proteasome complex (sensu Eukaryota);6.93186925500463e-14!GO:0022618;protein-RNA complex assembly;1.0579028130155e-13!GO:0043285;biopolymer catabolic process;1.58868995853946e-13!GO:0016874;ligase activity;3.54025117911206e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.15196207097563e-13!GO:0006512;ubiquitin cycle;5.15441632377345e-13!GO:0006605;protein targeting;5.89092597341842e-13!GO:0044265;cellular macromolecule catabolic process;6.25380733812286e-13!GO:0016462;pyrophosphatase activity;7.46145599411952e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.53608986991439e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.07758285736877e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.17274880987853e-12!GO:0005761;mitochondrial ribosome;1.69445799171336e-12!GO:0000313;organellar ribosome;1.69445799171336e-12!GO:0016491;oxidoreductase activity;1.79528351633692e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.1772809418024e-12!GO:0045271;respiratory chain complex I;2.1772809418024e-12!GO:0005747;mitochondrial respiratory chain complex I;2.1772809418024e-12!GO:0044248;cellular catabolic process;2.20481711963271e-12!GO:0009057;macromolecule catabolic process;2.21373740107848e-12!GO:0048193;Golgi vesicle transport;2.35987114820743e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.2486786483268e-12!GO:0042773;ATP synthesis coupled electron transport;3.2486786483268e-12!GO:0016192;vesicle-mediated transport;3.54721434914846e-12!GO:0017111;nucleoside-triphosphatase activity;3.54721434914846e-12!GO:0005793;ER-Golgi intermediate compartment;5.66702156287966e-12!GO:0051082;unfolded protein binding;6.31545757856384e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.41441251237479e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.6409979009338e-12!GO:0005789;endoplasmic reticulum membrane;1.43179926344883e-11!GO:0006259;DNA metabolic process;1.46630100063195e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.62982063343241e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.94542691917789e-11!GO:0030163;protein catabolic process;1.94542691917789e-11!GO:0008135;translation factor activity, nucleic acid binding;2.36679170424627e-11!GO:0005730;nucleolus;2.90251742992055e-11!GO:0019941;modification-dependent protein catabolic process;3.21544156404438e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.21544156404438e-11!GO:0044257;cellular protein catabolic process;3.56571504277331e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.60733911929101e-11!GO:0006732;coenzyme metabolic process;5.15899033121321e-11!GO:0012501;programmed cell death;5.31718651247343e-11!GO:0006915;apoptosis;1.01931950583418e-10!GO:0009055;electron carrier activity;1.1174847325173e-10!GO:0000166;nucleotide binding;2.09080073488179e-10!GO:0008219;cell death;6.79047630053174e-10!GO:0016265;death;6.79047630053174e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.26162761437228e-09!GO:0000375;RNA splicing, via transesterification reactions;1.26162761437228e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.26162761437228e-09!GO:0003676;nucleic acid binding;1.66697241897936e-09!GO:0005773;vacuole;1.8170934428585e-09!GO:0048523;negative regulation of cellular process;3.07467364333222e-09!GO:0006446;regulation of translational initiation;5.42148815421719e-09!GO:0016070;RNA metabolic process;5.86493412624171e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.18530927798338e-09!GO:0006461;protein complex assembly;8.16416038595958e-09!GO:0005768;endosome;8.43810549656989e-09!GO:0006413;translational initiation;1.11715415868043e-08!GO:0043412;biopolymer modification;1.21766585856567e-08!GO:0005788;endoplasmic reticulum lumen;1.68522294569846e-08!GO:0003743;translation initiation factor activity;1.84979214496205e-08!GO:0003712;transcription cofactor activity;1.99519372986693e-08!GO:0006091;generation of precursor metabolites and energy;2.4260099566484e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65832632350434e-08!GO:0045333;cellular respiration;2.72492547786587e-08!GO:0009060;aerobic respiration;2.72800678758938e-08!GO:0006913;nucleocytoplasmic transport;2.94502078205672e-08!GO:0008361;regulation of cell size;3.00981304535125e-08!GO:0009056;catabolic process;3.00981304535125e-08!GO:0000323;lytic vacuole;3.07041450683504e-08!GO:0005764;lysosome;3.07041450683504e-08!GO:0016049;cell growth;3.44898115795535e-08!GO:0009259;ribonucleotide metabolic process;3.52628141617494e-08!GO:0009150;purine ribonucleotide metabolic process;5.22673864655564e-08!GO:0008639;small protein conjugating enzyme activity;5.25467226477669e-08!GO:0051169;nuclear transport;5.28848831346169e-08!GO:0006464;protein modification process;5.34711177080084e-08!GO:0017038;protein import;6.72461643391869e-08!GO:0048519;negative regulation of biological process;9.47212377358021e-08!GO:0007049;cell cycle;9.48296794686109e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.54178875511976e-08!GO:0004842;ubiquitin-protein ligase activity;9.54758536051553e-08!GO:0015986;ATP synthesis coupled proton transport;9.54758536051553e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.54758536051553e-08!GO:0042981;regulation of apoptosis;1.11734705072408e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.25391664041636e-07!GO:0006163;purine nucleotide metabolic process;1.25875067404364e-07!GO:0001558;regulation of cell growth;1.30999016878041e-07!GO:0016604;nuclear body;1.32423834225322e-07!GO:0019787;small conjugating protein ligase activity;1.32423834225322e-07!GO:0008565;protein transporter activity;1.53189956722118e-07!GO:0043067;regulation of programmed cell death;1.62989722293056e-07!GO:0006366;transcription from RNA polymerase II promoter;1.86215432699623e-07!GO:0009260;ribonucleotide biosynthetic process;1.94233165980699e-07!GO:0017076;purine nucleotide binding;2.49029110560807e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.53068864450034e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.71721905487705e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.71721905487705e-07!GO:0009141;nucleoside triphosphate metabolic process;2.78256360858771e-07!GO:0044440;endosomal part;3.1915048928311e-07!GO:0010008;endosome membrane;3.1915048928311e-07!GO:0006164;purine nucleotide biosynthetic process;3.2778445122575e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.30833234377135e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.48885738491436e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.48885738491436e-07!GO:0003924;GTPase activity;3.90523681706114e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.29769744352193e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.48497044978773e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.48497044978773e-07!GO:0044431;Golgi apparatus part;5.22182068013639e-07!GO:0016881;acid-amino acid ligase activity;6.6076398089262e-07!GO:0006974;response to DNA damage stimulus;6.75711317549493e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.2018220002051e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.26308047694622e-07!GO:0051246;regulation of protein metabolic process;7.30246709264313e-07!GO:0019829;cation-transporting ATPase activity;7.97148188376449e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.23543021812975e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.54624717960993e-07!GO:0030120;vesicle coat;1.15647445421779e-06!GO:0030662;coated vesicle membrane;1.15647445421779e-06!GO:0048475;coated membrane;1.15647445421779e-06!GO:0030117;membrane coat;1.15647445421779e-06!GO:0006099;tricarboxylic acid cycle;1.2290249940772e-06!GO:0046356;acetyl-CoA catabolic process;1.2290249940772e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.23233752129466e-06!GO:0046034;ATP metabolic process;1.25914536351242e-06!GO:0006754;ATP biosynthetic process;1.2780826711625e-06!GO:0006753;nucleoside phosphate metabolic process;1.2780826711625e-06!GO:0032553;ribonucleotide binding;1.29259937812557e-06!GO:0032555;purine ribonucleotide binding;1.29259937812557e-06!GO:0043069;negative regulation of programmed cell death;1.47257193386591e-06!GO:0051187;cofactor catabolic process;1.51815779474444e-06!GO:0043066;negative regulation of apoptosis;1.63398071943332e-06!GO:0051188;cofactor biosynthetic process;1.67645824138749e-06!GO:0043687;post-translational protein modification;1.68384845488001e-06!GO:0050794;regulation of cellular process;1.72239202941239e-06!GO:0016607;nuclear speck;3.04544717473125e-06!GO:0051789;response to protein stimulus;3.67272024570699e-06!GO:0006986;response to unfolded protein;3.67272024570699e-06!GO:0006084;acetyl-CoA metabolic process;3.70207906734297e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.70207906734297e-06!GO:0042254;ribosome biogenesis and assembly;3.70207906734297e-06!GO:0004298;threonine endopeptidase activity;3.86303387985615e-06!GO:0009109;coenzyme catabolic process;3.96970313524834e-06!GO:0030532;small nuclear ribonucleoprotein complex;4.76590336865865e-06!GO:0051726;regulation of cell cycle;5.13081118165343e-06!GO:0005770;late endosome;5.20613287382747e-06!GO:0000074;regulation of progression through cell cycle;5.99602010147173e-06!GO:0040008;regulation of growth;6.44694131436849e-06!GO:0006916;anti-apoptosis;9.14551709916741e-06!GO:0045259;proton-transporting ATP synthase complex;1.03635048124439e-05!GO:0045786;negative regulation of progression through cell cycle;1.08258242810411e-05!GO:0005635;nuclear envelope;1.15112166221409e-05!GO:0031965;nuclear membrane;1.21739220324469e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.2388767488441e-05!GO:0042623;ATPase activity, coupled;1.30445145965601e-05!GO:0022402;cell cycle process;1.32173837602409e-05!GO:0009719;response to endogenous stimulus;1.34596601751345e-05!GO:0009117;nucleotide metabolic process;1.53115399273063e-05!GO:0044262;cellular carbohydrate metabolic process;1.78270067719134e-05!GO:0000139;Golgi membrane;1.92645705264411e-05!GO:0031324;negative regulation of cellular metabolic process;2.05704013366315e-05!GO:0051170;nuclear import;2.23270329439585e-05!GO:0016887;ATPase activity;2.24599567933693e-05!GO:0008654;phospholipid biosynthetic process;2.43493104586143e-05!GO:0000151;ubiquitin ligase complex;2.72628918277425e-05!GO:0044453;nuclear membrane part;2.9608044276823e-05!GO:0006606;protein import into nucleus;3.03531127472918e-05!GO:0007243;protein kinase cascade;3.40604937408897e-05!GO:0005762;mitochondrial large ribosomal subunit;3.73177051578039e-05!GO:0000315;organellar large ribosomal subunit;3.73177051578039e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.82846861030007e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.04203520950192e-05!GO:0006281;DNA repair;4.21252687361274e-05!GO:0005769;early endosome;4.37948703761802e-05!GO:0031988;membrane-bound vesicle;4.64658496904535e-05!GO:0009108;coenzyme biosynthetic process;4.71961373800375e-05!GO:0016564;transcription repressor activity;4.94945098267379e-05!GO:0006399;tRNA metabolic process;5.12595951395252e-05!GO:0016853;isomerase activity;5.36465516655672e-05!GO:0007005;mitochondrion organization and biogenesis;5.48268901217164e-05!GO:0031982;vesicle;5.65106267122415e-05!GO:0006613;cotranslational protein targeting to membrane;5.81493772127788e-05!GO:0003714;transcription corepressor activity;5.85925199949244e-05!GO:0030133;transport vesicle;5.88978402511453e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.11516734848049e-05!GO:0004812;aminoacyl-tRNA ligase activity;6.11516734848049e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.11516734848049e-05!GO:0005667;transcription factor complex;6.34809155427687e-05!GO:0006752;group transfer coenzyme metabolic process;6.42402042545027e-05!GO:0031410;cytoplasmic vesicle;6.89537235154742e-05!GO:0065002;intracellular protein transport across a membrane;7.15376885171797e-05!GO:0000245;spliceosome assembly;7.2686140032865e-05!GO:0005525;GTP binding;7.28739685230625e-05!GO:0031252;leading edge;7.62701518227772e-05!GO:0030554;adenyl nucleotide binding;8.13153258249373e-05!GO:0003697;single-stranded DNA binding;8.15751070958863e-05!GO:0045454;cell redox homeostasis;8.15751070958863e-05!GO:0050789;regulation of biological process;8.7759180120464e-05!GO:0043038;amino acid activation;8.99809980032039e-05!GO:0006418;tRNA aminoacylation for protein translation;8.99809980032039e-05!GO:0043039;tRNA aminoacylation;8.99809980032039e-05!GO:0048522;positive regulation of cellular process;9.38482421162811e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.93366205372107e-05!GO:0005905;coated pit;0.000107366364615106!GO:0043566;structure-specific DNA binding;0.000110032536407415!GO:0032446;protein modification by small protein conjugation;0.000111085583218072!GO:0030867;rough endoplasmic reticulum membrane;0.00012402865905128!GO:0016567;protein ubiquitination;0.000124184295869754!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000135251873230125!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000159071730329157!GO:0009892;negative regulation of metabolic process;0.000159071730329157!GO:0065004;protein-DNA complex assembly;0.000166332418739359!GO:0016859;cis-trans isomerase activity;0.000187778673989566!GO:0008026;ATP-dependent helicase activity;0.000187778673989566!GO:0016787;hydrolase activity;0.000191701917935768!GO:0019867;outer membrane;0.000226927938190073!GO:0005798;Golgi-associated vesicle;0.000231206627986441!GO:0033116;ER-Golgi intermediate compartment membrane;0.000240836607337712!GO:0005791;rough endoplasmic reticulum;0.000255935376565913!GO:0030036;actin cytoskeleton organization and biogenesis;0.000256113606862484!GO:0016044;membrane organization and biogenesis;0.000267203814913041!GO:0005524;ATP binding;0.000285641877444644!GO:0006979;response to oxidative stress;0.000287873707196506!GO:0031968;organelle outer membrane;0.000302529384584462!GO:0032559;adenyl ribonucleotide binding;0.000305988834965877!GO:0006612;protein targeting to membrane;0.000310908825011666!GO:0006323;DNA packaging;0.000325246892584715!GO:0004386;helicase activity;0.000362171161061161!GO:0003713;transcription coactivator activity;0.000374399497621736!GO:0032561;guanyl ribonucleotide binding;0.000382496118437693!GO:0019001;guanyl nucleotide binding;0.000382496118437693!GO:0000314;organellar small ribosomal subunit;0.000435391597620696!GO:0005763;mitochondrial small ribosomal subunit;0.000435391597620696!GO:0006364;rRNA processing;0.000443273826615012!GO:0005643;nuclear pore;0.00046564665097554!GO:0006118;electron transport;0.000505234117235889!GO:0005741;mitochondrial outer membrane;0.000535880399936178!GO:0043021;ribonucleoprotein binding;0.000556242374610871!GO:0016072;rRNA metabolic process;0.000665140715226274!GO:0006793;phosphorus metabolic process;0.000666294160159299!GO:0006796;phosphate metabolic process;0.000666294160159299!GO:0046474;glycerophospholipid biosynthetic process;0.000683605203651789!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00076317451922144!GO:0016481;negative regulation of transcription;0.000767394664515677!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000793974746606131!GO:0019843;rRNA binding;0.000863835308528091!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000926775432423659!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000950470592630919!GO:0009967;positive regulation of signal transduction;0.000980417954452095!GO:0000278;mitotic cell cycle;0.000984593533762932!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103798207118445!GO:0050662;coenzyme binding;0.00103888688763756!GO:0051920;peroxiredoxin activity;0.00105069309779491!GO:0005885;Arp2/3 protein complex;0.0010657279415981!GO:0016563;transcription activator activity;0.00108270049395905!GO:0043623;cellular protein complex assembly;0.00110719782410165!GO:0006333;chromatin assembly or disassembly;0.00112975542613578!GO:0004576;oligosaccharyl transferase activity;0.00114661822811511!GO:0003724;RNA helicase activity;0.00115649088119741!GO:0043284;biopolymer biosynthetic process;0.00116117396287951!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00117997229436962!GO:0006260;DNA replication;0.00128997448547533!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00140684382006717!GO:0048518;positive regulation of biological process;0.00140920984145926!GO:0030029;actin filament-based process;0.00148401074615388!GO:0046930;pore complex;0.00152994946443309!GO:0008250;oligosaccharyl transferase complex;0.00159028609036112!GO:0051276;chromosome organization and biogenesis;0.00181057547598354!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00203531153490107!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00209955170458955!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00210806182264963!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00210806182264963!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00210806182264963!GO:0016310;phosphorylation;0.0021828306521914!GO:0050657;nucleic acid transport;0.00232306943410015!GO:0051236;establishment of RNA localization;0.00232306943410015!GO:0050658;RNA transport;0.00232306943410015!GO:0005520;insulin-like growth factor binding;0.0023758744212763!GO:0030663;COPI coated vesicle membrane;0.00246809238158044!GO:0030126;COPI vesicle coat;0.00246809238158044!GO:0006414;translational elongation;0.00251015968572228!GO:0006403;RNA localization;0.00256205483731699!GO:0006950;response to stress;0.00261131164971759!GO:0006509;membrane protein ectodomain proteolysis;0.00262349698464832!GO:0033619;membrane protein proteolysis;0.00262349698464832!GO:0016779;nucleotidyltransferase activity;0.00262349698464832!GO:0043681;protein import into mitochondrion;0.00271795905489783!GO:0000785;chromatin;0.00285702508926669!GO:0022890;inorganic cation transmembrane transporter activity;0.00295639672342966!GO:0005048;signal sequence binding;0.00314256290253458!GO:0046467;membrane lipid biosynthetic process;0.00317633291643977!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00322360839960966!GO:0031902;late endosome membrane;0.00327742742820565!GO:0051427;hormone receptor binding;0.00329062727570978!GO:0006354;RNA elongation;0.00330522731712755!GO:0007050;cell cycle arrest;0.00331242216943158!GO:0008154;actin polymerization and/or depolymerization;0.00354773572506352!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0036884852039987!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00370525654581401!GO:0043488;regulation of mRNA stability;0.00384582178385822!GO:0043487;regulation of RNA stability;0.00384582178385822!GO:0046489;phosphoinositide biosynthetic process;0.00390662901699238!GO:0030118;clathrin coat;0.00391939645879009!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00393568779423002!GO:0003729;mRNA binding;0.00398067244054103!GO:0007040;lysosome organization and biogenesis;0.00415038597563972!GO:0007264;small GTPase mediated signal transduction;0.00439886612509598!GO:0006650;glycerophospholipid metabolic process;0.00445322960776448!GO:0019899;enzyme binding;0.00468827913203532!GO:0005774;vacuolar membrane;0.00468827913203532!GO:0005694;chromosome;0.00512270555144198!GO:0030132;clathrin coat of coated pit;0.00533021165862555!GO:0051252;regulation of RNA metabolic process;0.00552314992887601!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00552314992887601!GO:0015002;heme-copper terminal oxidase activity;0.00552314992887601!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00552314992887601!GO:0004129;cytochrome-c oxidase activity;0.00552314992887601!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00555893486518769!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00555893486518769!GO:0018196;peptidyl-asparagine modification;0.00568349285214222!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00568349285214222!GO:0035257;nuclear hormone receptor binding;0.00568349285214222!GO:0007033;vacuole organization and biogenesis;0.00572221950391995!GO:0043065;positive regulation of apoptosis;0.00583597988020831!GO:0006334;nucleosome assembly;0.00598940903963408!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00608319958289633!GO:0030027;lamellipodium;0.0061215828141835!GO:0016740;transferase activity;0.00612555946169875!GO:0030137;COPI-coated vesicle;0.00630039079746385!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00661028853121842!GO:0015399;primary active transmembrane transporter activity;0.00661028853121842!GO:0016568;chromatin modification;0.00667954010026308!GO:0051287;NAD binding;0.00691439076888085!GO:0051329;interphase of mitotic cell cycle;0.00691439076888085!GO:0004177;aminopeptidase activity;0.00720857709311764!GO:0006897;endocytosis;0.00730971777412864!GO:0010324;membrane invagination;0.00730971777412864!GO:0065009;regulation of a molecular function;0.00734618887757947!GO:0006402;mRNA catabolic process;0.00744685402444587!GO:0048468;cell development;0.00748970244515205!GO:0043068;positive regulation of programmed cell death;0.00753484175387382!GO:0016197;endosome transport;0.00774220602587324!GO:0019752;carboxylic acid metabolic process;0.0078397292451811!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00787949529114447!GO:0048500;signal recognition particle;0.00810850781891179!GO:0006082;organic acid metabolic process;0.00816949502913581!GO:0030041;actin filament polymerization;0.00825629141453252!GO:0005813;centrosome;0.008355440729343!GO:0030119;AP-type membrane coat adaptor complex;0.00843100888972954!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00867614125345535!GO:0008186;RNA-dependent ATPase activity;0.00867758038256376!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00897856662935407!GO:0051325;interphase;0.00918976566427664!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00918976566427664!GO:0065007;biological regulation;0.00944667316423956!GO:0031418;L-ascorbic acid binding;0.00954916511547589!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00954916511547589!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00954916511547589!GO:0006383;transcription from RNA polymerase III promoter;0.0098758660150941!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0100252674250923!GO:0030176;integral to endoplasmic reticulum membrane;0.0100279842581098!GO:0031497;chromatin assembly;0.0100279842581098!GO:0006740;NADPH regeneration;0.0100279842581098!GO:0006098;pentose-phosphate shunt;0.0100279842581098!GO:0045892;negative regulation of transcription, DNA-dependent;0.0101073540776193!GO:0030658;transport vesicle membrane;0.0101324101308715!GO:0008610;lipid biosynthetic process;0.0112351584615044!GO:0003746;translation elongation factor activity;0.0112351584615044!GO:0015992;proton transport;0.0112351584615044!GO:0006818;hydrogen transport;0.0112810694193146!GO:0048471;perinuclear region of cytoplasm;0.0113384257538625!GO:0006891;intra-Golgi vesicle-mediated transport;0.0115819650825115!GO:0044437;vacuolar part;0.0116036801157746!GO:0051101;regulation of DNA binding;0.0116303467575695!GO:0003711;transcription elongation regulator activity;0.0116982626494974!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.011862994191804!GO:0048487;beta-tubulin binding;0.011862994191804!GO:0031901;early endosome membrane;0.0119452940709657!GO:0005975;carbohydrate metabolic process;0.0119750424319426!GO:0005765;lysosomal membrane;0.0120566610192285!GO:0008430;selenium binding;0.0120947437998109!GO:0017166;vinculin binding;0.0130022022152165!GO:0009165;nucleotide biosynthetic process;0.0131008284530052!GO:0016408;C-acyltransferase activity;0.0131008284530052!GO:0005815;microtubule organizing center;0.0132030546218393!GO:0005869;dynactin complex;0.0133275346884445!GO:0008092;cytoskeletal protein binding;0.0134230873658578!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0137106397585826!GO:0044420;extracellular matrix part;0.0140954353273265!GO:0003899;DNA-directed RNA polymerase activity;0.0147035590214111!GO:0001527;microfibril;0.0147791149059679!GO:0008180;signalosome;0.0149757413911301!GO:0051168;nuclear export;0.0149807058124745!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.015141491875361!GO:0045047;protein targeting to ER;0.015141491875361!GO:0007160;cell-matrix adhesion;0.0151838837081343!GO:0005159;insulin-like growth factor receptor binding;0.0152230928449782!GO:0030984;kininogen binding;0.0152924055511884!GO:0004213;cathepsin B activity;0.0152924055511884!GO:0050811;GABA receptor binding;0.0153193511802352!GO:0030145;manganese ion binding;0.0153460587276763!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0153927407182132!GO:0007034;vacuolar transport;0.0156747545395505!GO:0006635;fatty acid beta-oxidation;0.0158088669005812!GO:0030131;clathrin adaptor complex;0.0159577759995278!GO:0051028;mRNA transport;0.015980378616728!GO:0044427;chromosomal part;0.0162763055597917!GO:0031589;cell-substrate adhesion;0.0165285118478199!GO:0006790;sulfur metabolic process;0.0165285118478199!GO:0006401;RNA catabolic process;0.0171971014332565!GO:0006506;GPI anchor biosynthetic process;0.0172315652576848!GO:0015630;microtubule cytoskeleton;0.0172429642177675!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0173689049061525!GO:0004784;superoxide dismutase activity;0.0173689049061525!GO:0035035;histone acetyltransferase binding;0.0175219866400642!GO:0031543;peptidyl-proline dioxygenase activity;0.0177367266151627!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0178106782789989!GO:0033043;regulation of organelle organization and biogenesis;0.0178106782789989!GO:0045792;negative regulation of cell size;0.0178106782789989!GO:0030134;ER to Golgi transport vesicle;0.0178494871592666!GO:0046483;heterocycle metabolic process;0.0180789868051521!GO:0043433;negative regulation of transcription factor activity;0.018272771689061!GO:0019798;procollagen-proline dioxygenase activity;0.0187629673746041!GO:0003690;double-stranded DNA binding;0.0191170218751044!GO:0006892;post-Golgi vesicle-mediated transport;0.0192137203737357!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0195843076761664!GO:0008632;apoptotic program;0.0196650291096894!GO:0030308;negative regulation of cell growth;0.019845857098663!GO:0004004;ATP-dependent RNA helicase activity;0.019845857098663!GO:0003756;protein disulfide isomerase activity;0.0198811634980224!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0198811634980224!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0198815314843139!GO:0008484;sulfuric ester hydrolase activity;0.0198815314843139!GO:0008312;7S RNA binding;0.0199648460692472!GO:0030032;lamellipodium biogenesis;0.0200739122791619!GO:0019222;regulation of metabolic process;0.02024825239516!GO:0007006;mitochondrial membrane organization and biogenesis;0.0211275278699816!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0212077538823825!GO:0051087;chaperone binding;0.0213635220834944!GO:0001726;ruffle;0.0214132744961587!GO:0006643;membrane lipid metabolic process;0.021674226180272!GO:0051128;regulation of cellular component organization and biogenesis;0.0218254263368494!GO:0031529;ruffle organization and biogenesis;0.0219329042487983!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0221712667040617!GO:0030384;phosphoinositide metabolic process;0.0225895173156764!GO:0006778;porphyrin metabolic process;0.0228887785988546!GO:0033013;tetrapyrrole metabolic process;0.0228887785988546!GO:0031072;heat shock protein binding;0.0229975328435694!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0234596072266986!GO:0046519;sphingoid metabolic process;0.0234982319773779!GO:0006595;polyamine metabolic process;0.0234982319773779!GO:0043492;ATPase activity, coupled to movement of substances;0.0234982319773779!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0234982319773779!GO:0030660;Golgi-associated vesicle membrane;0.0237022167791047!GO:0051540;metal cluster binding;0.0237531208011674!GO:0051536;iron-sulfur cluster binding;0.0237531208011674!GO:0030518;steroid hormone receptor signaling pathway;0.0238408689473835!GO:0006505;GPI anchor metabolic process;0.0242041297764564!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0242892487116149!GO:0051098;regulation of binding;0.0246233618218069!GO:0016126;sterol biosynthetic process;0.0256452048776652!GO:0005862;muscle thin filament tropomyosin;0.0263289588933231!GO:0000902;cell morphogenesis;0.0263289588933231!GO:0032989;cellular structure morphogenesis;0.0263289588933231!GO:0030880;RNA polymerase complex;0.0274425904366582!GO:0009116;nucleoside metabolic process;0.0275639037174321!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0281542644520543!GO:0030833;regulation of actin filament polymerization;0.0282262822433227!GO:0030127;COPII vesicle coat;0.0284259478269335!GO:0012507;ER to Golgi transport vesicle membrane;0.0284259478269335!GO:0016363;nuclear matrix;0.0288218234537081!GO:0008139;nuclear localization sequence binding;0.0289214049478745!GO:0030125;clathrin vesicle coat;0.029423318985059!GO:0030665;clathrin coated vesicle membrane;0.029423318985059!GO:0015631;tubulin binding;0.029423318985059!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0298500375449932!GO:0006497;protein amino acid lipidation;0.0302291409160878!GO:0006672;ceramide metabolic process;0.0302531256554741!GO:0043022;ribosome binding;0.0307383543893456!GO:0030503;regulation of cell redox homeostasis;0.0316844435173989!GO:0006626;protein targeting to mitochondrion;0.0323220550529288!GO:0005684;U2-dependent spliceosome;0.0323490227358934!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0326547003217038!GO:0001872;zymosan binding;0.0333137696662186!GO:0001878;response to yeast;0.0333137696662186!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0333998759843359!GO:0042802;identical protein binding;0.0334713895416821!GO:0005581;collagen;0.0337989374008427!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0343469414530514!GO:0030521;androgen receptor signaling pathway;0.0351720818167524!GO:0006749;glutathione metabolic process;0.0351720818167524!GO:0005583;fibrillar collagen;0.0359691918202464!GO:0008147;structural constituent of bone;0.0362253461552837!GO:0016860;intramolecular oxidoreductase activity;0.0363174585811252!GO:0006917;induction of apoptosis;0.0369747359826894!GO:0042168;heme metabolic process;0.0377391857154664!GO:0009081;branched chain family amino acid metabolic process;0.0380088803597556!GO:0006352;transcription initiation;0.0384020090421428!GO:0048037;cofactor binding;0.03849754079849!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0385117365356551!GO:0046813;virion attachment, binding of host cell surface receptor;0.0385117365356551!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0385117365356551!GO:0006693;prostaglandin metabolic process;0.0387890523586134!GO:0006692;prostanoid metabolic process;0.0387890523586134!GO:0051059;NF-kappaB binding;0.0396654051057836!GO:0031625;ubiquitin protein ligase binding;0.0397976243132107!GO:0007010;cytoskeleton organization and biogenesis;0.0398349345348328!GO:0006644;phospholipid metabolic process;0.0398349345348328!GO:0019838;growth factor binding;0.0399035716077538!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0401083308381203!GO:0006839;mitochondrial transport;0.0402391114424147!GO:0045926;negative regulation of growth;0.0411022571365112!GO:0042158;lipoprotein biosynthetic process;0.0413797419234942!GO:0006739;NADP metabolic process;0.0421253902477533!GO:0032507;maintenance of cellular protein localization;0.0432209166247757!GO:0031272;regulation of pseudopodium formation;0.0432453850138997!GO:0031269;pseudopodium formation;0.0432453850138997!GO:0031344;regulation of cell projection organization and biogenesis;0.0432453850138997!GO:0031268;pseudopodium organization and biogenesis;0.0432453850138997!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0432453850138997!GO:0031274;positive regulation of pseudopodium formation;0.0432453850138997!GO:0007041;lysosomal transport;0.0437487377437542!GO:0051235;maintenance of localization;0.0441872603168629!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.044326040805495!GO:0022403;cell cycle phase;0.0447559571417055!GO:0051539;4 iron, 4 sulfur cluster binding;0.0457905764201589!GO:0000096;sulfur amino acid metabolic process;0.0457927808241382!GO:0005777;peroxisome;0.0459262121852701!GO:0042579;microbody;0.0459262121852701!GO:0012502;induction of programmed cell death;0.0461551879504141!GO:0000118;histone deacetylase complex;0.0464766873847069!GO:0007021;tubulin folding;0.0474121886411842!GO:0016272;prefoldin complex;0.0479673248048308!GO:0005586;collagen type III;0.0479673248048308!GO:0007265;Ras protein signal transduction;0.0487773865896791!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0488061713033031!GO:0010257;NADH dehydrogenase complex assembly;0.0488061713033031!GO:0033108;mitochondrial respiratory chain complex assembly;0.0488061713033031!GO:0006289;nucleotide-excision repair;0.0488061713033031!GO:0000059;protein import into nucleus, docking;0.04935523888797!GO:0030911;TPR domain binding;0.049604176799899!GO:0004228;gelatinase A activity;0.049604176799899!GO:0001955;blood vessel maturation;0.049604176799899 | |||
|sample_id=11765 | |sample_id=11765 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=tendon | |sample_tissue=tendon | ||
|top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613 | |top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11765-123I1;search_select_hide=table117:FF:11765-123I1 | |||
}} | }} | ||
Latest revision as of 18:18, 4 June 2020
| Name: | tenocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12640 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12640
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12640
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.745 |
| 10 | 10 | 0.837 |
| 100 | 100 | 0.945 |
| 101 | 101 | 0.325 |
| 102 | 102 | 0.0335 |
| 103 | 103 | 0.368 |
| 104 | 104 | 0.918 |
| 105 | 105 | 0.0723 |
| 106 | 106 | 0.464 |
| 107 | 107 | 0.112 |
| 108 | 108 | 0.396 |
| 109 | 109 | 0.47 |
| 11 | 11 | 0.603 |
| 110 | 110 | 0.418 |
| 111 | 111 | 0.725 |
| 112 | 112 | 0.51 |
| 113 | 113 | 0.916 |
| 114 | 114 | 0.399 |
| 115 | 115 | 0.00535 |
| 116 | 116 | 0.085 |
| 117 | 117 | 0.596 |
| 118 | 118 | 0.85 |
| 119 | 119 | 0.523 |
| 12 | 12 | 0.199 |
| 120 | 120 | 0.954 |
| 121 | 121 | 0.534 |
| 122 | 122 | 0.128 |
| 123 | 123 | 0.00251 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.571 |
| 126 | 126 | 0.68 |
| 127 | 127 | 0.645 |
| 128 | 128 | 0.237 |
| 129 | 129 | 0.921 |
| 13 | 13 | 0.684 |
| 130 | 130 | 0.601 |
| 131 | 131 | 0.971 |
| 132 | 132 | 0.0761 |
| 133 | 133 | 0.419 |
| 134 | 134 | 0.605 |
| 135 | 135 | 0.759 |
| 136 | 136 | 0.545 |
| 137 | 137 | 0.631 |
| 138 | 138 | 0.491 |
| 139 | 139 | 0.715 |
| 14 | 14 | 0.677 |
| 140 | 140 | 0.565 |
| 141 | 141 | 0.296 |
| 142 | 142 | 0.907 |
| 143 | 143 | 0.964 |
| 144 | 144 | 0.0888 |
| 145 | 145 | 0.954 |
| 146 | 146 | 0.502 |
| 147 | 147 | 0.731 |
| 148 | 148 | 0.418 |
| 149 | 149 | 0.00223 |
| 15 | 15 | 0.418 |
| 150 | 150 | 0.41 |
| 151 | 151 | 0.385 |
| 152 | 152 | 0.0712 |
| 153 | 153 | 0.932 |
| 154 | 154 | 0.454 |
| 155 | 155 | 0.355 |
| 156 | 156 | 0.517 |
| 157 | 157 | 0.561 |
| 158 | 158 | 0.0125 |
| 159 | 159 | 0.495 |
| 16 | 16 | 0.0227 |
| 160 | 160 | 0.47 |
| 161 | 161 | 0.621 |
| 162 | 162 | 0.374 |
| 163 | 163 | 0.894 |
| 164 | 164 | 0.246 |
| 165 | 165 | 0.452 |
| 166 | 166 | 0.00256 |
| 167 | 167 | 0.436 |
| 168 | 168 | 0.627 |
| 169 | 169 | 0.0305 |
| 17 | 17 | 0.653 |
| 18 | 18 | 0.524 |
| 19 | 19 | 0.00265 |
| 2 | 2 | 0.155 |
| 20 | 20 | 0.49 |
| 21 | 21 | 0.0772 |
| 22 | 22 | 0.115 |
| 23 | 23 | 0.261 |
| 24 | 24 | 0.144 |
| 25 | 25 | 0.446 |
| 26 | 26 | 0.541 |
| 27 | 27 | 0.495 |
| 28 | 28 | 0.191 |
| 29 | 29 | 0.418 |
| 3 | 3 | 0.57 |
| 30 | 30 | 0.155 |
| 31 | 31 | 0.636 |
| 32 | 32 | 5.63663e-20 |
| 33 | 33 | 0.644 |
| 34 | 34 | 0.416 |
| 35 | 35 | 0.926 |
| 36 | 36 | 0.0438 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.772 |
| 39 | 39 | 0.223 |
| 4 | 4 | 0.145 |
| 40 | 40 | 0.704 |
| 41 | 41 | 0.265 |
| 42 | 42 | 0.765 |
| 43 | 43 | 0.605 |
| 44 | 44 | 0.337 |
| 45 | 45 | 0.566 |
| 46 | 46 | 0.576 |
| 47 | 47 | 0.508 |
| 48 | 48 | 0.977 |
| 49 | 49 | 0.838 |
| 5 | 5 | 0.902 |
| 50 | 50 | 0.292 |
| 51 | 51 | 0.759 |
| 52 | 52 | 0.495 |
| 53 | 53 | 0.302 |
| 54 | 54 | 0.6 |
| 55 | 55 | 0.683 |
| 56 | 56 | 0.947 |
| 57 | 57 | 0.83 |
| 58 | 58 | 0.335 |
| 59 | 59 | 0.0155 |
| 6 | 6 | 0.196 |
| 60 | 60 | 0.67 |
| 61 | 61 | 0.531 |
| 62 | 62 | 0.834 |
| 63 | 63 | 0.276 |
| 64 | 64 | 0.656 |
| 65 | 65 | 0.259 |
| 66 | 66 | 0.0714 |
| 67 | 67 | 0.802 |
| 68 | 68 | 0.662 |
| 69 | 69 | 0.456 |
| 7 | 7 | 0.208 |
| 70 | 70 | 0.111 |
| 71 | 71 | 0.933 |
| 72 | 72 | 0.549 |
| 73 | 73 | 0.0285 |
| 74 | 74 | 0.444 |
| 75 | 75 | 0.733 |
| 76 | 76 | 0.666 |
| 77 | 77 | 0.00205 |
| 78 | 78 | 0.19 |
| 79 | 79 | 1.068e-4 |
| 8 | 8 | 0.432 |
| 80 | 80 | 0.0964 |
| 81 | 81 | 0.74 |
| 82 | 82 | 0.267 |
| 83 | 83 | 0.297 |
| 84 | 84 | 0.221 |
| 85 | 85 | 0.167 |
| 86 | 86 | 0.851 |
| 87 | 87 | 0.673 |
| 88 | 88 | 0.208 |
| 89 | 89 | 0.0365 |
| 9 | 9 | 0.294 |
| 90 | 90 | 0.283 |
| 91 | 91 | 0.728 |
| 92 | 92 | 0.359 |
| 93 | 93 | 0.696 |
| 94 | 94 | 0.542 |
| 95 | 95 | 0.968 |
| 96 | 96 | 0.482 |
| 97 | 97 | 0.318 |
| 98 | 98 | 0.629 |
| 99 | 99 | 0.00656 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12640
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
