FF:13437-144E8: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (28 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005071 | |||
|accession_numbers=CAGE;DRX008605;DRR009477;DRZ000902;DRZ002287;DRZ012252;DRZ013637 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0200005,FF:0200003 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep2.CNhs13839.13437-144E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep2.CNhs13839.13437-144E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep2.CNhs13839.13437-144E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep2.CNhs13839.13437-144E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C32-CRL1502%252c%2520day00%252c%2520rep2.CNhs13839.13437-144E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13437-144E8 | |id=FF:13437-144E8 | ||
|is_a=FF:0000210;;FF:0200003 | |is_a=FF:0000210;;FF:0200003 | ||
|name=iPS differentiation to neuron, control donor C32-CRL1502 | |is_obsolete= | ||
|library_id=CNhs13839 | |||
|library_id_phase_based=2:CNhs13839 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13437 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13437 | |||
|name=iPS differentiation to neuron, control donor C32-CRL1502 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.15089156821841,0.147806982767492,0.192129532618734,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482514733591738,0,0,0,0,0,0.537879847672109,0,0,0.292212525182144,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0.15991571517222,0.103254457557491,0,0,0,0,0,0,0,0.577244980846485,0,0,0,0,0.15089156821841,0,0,0.446161714473767,0,0,0.165316413747223,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0997494858530303,0.075445784109205,0,0,0.0161487017364408,-0.135751618586664,0.075445784109205,0,0,0,-0.0980353512377064,0.168588729632351,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.079362316030626,0.15089156821841,0,0,-0.0260038724415668,-0.201201032101904,0,0,0.273862441736255,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.15089156821841,0,0,0,0,-0.0962873070671547,0,0.655062405790218,-0.143515142523472,0.13133002048016,0,-0.220503282320206,0,0.15089156821841,0,0,0,0.15089156821841,0,0,0.26266004096032,0.134540174007755,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.069819920000999,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,0.304289631167265,0.0681713998949924,0.591963708273723,0.112574089083257,-0.055712496781182,0,0,0,-0.122364261700302,0.0831045306249376,0,0,0.0849959528374911,0.114632235576202,0,0,1.29344349356969,0,-0.358218007901354,-0.0604397418968705,0,0.343130854754817,0,0,0,0,0,0.15089156821841,0,0,0.15089156821841,0,0,0.293978353084737,-0.326988596678969,0.138935341352997,0.15089156821841,0.425169114961006,0,-0.407202825133178,0,0,-0.373286155956567,0.0744331016641473,0.154823453955581,-0.0649604800507461,0,0.0490820928962603,-0.108643711750607,-0.0584786026517303,-0.389917346435682,0.0034897188472712,0.161490100356326,0,-0.177792561697961,-0.298116666812994,0.119864555157667,-0.0997494858530303,-0.0331454421932225,0.0442237723059977,-0.405409378195513,0.15089156821841,0.26266004096032,0,-0.173180078963707,0,0,-0.227454673516454,0.0445547140751454,-0.177059443485877,-0.101455339639652,0.64864297087623,0.288288140732732,0.304382049503993,-0.457436452896595,0,0.0569880229692269,0.15089156821841,0,0,0.103835752330958,-0.00882734063924084,0.0200115707614869,0,-0.132505641904807,-0.0683442610773682,0,0.127639193781293,-0.42090475294007,0.26266004096032,0.00589380151149055,-0.427885662653002,0,0,-0.144990229495814,0.0982246320088302,0.712178403151579,-0.245944764379972,-0.276832102069846,0.310298514160828,0.051840878502333,-0.068868819627415,0,0.0405555805381594,0,0.0395489956567752,-0.202170761610805,-0.147182584142883,-0.0696549915888154,0,-0.0949547267017,-0.271492753987107,-0.08679577639606,-0.271503237173328,0.910447188164551,-0.187317858059359,-0.28321153678932,0.0161487017364408,-0.113256543008735,0.316210775281465,-0.0881268324752877,0,-0.532072930612207,-0.136344055905152,-0.00381808339102699,-0.0699523333857395,0,-0.345408857927454,0,-0.146394063896119,0.0395939968282282,-0.167787727515292,-0.27777371051292,-0.439289374580686,-0.297664802045551,0,0.0146450225039978,-0.525470896813654,0.26266004096032,-0.00232599238282694,0,0.543154075716372,0.525316238446852,0.185797702542319,-0.136204643755384,-0.0076594361990345,0,-0.198116450115934,0.15089156821841,0,-0.301104167591629,0.570753089763055,0.15089156821841,0.0145113453176362,0.102975488938183,-0.0610619654789223,0.146688967525386,0.26266004096032,0,0.39452878017655,0.0652042972774206,0.15089156821841,0.227612014054393,0,0.615799991659756,-0.102434773268346,0,1.09559603361954,0,0,0.0851322749951444,0,0.08040259249394,0,0,0.101590523307349,0,0,0.13133002048016,0.806229127527443,0.0173188669227387,0,0,0,0,0.0470433839452115,0,0,0.628263471641935,0.320849991565044,0.26266004096032,0.0388691961929006,0,0,0,0,0,-0.110803081130275,0,0,-0.171684391338754,0.0926009763240906,0.468946292597302,0.075445784109205,0,0,0,0.272432559747543,0.14823525781145,0,-0.131862706497632,0,0.075445784109205,0,0,-0.0861409897892114,0,0,0,0.075445784109205,0.0931611111647457,0.421675325948163,0,0,0,0.074517418304383,0,0,0,0,-0.0176341128611215,0,0,0.0802482297651989,0.00483029319711803,-0.21493612218921,0.777652821049212,0.0704833137810334,0.158602579000359,0.141136452767043,0.174626297926713,0,0,0.281806943926485,0,0.0410620688052503,-0.107654695815614,0.0685213452527434,0.26266004096032,0,0,0,0,0,0,0,-0.0634229441813459,0,0,0,0,0,0,0,0.15089156821841,0,0,0,-0.409816058302938,0.0586675115598993,0,0,0,0,0.0652872678991386,0,0,0.0513397610303019,0.328893720901062,0,0,0.075445784109205,0,0,0,0,0,0.534598628092084,0,0,0,0,0,0.446161714473767,0,0,0,0,0.384259065237469,0,0,0.147806982767492,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.042730749554118,0,0,0,0,0,0.15089156821841,0,0.502251468261991,0,0,0,0,2.0650176787338,0,0,0,0.157863656171164,0,-0.160318030086386,0,0,0.745843009675886,0.075445784109205,0,0.0549321608448229,0.212584557480503,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0.075445784109205,0,0,-0.23695116560325,0.0218531730999788,-0.261125346073215,-0.0182284225542462,0,0,-0.157182568523837,0,0,0,0,0,0,0.099989596451633,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.537879847672109,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0315469246030043,-0.283220399823148,-0.113135720334808,0.15089156821841,0,0.15089156821841,0.121350337470631,0,0,0,0,0.195882653541419,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212584557480503,0,0,0,0,0,0.482514733591738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0.15089156821841,0,0,0,-0.0340113632754165,0.15089156821841,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0708730999497713,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.425169114961006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0197402480106114,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0.543741633034668,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0.819338273498757,0,0,0,0,0.103254457557491,0,0.075445784109205,0,0,0,0,0,-0.0119827136926483,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05868728173792,0,0,0.271467431105315,0,0,0.212584557480503,0,0,0.130591901700724,0,0,0,0,0,0,0.0895713890682834,0,0,0,0,0,0,0,0,0,0,1.15448996169297,0,0,0,0.351471819906173,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,-0.0543570508758593,-0.201201032101904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206775804589365,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244077981150509,0,0,0,0,0,0.0457488617365291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01888617464309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26266004096032,0,0,0,0.212584557480503,0,0.117362424606766,0,0,0,0,0,0,0,0,-0.620396418749604,0.075445784109205,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158724632061252,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.081790630177302,0,0,0,0,0,0,0,0.0281955712214088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244077981150509,0,0,0,0,0,0.051706000591643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0437291980608217,0,0,0,0,0,0,0,0,0,0,0,0,0.15089156821841,0,0,0,0,0,0,0,0,0,0,0,0.075445784109205,0,0,0,0.463412077051394,0,0,0,0,0,0,0,0,0,0,0,0,0.075445784109205,0,0,0,0,0,0.165316413747223,0,0.075445784109205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292212525182144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.635837743940166,0,0,0,0,0,0,0,0,0,0,0,0.125797927431501,0.13133002048016,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.13133002048016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406847134278714,0,0,1.04467316401967,0,0,0,0,0,0,0,0,-0.0695147852012049,0,0,0,0,0,0,0,0.175735909953086,0,0,0.110815320493878,0,0,0.113843191638397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.129180527104556,0,0.593457156465437,0.571819326454362,0,0,0.320040312084684,0.15089156821841,0.424100559567448,0.0533137935195505,0.38391427139016,0,0.087667145870021,0.366179836120938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110062043478736,0,0.15089156821841,0,0.0940326220558106,0.366362108345597,0.26266004096032,0.109319707950594,0,0,0.273366509253886,0,0,0,0.255512412532587 | |||
|rna_box=144 | |rna_box=144 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 76: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.44E+10 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|sample_age=12wk gestation | |sample_age=12wk gestation | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.31471219324337e-269!GO:0043226;organelle;4.14445803671624e-222!GO:0043229;intracellular organelle;7.67118832930783e-222!GO:0043231;intracellular membrane-bound organelle;5.8311584027464e-217!GO:0043227;membrane-bound organelle;8.7428929468698e-217!GO:0005737;cytoplasm;6.622969372114e-176!GO:0044422;organelle part;9.28327008533934e-162!GO:0044446;intracellular organelle part;1.93086835688084e-160!GO:0044444;cytoplasmic part;3.68230371913216e-122!GO:0032991;macromolecular complex;1.3304886522448e-121!GO:0030529;ribonucleoprotein complex;9.57822611665471e-105!GO:0044238;primary metabolic process;1.39258229577171e-103!GO:0044237;cellular metabolic process;2.22019481896881e-103!GO:0005634;nucleus;3.83360270686446e-103!GO:0043170;macromolecule metabolic process;6.58687734425608e-97!GO:0003723;RNA binding;1.3548601612796e-88!GO:0044428;nuclear part;5.46889165113787e-86!GO:0043233;organelle lumen;3.12358191208e-84!GO:0031974;membrane-enclosed lumen;3.12358191208e-84!GO:0005739;mitochondrion;1.26860346449163e-77!GO:0005515;protein binding;1.57408216864162e-63!GO:0005840;ribosome;1.42004717540815e-62!GO:0006396;RNA processing;1.4377648644591e-62!GO:0043234;protein complex;8.86356581218659e-61!GO:0043283;biopolymer metabolic process;1.62647071346897e-59!GO:0006412;translation;2.20796389132389e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00129638092274e-55!GO:0003735;structural constituent of ribosome;1.25016448663548e-54!GO:0016043;cellular component organization and biogenesis;9.33646534095549e-53!GO:0010467;gene expression;1.84654687624962e-51!GO:0031981;nuclear lumen;1.98545567206802e-51!GO:0044429;mitochondrial part;2.39561097362959e-51!GO:0043228;non-membrane-bound organelle;4.98269721868965e-49!GO:0043232;intracellular non-membrane-bound organelle;4.98269721868965e-49!GO:0033279;ribosomal subunit;6.59087326571404e-48!GO:0006996;organelle organization and biogenesis;1.62409024927287e-47!GO:0019538;protein metabolic process;1.62409024927287e-47!GO:0006259;DNA metabolic process;1.08397657915132e-45!GO:0016071;mRNA metabolic process;1.69248836052303e-45!GO:0044249;cellular biosynthetic process;1.73818625184782e-45!GO:0009058;biosynthetic process;2.06942392221209e-45!GO:0031967;organelle envelope;3.85999591926501e-44!GO:0031975;envelope;8.34038772394006e-44!GO:0031090;organelle membrane;1.22057964199394e-43!GO:0008380;RNA splicing;3.16426882808001e-43!GO:0065003;macromolecular complex assembly;6.7180795515079e-43!GO:0009059;macromolecule biosynthetic process;8.20194654924085e-43!GO:0044267;cellular protein metabolic process;1.07876713503e-41!GO:0044260;cellular macromolecule metabolic process;2.54102291871483e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.9974800086307e-40!GO:0006397;mRNA processing;1.98835460148826e-39!GO:0022607;cellular component assembly;5.58395076781602e-39!GO:0015031;protein transport;4.39469949669421e-38!GO:0033036;macromolecule localization;5.40401496201996e-38!GO:0005829;cytosol;1.42084336585861e-36!GO:0003676;nucleic acid binding;1.6878183107137e-35!GO:0046907;intracellular transport;6.75056550136544e-34!GO:0008104;protein localization;7.80594344314e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.25104985901521e-33!GO:0045184;establishment of protein localization;2.42157000814746e-33!GO:0005681;spliceosome;3.96235911725319e-32!GO:0000166;nucleotide binding;6.09690794040654e-31!GO:0005740;mitochondrial envelope;8.24930989716883e-31!GO:0019866;organelle inner membrane;2.65233995875095e-30!GO:0007049;cell cycle;1.09748280084443e-29!GO:0005694;chromosome;1.73131367565148e-29!GO:0005654;nucleoplasm;6.97669951268301e-29!GO:0031966;mitochondrial membrane;9.34858016933288e-29!GO:0005743;mitochondrial inner membrane;2.58122906149332e-28!GO:0006886;intracellular protein transport;1.21816227297056e-27!GO:0044445;cytosolic part;1.05130953247601e-26!GO:0044427;chromosomal part;1.22091605339195e-26!GO:0006974;response to DNA damage stimulus;5.34401596583437e-26!GO:0044455;mitochondrial membrane part;1.66786094713245e-25!GO:0031980;mitochondrial lumen;2.96939151567803e-25!GO:0005759;mitochondrial matrix;2.96939151567803e-25!GO:0015934;large ribosomal subunit;4.79513421571096e-25!GO:0005730;nucleolus;1.09373385162006e-24!GO:0016070;RNA metabolic process;3.80252894959538e-24!GO:0015935;small ribosomal subunit;5.81083783246952e-24!GO:0051276;chromosome organization and biogenesis;7.71867670037341e-24!GO:0006119;oxidative phosphorylation;1.95126479477637e-23!GO:0051649;establishment of cellular localization;7.08849512523828e-23!GO:0044451;nucleoplasm part;8.29630487806339e-23!GO:0000278;mitotic cell cycle;1.7823024915011e-22!GO:0022402;cell cycle process;6.39769995673134e-22!GO:0016462;pyrophosphatase activity;7.30177957484558e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.83039607195225e-22!GO:0051641;cellular localization;9.61042191316046e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.24845243683066e-21!GO:0006281;DNA repair;1.55691255379257e-21!GO:0022618;protein-RNA complex assembly;1.82892457230739e-21!GO:0017111;nucleoside-triphosphatase activity;9.25464741638231e-21!GO:0032553;ribonucleotide binding;2.52717935722905e-20!GO:0032555;purine ribonucleotide binding;2.52717935722905e-20!GO:0016874;ligase activity;5.37750162719564e-20!GO:0017076;purine nucleotide binding;1.08285618739908e-19!GO:0006457;protein folding;1.23181018061158e-19!GO:0006260;DNA replication;3.74843948788965e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;6.93167803097528e-19!GO:0005761;mitochondrial ribosome;7.82053383626368e-19!GO:0000313;organellar ribosome;7.82053383626368e-19!GO:0042254;ribosome biogenesis and assembly;9.7541998813412e-19!GO:0000087;M phase of mitotic cell cycle;1.91812172308605e-18!GO:0022403;cell cycle phase;2.35436845857082e-18!GO:0006323;DNA packaging;2.45281658325278e-18!GO:0007067;mitosis;3.42074843130689e-18!GO:0044265;cellular macromolecule catabolic process;4.19374066046472e-18!GO:0012505;endomembrane system;7.37067632475926e-18!GO:0005746;mitochondrial respiratory chain;8.41980875139826e-18!GO:0008135;translation factor activity, nucleic acid binding;1.05798324551735e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.41462548331355e-17!GO:0019941;modification-dependent protein catabolic process;2.22177128251833e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.22177128251833e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.16132804491981e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.25405229042799e-17!GO:0044257;cellular protein catabolic process;3.41939474361945e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.1051920519873e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.81594938533121e-17!GO:0003954;NADH dehydrogenase activity;4.81594938533121e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.81594938533121e-17!GO:0005524;ATP binding;6.82498751379578e-17!GO:0051301;cell division;7.46362158802752e-17!GO:0006512;ubiquitin cycle;8.6438797427563e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.24888806912569e-16!GO:0000375;RNA splicing, via transesterification reactions;1.24888806912569e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.24888806912569e-16!GO:0032559;adenyl ribonucleotide binding;1.4273685390637e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.77065223474461e-16!GO:0000785;chromatin;3.49424025496514e-16!GO:0009719;response to endogenous stimulus;5.19014084191806e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.47684031810941e-16!GO:0065004;protein-DNA complex assembly;5.80902654883768e-16!GO:0030554;adenyl nucleotide binding;8.11319959668908e-16!GO:0043285;biopolymer catabolic process;8.7639703114675e-16!GO:0000279;M phase;1.15152355749179e-15!GO:0051186;cofactor metabolic process;2.12727407474092e-15!GO:0031965;nuclear membrane;2.38553575931814e-15!GO:0009057;macromolecule catabolic process;2.77528796393585e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.02037412441138e-15!GO:0042773;ATP synthesis coupled electron transport;7.02037412441138e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.08281086816599e-14!GO:0045271;respiratory chain complex I;1.08281086816599e-14!GO:0005747;mitochondrial respiratory chain complex I;1.08281086816599e-14!GO:0030163;protein catabolic process;1.15075898181474e-14!GO:0044453;nuclear membrane part;1.69383609565018e-14!GO:0006333;chromatin assembly or disassembly;1.81636149035572e-14!GO:0006605;protein targeting;3.49296988606525e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.92088461682979e-14!GO:0051082;unfolded protein binding;4.00639767964144e-14!GO:0005635;nuclear envelope;4.93427312575397e-14!GO:0005643;nuclear pore;6.08446213085598e-14!GO:0044248;cellular catabolic process;6.16788086851215e-14!GO:0006334;nucleosome assembly;6.43583142005909e-14!GO:0006399;tRNA metabolic process;6.89118556618617e-14!GO:0006413;translational initiation;7.61169262032921e-14!GO:0048770;pigment granule;8.47595777339629e-14!GO:0042470;melanosome;8.47595777339629e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.66505627592625e-13!GO:0043412;biopolymer modification;1.84845342549614e-13!GO:0003743;translation initiation factor activity;2.07533699218158e-13!GO:0006364;rRNA processing;3.98036266335055e-13!GO:0031497;chromatin assembly;4.8564926105253e-13!GO:0006732;coenzyme metabolic process;6.85047388845278e-13!GO:0016072;rRNA metabolic process;8.68433789026189e-13!GO:0016604;nuclear body;8.88395522277791e-13!GO:0005794;Golgi apparatus;1.1661714870718e-12!GO:0004386;helicase activity;1.36913434605191e-12!GO:0006403;RNA localization;2.20275714265298e-12!GO:0016887;ATPase activity;2.25051612367134e-12!GO:0042623;ATPase activity, coupled;2.73635202723754e-12!GO:0006446;regulation of translational initiation;3.19721679697264e-12!GO:0050657;nucleic acid transport;4.40538275253032e-12!GO:0051236;establishment of RNA localization;4.40538275253032e-12!GO:0050658;RNA transport;4.40538275253032e-12!GO:0065002;intracellular protein transport across a membrane;1.01511033241167e-11!GO:0008565;protein transporter activity;1.36236828619821e-11!GO:0006464;protein modification process;2.55124720822953e-11!GO:0015630;microtubule cytoskeleton;2.7289602727398e-11!GO:0006261;DNA-dependent DNA replication;4.64279764985579e-11!GO:0046930;pore complex;5.52324420886879e-11!GO:0016607;nuclear speck;6.17069387350869e-11!GO:0006461;protein complex assembly;7.06732337062207e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.14090871373373e-10!GO:0016740;transferase activity;1.27588582979059e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.46084688032644e-10!GO:0006913;nucleocytoplasmic transport;1.55431006826514e-10!GO:0008134;transcription factor binding;1.55739498494839e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.25502089703193e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.25502089703193e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.25502089703193e-10!GO:0009259;ribonucleotide metabolic process;2.33211218646616e-10!GO:0051028;mRNA transport;2.35155430237059e-10!GO:0043687;post-translational protein modification;2.48344462585075e-10!GO:0006163;purine nucleotide metabolic process;2.80386108084542e-10!GO:0008026;ATP-dependent helicase activity;3.0804972694163e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.64975952593899e-10!GO:0006164;purine nucleotide biosynthetic process;4.10611356019739e-10!GO:0051169;nuclear transport;4.31713309630734e-10!GO:0048193;Golgi vesicle transport;4.64710552605993e-10!GO:0043038;amino acid activation;5.59879825895198e-10!GO:0006418;tRNA aminoacylation for protein translation;5.59879825895198e-10!GO:0043039;tRNA aminoacylation;5.59879825895198e-10!GO:0009055;electron carrier activity;7.21100044303814e-10!GO:0051726;regulation of cell cycle;7.65260821165557e-10!GO:0009260;ribonucleotide biosynthetic process;8.40138246839565e-10!GO:0000074;regulation of progression through cell cycle;9.47829787788759e-10!GO:0005783;endoplasmic reticulum;9.54575061890424e-10!GO:0009150;purine ribonucleotide metabolic process;2.68096192898395e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.39545825751724e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.99891612354312e-09!GO:0051188;cofactor biosynthetic process;4.76144603855757e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.95918815807477e-09!GO:0007005;mitochondrion organization and biogenesis;5.69319885638089e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.32901494705547e-08!GO:0008639;small protein conjugating enzyme activity;1.49139890494632e-08!GO:0000775;chromosome, pericentric region;1.6050683357535e-08!GO:0016779;nucleotidyltransferase activity;1.81987267326364e-08!GO:0044432;endoplasmic reticulum part;2.48255165997619e-08!GO:0004842;ubiquitin-protein ligase activity;2.51512308806108e-08!GO:0003697;single-stranded DNA binding;3.02473158606557e-08!GO:0000786;nucleosome;3.74298405616201e-08!GO:0009117;nucleotide metabolic process;4.82091689843188e-08!GO:0015986;ATP synthesis coupled proton transport;5.37712436763009e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.37712436763009e-08!GO:0016192;vesicle-mediated transport;5.88034873289364e-08!GO:0043566;structure-specific DNA binding;6.1034255789574e-08!GO:0003899;DNA-directed RNA polymerase activity;7.11836661679198e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.57748685676852e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.57748685676852e-08!GO:0017038;protein import;7.88378992434125e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.21312890796937e-08!GO:0009060;aerobic respiration;8.37996920921505e-08!GO:0005657;replication fork;8.42392846756354e-08!GO:0009141;nucleoside triphosphate metabolic process;8.96203724631114e-08!GO:0019787;small conjugating protein ligase activity;9.19431646743914e-08!GO:0009108;coenzyme biosynthetic process;1.01504903030234e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.07262016613963e-07!GO:0009056;catabolic process;1.07262016613963e-07!GO:0016568;chromatin modification;1.52524900174024e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.60433522362426e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.60433522362426e-07!GO:0005793;ER-Golgi intermediate compartment;1.95747506230051e-07!GO:0045333;cellular respiration;2.14262240256331e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.21212787103859e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.21212787103859e-07!GO:0019829;cation-transporting ATPase activity;2.23363975449658e-07!GO:0008094;DNA-dependent ATPase activity;2.31348534736982e-07!GO:0007051;spindle organization and biogenesis;2.86584678980778e-07!GO:0043623;cellular protein complex assembly;3.40174695147107e-07!GO:0000245;spliceosome assembly;3.77829169547782e-07!GO:0005762;mitochondrial large ribosomal subunit;4.09636381681227e-07!GO:0000315;organellar large ribosomal subunit;4.09636381681227e-07!GO:0045259;proton-transporting ATP synthase complex;4.11671187817919e-07!GO:0005819;spindle;7.17845578358793e-07!GO:0006754;ATP biosynthetic process;7.64261726430768e-07!GO:0006753;nucleoside phosphate metabolic process;7.64261726430768e-07!GO:0032446;protein modification by small protein conjugation;8.82561813511588e-07!GO:0012501;programmed cell death;9.5128828808265e-07!GO:0006752;group transfer coenzyme metabolic process;9.57197913436665e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.70588895470496e-07!GO:0044431;Golgi apparatus part;1.035103152808e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.12637214301907e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2306908644726e-06!GO:0051329;interphase of mitotic cell cycle;1.26103711003361e-06!GO:0000314;organellar small ribosomal subunit;1.29488161499627e-06!GO:0005763;mitochondrial small ribosomal subunit;1.29488161499627e-06!GO:0006915;apoptosis;1.31748205047291e-06!GO:0046034;ATP metabolic process;1.34100207538453e-06!GO:0005813;centrosome;1.39829890525937e-06!GO:0048475;coated membrane;1.69137594076651e-06!GO:0030117;membrane coat;1.69137594076651e-06!GO:0016567;protein ubiquitination;1.87528361711263e-06!GO:0003924;GTPase activity;1.99017227043452e-06!GO:0006099;tricarboxylic acid cycle;1.99017227043452e-06!GO:0046356;acetyl-CoA catabolic process;1.99017227043452e-06!GO:0016881;acid-amino acid ligase activity;2.77196862849599e-06!GO:0051325;interphase;2.78171971079621e-06!GO:0006084;acetyl-CoA metabolic process;2.80058699686992e-06!GO:0005525;GTP binding;2.87914089572669e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.36407997657492e-06!GO:0005815;microtubule organizing center;3.6502713708386e-06!GO:0000075;cell cycle checkpoint;4.15516616827051e-06!GO:0050794;regulation of cellular process;4.4830730151106e-06!GO:0004298;threonine endopeptidase activity;4.77625541500381e-06!GO:0016741;transferase activity, transferring one-carbon groups;5.89582720297516e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.36643989532394e-06!GO:0008168;methyltransferase activity;6.88963625603723e-06!GO:0005789;endoplasmic reticulum membrane;7.34428643911989e-06!GO:0007010;cytoskeleton organization and biogenesis;7.45820640982585e-06!GO:0003712;transcription cofactor activity;7.65196396782459e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.24829375591435e-06!GO:0003724;RNA helicase activity;8.4399521321929e-06!GO:0000139;Golgi membrane;1.03077542661497e-05!GO:0006793;phosphorus metabolic process;1.04643565368883e-05!GO:0006796;phosphate metabolic process;1.04643565368883e-05!GO:0016853;isomerase activity;1.06031506896017e-05!GO:0016859;cis-trans isomerase activity;1.21502776255212e-05!GO:0009109;coenzyme catabolic process;1.33813586080349e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.35187791156265e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.41688416478078e-05!GO:0007017;microtubule-based process;1.5142513544207e-05!GO:0008219;cell death;1.61508260417601e-05!GO:0016265;death;1.61508260417601e-05!GO:0003690;double-stranded DNA binding;1.7759371881604e-05!GO:0016363;nuclear matrix;1.99623410055122e-05!GO:0051170;nuclear import;2.05409677696293e-05!GO:0051187;cofactor catabolic process;2.11055342823622e-05!GO:0051246;regulation of protein metabolic process;2.15046698689879e-05!GO:0030120;vesicle coat;2.22679949035883e-05!GO:0030662;coated vesicle membrane;2.22679949035883e-05!GO:0005874;microtubule;2.23432039512133e-05!GO:0005667;transcription factor complex;2.29170434563265e-05!GO:0032561;guanyl ribonucleotide binding;2.59534996349803e-05!GO:0019001;guanyl nucleotide binding;2.59534996349803e-05!GO:0006613;cotranslational protein targeting to membrane;2.68405940445756e-05!GO:0008033;tRNA processing;2.78895871109702e-05!GO:0031982;vesicle;2.89448040889965e-05!GO:0044452;nucleolar part;3.0297960401585e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;3.13709097433158e-05!GO:0009165;nucleotide biosynthetic process;3.27567057374582e-05!GO:0006366;transcription from RNA polymerase II promoter;3.30388035484295e-05!GO:0031410;cytoplasmic vesicle;3.85131952381379e-05!GO:0006302;double-strand break repair;4.24038703197421e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.38769486031867e-05!GO:0031988;membrane-bound vesicle;4.49307912662077e-05!GO:0051052;regulation of DNA metabolic process;4.64778395500873e-05!GO:0006839;mitochondrial transport;4.67659507758797e-05!GO:0000776;kinetochore;4.76948373668942e-05!GO:0051168;nuclear export;4.8053848462234e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.99526083763644e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.24664614379018e-05!GO:0006606;protein import into nucleus;5.76713767260562e-05!GO:0000059;protein import into nucleus, docking;7.34748670899421e-05!GO:0043021;ribonucleoprotein binding;7.55237576140147e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;8.03308607175992e-05!GO:0006520;amino acid metabolic process;0.000102247840222915!GO:0003682;chromatin binding;0.000110788257550117!GO:0003678;DNA helicase activity;0.000112633637277601!GO:0019222;regulation of metabolic process;0.000115367866828929!GO:0051427;hormone receptor binding;0.00011917986818542!GO:0003729;mRNA binding;0.000123499774803068!GO:0006383;transcription from RNA polymerase III promoter;0.000126723363789572!GO:0043681;protein import into mitochondrion;0.00012808769106102!GO:0016310;phosphorylation;0.000128314724107699!GO:0006310;DNA recombination;0.000146614625722779!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000147811029818869!GO:0006626;protein targeting to mitochondrion;0.000147811029818869!GO:0005768;endosome;0.000150250454842998!GO:0016787;hydrolase activity;0.000161756773415329!GO:0045454;cell redox homeostasis;0.000162927628437809!GO:0008186;RNA-dependent ATPase activity;0.000166777497539678!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000173961808436298!GO:0003684;damaged DNA binding;0.000191114749364749!GO:0000151;ubiquitin ligase complex;0.00020607563074642!GO:0035257;nuclear hormone receptor binding;0.00024968496736361!GO:0006730;one-carbon compound metabolic process;0.000285867301341225!GO:0006612;protein targeting to membrane;0.00030889066718286!GO:0006414;translational elongation;0.000325698888881249!GO:0005684;U2-dependent spliceosome;0.0003315443904774!GO:0007006;mitochondrial membrane organization and biogenesis;0.000335203982413027!GO:0007093;mitotic cell cycle checkpoint;0.000372090847684774!GO:0032508;DNA duplex unwinding;0.000381494203882094!GO:0032392;DNA geometric change;0.000381494203882094!GO:0030880;RNA polymerase complex;0.000406531765844759!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000477796133570441!GO:0006402;mRNA catabolic process;0.000521984956718447!GO:0004004;ATP-dependent RNA helicase activity;0.000525395062252681!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0005357555792917!GO:0007059;chromosome segregation;0.00054594046332482!GO:0007052;mitotic spindle organization and biogenesis;0.000575764581251291!GO:0008250;oligosaccharyl transferase complex;0.000587591649030391!GO:0005788;endoplasmic reticulum lumen;0.000600217408520972!GO:0043414;biopolymer methylation;0.000609622267586497!GO:0032259;methylation;0.000622086685685735!GO:0051920;peroxiredoxin activity;0.000626780554521484!GO:0051087;chaperone binding;0.000645344025902349!GO:0006268;DNA unwinding during replication;0.000708236305154271!GO:0046483;heterocycle metabolic process;0.000708236305154271!GO:0050789;regulation of biological process;0.000708236305154271!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000796801970213995!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000796801970213995!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000796801970213995!GO:0008654;phospholipid biosynthetic process;0.000797567223397693!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000824546518545414!GO:0015980;energy derivation by oxidation of organic compounds;0.00088022478869666!GO:0043069;negative regulation of programmed cell death;0.00088022478869666!GO:0006270;DNA replication initiation;0.000881120715273054!GO:0004527;exonuclease activity;0.000885668689787129!GO:0045786;negative regulation of progression through cell cycle;0.000913330977426921!GO:0005769;early endosome;0.000913330977426921!GO:0031252;leading edge;0.000922196049430521!GO:0005048;signal sequence binding;0.000945790135712867!GO:0043066;negative regulation of apoptosis;0.0010355573046608!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0010449274411806!GO:0000428;DNA-directed RNA polymerase complex;0.0010449274411806!GO:0004576;oligosaccharyl transferase activity;0.00112222682799992!GO:0005798;Golgi-associated vesicle;0.00112311109923495!GO:0005770;late endosome;0.00112560425717071!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00112583429942215!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00112583429942215!GO:0006284;base-excision repair;0.00123756758726561!GO:0006352;transcription initiation;0.00127470929072476!GO:0000096;sulfur amino acid metabolic process;0.0012820743482811!GO:0006401;RNA catabolic process;0.00145285314839646!GO:0006541;glutamine metabolic process;0.00153111792427994!GO:0030867;rough endoplasmic reticulum membrane;0.00154367389144769!GO:0051539;4 iron, 4 sulfur cluster binding;0.0015878096312615!GO:0019843;rRNA binding;0.00167710087150906!GO:0016272;prefoldin complex;0.00169562466501786!GO:0048523;negative regulation of cellular process;0.00170811842333341!GO:0005741;mitochondrial outer membrane;0.00170811842333341!GO:0008287;protein serine/threonine phosphatase complex;0.00173526701090693!GO:0006790;sulfur metabolic process;0.00174027292852065!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00176658309440722!GO:0043596;nuclear replication fork;0.00179302045727593!GO:0016126;sterol biosynthetic process;0.00180879345555173!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00193159448954163!GO:0000049;tRNA binding;0.00197740124681894!GO:0031072;heat shock protein binding;0.00199508129281199!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00199508129281199!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00206927933168815!GO:0006144;purine base metabolic process;0.00209352245380271!GO:0006275;regulation of DNA replication;0.00216875309893124!GO:0016491;oxidoreductase activity;0.00221577207396525!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.00221577207396525!GO:0043067;regulation of programmed cell death;0.00241906764173569!GO:0006405;RNA export from nucleus;0.00245207691907802!GO:0009112;nucleobase metabolic process;0.00246626879493167!GO:0000228;nuclear chromosome;0.00246898838088276!GO:0042981;regulation of apoptosis;0.002546398730243!GO:0031968;organelle outer membrane;0.00257916590918677!GO:0008312;7S RNA binding;0.00260842653276267!GO:0007088;regulation of mitosis;0.00266040438423227!GO:0048500;signal recognition particle;0.00276324029864705!GO:0006916;anti-apoptosis;0.00277751934972065!GO:0007264;small GTPase mediated signal transduction;0.00278718490886522!GO:0032200;telomere organization and biogenesis;0.00283594056038759!GO:0000723;telomere maintenance;0.00283594056038759!GO:0008652;amino acid biosynthetic process;0.00285487055640608!GO:0022884;macromolecule transmembrane transporter activity;0.00285487055640608!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.00285487055640608!GO:0003711;transcription elongation regulator activity;0.00288472479601555!GO:0051252;regulation of RNA metabolic process;0.00293990661501663!GO:0030118;clathrin coat;0.00316942303068339!GO:0065009;regulation of a molecular function;0.0031788651674482!GO:0000178;exosome (RNase complex);0.0031788651674482!GO:0042802;identical protein binding;0.0031888480115317!GO:0005758;mitochondrial intermembrane space;0.0032229356501357!GO:0019867;outer membrane;0.00334686039037465!GO:0018196;peptidyl-asparagine modification;0.00334783028000123!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00334783028000123!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0035064731187098!GO:0030119;AP-type membrane coat adaptor complex;0.00351644944184916!GO:0044440;endosomal part;0.00352356047429785!GO:0010008;endosome membrane;0.00352356047429785!GO:0015631;tubulin binding;0.00356114488021975!GO:0006595;polyamine metabolic process;0.00358904730241283!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0036839792154011!GO:0015002;heme-copper terminal oxidase activity;0.0036839792154011!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0036839792154011!GO:0004129;cytochrome-c oxidase activity;0.0036839792154011!GO:0006611;protein export from nucleus;0.00370780297913554!GO:0031970;organelle envelope lumen;0.00373059367713176!GO:0030145;manganese ion binding;0.0037576315706789!GO:0005791;rough endoplasmic reticulum;0.00378456586273351!GO:0000725;recombinational repair;0.00378456586273351!GO:0000724;double-strand break repair via homologous recombination;0.00378456586273351!GO:0005905;coated pit;0.00389240651708652!GO:0031323;regulation of cellular metabolic process;0.00396098119129891!GO:0030658;transport vesicle membrane;0.00400752813793667!GO:0008320;protein transmembrane transporter activity;0.0040214845275484!GO:0033116;ER-Golgi intermediate compartment membrane;0.00406658089486637!GO:0006519;amino acid and derivative metabolic process;0.00408725705653758!GO:0019752;carboxylic acid metabolic process;0.00412787666386998!GO:0009116;nucleoside metabolic process;0.00413550379367652!GO:0006350;transcription;0.00423440405419453!GO:0006082;organic acid metabolic process;0.00430347536158107!GO:0008022;protein C-terminus binding;0.00432924369700532!GO:0008601;protein phosphatase type 2A regulator activity;0.0043374486570696!GO:0009451;RNA modification;0.00438608329358803!GO:0031570;DNA integrity checkpoint;0.0045201568831477!GO:0031577;spindle checkpoint;0.0045201568831477!GO:0006338;chromatin remodeling;0.00454033284617348!GO:0043488;regulation of mRNA stability;0.00463292831932057!GO:0043487;regulation of RNA stability;0.00463292831932057!GO:0005885;Arp2/3 protein complex;0.00470667565636534!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00470667565636534!GO:0031124;mRNA 3'-end processing;0.00470667565636534!GO:0048471;perinuclear region of cytoplasm;0.00482479061401339!GO:0003746;translation elongation factor activity;0.00503343897017799!GO:0000159;protein phosphatase type 2A complex;0.00514951549677134!GO:0004722;protein serine/threonine phosphatase activity;0.00514951549677134!GO:0030131;clathrin adaptor complex;0.00518909426629642!GO:0048487;beta-tubulin binding;0.00528974176798499!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00534897191752042!GO:0045047;protein targeting to ER;0.00534897191752042!GO:0031324;negative regulation of cellular metabolic process;0.0054054233930627!GO:0005637;nuclear inner membrane;0.00549513256009245!GO:0005876;spindle microtubule;0.00555306921726428!GO:0042393;histone binding;0.00590389778387818!GO:0000792;heterochromatin;0.00592695234249312!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00603785687676932!GO:0015399;primary active transmembrane transporter activity;0.00603785687676932!GO:0000082;G1/S transition of mitotic cell cycle;0.00650693067188449!GO:0050662;coenzyme binding;0.00658779094833853!GO:0044450;microtubule organizing center part;0.00666246408630005!GO:0000209;protein polyubiquitination;0.00666246408630005!GO:0000097;sulfur amino acid biosynthetic process;0.00681270696492019!GO:0030660;Golgi-associated vesicle membrane;0.00715861748928507!GO:0008139;nuclear localization sequence binding;0.00731104464989831!GO:0007021;tubulin folding;0.00733575006020508!GO:0006378;mRNA polyadenylation;0.00734092012801907!GO:0051287;NAD binding;0.00757492648359592!GO:0004532;exoribonuclease activity;0.00786169682751192!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00786169682751192!GO:0006695;cholesterol biosynthetic process;0.00788877972019809!GO:0051789;response to protein stimulus;0.00836836806551416!GO:0006986;response to unfolded protein;0.00836836806551416!GO:0005832;chaperonin-containing T-complex;0.00839805147524718!GO:0006091;generation of precursor metabolites and energy;0.0084109897161186!GO:0030027;lamellipodium;0.0084290541893694!GO:0043022;ribosome binding;0.00857538981033806!GO:0000339;RNA cap binding;0.00863476876621194!GO:0019783;small conjugating protein-specific protease activity;0.00871808868587049!GO:0046474;glycerophospholipid biosynthetic process;0.00884804563096543!GO:0043601;nuclear replisome;0.00887362082955057!GO:0030894;replisome;0.00887362082955057!GO:0016251;general RNA polymerase II transcription factor activity;0.00899522707389225!GO:0000922;spindle pole;0.00900710607763473!GO:0006289;nucleotide-excision repair;0.00917490740699189!GO:0008632;apoptotic program;0.00921659654127744!GO:0051540;metal cluster binding;0.00924077503456548!GO:0051536;iron-sulfur cluster binding;0.00924077503456548!GO:0043086;negative regulation of catalytic activity;0.00925988359899304!GO:0004003;ATP-dependent DNA helicase activity;0.00925988359899304!GO:0051053;negative regulation of DNA metabolic process;0.00942439364190987!GO:0040029;regulation of gene expression, epigenetic;0.00947045642915172!GO:0009892;negative regulation of metabolic process;0.00951146091089024!GO:0006007;glucose catabolic process;0.00953344756881826!GO:0016584;nucleosome positioning;0.00956768236398064!GO:0005669;transcription factor TFIID complex;0.00966741744477875!GO:0046467;membrane lipid biosynthetic process;0.00967665874358988!GO:0044454;nuclear chromosome part;0.00995570468240387!GO:0008180;signalosome;0.00999572033825908!GO:0015992;proton transport;0.0100172392367598!GO:0009081;branched chain family amino acid metabolic process;0.0102485693767434!GO:0030036;actin cytoskeleton organization and biogenesis;0.0104343843005447!GO:0003713;transcription coactivator activity;0.0104593796254276!GO:0006818;hydrogen transport;0.0105209966832341!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0106295073407113!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0109296170296059!GO:0003714;transcription corepressor activity;0.0109477191127559!GO:0009303;rRNA transcription;0.0111697472618884!GO:0004674;protein serine/threonine kinase activity;0.0112917086540076!GO:0045947;negative regulation of translational initiation;0.0112917086540076!GO:0004843;ubiquitin-specific protease activity;0.0114496126534705!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0117736758053641!GO:0030134;ER to Golgi transport vesicle;0.0119701703184157!GO:0019899;enzyme binding;0.0120031589550481!GO:0008092;cytoskeletal protein binding;0.0120818177094154!GO:0050178;phenylpyruvate tautomerase activity;0.0121761598871788!GO:0004518;nuclease activity;0.012249146587205!GO:0042770;DNA damage response, signal transduction;0.0124275474258909!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0128251037007778!GO:0000070;mitotic sister chromatid segregation;0.0132262233579477!GO:0048519;negative regulation of biological process;0.0133031124134833!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.013332579494964!GO:0016564;transcription repressor activity;0.0133767481445419!GO:0044262;cellular carbohydrate metabolic process;0.0134582332504805!GO:0008408;3'-5' exonuclease activity;0.0136338958216274!GO:0030133;transport vesicle;0.014475929690432!GO:0006220;pyrimidine nucleotide metabolic process;0.0149334856091115!GO:0044433;cytoplasmic vesicle part;0.015233710752077!GO:0043284;biopolymer biosynthetic process;0.015233710752077!GO:0045045;secretory pathway;0.0154504967430591!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0157258211315268!GO:0012506;vesicle membrane;0.0158572820229675!GO:0031123;RNA 3'-end processing;0.0163984382066331!GO:0000781;chromosome, telomeric region;0.0165011891267668!GO:0006733;oxidoreduction coenzyme metabolic process;0.0167645809247833!GO:0000819;sister chromatid segregation;0.0167975990747275!GO:0030127;COPII vesicle coat;0.0167975990747275!GO:0012507;ER to Golgi transport vesicle membrane;0.0167975990747275!GO:0030659;cytoplasmic vesicle membrane;0.0171998319741051!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0172160262578489!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0175189403836187!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0177390676769574!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0177441765878122!GO:0006400;tRNA modification;0.0180437821181537!GO:0005663;DNA replication factor C complex;0.0180546367807555!GO:0004221;ubiquitin thiolesterase activity;0.0183408798109802!GO:0000077;DNA damage checkpoint;0.0183996538232327!GO:0035258;steroid hormone receptor binding;0.0187986646957582!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0202306728577085!GO:0006740;NADPH regeneration;0.0204367254604262!GO:0006098;pentose-phosphate shunt;0.0204367254604262!GO:0009124;nucleoside monophosphate biosynthetic process;0.0204812751461852!GO:0009123;nucleoside monophosphate metabolic process;0.0204812751461852!GO:0001824;blastocyst development;0.0205472380535363!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0205632684360063!GO:0007004;telomere maintenance via telomerase;0.0211779320296563!GO:0010468;regulation of gene expression;0.021598606568705!GO:0030176;integral to endoplasmic reticulum membrane;0.0216189724591845!GO:0000726;non-recombinational repair;0.0225694847158807!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0226385752212742!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0226385752212742!GO:0008637;apoptotic mitochondrial changes;0.0227926485627856!GO:0005853;eukaryotic translation elongation factor 1 complex;0.023025867234602!GO:0050790;regulation of catalytic activity;0.0230575778631907!GO:0051656;establishment of organelle localization;0.0231575521907041!GO:0008213;protein amino acid alkylation;0.0234017094390313!GO:0006479;protein amino acid methylation;0.0234017094390313!GO:0030663;COPI coated vesicle membrane;0.0234180571107493!GO:0030126;COPI vesicle coat;0.0234180571107493!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0244301809912963!GO:0010257;NADH dehydrogenase complex assembly;0.0244301809912963!GO:0033108;mitochondrial respiratory chain complex assembly;0.0244301809912963!GO:0051348;negative regulation of transferase activity;0.0244768677908652!GO:0006650;glycerophospholipid metabolic process;0.0246250516171764!GO:0005652;nuclear lamina;0.0248929095685524!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.025117343091497!GO:0005862;muscle thin filament tropomyosin;0.0251750283865121!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0254614750329632!GO:0016311;dephosphorylation;0.0258804473649358!GO:0046365;monosaccharide catabolic process;0.0259066197824234!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0263379140080125!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0269771513127304!GO:0008538;proteasome activator activity;0.0271103823640499!GO:0035267;NuA4 histone acetyltransferase complex;0.0276430160151408!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0279496000657641!GO:0045039;protein import into mitochondrial inner membrane;0.0279496000657641!GO:0022890;inorganic cation transmembrane transporter activity;0.0283328724693681!GO:0006376;mRNA splice site selection;0.0284921952228531!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0284921952228531!GO:0016790;thiolester hydrolase activity;0.0289077361155119!GO:0000790;nuclear chromatin;0.0289976552370348!GO:0006278;RNA-dependent DNA replication;0.0291614238146037!GO:0042769;DNA damage response, detection of DNA damage;0.0297452231763611!GO:0016407;acetyltransferase activity;0.0299707919903863!GO:0048037;cofactor binding;0.030057429844205!GO:0043624;cellular protein complex disassembly;0.0303279940660764!GO:0016563;transcription activator activity;0.0312202920664079!GO:0000175;3'-5'-exoribonuclease activity;0.031222145348838!GO:0009161;ribonucleoside monophosphate metabolic process;0.0315385385267487!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0315385385267487!GO:0032984;macromolecular complex disassembly;0.0318876346655784!GO:0006891;intra-Golgi vesicle-mediated transport;0.0326644317596023!GO:0001726;ruffle;0.0327376492418883!GO:0046128;purine ribonucleoside metabolic process;0.0329979938687563!GO:0042278;purine nucleoside metabolic process;0.0329979938687563!GO:0006607;NLS-bearing substrate import into nucleus;0.0331619993629644!GO:0030132;clathrin coat of coated pit;0.0336413404109897!GO:0016835;carbon-oxygen lyase activity;0.0345523702395248!GO:0051098;regulation of binding;0.03470847318185!GO:0046966;thyroid hormone receptor binding;0.03470847318185!GO:0005732;small nucleolar ribonucleoprotein complex;0.0347946307740793!GO:0031371;ubiquitin conjugating enzyme complex;0.0350495554514728!GO:0008097;5S rRNA binding;0.0353731509593702!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0354825202909698!GO:0043189;H4/H2A histone acetyltransferase complex;0.0355254785939968!GO:0016044;membrane organization and biogenesis;0.0356490906266631!GO:0030521;androgen receptor signaling pathway;0.0357396734241348!GO:0030029;actin filament-based process;0.0357543096988452!GO:0017166;vinculin binding;0.0360026881190157!GO:0007050;cell cycle arrest;0.0367122165934806!GO:0008156;negative regulation of DNA replication;0.0370103313521054!GO:0033673;negative regulation of kinase activity;0.037076185865923!GO:0006469;negative regulation of protein kinase activity;0.037076185865923!GO:0030137;COPI-coated vesicle;0.037275180928306!GO:0005784;translocon complex;0.0374894285328541!GO:0009119;ribonucleoside metabolic process;0.0383823356049034!GO:0043631;RNA polyadenylation;0.0394011146355379!GO:0004523;ribonuclease H activity;0.0395077490596602!GO:0046164;alcohol catabolic process;0.0395077490596602!GO:0016791;phosphoric monoester hydrolase activity;0.0396542404344625!GO:0032774;RNA biosynthetic process;0.0400719602962932!GO:0005658;alpha DNA polymerase:primase complex;0.0401485259298402!GO:0008234;cysteine-type peptidase activity;0.0404887716466182!GO:0009066;aspartate family amino acid metabolic process;0.040537012682338!GO:0009113;purine base biosynthetic process;0.0406269087013051!GO:0017134;fibroblast growth factor binding;0.0406394572118212!GO:0007018;microtubule-based movement;0.0408013308067482!GO:0019320;hexose catabolic process;0.0408013308067482!GO:0004721;phosphoprotein phosphatase activity;0.04254373913614!GO:0000123;histone acetyltransferase complex;0.0429963888573319!GO:0009083;branched chain family amino acid catabolic process;0.0430301172277783!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0430498313653132!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0445831080984406!GO:0006096;glycolysis;0.0446970152238148!GO:0046489;phosphoinositide biosynthetic process;0.0450105921435312!GO:0006984;ER-nuclear signaling pathway;0.0454570099518522!GO:0019904;protein domain specific binding;0.045677527174929!GO:0005996;monosaccharide metabolic process;0.0457881133193894!GO:0008610;lipid biosynthetic process;0.0460187988744057!GO:0046426;negative regulation of JAK-STAT cascade;0.0466201758832597!GO:0046112;nucleobase biosynthetic process;0.0467458517678858!GO:0031529;ruffle organization and biogenesis;0.0467458517678858!GO:0006351;transcription, DNA-dependent;0.0467458517678858!GO:0051320;S phase;0.0473285415192148!GO:0030496;midbody;0.0480301358824263!GO:0008276;protein methyltransferase activity;0.0483209302722865!GO:0043130;ubiquitin binding;0.0483209302722865!GO:0032182;small conjugating protein binding;0.0483209302722865!GO:0008143;poly(A) binding;0.0484850783896959!GO:0009064;glutamine family amino acid metabolic process;0.0492326055934111!GO:0016585;chromatin remodeling complex;0.0492825278518087!GO:0022411;cellular component disassembly;0.0493692811186834!GO:0043241;protein complex disassembly;0.049509909162292!GO:0006189;'de novo' IMP biosynthetic process;0.0499358555914797!GO:0006188;IMP biosynthetic process;0.0499358555914797!GO:0046040;IMP metabolic process;0.0499358555914797!GO:0003677;DNA binding;0.0499358555914797 | |||
|sample_id=13437 | |sample_id=13437 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 99: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|time= day00 | |||
|timecourse=Human_iPS_to_neuron_(wt)_2 | |||
|top_motifs=OCT4_SOX2{dimer}:3.70658150831;POU2F1..3:2.40284466901;SOX{8,9,10}:2.06234533895;NFY{A,B,C}:1.99987753593;E2F1..5:1.78589498924;FOXM1:1.72383992213;SNAI1..3:1.65323259242;PBX1:1.59256171083;GFI1:1.53279507576;ALX1:1.4846364112;ARID5B:1.47290431877;YY1:1.38416982139;UFEwm:1.35983986516;CDX1,2,4:1.35639401915;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.33266149788;CDC5L:1.32204860513;ZNF384:1.29508066191;ZNF143:1.25276510097;TOPORS:1.24003768598;FOX{I1,J2}:1.23112549942;LMO2:1.19897139974;FOXD3:1.19264078594;KLF4:1.15879702296;ONECUT1,2:1.15565809765;PATZ1:1.11671632992;SP1:1.0929515358;ZEB1:1.08568205478;PAX8:1.06780111019;CUX2:1.05602572053;RORA:1.04779911904;SOX2:1.04753192555;IKZF2:1.0087678056;MYOD1:0.968243633943;AIRE:0.952168581182;XCPE1{core}:0.900105501251;ZBTB16:0.899616422095;EVI1:0.891377919269;RBPJ:0.876020398473;NRF1:0.841202069577;ZIC1..3:0.801266600931;ATF4:0.754403049101;PITX1..3:0.725699064044;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.707311790232;HIF1A:0.689404325379;ELK1,4_GABP{A,B1}:0.66430536129;SOX17:0.652426704722;bHLH_family:0.632506277046;MZF1:0.625544003862;NKX2-2,8:0.600593073722;ALX4:0.566678599879;TBP:0.562611672425;GATA4:0.547334948551;T:0.543681340944;FOXQ1:0.492168115803;EBF1:0.479103286036;HOX{A4,D4}:0.450739329695;TFDP1:0.442746829043;POU3F1..4:0.428136552579;NKX6-1,2:0.386821925959;FOXP1:0.380158692176;ZBTB6:0.328066135036;PAX1,9:0.325979567217;TBX4,5:0.324704123962;NR5A1,2:0.309931102353;MYB:0.298665807548;STAT5{A,B}:0.23888083293;FOXL1:0.217095815731;LEF1_TCF7_TCF7L1,2:0.206165331658;REST:0.204248712245;NKX3-1:0.196230693592;LHX3,4:0.191402209771;HAND1,2:0.173607864695;NANOG{mouse}:0.169035973752;CREB1:0.158499935079;HOX{A6,A7,B6,B7}:0.149734578168;TP53:0.142567629002;ZFP161:0.111641457283;GFI1B:0.0781185096679;VSX1,2:0.0742736511663;TEAD1:0.0620714659012;STAT1,3:0.0422845260575;MYFfamily:0.0325023802984;HNF4A_NR2F1,2:-0.0248758016425;NR6A1:-0.0379096862669;CRX:-0.0590905583696;NKX2-1,4:-0.0691133273453;NKX2-3_NKX2-5:-0.0746167888042;MAZ:-0.0807440919135;JUN:-0.0820377558768;POU5F1:-0.0866233115337;MTF1:-0.100943896691;ESRRA:-0.103745722878;FOXN1:-0.13717529705;MTE{core}:-0.145083227716;ESR1:-0.157285295722;FOXO1,3,4:-0.17660331188;PRDM1:-0.188817552564;BREu{core}:-0.191552003583;RFX1:-0.203115230187;XBP1:-0.213022813211;ATF5_CREB3:-0.221987551345;PAX4:-0.229226979266;HOX{A5,B5}:-0.253755320518;ZNF423:-0.2721368271;HNF1A:-0.280800381877;NFKB1_REL_RELA:-0.285386959171;HMGA1,2:-0.309884892854;HIC1:-0.348464409476;NFE2L1:-0.35305909892;ATF2:-0.386890378214;SPZ1:-0.411043529282;POU6F1:-0.413446670064;PAX5:-0.415088226974;RREB1:-0.431000528737;HMX1:-0.434905084624;NANOG:-0.43879475892;RFX2..5_RFXANK_RFXAP:-0.450942555427;RXR{A,B,G}:-0.454910821287;GTF2I:-0.464195037989;EN1,2:-0.470695763889;DMAP1_NCOR{1,2}_SMARC:-0.479729276744;NHLH1,2:-0.491096420133;MED-1{core}:-0.500293048528;PAX2:-0.505887397697;FOX{F1,F2,J1}:-0.511942165268;GATA6:-0.532038414248;SPI1:-0.557107887375;GCM1,2:-0.578655750814;BACH2:-0.589227056506;NR1H4:-0.616248675398;TFAP2B:-0.637603746777;TLX2:-0.641154084538;TFAP2{A,C}:-0.650893754566;SPIB:-0.658113417652;MYBL2:-0.675505930101;HSF1,2:-0.680375860914;NKX3-2:-0.700635524831;PAX3,7:-0.704432550107;MEF2{A,B,C,D}:-0.718623533844;NFE2L2:-0.725636856395;FOXP3:-0.731926856766;TEF:-0.741173129354;SREBF1,2:-0.746075555123;POU1F1:-0.748640116887;FOX{D1,D2}:-0.76265336939;NFE2:-0.776321737317;IKZF1:-0.788190778061;RXRA_VDR{dimer}:-0.79088293364;FOS_FOS{B,L1}_JUN{B,D}:-0.790952733821;AR:-0.804857013803;SRF:-0.811127423068;TFAP4:-0.813960044076;NFIX:-0.815996817801;RUNX1..3:-0.824571949938;DBP:-0.8689696891;AHR_ARNT_ARNT2:-0.87449467787;BPTF:-0.941507479988;EGR1..3:-0.945106985665;FOSL2:-0.949802977137;TFCP2:-0.986854101208;ELF1,2,4:-0.999594887032;SOX5:-1.00953206339;GTF2A1,2:-1.04450184588;HLF:-1.04629021875;NR3C1:-1.06146785394;ZNF238:-1.09202414544;HBP1_HMGB_SSRP1_UBTF:-1.15603514203;IRF1,2:-1.16096486331;ETS1,2:-1.16523939015;ZNF148:-1.19487948226;HES1:-1.26299888721;IRF7:-1.30533456968;GZF1:-1.3166059819;GLI1..3:-1.32018069655;NFIL3:-1.3962124098;PRRX1,2:-1.44512676417;FOXA2:-1.47995114662;CEBPA,B_DDIT3:-1.48256359873;STAT2,4,6:-1.50616615697;TAL1_TCF{3,4,12}:-1.59297997819;NFATC1..3:-1.63635070782;ADNP_IRX_SIX_ZHX:-1.65324471722;EP300:-1.74620134881;PAX6:-1.79713437317;TLX1..3_NFIC{dimer}:-1.79919658934;ATF6:-1.82040749598;SMAD1..7,9:-1.84038436317;PDX1:-1.84254183767;TGIF1:-1.95443901996;MAFB:-2.08345472166;HOXA9_MEIS1:-2.09904656777;PPARG:-2.14476663193 | |top_motifs=OCT4_SOX2{dimer}:3.70658150831;POU2F1..3:2.40284466901;SOX{8,9,10}:2.06234533895;NFY{A,B,C}:1.99987753593;E2F1..5:1.78589498924;FOXM1:1.72383992213;SNAI1..3:1.65323259242;PBX1:1.59256171083;GFI1:1.53279507576;ALX1:1.4846364112;ARID5B:1.47290431877;YY1:1.38416982139;UFEwm:1.35983986516;CDX1,2,4:1.35639401915;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.33266149788;CDC5L:1.32204860513;ZNF384:1.29508066191;ZNF143:1.25276510097;TOPORS:1.24003768598;FOX{I1,J2}:1.23112549942;LMO2:1.19897139974;FOXD3:1.19264078594;KLF4:1.15879702296;ONECUT1,2:1.15565809765;PATZ1:1.11671632992;SP1:1.0929515358;ZEB1:1.08568205478;PAX8:1.06780111019;CUX2:1.05602572053;RORA:1.04779911904;SOX2:1.04753192555;IKZF2:1.0087678056;MYOD1:0.968243633943;AIRE:0.952168581182;XCPE1{core}:0.900105501251;ZBTB16:0.899616422095;EVI1:0.891377919269;RBPJ:0.876020398473;NRF1:0.841202069577;ZIC1..3:0.801266600931;ATF4:0.754403049101;PITX1..3:0.725699064044;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.707311790232;HIF1A:0.689404325379;ELK1,4_GABP{A,B1}:0.66430536129;SOX17:0.652426704722;bHLH_family:0.632506277046;MZF1:0.625544003862;NKX2-2,8:0.600593073722;ALX4:0.566678599879;TBP:0.562611672425;GATA4:0.547334948551;T:0.543681340944;FOXQ1:0.492168115803;EBF1:0.479103286036;HOX{A4,D4}:0.450739329695;TFDP1:0.442746829043;POU3F1..4:0.428136552579;NKX6-1,2:0.386821925959;FOXP1:0.380158692176;ZBTB6:0.328066135036;PAX1,9:0.325979567217;TBX4,5:0.324704123962;NR5A1,2:0.309931102353;MYB:0.298665807548;STAT5{A,B}:0.23888083293;FOXL1:0.217095815731;LEF1_TCF7_TCF7L1,2:0.206165331658;REST:0.204248712245;NKX3-1:0.196230693592;LHX3,4:0.191402209771;HAND1,2:0.173607864695;NANOG{mouse}:0.169035973752;CREB1:0.158499935079;HOX{A6,A7,B6,B7}:0.149734578168;TP53:0.142567629002;ZFP161:0.111641457283;GFI1B:0.0781185096679;VSX1,2:0.0742736511663;TEAD1:0.0620714659012;STAT1,3:0.0422845260575;MYFfamily:0.0325023802984;HNF4A_NR2F1,2:-0.0248758016425;NR6A1:-0.0379096862669;CRX:-0.0590905583696;NKX2-1,4:-0.0691133273453;NKX2-3_NKX2-5:-0.0746167888042;MAZ:-0.0807440919135;JUN:-0.0820377558768;POU5F1:-0.0866233115337;MTF1:-0.100943896691;ESRRA:-0.103745722878;FOXN1:-0.13717529705;MTE{core}:-0.145083227716;ESR1:-0.157285295722;FOXO1,3,4:-0.17660331188;PRDM1:-0.188817552564;BREu{core}:-0.191552003583;RFX1:-0.203115230187;XBP1:-0.213022813211;ATF5_CREB3:-0.221987551345;PAX4:-0.229226979266;HOX{A5,B5}:-0.253755320518;ZNF423:-0.2721368271;HNF1A:-0.280800381877;NFKB1_REL_RELA:-0.285386959171;HMGA1,2:-0.309884892854;HIC1:-0.348464409476;NFE2L1:-0.35305909892;ATF2:-0.386890378214;SPZ1:-0.411043529282;POU6F1:-0.413446670064;PAX5:-0.415088226974;RREB1:-0.431000528737;HMX1:-0.434905084624;NANOG:-0.43879475892;RFX2..5_RFXANK_RFXAP:-0.450942555427;RXR{A,B,G}:-0.454910821287;GTF2I:-0.464195037989;EN1,2:-0.470695763889;DMAP1_NCOR{1,2}_SMARC:-0.479729276744;NHLH1,2:-0.491096420133;MED-1{core}:-0.500293048528;PAX2:-0.505887397697;FOX{F1,F2,J1}:-0.511942165268;GATA6:-0.532038414248;SPI1:-0.557107887375;GCM1,2:-0.578655750814;BACH2:-0.589227056506;NR1H4:-0.616248675398;TFAP2B:-0.637603746777;TLX2:-0.641154084538;TFAP2{A,C}:-0.650893754566;SPIB:-0.658113417652;MYBL2:-0.675505930101;HSF1,2:-0.680375860914;NKX3-2:-0.700635524831;PAX3,7:-0.704432550107;MEF2{A,B,C,D}:-0.718623533844;NFE2L2:-0.725636856395;FOXP3:-0.731926856766;TEF:-0.741173129354;SREBF1,2:-0.746075555123;POU1F1:-0.748640116887;FOX{D1,D2}:-0.76265336939;NFE2:-0.776321737317;IKZF1:-0.788190778061;RXRA_VDR{dimer}:-0.79088293364;FOS_FOS{B,L1}_JUN{B,D}:-0.790952733821;AR:-0.804857013803;SRF:-0.811127423068;TFAP4:-0.813960044076;NFIX:-0.815996817801;RUNX1..3:-0.824571949938;DBP:-0.8689696891;AHR_ARNT_ARNT2:-0.87449467787;BPTF:-0.941507479988;EGR1..3:-0.945106985665;FOSL2:-0.949802977137;TFCP2:-0.986854101208;ELF1,2,4:-0.999594887032;SOX5:-1.00953206339;GTF2A1,2:-1.04450184588;HLF:-1.04629021875;NR3C1:-1.06146785394;ZNF238:-1.09202414544;HBP1_HMGB_SSRP1_UBTF:-1.15603514203;IRF1,2:-1.16096486331;ETS1,2:-1.16523939015;ZNF148:-1.19487948226;HES1:-1.26299888721;IRF7:-1.30533456968;GZF1:-1.3166059819;GLI1..3:-1.32018069655;NFIL3:-1.3962124098;PRRX1,2:-1.44512676417;FOXA2:-1.47995114662;CEBPA,B_DDIT3:-1.48256359873;STAT2,4,6:-1.50616615697;TAL1_TCF{3,4,12}:-1.59297997819;NFATC1..3:-1.63635070782;ADNP_IRX_SIX_ZHX:-1.65324471722;EP300:-1.74620134881;PAX6:-1.79713437317;TLX1..3_NFIC{dimer}:-1.79919658934;ATF6:-1.82040749598;SMAD1..7,9:-1.84038436317;PDX1:-1.84254183767;TGIF1:-1.95443901996;MAFB:-2.08345472166;HOXA9_MEIS1:-2.09904656777;PPARG:-2.14476663193 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13437-144E8;search_select_hide=table117:FF:13437-144E8 | |||
}} | }} | ||
Latest revision as of 18:59, 4 June 2020
| Name: | iPS differentiation to neuron, control donor C32-CRL1502 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13839 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13839
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13839
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.32 |
| 10 | 10 | 0.516 |
| 100 | 100 | 0.495 |
| 101 | 101 | 0.788 |
| 102 | 102 | 0.59 |
| 103 | 103 | 0.11 |
| 104 | 104 | 0.64 |
| 105 | 105 | 0.0434 |
| 106 | 106 | 0.0498 |
| 107 | 107 | 0.29 |
| 108 | 108 | 0.901 |
| 109 | 109 | 0.472 |
| 11 | 11 | 0.353 |
| 110 | 110 | 0.596 |
| 111 | 111 | 0.0934 |
| 112 | 112 | 0.568 |
| 113 | 113 | 0.0503 |
| 114 | 114 | 0.0931 |
| 115 | 115 | 0.0343 |
| 116 | 116 | 0.601 |
| 117 | 117 | 0.865 |
| 118 | 118 | 0.648 |
| 119 | 119 | 0.278 |
| 12 | 12 | 0.887 |
| 120 | 120 | 0.364 |
| 121 | 121 | 0.448 |
| 122 | 122 | 0.492 |
| 123 | 123 | 0.58 |
| 124 | 124 | 0.165 |
| 125 | 125 | 0.481 |
| 126 | 126 | 0.438 |
| 127 | 127 | 0.394 |
| 128 | 128 | 0.373 |
| 129 | 129 | 0.469 |
| 13 | 13 | 0.652 |
| 130 | 130 | 0.863 |
| 131 | 131 | 0.735 |
| 132 | 132 | 0.911 |
| 133 | 133 | 0.0689 |
| 134 | 134 | 0.345 |
| 135 | 135 | 0.00605 |
| 136 | 136 | 0.0506 |
| 137 | 137 | 0.342 |
| 138 | 138 | 0.126 |
| 139 | 139 | 0.022 |
| 14 | 14 | 0.459 |
| 140 | 140 | 0.241 |
| 141 | 141 | 0.828 |
| 142 | 142 | 0.352 |
| 143 | 143 | 0.0103 |
| 144 | 144 | 0.612 |
| 145 | 145 | 0.571 |
| 146 | 146 | 0.268 |
| 147 | 147 | 0.687 |
| 148 | 148 | 0.0997 |
| 149 | 149 | 0.0976 |
| 15 | 15 | 0.102 |
| 150 | 150 | 0.95 |
| 151 | 151 | 0.0298 |
| 152 | 152 | 0.365 |
| 153 | 153 | 0.16 |
| 154 | 154 | 0.531 |
| 155 | 155 | 0.899 |
| 156 | 156 | 0.5 |
| 157 | 157 | 0.661 |
| 158 | 158 | 0.101 |
| 159 | 159 | 0.158 |
| 16 | 16 | 0.564 |
| 160 | 160 | 0.498 |
| 161 | 161 | 0.844 |
| 162 | 162 | 0.227 |
| 163 | 163 | 0.407 |
| 164 | 164 | 0.668 |
| 165 | 165 | 0.61 |
| 166 | 166 | 0.867 |
| 167 | 167 | 0.215 |
| 168 | 168 | 0.516 |
| 169 | 169 | 0.00216 |
| 17 | 17 | 0.225 |
| 18 | 18 | 0.177 |
| 19 | 19 | 0.25 |
| 2 | 2 | 0.414 |
| 20 | 20 | 0.907 |
| 21 | 21 | 0.973 |
| 22 | 22 | 0.0639 |
| 23 | 23 | 0.00708 |
| 24 | 24 | 0.949 |
| 25 | 25 | 0.696 |
| 26 | 26 | 0.908 |
| 27 | 27 | 0.42 |
| 28 | 28 | 0.965 |
| 29 | 29 | 0.97 |
| 3 | 3 | 0.263 |
| 30 | 30 | 0.688 |
| 31 | 31 | 0.86 |
| 32 | 32 | 0.268 |
| 33 | 33 | 0.812 |
| 34 | 34 | 0.421 |
| 35 | 35 | 0.414 |
| 36 | 36 | 0.924 |
| 37 | 37 | 0.411 |
| 38 | 38 | 0.309 |
| 39 | 39 | 0.942 |
| 4 | 4 | 0.45 |
| 40 | 40 | 0.542 |
| 41 | 41 | 0.0763 |
| 42 | 42 | 0.315 |
| 43 | 43 | 0.119 |
| 44 | 44 | 0.335 |
| 45 | 45 | 0.244 |
| 46 | 46 | 0.16 |
| 47 | 47 | 0.707 |
| 48 | 48 | 0.946 |
| 49 | 49 | 0.0718 |
| 5 | 5 | 0.0835 |
| 50 | 50 | 0.997 |
| 51 | 51 | 0.539 |
| 52 | 52 | 0.308 |
| 53 | 53 | 0.315 |
| 54 | 54 | 0.33 |
| 55 | 55 | 0.0277 |
| 56 | 56 | 0.573 |
| 57 | 57 | 0.53 |
| 58 | 58 | 0.105 |
| 59 | 59 | 0.418 |
| 6 | 6 | 0.7 |
| 60 | 60 | 0.0568 |
| 61 | 61 | 0.746 |
| 62 | 62 | 0.0568 |
| 63 | 63 | 0.184 |
| 64 | 64 | 0.693 |
| 65 | 65 | 0.0871 |
| 66 | 66 | 0.681 |
| 67 | 67 | 0.308 |
| 68 | 68 | 0.837 |
| 69 | 69 | 0.669 |
| 7 | 7 | 0.486 |
| 70 | 70 | 0.0274 |
| 71 | 71 | 0.206 |
| 72 | 72 | 0.417 |
| 73 | 73 | 0.208 |
| 74 | 74 | 0.857 |
| 75 | 75 | 0.451 |
| 76 | 76 | 0.619 |
| 77 | 77 | 0.335 |
| 78 | 78 | 0.637 |
| 79 | 79 | 0.49 |
| 8 | 8 | 0.294 |
| 80 | 80 | 0.0657 |
| 81 | 81 | 0.439 |
| 82 | 82 | 0.156 |
| 83 | 83 | 0.748 |
| 84 | 84 | 0.725 |
| 85 | 85 | 0.0632 |
| 86 | 86 | 0.795 |
| 87 | 87 | 0.0465 |
| 88 | 88 | 0.799 |
| 89 | 89 | 0.198 |
| 9 | 9 | 0.0806 |
| 90 | 90 | 0.547 |
| 91 | 91 | 0.166 |
| 92 | 92 | 0.0321 |
| 93 | 93 | 0.235 |
| 94 | 94 | 0.146 |
| 95 | 95 | 0.747 |
| 96 | 96 | 0.0662 |
| 97 | 97 | 0.514 |
| 98 | 98 | 0.293 |
| 99 | 99 | 0.639 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13839
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200005 (iPS differentiation to neuron sample)
0200003 (iPS differentiation to neuron, control sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)
