FF:10413-106B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005418 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582;DRZ011547;DRZ012932 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100255 | |fonse_cell_line=FF:0100255 | ||
|fonse_cell_line_closure=FF:0100255 | |fonse_cell_line_closure=FF:0100255 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10413-106B8 | |id=FF:10413-106B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100711 | ||
|is_obsolete= | |||
|library_id=CNhs10731 | |||
|library_id_phase_based=2:CNhs10731 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10413 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10413 | |||
|name=glioma cell line:GI-1 | |name=glioma cell line:GI-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10731,LSID691,release008,COMPLETED | |profile_hcage=CNhs10731,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.055118134803774,0,0,0.0377617708084919,0,-0.167125862585966,-0.227285425773168,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0430867407408792,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.110236269607548,0,-0.134334622602822,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.388234978761658,0,0,0.110236269607548,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.110236269607548,0,0,0,0,0,0,0,0,0,0,0,0.110236269607548,0.041054363729972,0,0,0.00379783735656047,0,0,0,-0.0663303367679622,0.00717830483777595,0,0,0.055118134803774,0.110236269607548,0.173074484571552,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.110236269607548,0,0,-0.169343477497442,-0.513175885577341,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.110236269607548,0,0.173074484571552,0.110236269607548,0.110236269607548,0,0,0,0,0,0.110236269607548,0,0,0,0.27285961752839,0.0991659310632095,0.146929665381491,-0.143515142523472,0,0,-0.260474615439541,0,0,0,0,0,0,0.271109835809258,0,0,-0.128119866952565,0,0.0598237180182335,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0387031432448807,-0.0683442610773682,0,0,0,0,-0.0761231799534955,0,-0.0106432141861922,-0.0827201683234173,0.815804472262031,-0.0903843037556466,0.0545237728263664,0,0,0,-0.497893365046614,-0.118842153853143,0,0,-0.121779851751874,-0.181349618560659,0,0,0.898830486455667,0,0.043192797007094,-0.0528733905807535,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.153399858694191,0,0,0.110236269607548,0.038326341667691,-0.0316005587403297,0,3.19225931975919e-05,0.58530718171611,-0.0101521230306183,0.0590816625658286,0.248104932283801,0,-0.302389727009913,-0.126003392490841,-0.124525495312936,-0.085603830178454,-0.0371655797635901,0.0080980813450307,-0.0458967294814562,-0.152855299479551,0.128798049104864,0.159188421905907,-0.0571996929170164,0.0231716639997817,0.227067022197698,-0.45773665750456,0.110236269607548,0,0.142325107186832,-0.208774300613096,0,0,-0.156505771536714,-0.0300018274616702,-0.017415503436299,-0.1486268079336,0.0511766375825865,-0.195679147936086,0.764138779656273,-0.123827509956535,-0.0286030509119975,0.76740289125191,0,0,0.00901595030515079,0.00464323082777038,-0.0830244011670241,0.0342293548538026,0,-0.00358900643782079,-0.0683442610773682,0.055118134803774,0.233659203835952,-0.123030508617201,0,0,-0.142025815804123,0,0,0,0,0.110236269607548,-0.036472469235697,-0.539492143030166,-0.0347757606606668,0,0.00510105874532885,0,-0.242167945548812,0,0.166627432601059,0.00713941878489377,0.0355347905787677,-0.0941866576942743,0,0.0583749868603199,-0.425552033138855,0.168618246601057,0.0143566096755519,0.212663008997433,0.100694455970123,-0.118486217252507,0.0912996854968757,-0.232570378165893,0.198079800894878,-0.0881268324752877,0,0.351509577827657,-0.0294426035890426,0.0190078285715322,0.0581918822321057,0,0.0258607739797529,0,0.122281497982836,0,0.00346041356433224,0.136840753790235,0.31069488468153,-0.353306355015062,0,-0.117515591793035,0.197228958714513,0,-0.0743045722771024,0,0.271109835809258,-0.0401308137270909,0.0522882927496338,-0.211650427864589,0.0956053616728734,0,0.154484722235164,0,0,0.121267519273567,-0.12523976815684,0,0.0720465775472145,-0.275593971273336,-0.333106205386037,0.082108727459944,0,0,-0.374590502183467,0,0,-0.27231912087797,0.110236269607548,-0.0298888894608142,0.183425073580534,-0.0225860093445807,-0.108622809454255,0,0,-0.0672914963576273,0,0.653015576213405,0,0,0.0212285392104343,0,0,0,0.198079800894878,-0.00114820117693543,0,0,0,0,0,0,0,-0.175936698299979,0.0334016485452097,0,0.418023429538576,0,0.198079800894878,0,1.1371586334644,0,0,0,0.198079800894878,0.445364601831075,0.00422579569072634,0.21059152726364,0,0,0,0,0.172511576208183,0.0678732737145342,0.110236269607548,-0.131862706497632,0.110236269607548,0,0,0,0.111938811105667,0,0,0,0.055118134803774,-0.057730457053664,-0.193411385171492,0,0,0,-0.27695440160179,0,0,0,0,-0.346931528372415,0,0,0.167078235181266,0,-0.00780043874474923,-0.0815818795468414,0,-0.0396874781617745,0.104646128816214,-0.191159687895082,0,0,-0.151110862182339,0,0,0.184250926702292,0,0,0.103957382052995,0,0,0,0,0.083580249466505,0.110236269607548,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.396468872226954,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.156621271447714,0,0,0,0,0,0.110236269607548,0,0,0.278558319598974,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.167125862585966,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0130828164278993,-0.561009321725768,0,0,0,0,0,0,0,-0.0767534973112124,0,0.110236269607548,0,0,-0.00364810410142878,0.110236269607548,0,0,0.331955030278133,0,0.0377617708084919,0,0,0,0,0,0.110236269607548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266588691280743,0,0.218340380898817,-0.0568589461625992,0,0,0.0455563906791251,0,0,0,0,0,0,0.067699476418912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110236269607548,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0.110236269607548,0,0,-0.0979578962680575,0,0,0.142562008551542,0,0,0,0,0,0,0.00733552183364474,0.454096543587194,0.0998758248445212,0,0,0,-0.054385572482455,0.388234978761658,0,0,0.110236269607548,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0430867407408792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198079800894878,0,0,0,0,0,0,0,-0.0340113632754165,0.110236269607548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0150064287621657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.207349066055517,0,0,0,0,0,0,0,0,0.110236269607548,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.352424241620834,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.198079800894878,0,0,0,0,0,0,0,0,0,0,-0.25361060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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=30.63625 | |rna_weight_ug=30.63625 | ||
|sample_age=61 | |sample_age=61 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0763 | |sample_cell_catalog=RCB0763 | ||
|sample_cell_line=GI-1 | |sample_cell_line=GI-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.79012397123423e-268!GO:0043226;organelle;7.68591249828773e-225!GO:0043229;intracellular organelle;2.59445178760524e-224!GO:0043231;intracellular membrane-bound organelle;1.50298720925989e-222!GO:0043227;membrane-bound organelle;3.66410761189285e-222!GO:0005737;cytoplasm;1.21246132595492e-177!GO:0044422;organelle part;7.62966165081483e-149!GO:0044446;intracellular organelle part;3.15098625407877e-147!GO:0044444;cytoplasmic part;2.16963773975197e-123!GO:0005634;nucleus;5.37780221583568e-104!GO:0044238;primary metabolic process;9.62780209465725e-104!GO:0044237;cellular metabolic process;2.41600054723585e-103!GO:0043170;macromolecule metabolic process;7.55508384390624e-98!GO:0032991;macromolecular complex;3.69388687895809e-96!GO:0044428;nuclear part;8.2259517666724e-85!GO:0030529;ribonucleoprotein complex;1.93478178446223e-82!GO:0043233;organelle lumen;3.2054045491294e-80!GO:0031974;membrane-enclosed lumen;3.2054045491294e-80!GO:0005515;protein binding;3.24961795410599e-77!GO:0003723;RNA binding;3.95410643903928e-77!GO:0043283;biopolymer metabolic process;1.01761524454508e-65!GO:0010467;gene expression;1.47133608981748e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.25504946102125e-56!GO:0005739;mitochondrion;5.40708629679947e-54!GO:0006396;RNA processing;6.15558516840186e-54!GO:0031981;nuclear lumen;4.00034597441015e-53!GO:0016043;cellular component organization and biogenesis;1.61527483524498e-50!GO:0043234;protein complex;6.51650571739844e-49!GO:0031090;organelle membrane;1.53769759493973e-48!GO:0005840;ribosome;1.02306391414516e-46!GO:0019538;protein metabolic process;1.42195697907805e-46!GO:0033036;macromolecule localization;9.71543793072142e-46!GO:0015031;protein transport;2.37652443028503e-45!GO:0006412;translation;2.3247954365775e-43!GO:0016071;mRNA metabolic process;3.54363712339088e-43!GO:0044260;cellular macromolecule metabolic process;1.30964554605567e-42!GO:0044267;cellular protein metabolic process;9.99710966233204e-42!GO:0008104;protein localization;1.08784938304322e-41!GO:0045184;establishment of protein localization;4.3900700622903e-41!GO:0003735;structural constituent of ribosome;2.85795416861008e-40!GO:0008380;RNA splicing;1.81973435288876e-39!GO:0046907;intracellular transport;4.59385911212748e-39!GO:0003676;nucleic acid binding;7.75948463611515e-39!GO:0006397;mRNA processing;6.42264574736227e-37!GO:0009058;biosynthetic process;4.20086261367541e-36!GO:0033279;ribosomal subunit;7.10240716712842e-36!GO:0044429;mitochondrial part;8.63156176214176e-36!GO:0031967;organelle envelope;1.62840773018107e-35!GO:0043228;non-membrane-bound organelle;2.3908487830691e-35!GO:0043232;intracellular non-membrane-bound organelle;2.3908487830691e-35!GO:0031975;envelope;3.53533462220087e-35!GO:0005654;nucleoplasm;4.31046736441842e-34!GO:0016070;RNA metabolic process;1.01004327304944e-33!GO:0009059;macromolecule biosynthetic process;1.79962056495108e-33!GO:0044249;cellular biosynthetic process;4.13389965116817e-33!GO:0006996;organelle organization and biogenesis;6.3033759543836e-33!GO:0005829;cytosol;1.36439150646045e-32!GO:0006886;intracellular protein transport;2.0245787126469e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.80071604728634e-30!GO:0006259;DNA metabolic process;9.2229862489236e-30!GO:0000166;nucleotide binding;7.62080624984032e-29!GO:0044451;nucleoplasm part;1.19878284617691e-27!GO:0005681;spliceosome;2.66179366187843e-27!GO:0007049;cell cycle;7.10074426145896e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.8184172721259e-27!GO:0051649;establishment of cellular localization;1.64664609372531e-26!GO:0065003;macromolecular complex assembly;1.90117468467054e-26!GO:0051641;cellular localization;5.22256147211179e-26!GO:0022607;cellular component assembly;1.83469957253788e-23!GO:0016462;pyrophosphatase activity;1.43419270491228e-22!GO:0008134;transcription factor binding;2.59443483708178e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.90694208027913e-22!GO:0012505;endomembrane system;2.91839386620369e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.76146675066856e-22!GO:0017111;nucleoside-triphosphatase activity;4.05334449343427e-22!GO:0005783;endoplasmic reticulum;6.33686980423218e-22!GO:0005740;mitochondrial envelope;6.75881360310852e-22!GO:0006457;protein folding;9.13731975022155e-22!GO:0044445;cytosolic part;1.06515942148843e-21!GO:0016874;ligase activity;1.42900029812173e-20!GO:0031966;mitochondrial membrane;1.47794321143147e-20!GO:0032553;ribonucleotide binding;2.04570193470579e-20!GO:0032555;purine ribonucleotide binding;2.04570193470579e-20!GO:0019866;organelle inner membrane;2.34072412799197e-20!GO:0005730;nucleolus;7.12559041330624e-20!GO:0015935;small ribosomal subunit;1.38903782775804e-19!GO:0006119;oxidative phosphorylation;1.89000192816102e-19!GO:0017076;purine nucleotide binding;1.89000192816102e-19!GO:0006512;ubiquitin cycle;3.46872474287067e-19!GO:0022402;cell cycle process;7.46668072960382e-19!GO:0048770;pigment granule;9.59205274826102e-19!GO:0042470;melanosome;9.59205274826102e-19!GO:0022618;protein-RNA complex assembly;1.18607903529732e-18!GO:0005743;mitochondrial inner membrane;2.10873351053365e-18!GO:0006974;response to DNA damage stimulus;4.15243665583687e-18!GO:0044432;endoplasmic reticulum part;5.56017779088211e-18!GO:0015934;large ribosomal subunit;1.91950831161798e-17!GO:0043285;biopolymer catabolic process;2.81578797005814e-17!GO:0005524;ATP binding;2.93143577414375e-17!GO:0000278;mitotic cell cycle;3.94415905749547e-17!GO:0044265;cellular macromolecule catabolic process;9.8191369903128e-17!GO:0031980;mitochondrial lumen;1.12753398377362e-16!GO:0005759;mitochondrial matrix;1.12753398377362e-16!GO:0032559;adenyl ribonucleotide binding;1.16796782509043e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.53720303273275e-16!GO:0044455;mitochondrial membrane part;2.95195499690624e-16!GO:0019941;modification-dependent protein catabolic process;4.62794486215269e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.62794486215269e-16!GO:0044257;cellular protein catabolic process;6.3749011275012e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.37776769431957e-16!GO:0006281;DNA repair;1.05207183816382e-15!GO:0006605;protein targeting;1.36794089621605e-15!GO:0030554;adenyl nucleotide binding;1.50210739137621e-15!GO:0008135;translation factor activity, nucleic acid binding;1.82642236017247e-15!GO:0009057;macromolecule catabolic process;1.88276236603544e-15!GO:0030163;protein catabolic process;3.1335602774639e-15!GO:0043412;biopolymer modification;4.23607996814456e-15!GO:0031965;nuclear membrane;5.27336009490983e-15!GO:0048193;Golgi vesicle transport;5.78869719943477e-15!GO:0006366;transcription from RNA polymerase II promoter;6.28477440608437e-15!GO:0016192;vesicle-mediated transport;9.81438714024205e-15!GO:0005635;nuclear envelope;1.05450970586572e-14!GO:0003712;transcription cofactor activity;1.10908153916714e-14!GO:0051082;unfolded protein binding;1.27103389883417e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.54605151346061e-14!GO:0005794;Golgi apparatus;4.18492420355731e-14!GO:0005694;chromosome;7.4445644581194e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.29480814962961e-14!GO:0000375;RNA splicing, via transesterification reactions;8.29480814962961e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.29480814962961e-14!GO:0000087;M phase of mitotic cell cycle;1.06190897077497e-13!GO:0007067;mitosis;1.68751977221524e-13!GO:0051186;cofactor metabolic process;1.71964156484494e-13!GO:0006260;DNA replication;1.92174954043791e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.20744273589215e-13!GO:0044453;nuclear membrane part;3.04245304437697e-13!GO:0006464;protein modification process;3.07653480408592e-13!GO:0044248;cellular catabolic process;3.89584088730908e-13!GO:0051276;chromosome organization and biogenesis;4.02861430582197e-13!GO:0005746;mitochondrial respiratory chain;4.65320804507977e-13!GO:0016887;ATPase activity;5.62428925912051e-13!GO:0005761;mitochondrial ribosome;6.36763307292583e-13!GO:0000313;organellar ribosome;6.36763307292583e-13!GO:0005789;endoplasmic reticulum membrane;6.48103891755526e-13!GO:0022403;cell cycle phase;9.82115807818046e-13!GO:0042254;ribosome biogenesis and assembly;1.03889099036004e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.22091961889182e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.24857922989106e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.34203291716831e-12!GO:0051301;cell division;1.51971747983998e-12!GO:0050794;regulation of cellular process;1.88367988463024e-12!GO:0003743;translation initiation factor activity;1.90397746612111e-12!GO:0004386;helicase activity;2.40696245537398e-12!GO:0042623;ATPase activity, coupled;2.9633460789427e-12!GO:0006913;nucleocytoplasmic transport;4.48223058627191e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.54680062489645e-12!GO:0003954;NADH dehydrogenase activity;4.54680062489645e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.54680062489645e-12!GO:0016604;nuclear body;8.89552628690125e-12!GO:0009719;response to endogenous stimulus;8.98797021666861e-12!GO:0005793;ER-Golgi intermediate compartment;1.20981732627786e-11!GO:0044427;chromosomal part;1.52384094405162e-11!GO:0006413;translational initiation;1.593004839617e-11!GO:0051169;nuclear transport;1.60502536861304e-11!GO:0043687;post-translational protein modification;3.11278578283817e-11!GO:0008565;protein transporter activity;3.91370791057613e-11!GO:0015630;microtubule cytoskeleton;5.15955681427016e-11!GO:0005643;nuclear pore;5.52805406572735e-11!GO:0006732;coenzyme metabolic process;6.30830880607777e-11!GO:0019222;regulation of metabolic process;1.07957814430751e-10!GO:0051726;regulation of cell cycle;1.15352993560676e-10!GO:0006446;regulation of translational initiation;1.19343378133139e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.31895307427526e-10!GO:0042773;ATP synthesis coupled electron transport;1.31895307427526e-10!GO:0000074;regulation of progression through cell cycle;1.74856983881352e-10!GO:0000279;M phase;2.21375947704658e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.4136341960069e-10!GO:0008026;ATP-dependent helicase activity;2.46466142101856e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.57124302429118e-10!GO:0045271;respiratory chain complex I;3.57124302429118e-10!GO:0005747;mitochondrial respiratory chain complex I;3.57124302429118e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.09952708718166e-10!GO:0006399;tRNA metabolic process;6.16481828047595e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.48000492244248e-10!GO:0016607;nuclear speck;6.48000492244248e-10!GO:0050657;nucleic acid transport;7.78845253186427e-10!GO:0051236;establishment of RNA localization;7.78845253186427e-10!GO:0050658;RNA transport;7.78845253186427e-10!GO:0019787;small conjugating protein ligase activity;7.99521766134881e-10!GO:0006403;RNA localization;1.00724010747774e-09!GO:0008639;small protein conjugating enzyme activity;1.02260242614668e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.07496829291541e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.30390875861903e-09!GO:0006323;DNA packaging;1.53726131449426e-09!GO:0004842;ubiquitin-protein ligase activity;1.5405305146151e-09!GO:0016568;chromatin modification;1.81246282147664e-09!GO:0016881;acid-amino acid ligase activity;2.14793420653126e-09!GO:0006163;purine nucleotide metabolic process;2.33174646569157e-09!GO:0065002;intracellular protein transport across a membrane;2.5087584462063e-09!GO:0009259;ribonucleotide metabolic process;3.08574696124716e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.51013618453942e-09!GO:0046930;pore complex;4.7126915384989e-09!GO:0009150;purine ribonucleotide metabolic process;5.21739160634838e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.25628528406138e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.25628528406138e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.25628528406138e-09!GO:0012501;programmed cell death;7.06493674352847e-09!GO:0006164;purine nucleotide biosynthetic process;7.99073474137523e-09!GO:0050789;regulation of biological process;1.08252094410945e-08!GO:0017038;protein import;1.11942813338475e-08!GO:0006350;transcription;1.1266779488778e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.15762998112218e-08!GO:0043566;structure-specific DNA binding;1.22903828535786e-08!GO:0006915;apoptosis;1.2596470296611e-08!GO:0043038;amino acid activation;1.49939699093812e-08!GO:0006418;tRNA aminoacylation for protein translation;1.49939699093812e-08!GO:0043039;tRNA aminoacylation;1.49939699093812e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.70769531687924e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.63205327524464e-08!GO:0031323;regulation of cellular metabolic process;2.77027339888675e-08!GO:0005667;transcription factor complex;2.87335231468481e-08!GO:0015986;ATP synthesis coupled proton transport;2.91862659362561e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.91862659362561e-08!GO:0009056;catabolic process;2.95659639705412e-08!GO:0009260;ribonucleotide biosynthetic process;3.29054334658883e-08!GO:0006364;rRNA processing;3.78908153044834e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.86241315371076e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.86241315371076e-08!GO:0009141;nucleoside triphosphate metabolic process;4.23019217607884e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.25975905423956e-08!GO:0009055;electron carrier activity;4.76983901106877e-08!GO:0016072;rRNA metabolic process;5.10358404963196e-08!GO:0051028;mRNA transport;5.80830753351693e-08!GO:0008219;cell death;5.82416518673164e-08!GO:0016265;death;5.82416518673164e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.56195030999342e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.78887083790691e-08!GO:0046034;ATP metabolic process;8.65714514105962e-08!GO:0048523;negative regulation of cellular process;9.36792496380201e-08!GO:0003924;GTPase activity;9.64101756709421e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.66327800168138e-08!GO:0005768;endosome;1.004472915633e-07!GO:0019829;cation-transporting ATPase activity;1.04981742676089e-07!GO:0006461;protein complex assembly;1.09103377172581e-07!GO:0009060;aerobic respiration;1.1307842876974e-07!GO:0045333;cellular respiration;1.21649448126625e-07!GO:0016563;transcription activator activity;1.23178699245716e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.24990592865462e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.3167561491229e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.3167561491229e-07!GO:0003713;transcription coactivator activity;1.41424841698176e-07!GO:0003697;single-stranded DNA binding;1.83096618499496e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.97575917418939e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.97575917418939e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.0254109172709e-07!GO:0003714;transcription corepressor activity;2.75505589849298e-07!GO:0016564;transcription repressor activity;2.89878941083029e-07!GO:0048475;coated membrane;3.012146032021e-07!GO:0030117;membrane coat;3.012146032021e-07!GO:0006754;ATP biosynthetic process;3.6684696589638e-07!GO:0006753;nucleoside phosphate metabolic process;3.6684696589638e-07!GO:0031324;negative regulation of cellular metabolic process;3.78984139799798e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.84353222855024e-07!GO:0051188;cofactor biosynthetic process;3.84353222855024e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.88736920076491e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.42586966449182e-07!GO:0005788;endoplasmic reticulum lumen;6.51847203701349e-07!GO:0032774;RNA biosynthetic process;6.80603318638369e-07!GO:0000245;spliceosome assembly;7.62020968625136e-07!GO:0006351;transcription, DNA-dependent;9.14976047838176e-07!GO:0005813;centrosome;1.09479425541419e-06!GO:0010468;regulation of gene expression;1.10131115507602e-06!GO:0006099;tricarboxylic acid cycle;1.16067888642672e-06!GO:0046356;acetyl-CoA catabolic process;1.16067888642672e-06!GO:0030120;vesicle coat;1.23539462429485e-06!GO:0030662;coated vesicle membrane;1.23539462429485e-06!GO:0051170;nuclear import;1.93158636497582e-06!GO:0005815;microtubule organizing center;1.94540776964948e-06!GO:0006606;protein import into nucleus;1.99588641440159e-06!GO:0007005;mitochondrion organization and biogenesis;2.02650780901823e-06!GO:0006261;DNA-dependent DNA replication;2.14552483273781e-06!GO:0016779;nucleotidyltransferase activity;2.14552483273781e-06!GO:0051187;cofactor catabolic process;2.408860156771e-06!GO:0009117;nucleotide metabolic process;2.45473889066175e-06!GO:0044431;Golgi apparatus part;2.55494349491622e-06!GO:0005819;spindle;2.5950684872561e-06!GO:0005770;late endosome;2.92487700861572e-06!GO:0051789;response to protein stimulus;3.12332772105703e-06!GO:0006986;response to unfolded protein;3.12332772105703e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.23532565524803e-06!GO:0009109;coenzyme catabolic process;3.37449242874721e-06!GO:0048519;negative regulation of biological process;3.58522007543759e-06!GO:0006084;acetyl-CoA metabolic process;3.75207175139117e-06!GO:0031982;vesicle;3.81799714178169e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.89563388053346e-06!GO:0044440;endosomal part;3.94151645746967e-06!GO:0010008;endosome membrane;3.94151645746967e-06!GO:0008654;phospholipid biosynthetic process;4.02345181515811e-06!GO:0005773;vacuole;4.02838272646026e-06!GO:0031988;membrane-bound vesicle;4.31058979243941e-06!GO:0032446;protein modification by small protein conjugation;4.56073680221693e-06!GO:0006752;group transfer coenzyme metabolic process;4.81820991889779e-06!GO:0009892;negative regulation of metabolic process;4.84822524779746e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.89282043702335e-06!GO:0006613;cotranslational protein targeting to membrane;5.21382638661973e-06!GO:0045786;negative regulation of progression through cell cycle;5.24622793031476e-06!GO:0031410;cytoplasmic vesicle;5.60662544838301e-06!GO:0005525;GTP binding;5.61853187345516e-06!GO:0016859;cis-trans isomerase activity;5.66299533463103e-06!GO:0016740;transferase activity;5.70247644192548e-06!GO:0045259;proton-transporting ATP synthase complex;5.89951333609132e-06!GO:0016853;isomerase activity;6.07300735328128e-06!GO:0043067;regulation of programmed cell death;6.07300735328128e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.59068881816265e-06!GO:0051427;hormone receptor binding;7.6361012662045e-06!GO:0016787;hydrolase activity;7.97305825296629e-06!GO:0016567;protein ubiquitination;8.47404410405671e-06!GO:0009108;coenzyme biosynthetic process;9.96262737372275e-06!GO:0042981;regulation of apoptosis;1.02924494077937e-05!GO:0045449;regulation of transcription;1.22663355283453e-05!GO:0065004;protein-DNA complex assembly;1.31764484924749e-05!GO:0000151;ubiquitin ligase complex;1.39451297425717e-05!GO:0000075;cell cycle checkpoint;1.3954806312648e-05!GO:0051246;regulation of protein metabolic process;1.39923124991202e-05!GO:0003724;RNA helicase activity;1.41468745386063e-05!GO:0000785;chromatin;1.61330793789143e-05!GO:0005657;replication fork;1.622949977342e-05!GO:0035257;nuclear hormone receptor binding;1.64756416705934e-05!GO:0030867;rough endoplasmic reticulum membrane;2.05385661807378e-05!GO:0003690;double-stranded DNA binding;2.09525802574563e-05!GO:0000323;lytic vacuole;2.38578769855124e-05!GO:0005764;lysosome;2.38578769855124e-05!GO:0016481;negative regulation of transcription;2.3868447095765e-05!GO:0006793;phosphorus metabolic process;2.49103952901035e-05!GO:0006796;phosphate metabolic process;2.49103952901035e-05!GO:0007051;spindle organization and biogenesis;3.1951318812154e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.42647352560398e-05!GO:0007010;cytoskeleton organization and biogenesis;4.22518210148302e-05!GO:0051329;interphase of mitotic cell cycle;4.92251473168327e-05!GO:0051168;nuclear export;5.21895335756805e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.9209139523392e-05!GO:0005798;Golgi-associated vesicle;6.06032091191333e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.09588215604792e-05!GO:0000775;chromosome, pericentric region;6.1080993884357e-05!GO:0032561;guanyl ribonucleotide binding;6.11819426427827e-05!GO:0019001;guanyl nucleotide binding;6.11819426427827e-05!GO:0043069;negative regulation of programmed cell death;6.67559674751905e-05!GO:0006355;regulation of transcription, DNA-dependent;6.79486826105561e-05!GO:0043623;cellular protein complex assembly;6.81735549463678e-05!GO:0016310;phosphorylation;7.08932636829179e-05!GO:0003899;DNA-directed RNA polymerase activity;7.10529231707925e-05!GO:0003682;chromatin binding;7.10529231707925e-05!GO:0043021;ribonucleoprotein binding;7.18371557463509e-05!GO:0006333;chromatin assembly or disassembly;7.22446909986814e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.60888426652854e-05!GO:0065007;biological regulation;7.89017691142695e-05!GO:0005762;mitochondrial large ribosomal subunit;8.1934431541736e-05!GO:0000315;organellar large ribosomal subunit;8.1934431541736e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.77324302472403e-05!GO:0016363;nuclear matrix;9.07764578139574e-05!GO:0051325;interphase;0.000100414963882466!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103667092767131!GO:0005769;early endosome;0.000103890316440209!GO:0003729;mRNA binding;0.000118312234102862!GO:0043066;negative regulation of apoptosis;0.000118920701907377!GO:0006352;transcription initiation;0.000119106881592646!GO:0006302;double-strand break repair;0.000121725626101929!GO:0005048;signal sequence binding;0.000121725626101929!GO:0005874;microtubule;0.000129675484991757!GO:0016251;general RNA polymerase II transcription factor activity;0.000131960877485411!GO:0000139;Golgi membrane;0.000144061103883196!GO:0004576;oligosaccharyl transferase activity;0.000154225080716159!GO:0019899;enzyme binding;0.00015822893929459!GO:0008250;oligosaccharyl transferase complex;0.000159031760031034!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000172729406766917!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000211613018374243!GO:0005791;rough endoplasmic reticulum;0.000214286033805999!GO:0008094;DNA-dependent ATPase activity;0.000219533522985891!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000236490803172327!GO:0030133;transport vesicle;0.000242340145106229!GO:0046474;glycerophospholipid biosynthetic process;0.000242455744091036!GO:0000314;organellar small ribosomal subunit;0.000249414277651301!GO:0005763;mitochondrial small ribosomal subunit;0.000249414277651301!GO:0045454;cell redox homeostasis;0.000263032837923578!GO:0031968;organelle outer membrane;0.000282453299532574!GO:0006612;protein targeting to membrane;0.000285818405700604!GO:0003702;RNA polymerase II transcription factor activity;0.000294365090860502!GO:0004298;threonine endopeptidase activity;0.000302865727891865!GO:0019867;outer membrane;0.000309967171913279!GO:0046489;phosphoinositide biosynthetic process;0.000311478849740267!GO:0003677;DNA binding;0.000315644302806029!GO:0051052;regulation of DNA metabolic process;0.00031907265343325!GO:0008186;RNA-dependent ATPase activity;0.00032844248665285!GO:0000776;kinetochore;0.000361404508050476!GO:0019843;rRNA binding;0.000366436016209783!GO:0006891;intra-Golgi vesicle-mediated transport;0.000370975365200823!GO:0031072;heat shock protein binding;0.000413528186733855!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000503725300682774!GO:0006383;transcription from RNA polymerase III promoter;0.000503786367607033!GO:0009165;nucleotide biosynthetic process;0.000518390142149789!GO:0006916;anti-apoptosis;0.000520679952720303!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000592077786520872!GO:0006338;chromatin remodeling;0.000622791078222246!GO:0031252;leading edge;0.000647168078710573!GO:0008022;protein C-terminus binding;0.000685550250582142!GO:0003678;DNA helicase activity;0.0006949803836077!GO:0006310;DNA recombination;0.00071061566988132!GO:0005885;Arp2/3 protein complex;0.000723209263518646!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000759170043401807!GO:0016491;oxidoreductase activity;0.00078415826610605!GO:0006091;generation of precursor metabolites and energy;0.000800287749156228!GO:0007093;mitotic cell cycle checkpoint;0.00081607857857041!GO:0005905;coated pit;0.000837001556771242!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000869891600491485!GO:0030880;RNA polymerase complex;0.000888871486062304!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000968773335674701!GO:0004004;ATP-dependent RNA helicase activity;0.000968967832033942!GO:0030521;androgen receptor signaling pathway;0.000998610826738119!GO:0045045;secretory pathway;0.00110067042472898!GO:0005741;mitochondrial outer membrane;0.00110563627941541!GO:0007040;lysosome organization and biogenesis;0.00111222594852201!GO:0051920;peroxiredoxin activity;0.00125086837624007!GO:0018196;peptidyl-asparagine modification;0.00129151456020412!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00129151456020412!GO:0006402;mRNA catabolic process;0.00129659278015513!GO:0046467;membrane lipid biosynthetic process;0.00136909365298606!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00144342791793872!GO:0015399;primary active transmembrane transporter activity;0.00144342791793872!GO:0045892;negative regulation of transcription, DNA-dependent;0.00151478609593222!GO:0007059;chromosome segregation;0.00154353653313762!GO:0045893;positive regulation of transcription, DNA-dependent;0.00159406323526193!GO:0000059;protein import into nucleus, docking;0.00164695649108461!GO:0008139;nuclear localization sequence binding;0.00167723972378484!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00171222471700344!GO:0000428;DNA-directed RNA polymerase complex;0.00171222471700344!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00182769515092738!GO:0007017;microtubule-based process;0.00189473609963677!GO:0044452;nucleolar part;0.0019436575064451!GO:0048500;signal recognition particle;0.00197284243037964!GO:0007052;mitotic spindle organization and biogenesis;0.00203230566636979!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00206939401792612!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00206939401792612!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00206939401792612!GO:0030036;actin cytoskeleton organization and biogenesis;0.00207913004624179!GO:0030134;ER to Golgi transport vesicle;0.00211828431314062!GO:0016197;endosome transport;0.0023400524154381!GO:0043681;protein import into mitochondrion;0.00250090251991282!GO:0007033;vacuole organization and biogenesis;0.00252901601155824!GO:0006626;protein targeting to mitochondrion;0.00255006817559302!GO:0030384;phosphoinositide metabolic process;0.00255266422715528!GO:0007243;protein kinase cascade;0.0026084509000737!GO:0003684;damaged DNA binding;0.00261763093683804!GO:0007088;regulation of mitosis;0.00278657898927836!GO:0030663;COPI coated vesicle membrane;0.0029021821279108!GO:0030126;COPI vesicle coat;0.0029021821279108!GO:0006818;hydrogen transport;0.00301105866080519!GO:0030176;integral to endoplasmic reticulum membrane;0.00306771956410133!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00308979597116987!GO:0035258;steroid hormone receptor binding;0.00313998608627332!GO:0048522;positive regulation of cellular process;0.00318073655436032!GO:0015992;proton transport;0.00318073655436032!GO:0051087;chaperone binding;0.00321496839499738!GO:0008033;tRNA processing;0.00325643053823224!GO:0030518;steroid hormone receptor signaling pathway;0.00327003394309896!GO:0045941;positive regulation of transcription;0.00334289831546757!GO:0030127;COPII vesicle coat;0.00334841084625376!GO:0012507;ER to Golgi transport vesicle membrane;0.00334841084625376!GO:0015631;tubulin binding;0.00335184400299421!GO:0008361;regulation of cell size;0.00340086314339226!GO:0048471;perinuclear region of cytoplasm;0.00340335274599531!GO:0004527;exonuclease activity;0.00347871952226628!GO:0008312;7S RNA binding;0.00364159521337337!GO:0006650;glycerophospholipid metabolic process;0.00365303586712819!GO:0007050;cell cycle arrest;0.00399890320002452!GO:0004674;protein serine/threonine kinase activity;0.00410551009924607!GO:0030137;COPI-coated vesicle;0.00415612935141997!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00442272235309729!GO:0045047;protein targeting to ER;0.00442272235309729!GO:0006505;GPI anchor metabolic process;0.00480094912225549!GO:0016126;sterol biosynthetic process;0.00483031782776731!GO:0008092;cytoskeletal protein binding;0.00485570880766801!GO:0000049;tRNA binding;0.00488312723261563!GO:0006506;GPI anchor biosynthetic process;0.00489951199450591!GO:0005684;U2-dependent spliceosome;0.00490530158270162!GO:0006401;RNA catabolic process;0.00497255576795669!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00506941324431434!GO:0007006;mitochondrial membrane organization and biogenesis;0.00517221891754008!GO:0005876;spindle microtubule;0.00517221891754008!GO:0042158;lipoprotein biosynthetic process;0.00517573373576995!GO:0030658;transport vesicle membrane;0.0052079064242622!GO:0006405;RNA export from nucleus;0.0052079064242622!GO:0005637;nuclear inner membrane;0.00533945569171252!GO:0042802;identical protein binding;0.00553245336547989!GO:0006839;mitochondrial transport;0.00568552629777763!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00580161632007927!GO:0006414;translational elongation;0.00588339213846519!GO:0005869;dynactin complex;0.00602644293095858!GO:0031124;mRNA 3'-end processing;0.00612831134398376!GO:0006497;protein amino acid lipidation;0.00624513920522879!GO:0051252;regulation of RNA metabolic process;0.00630820558468883!GO:0030118;clathrin coat;0.00634602488632089!GO:0006275;regulation of DNA replication;0.00644044082120348!GO:0016049;cell growth;0.00655852206924696!GO:0051287;NAD binding;0.00662049330474953!GO:0032200;telomere organization and biogenesis;0.00669392113275032!GO:0000723;telomere maintenance;0.00669392113275032!GO:0006376;mRNA splice site selection;0.00678510013795359!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00678510013795359!GO:0008270;zinc ion binding;0.00679018427120615!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00698769891434582!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00698769891434582!GO:0008168;methyltransferase activity;0.00703056624438445!GO:0008610;lipid biosynthetic process;0.007296381878013!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00733394648823069!GO:0048487;beta-tubulin binding;0.0073702908636225!GO:0032508;DNA duplex unwinding;0.00753368606915894!GO:0032392;DNA geometric change;0.00753368606915894!GO:0016741;transferase activity, transferring one-carbon groups;0.00761125823491582!GO:0006595;polyamine metabolic process;0.00770979579550046!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0078738387696495!GO:0017166;vinculin binding;0.00792289233004408!GO:0030029;actin filament-based process;0.0079882397522213!GO:0006611;protein export from nucleus;0.00820999021720435!GO:0051101;regulation of DNA binding;0.00821008850011901!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00856704988193684!GO:0022890;inorganic cation transmembrane transporter activity;0.00856791573829427!GO:0031902;late endosome membrane;0.00864905890061477!GO:0006892;post-Golgi vesicle-mediated transport;0.00875991839591941!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00885413175959027!GO:0003711;transcription elongation regulator activity;0.00897316360487226!GO:0000096;sulfur amino acid metabolic process;0.00901763343810174!GO:0006672;ceramide metabolic process;0.00920892661327421!GO:0031901;early endosome membrane;0.00933446768002442!GO:0043433;negative regulation of transcription factor activity;0.00935700331579047!GO:0006984;ER-nuclear signaling pathway;0.00971373958936816!GO:0044262;cellular carbohydrate metabolic process;0.0106773114333417!GO:0043284;biopolymer biosynthetic process;0.0107777990912954!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0111792341046681!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0112156548616147!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0112605113882309!GO:0005832;chaperonin-containing T-complex;0.0113457573324757!GO:0008180;signalosome;0.011508584787825!GO:0005669;transcription factor TFIID complex;0.0115349753104691!GO:0032039;integrator complex;0.0115685736975222!GO:0000910;cytokinesis;0.011702302609212!GO:0000082;G1/S transition of mitotic cell cycle;0.0118167318749282!GO:0007004;telomere maintenance via telomerase;0.0119117373479098!GO:0000922;spindle pole;0.0119527268912642!GO:0046914;transition metal ion binding;0.0119629005363655!GO:0043130;ubiquitin binding;0.0119912422680842!GO:0032182;small conjugating protein binding;0.0119912422680842!GO:0043022;ribosome binding;0.0124122833210925!GO:0006268;DNA unwinding during replication;0.0126994123493514!GO:0043492;ATPase activity, coupled to movement of substances;0.0127753805341434!GO:0030660;Golgi-associated vesicle membrane;0.0130252180441106!GO:0030433;ER-associated protein catabolic process;0.013353200208288!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.013353200208288!GO:0000339;RNA cap binding;0.0135035443817798!GO:0016044;membrane organization and biogenesis;0.0135409944722131!GO:0050681;androgen receptor binding;0.0139966178531692!GO:0006695;cholesterol biosynthetic process;0.0139966178531692!GO:0005862;muscle thin filament tropomyosin;0.0141735379264244!GO:0051539;4 iron, 4 sulfur cluster binding;0.0141761129801486!GO:0005774;vacuolar membrane;0.0143364167207805!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0144062280728117!GO:0043488;regulation of mRNA stability;0.0144062280728117!GO:0043487;regulation of RNA stability;0.0144062280728117!GO:0030522;intracellular receptor-mediated signaling pathway;0.0145546651451078!GO:0004177;aminopeptidase activity;0.0151625556662506!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.01526091909699!GO:0015002;heme-copper terminal oxidase activity;0.01526091909699!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.01526091909699!GO:0004129;cytochrome-c oxidase activity;0.01526091909699!GO:0046966;thyroid hormone receptor binding;0.0153768315320997!GO:0047485;protein N-terminus binding;0.0154068096907672!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0154940261595306!GO:0051059;NF-kappaB binding;0.0157006537675789!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.016221263015928!GO:0003923;GPI-anchor transamidase activity;0.0162668908899298!GO:0016255;attachment of GPI anchor to protein;0.0162668908899298!GO:0042765;GPI-anchor transamidase complex;0.0162668908899298!GO:0051540;metal cluster binding;0.0164472489635396!GO:0051536;iron-sulfur cluster binding;0.0164472489635396!GO:0006378;mRNA polyadenylation;0.017463281264433!GO:0007021;tubulin folding;0.0175611190931504!GO:0030119;AP-type membrane coat adaptor complex;0.0175666896215223!GO:0031625;ubiquitin protein ligase binding;0.0179884409684806!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0186706951609299!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0187022674946701!GO:0065009;regulation of a molecular function;0.0190556123698183!GO:0031123;RNA 3'-end processing;0.019131986782822!GO:0042393;histone binding;0.0191688480806517!GO:0006289;nucleotide-excision repair;0.0193334603402176!GO:0030132;clathrin coat of coated pit;0.0196149147592377!GO:0006950;response to stress;0.0198165968396443!GO:0046483;heterocycle metabolic process;0.0199667053219039!GO:0046519;sphingoid metabolic process;0.0199667053219039!GO:0008097;5S rRNA binding;0.0208445131522055!GO:0000209;protein polyubiquitination;0.0209039713853869!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0216642929422188!GO:0030659;cytoplasmic vesicle membrane;0.0217543162685893!GO:0016407;acetyltransferase activity;0.0229434295145294!GO:0051098;regulation of binding;0.0230638596941043!GO:0006607;NLS-bearing substrate import into nucleus;0.0235547043147798!GO:0006643;membrane lipid metabolic process;0.0240484841489613!GO:0006467;protein thiol-disulfide exchange;0.0243545607741867!GO:0004518;nuclease activity;0.0246741619361719!GO:0000118;histone deacetylase complex;0.0249745313600502!GO:0033673;negative regulation of kinase activity;0.0249745313600502!GO:0006469;negative regulation of protein kinase activity;0.0249745313600502!GO:0031529;ruffle organization and biogenesis;0.0251190932099046!GO:0016272;prefoldin complex;0.0261712696381155!GO:0043624;cellular protein complex disassembly;0.0262913775982383!GO:0030131;clathrin adaptor complex;0.0269051695663847!GO:0000097;sulfur amino acid biosynthetic process;0.0272719176960472!GO:0008601;protein phosphatase type 2A regulator activity;0.02737189007069!GO:0007569;cell aging;0.027684794524493!GO:0043596;nuclear replication fork;0.027684794524493!GO:0051452;cellular pH reduction;0.0281219831940729!GO:0051453;regulation of cellular pH;0.0281219831940729!GO:0045851;pH reduction;0.0281219831940729!GO:0046983;protein dimerization activity;0.0282687634994406!GO:0009451;RNA modification;0.028996760960254!GO:0006979;response to oxidative stress;0.0295752073440604!GO:0007034;vacuolar transport;0.0298058485849873!GO:0030224;monocyte differentiation;0.0298651935544947!GO:0001558;regulation of cell growth;0.0299953809475549!GO:0044437;vacuolar part;0.0302616600550574!GO:0016180;snRNA processing;0.0302710546919375!GO:0016073;snRNA metabolic process;0.0302710546919375!GO:0022408;negative regulation of cell-cell adhesion;0.0302710546919375!GO:0032940;secretion by cell;0.0304230051314388!GO:0030503;regulation of cell redox homeostasis;0.0311338268187455!GO:0006284;base-excision repair;0.0314516321673582!GO:0051348;negative regulation of transferase activity;0.031739488537402!GO:0005784;translocon complex;0.0321254054032976!GO:0006740;NADPH regeneration;0.0321535223633212!GO:0006098;pentose-phosphate shunt;0.0321535223633212!GO:0044433;cytoplasmic vesicle part;0.0330400012644244!GO:0003746;translation elongation factor activity;0.0331974094312503!GO:0006509;membrane protein ectodomain proteolysis;0.0334311560905236!GO:0033619;membrane protein proteolysis;0.0334311560905236!GO:0008652;amino acid biosynthetic process;0.0334999517005729!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0335319601061777!GO:0008408;3'-5' exonuclease activity;0.0339525518583339!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.033959845603368!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339957534945327!GO:0035035;histone acetyltransferase binding;0.0341446016478341!GO:0007264;small GTPase mediated signal transduction;0.0341446016478341!GO:0008320;protein transmembrane transporter activity;0.0344891031884541!GO:0030027;lamellipodium;0.0349638281045793!GO:0017134;fibroblast growth factor binding;0.0353454279802471!GO:0000228;nuclear chromosome;0.0355186119368641!GO:0006778;porphyrin metabolic process;0.0355186119368641!GO:0033013;tetrapyrrole metabolic process;0.0355186119368641!GO:0031497;chromatin assembly;0.0356292346981509!GO:0003756;protein disulfide isomerase activity;0.0362966855960069!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0362966855960069!GO:0022884;macromolecule transmembrane transporter activity;0.0362966855960069!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0362966855960069!GO:0032984;macromolecular complex disassembly;0.0365784536448946!GO:0004003;ATP-dependent DNA helicase activity;0.0365854769495941!GO:0016408;C-acyltransferase activity;0.0370448463876538!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0372476978629344!GO:0031371;ubiquitin conjugating enzyme complex;0.0374038651338588!GO:0019783;small conjugating protein-specific protease activity;0.0376107574133353!GO:0032507;maintenance of cellular protein localization;0.0380104664716212!GO:0000086;G2/M transition of mitotic cell cycle;0.0385227621383804!GO:0000792;heterochromatin;0.0386740138657158!GO:0000781;chromosome, telomeric region;0.039079234722577!GO:0005765;lysosomal membrane;0.0396816054881095!GO:0000726;non-recombinational repair;0.0400684291309417!GO:0008538;proteasome activator activity;0.0411918717585973!GO:0006360;transcription from RNA polymerase I promoter;0.0411936912770277!GO:0004843;ubiquitin-specific protease activity;0.0423066650294425!GO:0022415;viral reproductive process;0.0428236886773014!GO:0015036;disulfide oxidoreductase activity;0.0430215285151653!GO:0000030;mannosyltransferase activity;0.0434938163834089!GO:0006520;amino acid metabolic process;0.0435473693871054!GO:0006144;purine base metabolic process;0.0436128886579786!GO:0006897;endocytosis;0.0447296814478036!GO:0010324;membrane invagination;0.0447296814478036!GO:0000178;exosome (RNase complex);0.0448204509746677!GO:0016584;nucleosome positioning;0.0452175854685706!GO:0006220;pyrimidine nucleotide metabolic process;0.0452872898820063!GO:0000123;histone acetyltransferase complex;0.0453975241100933!GO:0051053;negative regulation of DNA metabolic process;0.0458592821946114!GO:0012506;vesicle membrane;0.0459014820223604!GO:0042026;protein refolding;0.0461152216418109!GO:0007041;lysosomal transport;0.0461152216418109!GO:0043189;H4/H2A histone acetyltransferase complex;0.0466102056565109!GO:0007030;Golgi organization and biogenesis;0.0468110108796434!GO:0005875;microtubule associated complex;0.0470087214036855!GO:0019752;carboxylic acid metabolic process;0.0472541070753405!GO:0032259;methylation;0.0473640623500257!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0475810061821211!GO:0005938;cell cortex;0.04758187188393!GO:0008287;protein serine/threonine phosphatase complex;0.0477463100592073!GO:0050662;coenzyme binding;0.048399925326905!GO:0005586;collagen type III;0.0494811787982409!GO:0009112;nucleobase metabolic process;0.0495207666207388 | |||
|sample_id=10413 | |sample_id=10413 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 99: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58007627964;bHLH_family:1.0245002728;HSF1,2:0.98668410731;GZF1:0.969708444572;RXR{A,B,G}:0.950545164449;PAX4:0.950043194185;NFY{A,B,C}:0.925198241649;NFIX:0.916060504273;TOPORS:0.894700061811;EN1,2:0.888695275885;ELK1,4_GABP{A,B1}:0.816457901734;HOX{A5,B5}:0.805087433072;GFI1:0.77300668311;ZNF143:0.764453805036;AHR_ARNT_ARNT2:0.745794212975;POU6F1:0.729276163404;NRF1:0.727298545332;NKX6-1,2:0.713151823803;SOX17:0.688655480606;ZNF384:0.686265039629;TLX1..3_NFIC{dimer}:0.667475965097;E2F1..5:0.662852068764;SREBF1,2:0.651503681943;LHX3,4:0.646293663262;PITX1..3:0.605904338514;HAND1,2:0.596920708146;YY1:0.595299606675;HBP1_HMGB_SSRP1_UBTF:0.547419759469;ONECUT1,2:0.544492898778;FOXD3:0.51933656157;MAFB:0.51883395245;SOX2:0.501840395131;MZF1:0.497420431007;CREB1:0.490108697806;TFAP2B:0.488199906361;PAX1,9:0.481984182363;ARID5B:0.465661544148;HOXA9_MEIS1:0.439624268464;ZNF238:0.434063503051;PAX5:0.420261914333;PATZ1:0.41701982452;GATA4:0.401627251044;MAZ:0.397132225566;NKX3-1:0.385457196025;TBX4,5:0.384289571744;ZIC1..3:0.382448289523;GTF2I:0.380741135759;CUX2:0.376503498031;RFX1:0.358560552091;CDX1,2,4:0.350221175991;BACH2:0.339667307541;EVI1:0.335372184469;PDX1:0.334749235719;FOXQ1:0.33388114755;HLF:0.326181410544;VSX1,2:0.311690074614;CRX:0.263613872059;NR3C1:0.262198060775;AIRE:0.246052179192;NKX3-2:0.245912893796;PRRX1,2:0.242659836474;FOSL2:0.236436800513;MYB:0.23110905671;ZBTB6:0.221108069004;TEAD1:0.220359003191;MYFfamily:0.213002090245;RXRA_VDR{dimer}:0.209904076476;SMAD1..7,9:0.193855771291;RREB1:0.188066316076;HMGA1,2:0.185888185898;ESRRA:0.179268866712;POU1F1:0.170926533243;PRDM1:0.166067128188;NFE2:0.15255570889;ATF5_CREB3:0.148423442099;TFDP1:0.141789519399;FOXM1:0.135436829818;CDC5L:0.13442594119;ZFP161:0.13337972705;IKZF1:0.124762129803;ATF4:0.121392832514;NFE2L2:0.107207554451;BREu{core}:0.106549093166;PBX1:0.102648566031;SRF:0.100417585297;FOXP1:0.0798910084014;NR1H4:0.0700637140046;GATA6:0.0447883013118;RUNX1..3:0.042386864958;RFX2..5_RFXANK_RFXAP:0.0394430392694;ADNP_IRX_SIX_ZHX:0.0321282420821;GTF2A1,2:0.0318972350478;ZBTB16:0.0205299782694;MYBL2:0.0184974884228;TAL1_TCF{3,4,12}:0.00603272583401;TFAP4:0.000983451711223;ELF1,2,4:-0.00432009623008;JUN:-0.00521766625633;FOXP3:-0.00684510962584;XCPE1{core}:-0.0112403589558;NFIL3:-0.012812236273;TFAP2{A,C}:-0.0139533864022;CEBPA,B_DDIT3:-0.0178645412669;ZNF423:-0.0314419968191;MEF2{A,B,C,D}:-0.0342871516294;HNF1A:-0.038699384317;FOS_FOS{B,L1}_JUN{B,D}:-0.0420183105488;NFATC1..3:-0.0456956509363;T:-0.0509256805424;RORA:-0.0688000548516;LEF1_TCF7_TCF7L1,2:-0.0709056463336;PAX3,7:-0.0722871261496;UFEwm:-0.0989744540969;SOX{8,9,10}:-0.103651001901;TFCP2:-0.124543061422;HOX{A4,D4}:-0.134188242395;FOXA2:-0.13459399137;RBPJ:-0.16393611846;BPTF:-0.167573075151;IRF7:-0.167689280215;XBP1:-0.170496946759;HIF1A:-0.17833333396;KLF4:-0.183281465236;PAX8:-0.19005012972;HMX1:-0.194356001153;EGR1..3:-0.196184150185;GFI1B:-0.19798994927;HNF4A_NR2F1,2:-0.200243599203;SPZ1:-0.2077305145;TEF:-0.209787517049;EBF1:-0.215154811895;REST:-0.224233838622;NKX2-1,4:-0.228075986111;ATF6:-0.242861728094;ESR1:-0.257454542566;STAT1,3:-0.265151763441;NFE2L1:-0.269114653176;PAX2:-0.269269210921;TLX2:-0.276824002438;SP1:-0.278680281164;FOX{D1,D2}:-0.288482046116;MTE{core}:-0.289391867744;HIC1:-0.29130475141;FOX{F1,F2,J1}:-0.295899880164;IRF1,2:-0.297953333918;NFKB1_REL_RELA:-0.30011905656;FOXN1:-0.333769556393;OCT4_SOX2{dimer}:-0.340122330841;NR6A1:-0.353794605741;DMAP1_NCOR{1,2}_SMARC:-0.368344861539;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368581955843;NANOG:-0.383464678935;TBP:-0.389859114665;TP53:-0.394225537118;NKX2-2,8:-0.401092842561;LMO2:-0.413752167933;MED-1{core}:-0.413826303726;IKZF2:-0.414832854124;NHLH1,2:-0.433177502141;POU3F1..4:-0.434686071893;ALX4:-0.450440230321;DBP:-0.47061368742;NKX2-3_NKX2-5:-0.473391289221;SPIB:-0.475917478212;MYOD1:-0.482323075736;ATF2:-0.500062483376;FOX{I1,J2}:-0.502454011631;SPI1:-0.511480773203;STAT2,4,6:-0.515076050892;MTF1:-0.544979712573;HES1:-0.555232278736;POU5F1:-0.580808599796;NR5A1,2:-0.586776988024;ETS1,2:-0.608717993869;SNAI1..3:-0.615990193532;ZNF148:-0.640720897951;GLI1..3:-0.642864268572;GCM1,2:-0.647258276763;SOX5:-0.665294915975;PPARG:-0.704722763059;ALX1:-0.725924127972;ZEB1:-0.763655843157;EP300:-0.766746252279;NANOG{mouse}:-0.7882971492;AR:-0.789989173971;TGIF1:-0.860504568575;FOXO1,3,4:-0.909853091812;STAT5{A,B}:-0.94267440659;HOX{A6,A7,B6,B7}:-0.962443477229;PAX6:-1.23341566523;POU2F1..3:-1.5675776398;FOXL1:-1.62787901201 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58007627964;bHLH_family:1.0245002728;HSF1,2:0.98668410731;GZF1:0.969708444572;RXR{A,B,G}:0.950545164449;PAX4:0.950043194185;NFY{A,B,C}:0.925198241649;NFIX:0.916060504273;TOPORS:0.894700061811;EN1,2:0.888695275885;ELK1,4_GABP{A,B1}:0.816457901734;HOX{A5,B5}:0.805087433072;GFI1:0.77300668311;ZNF143:0.764453805036;AHR_ARNT_ARNT2:0.745794212975;POU6F1:0.729276163404;NRF1:0.727298545332;NKX6-1,2:0.713151823803;SOX17:0.688655480606;ZNF384:0.686265039629;TLX1..3_NFIC{dimer}:0.667475965097;E2F1..5:0.662852068764;SREBF1,2:0.651503681943;LHX3,4:0.646293663262;PITX1..3:0.605904338514;HAND1,2:0.596920708146;YY1:0.595299606675;HBP1_HMGB_SSRP1_UBTF:0.547419759469;ONECUT1,2:0.544492898778;FOXD3:0.51933656157;MAFB:0.51883395245;SOX2:0.501840395131;MZF1:0.497420431007;CREB1:0.490108697806;TFAP2B:0.488199906361;PAX1,9:0.481984182363;ARID5B:0.465661544148;HOXA9_MEIS1:0.439624268464;ZNF238:0.434063503051;PAX5:0.420261914333;PATZ1:0.41701982452;GATA4:0.401627251044;MAZ:0.397132225566;NKX3-1:0.385457196025;TBX4,5:0.384289571744;ZIC1..3:0.382448289523;GTF2I:0.380741135759;CUX2:0.376503498031;RFX1:0.358560552091;CDX1,2,4:0.350221175991;BACH2:0.339667307541;EVI1:0.335372184469;PDX1:0.334749235719;FOXQ1:0.33388114755;HLF:0.326181410544;VSX1,2:0.311690074614;CRX:0.263613872059;NR3C1:0.262198060775;AIRE:0.246052179192;NKX3-2:0.245912893796;PRRX1,2:0.242659836474;FOSL2:0.236436800513;MYB:0.23110905671;ZBTB6:0.221108069004;TEAD1:0.220359003191;MYFfamily:0.213002090245;RXRA_VDR{dimer}:0.209904076476;SMAD1..7,9:0.193855771291;RREB1:0.188066316076;HMGA1,2:0.185888185898;ESRRA:0.179268866712;POU1F1:0.170926533243;PRDM1:0.166067128188;NFE2:0.15255570889;ATF5_CREB3:0.148423442099;TFDP1:0.141789519399;FOXM1:0.135436829818;CDC5L:0.13442594119;ZFP161:0.13337972705;IKZF1:0.124762129803;ATF4:0.121392832514;NFE2L2:0.107207554451;BREu{core}:0.106549093166;PBX1:0.102648566031;SRF:0.100417585297;FOXP1:0.0798910084014;NR1H4:0.0700637140046;GATA6:0.0447883013118;RUNX1..3:0.042386864958;RFX2..5_RFXANK_RFXAP:0.0394430392694;ADNP_IRX_SIX_ZHX:0.0321282420821;GTF2A1,2:0.0318972350478;ZBTB16:0.0205299782694;MYBL2:0.0184974884228;TAL1_TCF{3,4,12}:0.00603272583401;TFAP4:0.000983451711223;ELF1,2,4:-0.00432009623008;JUN:-0.00521766625633;FOXP3:-0.00684510962584;XCPE1{core}:-0.0112403589558;NFIL3:-0.012812236273;TFAP2{A,C}:-0.0139533864022;CEBPA,B_DDIT3:-0.0178645412669;ZNF423:-0.0314419968191;MEF2{A,B,C,D}:-0.0342871516294;HNF1A:-0.038699384317;FOS_FOS{B,L1}_JUN{B,D}:-0.0420183105488;NFATC1..3:-0.0456956509363;T:-0.0509256805424;RORA:-0.0688000548516;LEF1_TCF7_TCF7L1,2:-0.0709056463336;PAX3,7:-0.0722871261496;UFEwm:-0.0989744540969;SOX{8,9,10}:-0.103651001901;TFCP2:-0.124543061422;HOX{A4,D4}:-0.134188242395;FOXA2:-0.13459399137;RBPJ:-0.16393611846;BPTF:-0.167573075151;IRF7:-0.167689280215;XBP1:-0.170496946759;HIF1A:-0.17833333396;KLF4:-0.183281465236;PAX8:-0.19005012972;HMX1:-0.194356001153;EGR1..3:-0.196184150185;GFI1B:-0.19798994927;HNF4A_NR2F1,2:-0.200243599203;SPZ1:-0.2077305145;TEF:-0.209787517049;EBF1:-0.215154811895;REST:-0.224233838622;NKX2-1,4:-0.228075986111;ATF6:-0.242861728094;ESR1:-0.257454542566;STAT1,3:-0.265151763441;NFE2L1:-0.269114653176;PAX2:-0.269269210921;TLX2:-0.276824002438;SP1:-0.278680281164;FOX{D1,D2}:-0.288482046116;MTE{core}:-0.289391867744;HIC1:-0.29130475141;FOX{F1,F2,J1}:-0.295899880164;IRF1,2:-0.297953333918;NFKB1_REL_RELA:-0.30011905656;FOXN1:-0.333769556393;OCT4_SOX2{dimer}:-0.340122330841;NR6A1:-0.353794605741;DMAP1_NCOR{1,2}_SMARC:-0.368344861539;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368581955843;NANOG:-0.383464678935;TBP:-0.389859114665;TP53:-0.394225537118;NKX2-2,8:-0.401092842561;LMO2:-0.413752167933;MED-1{core}:-0.413826303726;IKZF2:-0.414832854124;NHLH1,2:-0.433177502141;POU3F1..4:-0.434686071893;ALX4:-0.450440230321;DBP:-0.47061368742;NKX2-3_NKX2-5:-0.473391289221;SPIB:-0.475917478212;MYOD1:-0.482323075736;ATF2:-0.500062483376;FOX{I1,J2}:-0.502454011631;SPI1:-0.511480773203;STAT2,4,6:-0.515076050892;MTF1:-0.544979712573;HES1:-0.555232278736;POU5F1:-0.580808599796;NR5A1,2:-0.586776988024;ETS1,2:-0.608717993869;SNAI1..3:-0.615990193532;ZNF148:-0.640720897951;GLI1..3:-0.642864268572;GCM1,2:-0.647258276763;SOX5:-0.665294915975;PPARG:-0.704722763059;ALX1:-0.725924127972;ZEB1:-0.763655843157;EP300:-0.766746252279;NANOG{mouse}:-0.7882971492;AR:-0.789989173971;TGIF1:-0.860504568575;FOXO1,3,4:-0.909853091812;STAT5{A,B}:-0.94267440659;HOX{A6,A7,B6,B7}:-0.962443477229;PAX6:-1.23341566523;POU2F1..3:-1.5675776398;FOXL1:-1.62787901201 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10413-106B8;search_select_hide=table117:FF:10413-106B8 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | glioma cell line:GI-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10731 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10731
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10731
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.453 |
| 10 | 10 | 0.74 |
| 100 | 100 | 0.965 |
| 101 | 101 | 0.623 |
| 102 | 102 | 0.624 |
| 103 | 103 | 0.252 |
| 104 | 104 | 0.394 |
| 105 | 105 | 0.634 |
| 106 | 106 | 2.36851e-4 |
| 107 | 107 | 0.193 |
| 108 | 108 | 0.497 |
| 109 | 109 | 0.109 |
| 11 | 11 | 0.312 |
| 110 | 110 | 0.589 |
| 111 | 111 | 0.588 |
| 112 | 112 | 0.0645 |
| 113 | 113 | 0.071 |
| 114 | 114 | 0.0179 |
| 115 | 115 | 0.631 |
| 116 | 116 | 0.805 |
| 117 | 117 | 0.389 |
| 118 | 118 | 0.906 |
| 119 | 119 | 0.0399 |
| 12 | 12 | 0.312 |
| 120 | 120 | 0.799 |
| 121 | 121 | 0.929 |
| 122 | 122 | 0.169 |
| 123 | 123 | 0.396 |
| 124 | 124 | 0.925 |
| 125 | 125 | 0.401 |
| 126 | 126 | 0.217 |
| 127 | 127 | 0.66 |
| 128 | 128 | 0.0139 |
| 129 | 129 | 0.0148 |
| 13 | 13 | 0.894 |
| 130 | 130 | 0.148 |
| 131 | 131 | 0.369 |
| 132 | 132 | 0.207 |
| 133 | 133 | 0.0874 |
| 134 | 134 | 0.988 |
| 135 | 135 | 0.134 |
| 136 | 136 | 0.351 |
| 137 | 137 | 0.534 |
| 138 | 138 | 0.167 |
| 139 | 139 | 0.0595 |
| 14 | 14 | 0.997 |
| 140 | 140 | 0.977 |
| 141 | 141 | 0.351 |
| 142 | 142 | 0.997 |
| 143 | 143 | 0.0112 |
| 144 | 144 | 0.891 |
| 145 | 145 | 0.219 |
| 146 | 146 | 0.564 |
| 147 | 147 | 0.858 |
| 148 | 148 | 0.0898 |
| 149 | 149 | 0.18 |
| 15 | 15 | 0.294 |
| 150 | 150 | 0.562 |
| 151 | 151 | 0.551 |
| 152 | 152 | 0.138 |
| 153 | 153 | 0.997 |
| 154 | 154 | 0.808 |
| 155 | 155 | 0.668 |
| 156 | 156 | 0.739 |
| 157 | 157 | 0.712 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.614 |
| 16 | 16 | 0.263 |
| 160 | 160 | 0.124 |
| 161 | 161 | 0.214 |
| 162 | 162 | 0.492 |
| 163 | 163 | 0.956 |
| 164 | 164 | 0.417 |
| 165 | 165 | 0.0136 |
| 166 | 166 | 0.753 |
| 167 | 167 | 0.248 |
| 168 | 168 | 0.933 |
| 169 | 169 | 0.209 |
| 17 | 17 | 0.492 |
| 18 | 18 | 0.75 |
| 19 | 19 | 0.237 |
| 2 | 2 | 0.441 |
| 20 | 20 | 0.811 |
| 21 | 21 | 0.883 |
| 22 | 22 | 0.435 |
| 23 | 23 | 0.0164 |
| 24 | 24 | 0.99 |
| 25 | 25 | 0.128 |
| 26 | 26 | 0.33 |
| 27 | 27 | 0.211 |
| 28 | 28 | 0.897 |
| 29 | 29 | 0.985 |
| 3 | 3 | 0.714 |
| 30 | 30 | 0.67 |
| 31 | 31 | 0.224 |
| 32 | 32 | 0.153 |
| 33 | 33 | 0.432 |
| 34 | 34 | 0.418 |
| 35 | 35 | 0.803 |
| 36 | 36 | 0.102 |
| 37 | 37 | 0.706 |
| 38 | 38 | 0.125 |
| 39 | 39 | 0.429 |
| 4 | 4 | 0.905 |
| 40 | 40 | 0.139 |
| 41 | 41 | 0.0509 |
| 42 | 42 | 0.879 |
| 43 | 43 | 0.104 |
| 44 | 44 | 0.191 |
| 45 | 45 | 0.352 |
| 46 | 46 | 0.217 |
| 47 | 47 | 0.995 |
| 48 | 48 | 0.331 |
| 49 | 49 | 0.188 |
| 5 | 5 | 0.37 |
| 50 | 50 | 0.878 |
| 51 | 51 | 0.817 |
| 52 | 52 | 0.0776 |
| 53 | 53 | 0.757 |
| 54 | 54 | 0.616 |
| 55 | 55 | 0.945 |
| 56 | 56 | 0.882 |
| 57 | 57 | 0.715 |
| 58 | 58 | 0.0648 |
| 59 | 59 | 0.0436 |
| 6 | 6 | 0.348 |
| 60 | 60 | 0.0263 |
| 61 | 61 | 0.857 |
| 62 | 62 | 0.00157 |
| 63 | 63 | 0.236 |
| 64 | 64 | 0.901 |
| 65 | 65 | 0.0209 |
| 66 | 66 | 0.0555 |
| 67 | 67 | 0.84 |
| 68 | 68 | 0.832 |
| 69 | 69 | 0.442 |
| 7 | 7 | 0.229 |
| 70 | 70 | 0.02 |
| 71 | 71 | 0.691 |
| 72 | 72 | 0.576 |
| 73 | 73 | 0.383 |
| 74 | 74 | 0.66 |
| 75 | 75 | 0.923 |
| 76 | 76 | 0.853 |
| 77 | 77 | 0.486 |
| 78 | 78 | 0.0709 |
| 79 | 79 | 0.368 |
| 8 | 8 | 0.383 |
| 80 | 80 | 0.528 |
| 81 | 81 | 0.631 |
| 82 | 82 | 0.0193 |
| 83 | 83 | 0.852 |
| 84 | 84 | 0.704 |
| 85 | 85 | 0.115 |
| 86 | 86 | 0.91 |
| 87 | 87 | 0.338 |
| 88 | 88 | 0.78 |
| 89 | 89 | 0.0608 |
| 9 | 9 | 0.665 |
| 90 | 90 | 0.327 |
| 91 | 91 | 0.364 |
| 92 | 92 | 0.0759 |
| 93 | 93 | 0.205 |
| 94 | 94 | 0.143 |
| 95 | 95 | 0.439 |
| 96 | 96 | 0.198 |
| 97 | 97 | 0.234 |
| 98 | 98 | 0.0136 |
| 99 | 99 | 0.909 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10731
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100711 glioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)
