FF:10029-101E2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005452 | ||
|accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435;DRZ012400;DRZ013785 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010029 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10029-101E2 | |id=FF:10029-101E2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010029 | ||
|is_obsolete= | |||
|library_id=CNhs10635 | |||
|library_id_phase_based=2:CNhs10635 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10029 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10029 | |||
|name=trachea, adult, pool1 | |name=trachea, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10635,LSID657,release008,COMPLETED | |profile_hcage=CNhs10635,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -20 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -20 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+04 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.41190878893976e-253!GO:0005737;cytoplasm;2.60364415917423e-188!GO:0044444;cytoplasmic part;7.02561920711904e-114!GO:0043226;organelle;3.73413701042173e-109!GO:0043229;intracellular organelle;9.49791170589749e-109!GO:0005515;protein binding;2.97402329392566e-105!GO:0043227;membrane-bound organelle;1.71002696671371e-91!GO:0043231;intracellular membrane-bound organelle;2.25282539001272e-91!GO:0044422;organelle part;3.15323707013977e-83!GO:0044446;intracellular organelle part;1.70090039730193e-81!GO:0032991;macromolecular complex;3.61716843401976e-58!GO:0030529;ribonucleoprotein complex;3.62316463532574e-49!GO:0003723;RNA binding;2.64765890950488e-41!GO:0016043;cellular component organization and biogenesis;7.10542895450743e-41!GO:0019538;protein metabolic process;9.37152136961839e-41!GO:0031090;organelle membrane;1.63791554972727e-39!GO:0033036;macromolecule localization;1.66162787742296e-37!GO:0043233;organelle lumen;1.7231860338071e-37!GO:0031974;membrane-enclosed lumen;1.7231860338071e-37!GO:0015031;protein transport;7.28712430898845e-36!GO:0045184;establishment of protein localization;1.41506233508735e-35!GO:0044260;cellular macromolecule metabolic process;1.99158787654605e-35!GO:0008104;protein localization;2.92649084684753e-35!GO:0005829;cytosol;7.57032409217199e-35!GO:0044428;nuclear part;9.35448614775429e-35!GO:0044237;cellular metabolic process;1.32620513901774e-34!GO:0044267;cellular protein metabolic process;1.61373911133449e-34!GO:0044238;primary metabolic process;3.82122159431078e-34!GO:0043170;macromolecule metabolic process;1.22908228576987e-31!GO:0005739;mitochondrion;2.65327394672869e-31!GO:0006412;translation;9.63003417385615e-31!GO:0005840;ribosome;3.68878137690439e-30!GO:0043234;protein complex;6.1844428465291e-30!GO:0046907;intracellular transport;2.42742747839629e-27!GO:0009059;macromolecule biosynthetic process;1.96738141773029e-26!GO:0003735;structural constituent of ribosome;2.66564276425072e-26!GO:0009058;biosynthetic process;3.0779004072463e-26!GO:0016071;mRNA metabolic process;1.12992845772868e-24!GO:0006886;intracellular protein transport;2.12447615169457e-24!GO:0043228;non-membrane-bound organelle;1.45995285379364e-23!GO:0043232;intracellular non-membrane-bound organelle;1.45995285379364e-23!GO:0031967;organelle envelope;1.59406316483688e-23!GO:0006396;RNA processing;1.96938195301159e-23!GO:0033279;ribosomal subunit;2.12086051989085e-23!GO:0031975;envelope;2.79510609252535e-23!GO:0044429;mitochondrial part;1.02959178909763e-22!GO:0008380;RNA splicing;2.30060381759474e-22!GO:0065003;macromolecular complex assembly;2.53209022855134e-22!GO:0044249;cellular biosynthetic process;2.80611228739764e-22!GO:0005783;endoplasmic reticulum;4.6263894900769e-22!GO:0031981;nuclear lumen;1.52879450364144e-21!GO:0022607;cellular component assembly;3.50539634834865e-21!GO:0006397;mRNA processing;2.31595957959791e-20!GO:0005634;nucleus;3.10853521435253e-20!GO:0048770;pigment granule;5.3886791455951e-20!GO:0042470;melanosome;5.3886791455951e-20!GO:0012505;endomembrane system;1.08151677471955e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.88566594077732e-19!GO:0005794;Golgi apparatus;1.73790532044542e-18!GO:0051649;establishment of cellular localization;4.27653005715087e-18!GO:0051641;cellular localization;5.34659735061045e-18!GO:0044445;cytosolic part;2.28272600099006e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.88192588882706e-17!GO:0008134;transcription factor binding;8.81177179776524e-17!GO:0012501;programmed cell death;3.05995974992097e-16!GO:0006915;apoptosis;4.01698678887975e-16!GO:0005740;mitochondrial envelope;6.25551643853789e-16!GO:0005681;spliceosome;6.35885760511343e-16!GO:0006119;oxidative phosphorylation;9.90670484424131e-16!GO:0006996;organelle organization and biogenesis;1.33202014663588e-15!GO:0031966;mitochondrial membrane;2.37438589415954e-15!GO:0044432;endoplasmic reticulum part;6.1456310445102e-15!GO:0008219;cell death;7.16201433588666e-15!GO:0016265;death;7.16201433588666e-15!GO:0016192;vesicle-mediated transport;8.24897305459993e-15!GO:0019866;organelle inner membrane;9.90033645579644e-15!GO:0006457;protein folding;3.63029751494431e-14!GO:0008092;cytoskeletal protein binding;4.56033675209888e-14!GO:0005743;mitochondrial inner membrane;8.65131019424164e-14!GO:0048523;negative regulation of cellular process;1.27914564783717e-13!GO:0000166;nucleotide binding;1.37474139814613e-13!GO:0044265;cellular macromolecule catabolic process;1.83884075516223e-13!GO:0022618;protein-RNA complex assembly;2.42659410380556e-13!GO:0015935;small ribosomal subunit;4.3012992006968e-13!GO:0016462;pyrophosphatase activity;9.6375248538075e-13!GO:0043285;biopolymer catabolic process;1.03299781296363e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.06467100766782e-12!GO:0005654;nucleoplasm;1.31656608695932e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.50733618955577e-12!GO:0048519;negative regulation of biological process;1.56300022303296e-12!GO:0048193;Golgi vesicle transport;1.87446205206466e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.8887187424533e-12!GO:0017111;nucleoside-triphosphatase activity;2.76974933432144e-12!GO:0006605;protein targeting;3.81771989312938e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.55104237135673e-12!GO:0009057;macromolecule catabolic process;7.52082580514888e-12!GO:0019941;modification-dependent protein catabolic process;7.72153325892152e-12!GO:0043632;modification-dependent macromolecule catabolic process;7.72153325892152e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.59485691400903e-12!GO:0030163;protein catabolic process;9.51022274710366e-12!GO:0030036;actin cytoskeleton organization and biogenesis;1.68129015068823e-11!GO:0044257;cellular protein catabolic process;1.80410050556204e-11!GO:0015934;large ribosomal subunit;3.03055424035659e-11!GO:0005746;mitochondrial respiratory chain;3.85947592485995e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.88579124350615e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.09700535293724e-11!GO:0006461;protein complex assembly;6.84747771536868e-11!GO:0044455;mitochondrial membrane part;6.85415687444328e-11!GO:0043283;biopolymer metabolic process;6.85415687444328e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.85181436512127e-11!GO:0005789;endoplasmic reticulum membrane;1.00451652209761e-10!GO:0005793;ER-Golgi intermediate compartment;1.08423087500242e-10!GO:0031982;vesicle;1.1494932587657e-10!GO:0008135;translation factor activity, nucleic acid binding;1.54789890671187e-10!GO:0044451;nucleoplasm part;1.58028078518708e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.60473356879299e-10!GO:0003954;NADH dehydrogenase activity;1.60473356879299e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.60473356879299e-10!GO:0044248;cellular catabolic process;1.94112920802255e-10!GO:0003712;transcription cofactor activity;2.24212495913385e-10!GO:0010467;gene expression;2.26513985971281e-10!GO:0030029;actin filament-based process;2.97723872790327e-10!GO:0017076;purine nucleotide binding;3.62801133006263e-10!GO:0031988;membrane-bound vesicle;3.7846997729691e-10!GO:0031410;cytoplasmic vesicle;4.53582270281429e-10!GO:0042981;regulation of apoptosis;5.75161450271322e-10!GO:0051082;unfolded protein binding;6.51247856558162e-10!GO:0006950;response to stress;6.8057346522798e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.92230733830049e-10!GO:0032553;ribonucleotide binding;8.09273168488943e-10!GO:0032555;purine ribonucleotide binding;8.09273168488943e-10!GO:0016874;ligase activity;9.80054353313413e-10!GO:0016023;cytoplasmic membrane-bound vesicle;1.19171399643488e-09!GO:0043067;regulation of programmed cell death;1.45071903127457e-09!GO:0003779;actin binding;1.5308355427807e-09!GO:0008565;protein transporter activity;1.55031673060803e-09!GO:0005730;nucleolus;1.80707266253736e-09!GO:0006366;transcription from RNA polymerase II promoter;2.02858548083883e-09!GO:0043412;biopolymer modification;2.11385128095588e-09!GO:0031980;mitochondrial lumen;2.62095402293922e-09!GO:0005759;mitochondrial matrix;2.62095402293922e-09!GO:0005768;endosome;3.44573832951215e-09!GO:0006446;regulation of translational initiation;3.65965525749889e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.79372747637791e-09!GO:0006913;nucleocytoplasmic transport;3.90753195003771e-09!GO:0006464;protein modification process;6.0500836150859e-09!GO:0030964;NADH dehydrogenase complex (quinone);8.36594128987432e-09!GO:0045271;respiratory chain complex I;8.36594128987432e-09!GO:0005747;mitochondrial respiratory chain complex I;8.36594128987432e-09!GO:0003743;translation initiation factor activity;8.88425704264857e-09!GO:0051246;regulation of protein metabolic process;9.0157566978518e-09!GO:0042775;organelle ATP synthesis coupled electron transport;9.0157566978518e-09!GO:0042773;ATP synthesis coupled electron transport;9.0157566978518e-09!GO:0051169;nuclear transport;1.05207871402558e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.3710879766106e-08!GO:0006413;translational initiation;1.42290855761486e-08!GO:0051186;cofactor metabolic process;2.81460087795004e-08!GO:0005635;nuclear envelope;3.19122436837979e-08!GO:0031252;leading edge;3.39664228740442e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;3.82623745509104e-08!GO:0000375;RNA splicing, via transesterification reactions;3.82623745509104e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.82623745509104e-08!GO:0003924;GTPase activity;4.58307682414313e-08!GO:0043069;negative regulation of programmed cell death;5.25752550580774e-08!GO:0016604;nuclear body;5.94942137991534e-08!GO:0043066;negative regulation of apoptosis;6.14069839802559e-08!GO:0044431;Golgi apparatus part;6.90945687227104e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.0277513470964e-07!GO:0006512;ubiquitin cycle;1.16506345706448e-07!GO:0009055;electron carrier activity;1.17145232832633e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.31708724094719e-07!GO:0016564;transcription repressor activity;1.37965386419411e-07!GO:0005761;mitochondrial ribosome;1.42414190559576e-07!GO:0000313;organellar ribosome;1.42414190559576e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.68043703022662e-07!GO:0048522;positive regulation of cellular process;2.17567449626033e-07!GO:0017038;protein import;3.30031903186651e-07!GO:0016607;nuclear speck;3.75863786351312e-07!GO:0043687;post-translational protein modification;3.78544230385354e-07!GO:0031965;nuclear membrane;4.32187139805913e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.87186395564969e-07!GO:0019829;cation-transporting ATPase activity;5.09828838060718e-07!GO:0051789;response to protein stimulus;5.25003814322108e-07!GO:0006986;response to unfolded protein;5.25003814322108e-07!GO:0005773;vacuole;6.01912766540661e-07!GO:0005525;GTP binding;6.36144690372902e-07!GO:0006916;anti-apoptosis;6.39106702121731e-07!GO:0009060;aerobic respiration;6.61092929759795e-07!GO:0007243;protein kinase cascade;6.85736568707217e-07!GO:0009150;purine ribonucleotide metabolic process;6.93847671995913e-07!GO:0048518;positive regulation of biological process;7.05716168098989e-07!GO:0019899;enzyme binding;7.52390730016553e-07!GO:0006732;coenzyme metabolic process;7.68365509258502e-07!GO:0009259;ribonucleotide metabolic process;7.81941039649321e-07!GO:0006163;purine nucleotide metabolic process;8.48160137332703e-07!GO:0009056;catabolic process;1.02335033887018e-06!GO:0045333;cellular respiration;1.20745448253569e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.30349880885894e-06!GO:0030120;vesicle coat;1.38760938750928e-06!GO:0030662;coated vesicle membrane;1.38760938750928e-06!GO:0048475;coated membrane;1.68024277889153e-06!GO:0030117;membrane coat;1.68024277889153e-06!GO:0006793;phosphorus metabolic process;2.04408045169104e-06!GO:0006796;phosphate metabolic process;2.04408045169104e-06!GO:0009141;nucleoside triphosphate metabolic process;2.08121830908309e-06!GO:0007264;small GTPase mediated signal transduction;2.08388474882235e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.08388474882235e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.08388474882235e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.31930006902853e-06!GO:0030554;adenyl nucleotide binding;2.39541989639956e-06!GO:0031324;negative regulation of cellular metabolic process;2.52786057507292e-06!GO:0015986;ATP synthesis coupled proton transport;2.52974691531947e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.52974691531947e-06!GO:0016044;membrane organization and biogenesis;2.93448104128711e-06!GO:0005524;ATP binding;3.22230204884467e-06!GO:0015629;actin cytoskeleton;3.46007403041898e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.52973272675206e-06!GO:0000323;lytic vacuole;3.55825166653434e-06!GO:0005764;lysosome;3.55825166653434e-06!GO:0003714;transcription corepressor activity;3.65872499071683e-06!GO:0008639;small protein conjugating enzyme activity;3.66143759005012e-06!GO:0007010;cytoskeleton organization and biogenesis;3.66143759005012e-06!GO:0006099;tricarboxylic acid cycle;3.6822367399634e-06!GO:0046356;acetyl-CoA catabolic process;3.6822367399634e-06!GO:0000139;Golgi membrane;3.84840057426213e-06!GO:0032559;adenyl ribonucleotide binding;4.18103318809258e-06!GO:0051170;nuclear import;4.33663802398414e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.58876690968755e-06!GO:0004842;ubiquitin-protein ligase activity;5.11975808630645e-06!GO:0006606;protein import into nucleus;5.88753303042013e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.18069251570038e-06!GO:0009892;negative regulation of metabolic process;6.2305857472444e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.34670075165175e-06!GO:0005856;cytoskeleton;7.9417114482197e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.34848676909467e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.47039322670955e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.47039322670955e-06!GO:0006164;purine nucleotide biosynthetic process;8.63541825345436e-06!GO:0019787;small conjugating protein ligase activity;8.94864203131936e-06!GO:0005788;endoplasmic reticulum lumen;9.33218894293522e-06!GO:0009142;nucleoside triphosphate biosynthetic process;9.50159803216562e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.50159803216562e-06!GO:0042802;identical protein binding;9.96353444071085e-06!GO:0032561;guanyl ribonucleotide binding;9.96353444071085e-06!GO:0019001;guanyl nucleotide binding;9.96353444071085e-06!GO:0009109;coenzyme catabolic process;1.03308161654286e-05!GO:0016887;ATPase activity;1.13680680872997e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.3106925573345e-05!GO:0005770;late endosome;1.3106925573345e-05!GO:0051187;cofactor catabolic process;1.33483004183314e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.35640630554106e-05!GO:0009260;ribonucleotide biosynthetic process;1.5840129010307e-05!GO:0016481;negative regulation of transcription;1.84502749727038e-05!GO:0006613;cotranslational protein targeting to membrane;1.87414893103981e-05!GO:0046034;ATP metabolic process;2.18820866852619e-05!GO:0042254;ribosome biogenesis and assembly;2.58161701361563e-05!GO:0044440;endosomal part;2.6481616756599e-05!GO:0010008;endosome membrane;2.6481616756599e-05!GO:0008361;regulation of cell size;2.74217130170823e-05!GO:0016049;cell growth;2.90039915514497e-05!GO:0030133;transport vesicle;2.97338993781404e-05!GO:0016310;phosphorylation;2.9992361541362e-05!GO:0044453;nuclear membrane part;3.0384431472616e-05!GO:0050789;regulation of biological process;3.08970014145766e-05!GO:0006084;acetyl-CoA metabolic process;3.21286183333378e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.66004062639674e-05!GO:0003713;transcription coactivator activity;3.78620545091044e-05!GO:0016881;acid-amino acid ligase activity;3.87501575341687e-05!GO:0004298;threonine endopeptidase activity;4.47066640598236e-05!GO:0016491;oxidoreductase activity;4.58736761420558e-05!GO:0001666;response to hypoxia;5.45041919504933e-05!GO:0005798;Golgi-associated vesicle;7.27007772070219e-05!GO:0001558;regulation of cell growth;7.4939814817496e-05!GO:0050794;regulation of cellular process;7.64631984559085e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.86134026039473e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.56887207847933e-05!GO:0006754;ATP biosynthetic process;8.82812328202745e-05!GO:0006753;nucleoside phosphate metabolic process;8.82812328202745e-05!GO:0048471;perinuclear region of cytoplasm;9.02782734804807e-05!GO:0001726;ruffle;0.000100639634210962!GO:0006979;response to oxidative stress;0.000100688234831729!GO:0045786;negative regulation of progression through cell cycle;0.000109429297282166!GO:0006091;generation of precursor metabolites and energy;0.00012687952781029!GO:0030532;small nuclear ribonucleoprotein complex;0.00012703659755077!GO:0000245;spliceosome assembly;0.000145531715930036!GO:0045259;proton-transporting ATP synthase complex;0.000147453878236484!GO:0005791;rough endoplasmic reticulum;0.000162849033719148!GO:0016563;transcription activator activity;0.000181246385327985!GO:0005643;nuclear pore;0.000184164732574729!GO:0005912;adherens junction;0.000205720477805845!GO:0051128;regulation of cellular component organization and biogenesis;0.000284740305641641!GO:0042623;ATPase activity, coupled;0.000310761917338782!GO:0006897;endocytosis;0.000337705873031606!GO:0010324;membrane invagination;0.000337705873031606!GO:0048468;cell development;0.000392740470496931!GO:0015980;energy derivation by oxidation of organic compounds;0.000394967370171338!GO:0016197;endosome transport;0.000422692945176819!GO:0051674;localization of cell;0.000430260062115995!GO:0006928;cell motility;0.000430260062115995!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000433623058410165!GO:0004812;aminoacyl-tRNA ligase activity;0.000433623058410165!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000433623058410165!GO:0008026;ATP-dependent helicase activity;0.000448195569430458!GO:0003724;RNA helicase activity;0.000493805548441214!GO:0030867;rough endoplasmic reticulum membrane;0.000498345345753688!GO:0019843;rRNA binding;0.0005276492386803!GO:0033116;ER-Golgi intermediate compartment membrane;0.000539344522268953!GO:0050657;nucleic acid transport;0.000544672384994648!GO:0051236;establishment of RNA localization;0.000544672384994648!GO:0050658;RNA transport;0.000544672384994648!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000544672384994648!GO:0030027;lamellipodium;0.000569557430012388!GO:0007242;intracellular signaling cascade;0.00058561390140051!GO:0045893;positive regulation of transcription, DNA-dependent;0.000586887702912351!GO:0004386;helicase activity;0.000635211011268295!GO:0032446;protein modification by small protein conjugation;0.000668020899713797!GO:0006403;RNA localization;0.000670929042883577!GO:0043021;ribonucleoprotein binding;0.000676273822778341!GO:0043038;amino acid activation;0.000676273822778341!GO:0006418;tRNA aminoacylation for protein translation;0.000676273822778341!GO:0043039;tRNA aminoacylation;0.000676273822778341!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000721508863488741!GO:0016567;protein ubiquitination;0.000793702377398798!GO:0008250;oligosaccharyl transferase complex;0.000820578110025559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000828655118787795!GO:0006259;DNA metabolic process;0.000832634577748458!GO:0005769;early endosome;0.000835134127256516!GO:0007265;Ras protein signal transduction;0.000835134127256516!GO:0009966;regulation of signal transduction;0.000859331074412493!GO:0043065;positive regulation of apoptosis;0.000916661062339259!GO:0006693;prostaglandin metabolic process;0.00092928771683742!GO:0006692;prostanoid metabolic process;0.00092928771683742!GO:0009967;positive regulation of signal transduction;0.000973472451709021!GO:0006612;protein targeting to membrane;0.000990639334727058!GO:0022890;inorganic cation transmembrane transporter activity;0.00100668275958502!GO:0005885;Arp2/3 protein complex;0.0010782393787134!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108351180651189!GO:0045941;positive regulation of transcription;0.00108898302257201!GO:0033673;negative regulation of kinase activity;0.00116664744157787!GO:0006469;negative regulation of protein kinase activity;0.00116664744157787!GO:0043566;structure-specific DNA binding;0.00117104517788749!GO:0065002;intracellular protein transport across a membrane;0.00120386429683866!GO:0007005;mitochondrion organization and biogenesis;0.00126400226370018!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00126493915358749!GO:0045892;negative regulation of transcription, DNA-dependent;0.00137251821526009!GO:0004576;oligosaccharyl transferase activity;0.0013761638744742!GO:0065007;biological regulation;0.00144811443689327!GO:0008154;actin polymerization and/or depolymerization;0.00146423038690298!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00151304484530851!GO:0043068;positive regulation of programmed cell death;0.00155788655527533!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00163623212981015!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00172156981445247!GO:0051920;peroxiredoxin activity;0.00177040073666522!GO:0005741;mitochondrial outer membrane;0.00179007158132134!GO:0007049;cell cycle;0.00180427244459297!GO:0030118;clathrin coat;0.00181203057726743!GO:0008286;insulin receptor signaling pathway;0.00181203057726743!GO:0016072;rRNA metabolic process;0.00193216563126198!GO:0051427;hormone receptor binding;0.00195042077302456!GO:0046930;pore complex;0.00202092362455607!GO:0006752;group transfer coenzyme metabolic process;0.00202859407236185!GO:0005048;signal sequence binding;0.00206038766594813!GO:0031968;organelle outer membrane;0.00214866167721917!GO:0016859;cis-trans isomerase activity;0.00214866167721917!GO:0030658;transport vesicle membrane;0.00236677753304549!GO:0009615;response to virus;0.00240032186408084!GO:0003697;single-stranded DNA binding;0.00260176849659936!GO:0043623;cellular protein complex assembly;0.00269028050789325!GO:0000074;regulation of progression through cell cycle;0.00282695731168005!GO:0019867;outer membrane;0.00285840163269615!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00290306550331785!GO:0051188;cofactor biosynthetic process;0.00292144491743402!GO:0009117;nucleotide metabolic process;0.00300308132791702!GO:0008654;phospholipid biosynthetic process;0.0030071143344679!GO:0051726;regulation of cell cycle;0.00313052162452656!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00320840263546582!GO:0001725;stress fiber;0.00321342818001072!GO:0032432;actin filament bundle;0.00321342818001072!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00331212809700694!GO:0005667;transcription factor complex;0.00332562891261603!GO:0051348;negative regulation of transferase activity;0.00332734136998796!GO:0035257;nuclear hormone receptor binding;0.00349767868040539!GO:0040008;regulation of growth;0.00360234243386239!GO:0008283;cell proliferation;0.00362029630078469!GO:0030031;cell projection biogenesis;0.00368372014231617!GO:0048500;signal recognition particle;0.00375837748158908!GO:0045454;cell redox homeostasis;0.00376399422937038!GO:0008186;RNA-dependent ATPase activity;0.00382020485806691!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00397742641771653!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00397742641771653!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00397742641771653!GO:0000151;ubiquitin ligase complex;0.00407248504559821!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00427373667477678!GO:0033043;regulation of organelle organization and biogenesis;0.00427373667477678!GO:0016853;isomerase activity;0.00453865894487544!GO:0030041;actin filament polymerization;0.00466113223939925!GO:0030127;COPII vesicle coat;0.00466978183814868!GO:0012507;ER to Golgi transport vesicle membrane;0.00466978183814868!GO:0051028;mRNA transport;0.00501303017382362!GO:0051235;maintenance of localization;0.00501303017382362!GO:0043488;regulation of mRNA stability;0.0050300286050274!GO:0043487;regulation of RNA stability;0.0050300286050274!GO:0019838;growth factor binding;0.00505466481033952!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00508908599963973!GO:0006401;RNA catabolic process;0.00511414025575396!GO:0006607;NLS-bearing substrate import into nucleus;0.00517519198474914!GO:0018196;peptidyl-asparagine modification;0.00518481684988896!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00518481684988896!GO:0005905;coated pit;0.00538090568915007!GO:0006364;rRNA processing;0.00543560864860818!GO:0005083;small GTPase regulator activity;0.00552788966023394!GO:0006891;intra-Golgi vesicle-mediated transport;0.0056467311476634!GO:0031072;heat shock protein binding;0.00581141965864651!GO:0006402;mRNA catabolic process;0.00592574221344873!GO:0030134;ER to Golgi transport vesicle;0.00592574221344873!GO:0015992;proton transport;0.00602389472898585!GO:0004860;protein kinase inhibitor activity;0.00661888412081601!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00688123641039622!GO:0005762;mitochondrial large ribosomal subunit;0.00744187526601168!GO:0000315;organellar large ribosomal subunit;0.00744187526601168!GO:0006818;hydrogen transport;0.00744726697403109!GO:0004197;cysteine-type endopeptidase activity;0.00753729452919642!GO:0030832;regulation of actin filament length;0.00757971598490742!GO:0009108;coenzyme biosynthetic process;0.00757971598490742!GO:0001944;vasculature development;0.00759727786341952!GO:0006892;post-Golgi vesicle-mediated transport;0.00759727786341952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00759976931614599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00786210069577731!GO:0045047;protein targeting to ER;0.00786210069577731!GO:0030569;chymotrypsin inhibitor activity;0.00792829569352875!GO:0001516;prostaglandin biosynthetic process;0.00793051358159984!GO:0046457;prostanoid biosynthetic process;0.00793051358159984!GO:0031032;actomyosin structure organization and biogenesis;0.00802946733382703!GO:0003702;RNA polymerase II transcription factor activity;0.00818348081334699!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0082178502646803!GO:0032535;regulation of cellular component size;0.00858448737473581!GO:0030660;Golgi-associated vesicle membrane;0.00861540592789664!GO:0032940;secretion by cell;0.00904574216057301!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00922799970074081!GO:0001568;blood vessel development;0.00937662989436444!GO:0030176;integral to endoplasmic reticulum membrane;0.00947503889992951!GO:0004004;ATP-dependent RNA helicase activity;0.00958258868071328!GO:0017166;vinculin binding;0.00970854335957515!GO:0006323;DNA packaging;0.00979013147795785!GO:0006917;induction of apoptosis;0.00988273208787237!GO:0065009;regulation of a molecular function;0.00997572428543326!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0101565093523425!GO:0017022;myosin binding;0.0101565093523425!GO:0051252;regulation of RNA metabolic process;0.0104283470032493!GO:0008139;nuclear localization sequence binding;0.0112754586454742!GO:0031589;cell-substrate adhesion;0.0113011068582232!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0113116449571398!GO:0051087;chaperone binding;0.0114011181748934!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0115248280706877!GO:0007266;Rho protein signal transduction;0.0117364144586485!GO:0050662;coenzyme binding;0.0118703219616177!GO:0051168;nuclear export;0.0121073015047773!GO:0015630;microtubule cytoskeleton;0.0122447017954243!GO:0051101;regulation of DNA binding;0.0122606944810752!GO:0016126;sterol biosynthetic process;0.0126371868836155!GO:0016568;chromatin modification;0.0128739161663227!GO:0030119;AP-type membrane coat adaptor complex;0.0128796386927757!GO:0044262;cellular carbohydrate metabolic process;0.0130103750581208!GO:0005862;muscle thin filament tropomyosin;0.0133374436080253!GO:0006414;translational elongation;0.0140792137131628!GO:0035258;steroid hormone receptor binding;0.0141361917012485!GO:0030131;clathrin adaptor complex;0.0142951355779474!GO:0012502;induction of programmed cell death;0.0144445855223155!GO:0016363;nuclear matrix;0.0150921719225385!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0153211178423701!GO:0030132;clathrin coat of coated pit;0.0153867800518903!GO:0008312;7S RNA binding;0.0154747970976834!GO:0030663;COPI coated vesicle membrane;0.0156673997567309!GO:0030126;COPI vesicle coat;0.0156673997567309!GO:0045045;secretory pathway;0.0161639921561864!GO:0030100;regulation of endocytosis;0.0167384757603484!GO:0030216;keratinocyte differentiation;0.016936980350629!GO:0006417;regulation of translation;0.0172907530720356!GO:0019904;protein domain specific binding;0.0176068828865348!GO:0030674;protein binding, bridging;0.0176166388685457!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.017700158153814!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0178973867539271!GO:0006399;tRNA metabolic process;0.0187285812465015!GO:0046983;protein dimerization activity;0.0191664417123643!GO:0030695;GTPase regulator activity;0.0195578914337653!GO:0006984;ER-nuclear signaling pathway;0.0196837595894404!GO:0045792;negative regulation of cell size;0.0199376748222758!GO:0007050;cell cycle arrest;0.0199683947555567!GO:0009607;response to biotic stimulus;0.0201001581900491!GO:0003729;mRNA binding;0.0207092758422568!GO:0030308;negative regulation of cell growth;0.0207092758422568!GO:0007160;cell-matrix adhesion;0.0207967913498426!GO:0019210;kinase inhibitor activity;0.0216916341094738!GO:0035035;histone acetyltransferase binding;0.0221195820543408!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0221275801602918!GO:0030055;cell-matrix junction;0.0230790715561587!GO:0048487;beta-tubulin binding;0.0231388435694599!GO:0043681;protein import into mitochondrion;0.0232743141571465!GO:0031902;late endosome membrane;0.0233551148419073!GO:0008383;manganese superoxide dismutase activity;0.0234274639140747!GO:0001315;age-dependent response to reactive oxygen species;0.0234274639140747!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0235682818859469!GO:0001525;angiogenesis;0.0235942054511324!GO:0003690;double-stranded DNA binding;0.023776699524889!GO:0008047;enzyme activator activity;0.0239763430148743!GO:0016070;RNA metabolic process;0.0245064578275844!GO:0046822;regulation of nucleocytoplasmic transport;0.0248865283375374!GO:0016787;hydrolase activity;0.0249249667936012!GO:0005774;vacuolar membrane;0.0249351470194425!GO:0030518;steroid hormone receptor signaling pathway;0.0250892907568105!GO:0012506;vesicle membrane;0.0252243901210899!GO:0008234;cysteine-type peptidase activity;0.025421634262419!GO:0030659;cytoplasmic vesicle membrane;0.0258581260168555!GO:0050811;GABA receptor binding;0.0259924482074151!GO:0005913;cell-cell adherens junction;0.0259924482074151!GO:0030137;COPI-coated vesicle;0.0259924482074151!GO:0006509;membrane protein ectodomain proteolysis;0.0259924482074151!GO:0033619;membrane protein proteolysis;0.0259924482074151!GO:0018193;peptidyl-amino acid modification;0.0263588424785412!GO:0005924;cell-substrate adherens junction;0.0265421562837755!GO:0051287;NAD binding;0.0269290972868187!GO:0043205;fibril;0.0270345477168565!GO:0051049;regulation of transport;0.0280009943279977!GO:0008629;induction of apoptosis by intracellular signals;0.0284150100133362!GO:0005938;cell cortex;0.0284263986997157!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0287840604748087!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0287840604748087!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0287840604748087!GO:0000059;protein import into nucleus, docking;0.0288404369180941!GO:0048306;calcium-dependent protein binding;0.0290371511336138!GO:0009893;positive regulation of metabolic process;0.0291460714891123!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0291460714891123!GO:0015399;primary active transmembrane transporter activity;0.0291460714891123!GO:0043022;ribosome binding;0.0292787484135917!GO:0051270;regulation of cell motility;0.0293023019444866!GO:0030198;extracellular matrix organization and biogenesis;0.0295977448664436!GO:0030286;dynein complex;0.0297492179988136!GO:0045121;lipid raft;0.0297691143411333!GO:0004721;phosphoprotein phosphatase activity;0.0299841745839922!GO:0000302;response to reactive oxygen species;0.0300537511437748!GO:0030139;endocytic vesicle;0.0306987223018729!GO:0031529;ruffle organization and biogenesis;0.0308972718896862!GO:0016584;nucleosome positioning;0.030899566207105!GO:0048154;S100 beta binding;0.030902840932957!GO:0030521;androgen receptor signaling pathway;0.0310973285700339!GO:0031901;early endosome membrane;0.031982518202104!GO:0009100;glycoprotein metabolic process;0.0325392267046143!GO:0000314;organellar small ribosomal subunit;0.0325987319124892!GO:0005763;mitochondrial small ribosomal subunit;0.0325987319124892!GO:0016791;phosphoric monoester hydrolase activity;0.0328196153643562!GO:0022415;viral reproductive process;0.0332090037953986!GO:0045947;negative regulation of translational initiation;0.0334594232611628!GO:0005832;chaperonin-containing T-complex;0.0334854250600636!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0334907944772918!GO:0005159;insulin-like growth factor receptor binding;0.0334907944772918!GO:0005869;dynactin complex;0.0349567154088774!GO:0008307;structural constituent of muscle;0.0361388737867319!GO:0005925;focal adhesion;0.0362472367535284!GO:0030162;regulation of proteolysis;0.0362472367535284!GO:0003746;translation elongation factor activity;0.0365764391343741!GO:0030125;clathrin vesicle coat;0.0370226398190183!GO:0030665;clathrin coated vesicle membrane;0.0370226398190183!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0374156614572309!GO:0048514;blood vessel morphogenesis;0.0374265220135505!GO:0048660;regulation of smooth muscle cell proliferation;0.0375534757146877!GO:0005100;Rho GTPase activator activity;0.0381786846485938!GO:0051098;regulation of binding;0.0381909949727049!GO:0006118;electron transport;0.0382489852890342!GO:0043086;negative regulation of catalytic activity;0.0384423541285507!GO:0006650;glycerophospholipid metabolic process;0.0389494166682181!GO:0017091;AU-rich element binding;0.0396723428319151!GO:0050779;RNA destabilization;0.0396723428319151!GO:0000289;poly(A) tail shortening;0.0396723428319151!GO:0030833;regulation of actin filament polymerization;0.0396723428319151!GO:0006516;glycoprotein catabolic process;0.0396723428319151!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0399062229394087!GO:0006376;mRNA splice site selection;0.0412380330074766!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0412380330074766!GO:0007015;actin filament organization;0.0415134831209509!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0432628585558407!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0432715312125388!GO:0015002;heme-copper terminal oxidase activity;0.0432715312125388!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0432715312125388!GO:0004129;cytochrome-c oxidase activity;0.0432715312125388!GO:0000902;cell morphogenesis;0.0443342601436203!GO:0032989;cellular structure morphogenesis;0.0443342601436203!GO:0060090;molecular adaptor activity;0.0452422965974198!GO:0008637;apoptotic mitochondrial changes;0.0455870330748904!GO:0008147;structural constituent of bone;0.0456069227950895!GO:0008610;lipid biosynthetic process;0.0457262523329184!GO:0000303;response to superoxide;0.0465522501983536!GO:0030433;ER-associated protein catabolic process;0.0470563307655562!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0470563307655562!GO:0044433;cytoplasmic vesicle part;0.0472798431656396!GO:0051262;protein tetramerization;0.0473245498975659!GO:0009266;response to temperature stimulus;0.0473694478448113!GO:0001533;cornified envelope;0.0484465733911732!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0485531453148789!GO:0006611;protein export from nucleus;0.0487653628709503!GO:0046467;membrane lipid biosynthetic process;0.0487654682011233!GO:0051259;protein oligomerization;0.0493383262398962!GO:0051059;NF-kappaB binding;0.0493828353681258!GO:0043034;costamere;0.04961396741479 | |||
|sample_id=10029 | |sample_id=10029 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=trachea | |sample_tissue=trachea | ||
|top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123 | |top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10029-101E2;search_select_hide=table117:FF:10029-101E2 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | trachea, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10635 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10635
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10635
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.156 |
| 10 | 10 | 0.00786 |
| 100 | 100 | 0.199 |
| 101 | 101 | 0.91 |
| 102 | 102 | 0.89 |
| 103 | 103 | 0.687 |
| 104 | 104 | 0.74 |
| 105 | 105 | 0.476 |
| 106 | 106 | 0.541 |
| 107 | 107 | 0.12 |
| 108 | 108 | 0.985 |
| 109 | 109 | 0.756 |
| 11 | 11 | 0.342 |
| 110 | 110 | 0.364 |
| 111 | 111 | 0.0647 |
| 112 | 112 | 0.399 |
| 113 | 113 | 0.621 |
| 114 | 114 | 0.139 |
| 115 | 115 | 0.568 |
| 116 | 116 | 0.205 |
| 117 | 117 | 0.0869 |
| 118 | 118 | 0.0892 |
| 119 | 119 | 0.374 |
| 12 | 12 | 0.908 |
| 120 | 120 | 0.328 |
| 121 | 121 | 0.35 |
| 122 | 122 | 0.421 |
| 123 | 123 | 0.00333 |
| 124 | 124 | 0.479 |
| 125 | 125 | 0.454 |
| 126 | 126 | 0.126 |
| 127 | 127 | 0.674 |
| 128 | 128 | 0.446 |
| 129 | 129 | 0.347 |
| 13 | 13 | 0.3 |
| 130 | 130 | 0.611 |
| 131 | 131 | 0.513 |
| 132 | 132 | 0.164 |
| 133 | 133 | 0.00898 |
| 134 | 134 | 0.0074 |
| 135 | 135 | 0.0408 |
| 136 | 136 | 0.813 |
| 137 | 137 | 0.787 |
| 138 | 138 | 0.622 |
| 139 | 139 | 0.47 |
| 14 | 14 | 0.847 |
| 140 | 140 | 0.207 |
| 141 | 141 | 0.449 |
| 142 | 142 | 0.994 |
| 143 | 143 | 0.114 |
| 144 | 144 | 0.145 |
| 145 | 145 | 0.63 |
| 146 | 146 | 0.0955 |
| 147 | 147 | 0.452 |
| 148 | 148 | 0.496 |
| 149 | 149 | 0.748 |
| 15 | 15 | 0.228 |
| 150 | 150 | 0.945 |
| 151 | 151 | 0.668 |
| 152 | 152 | 0.037 |
| 153 | 153 | 0.509 |
| 154 | 154 | 0.485 |
| 155 | 155 | 0.739 |
| 156 | 156 | 0.513 |
| 157 | 157 | 0.619 |
| 158 | 158 | 0.15 |
| 159 | 159 | 0.731 |
| 16 | 16 | 0.792 |
| 160 | 160 | 0.43 |
| 161 | 161 | 0.195 |
| 162 | 162 | 0.964 |
| 163 | 163 | 0.602 |
| 164 | 164 | 0.0451 |
| 165 | 165 | 0.27 |
| 166 | 166 | 0.922 |
| 167 | 167 | 0.023 |
| 168 | 168 | 0.0284 |
| 169 | 169 | 0.339 |
| 17 | 17 | 0.903 |
| 18 | 18 | 0.049 |
| 19 | 19 | 0.698 |
| 2 | 2 | 0.0195 |
| 20 | 20 | 0.147 |
| 21 | 21 | 0.234 |
| 22 | 22 | 0.402 |
| 23 | 23 | 0.302 |
| 24 | 24 | 0.568 |
| 25 | 25 | 0.777 |
| 26 | 26 | 0.325 |
| 27 | 27 | 0.557 |
| 28 | 28 | 0.959 |
| 29 | 29 | 0.0692 |
| 3 | 3 | 0.394 |
| 30 | 30 | 0.00597 |
| 31 | 31 | 0.968 |
| 32 | 32 | 0.975 |
| 33 | 33 | 0.813 |
| 34 | 34 | 0.406 |
| 35 | 35 | 0.133 |
| 36 | 36 | 0.0283 |
| 37 | 37 | 0.504 |
| 38 | 38 | 0.944 |
| 39 | 39 | 0.322 |
| 4 | 4 | 0.287 |
| 40 | 40 | 0.324 |
| 41 | 41 | 0.253 |
| 42 | 42 | 0.579 |
| 43 | 43 | 0.366 |
| 44 | 44 | 0.941 |
| 45 | 45 | 0.0503 |
| 46 | 46 | 0.326 |
| 47 | 47 | 0.259 |
| 48 | 48 | 0.498 |
| 49 | 49 | 0.0652 |
| 5 | 5 | 0.722 |
| 50 | 50 | 0.273 |
| 51 | 51 | 0.528 |
| 52 | 52 | 0.103 |
| 53 | 53 | 0.942 |
| 54 | 54 | 0.986 |
| 55 | 55 | 0.874 |
| 56 | 56 | 0.929 |
| 57 | 57 | 0.101 |
| 58 | 58 | 0.868 |
| 59 | 59 | 0.279 |
| 6 | 6 | 0.328 |
| 60 | 60 | 0.344 |
| 61 | 61 | 0.674 |
| 62 | 62 | 0.631 |
| 63 | 63 | 0.621 |
| 64 | 64 | 0.511 |
| 65 | 65 | 0.896 |
| 66 | 66 | 0.0505 |
| 67 | 67 | 0.393 |
| 68 | 68 | 0.672 |
| 69 | 69 | 0.827 |
| 7 | 7 | 0.976 |
| 70 | 70 | 0.281 |
| 71 | 71 | 0.0681 |
| 72 | 72 | 0.484 |
| 73 | 73 | 0.732 |
| 74 | 74 | 0.324 |
| 75 | 75 | 0.0209 |
| 76 | 76 | 0.0103 |
| 77 | 77 | 0.012 |
| 78 | 78 | 0.0132 |
| 79 | 79 | 0.141 |
| 8 | 8 | 0.687 |
| 80 | 80 | 0.0221 |
| 81 | 81 | 0.217 |
| 82 | 82 | 0.723 |
| 83 | 83 | 0.345 |
| 84 | 84 | 0.839 |
| 85 | 85 | 0.702 |
| 86 | 86 | 0.959 |
| 87 | 87 | 0.618 |
| 88 | 88 | 0.977 |
| 89 | 89 | 0.365 |
| 9 | 9 | 0.233 |
| 90 | 90 | 0.0241 |
| 91 | 91 | 0.439 |
| 92 | 92 | 0.685 |
| 93 | 93 | 0.144 |
| 94 | 94 | 0.0309 |
| 95 | 95 | 0.508 |
| 96 | 96 | 0.636 |
| 97 | 97 | 0.835 |
| 98 | 98 | 0.149 |
| 99 | 99 | 0.31 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10635
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010029 human trachea - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010029 (human trachea - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
