FF:11237-116D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005461 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005461 | ||
|accession_numbers=CAGE;DRX008260;DRR009132;DRZ000557;DRZ001942;DRZ011907;DRZ013292 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037014;DRR041380;DRZ007022 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11237-116D4 | |id=FF:11237-116D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |||
|library_id=CNhs10866 | |||
|library_id_phase_based=2:CNhs10866 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11237 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACAGTG.11237 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11237 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACAGTG.11237 | |||
|name=Fibroblast - Gingival, donor1 | |name=Fibroblast - Gingival, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10866,LSID702,release008,COMPLETED | |profile_hcage=CNhs10866,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0116202781284286,0,0.0281549376317313,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.152758534912623,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.103955322999594,0,0,0,0,0,0,0,0,0.0161260261017313,0,0,0,0.259263298720939,0,0,0,-0.0969923612426051,0,0,-0.0166615327839657,0,0,0,0,0,0,0,0,0.0806820944291313,0,0,0,0,0,0,0,0,0.00455729532614169,0.0403410472145656,0,0.121348637236306,0,0,0,0,0.103744813512758,0,0,-0.154844481693344,-0.058438867783246,0,0.0806820944291313,0.0403410472145656,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427439045080611,0.0806820944291313,0,0,-0.0412839675918899,-0.121745745202993,0,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC2625 | |rna_catalog_number=SC2625 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D4 | |rna_tube_id=116D4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.ACAGTG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.91906091183124e-239!GO:0005737;cytoplasm;6.617037753904e-195!GO:0043226;organelle;4.12348848601339e-185!GO:0043229;intracellular organelle;8.24509300401785e-185!GO:0043231;intracellular membrane-bound organelle;1.51691939102831e-184!GO:0043227;membrane-bound organelle;3.3303439479012e-184!GO:0044444;cytoplasmic part;2.24928682722051e-142!GO:0044422;organelle part;1.34867545205412e-140!GO:0044446;intracellular organelle part;3.83017917701599e-139!GO:0032991;macromolecular complex;2.18984048804219e-93!GO:0044238;primary metabolic process;2.42637990570202e-90!GO:0044237;cellular metabolic process;9.98305839261685e-90!GO:0030529;ribonucleoprotein complex;1.23177964840716e-85!GO:0043170;macromolecule metabolic process;2.38722026326439e-78!GO:0043233;organelle lumen;6.0730226516183e-73!GO:0031974;membrane-enclosed lumen;6.0730226516183e-73!GO:0003723;RNA binding;7.90897892815885e-71!GO:0005739;mitochondrion;9.17235703321785e-70!GO:0044428;nuclear part;2.74268470021138e-69!GO:0005634;nucleus;1.65892785991546e-67!GO:0005515;protein binding;4.32146397644481e-66!GO:0031090;organelle membrane;9.50102793630408e-54!GO:0005840;ribosome;3.54295155529146e-53!GO:0019538;protein metabolic process;8.90179368357812e-51!GO:0006412;translation;8.88231471428395e-49!GO:0016043;cellular component organization and biogenesis;1.27638832471906e-47!GO:0006396;RNA processing;2.71398499769034e-47!GO:0044429;mitochondrial part;5.55637436092666e-47!GO:0003735;structural constituent of ribosome;4.13901637112731e-46!GO:0043234;protein complex;7.05937442407346e-46!GO:0033036;macromolecule localization;1.00785436700354e-45!GO:0015031;protein transport;2.21476555655489e-45!GO:0009058;biosynthetic process;2.71115211836159e-45!GO:0044260;cellular macromolecule metabolic process;4.29360938375101e-45!GO:0044267;cellular protein metabolic process;1.80878145685818e-44!GO:0031981;nuclear lumen;2.94997256935826e-42!GO:0045184;establishment of protein localization;5.73399838363238e-42!GO:0008104;protein localization;8.62642505567474e-42!GO:0005829;cytosol;1.48658190575573e-41!GO:0043283;biopolymer metabolic process;2.44798872866932e-41!GO:0031967;organelle envelope;4.70262038761676e-41!GO:0031975;envelope;1.17900224141079e-40!GO:0009059;macromolecule biosynthetic process;5.86949478606824e-40!GO:0033279;ribosomal subunit;1.09590279376792e-39!GO:0044249;cellular biosynthetic process;1.14161844233525e-39!GO:0010467;gene expression;1.14085162421669e-38!GO:0016071;mRNA metabolic process;2.40677272884582e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.45545766754058e-35!GO:0008380;RNA splicing;1.11956860137386e-34!GO:0046907;intracellular transport;2.72355147384045e-34!GO:0065003;macromolecular complex assembly;5.41401861287839e-32!GO:0006397;mRNA processing;9.35362829778772e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11342047290072e-30!GO:0005740;mitochondrial envelope;6.47431001507616e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.92025318445446e-30!GO:0006886;intracellular protein transport;1.88077364283493e-29!GO:0043228;non-membrane-bound organelle;4.08008597979241e-29!GO:0043232;intracellular non-membrane-bound organelle;4.08008597979241e-29!GO:0006996;organelle organization and biogenesis;2.18274211868035e-28!GO:0022607;cellular component assembly;2.65705871431627e-28!GO:0031966;mitochondrial membrane;2.84521408482012e-28!GO:0019866;organelle inner membrane;1.05927998504277e-26!GO:0005654;nucleoplasm;3.06072557742397e-26!GO:0005743;mitochondrial inner membrane;2.82826450803202e-25!GO:0044445;cytosolic part;7.48692110238197e-24!GO:0005681;spliceosome;1.16699805188267e-23!GO:0051641;cellular localization;4.78029933079333e-23!GO:0051649;establishment of cellular localization;5.8117488054013e-23!GO:0000166;nucleotide binding;8.12722950523948e-23!GO:0006259;DNA metabolic process;3.55451791819672e-22!GO:0012505;endomembrane system;6.85771471579164e-22!GO:0006119;oxidative phosphorylation;1.11583262944654e-21!GO:0003676;nucleic acid binding;1.41015567248311e-21!GO:0006457;protein folding;2.42920421228102e-21!GO:0044451;nucleoplasm part;4.32958211698048e-21!GO:0031980;mitochondrial lumen;7.36740711759236e-21!GO:0005759;mitochondrial matrix;7.36740711759236e-21!GO:0015935;small ribosomal subunit;8.03460925895047e-21!GO:0016462;pyrophosphatase activity;1.81980745828246e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.97330908247119e-20!GO:0005783;endoplasmic reticulum;2.16103973757168e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.22251075854989e-20!GO:0015934;large ribosomal subunit;7.11784028247421e-20!GO:0017111;nucleoside-triphosphatase activity;1.30445825976848e-19!GO:0022618;protein-RNA complex assembly;2.28744495377933e-19!GO:0044455;mitochondrial membrane part;4.49812147314482e-19!GO:0048770;pigment granule;8.37089027368957e-19!GO:0042470;melanosome;8.37089027368957e-19!GO:0016874;ligase activity;1.87869113598618e-18!GO:0051186;cofactor metabolic process;2.96731329271297e-18!GO:0005730;nucleolus;1.34210825572428e-17!GO:0006512;ubiquitin cycle;1.78081340520056e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.70349520484241e-17!GO:0044432;endoplasmic reticulum part;3.0135865148295e-17!GO:0008135;translation factor activity, nucleic acid binding;3.80941861165821e-17!GO:0043285;biopolymer catabolic process;3.82593242604734e-17!GO:0044265;cellular macromolecule catabolic process;4.96488561233845e-17!GO:0007049;cell cycle;5.09709830845072e-17!GO:0019941;modification-dependent protein catabolic process;5.32093554326927e-17!GO:0043632;modification-dependent macromolecule catabolic process;5.32093554326927e-17!GO:0005794;Golgi apparatus;5.72616647130588e-17!GO:0006511;ubiquitin-dependent protein catabolic process;6.25694478709983e-17!GO:0044257;cellular protein catabolic process;8.98919157566034e-17!GO:0005746;mitochondrial respiratory chain;1.35517725491556e-16!GO:0016070;RNA metabolic process;3.54660255595818e-16!GO:0017076;purine nucleotide binding;3.70665057209112e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.30460130588033e-16!GO:0044248;cellular catabolic process;7.22220467458908e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.22220467458908e-16!GO:0009057;macromolecule catabolic process;1.3688475410992e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.74659782297563e-15!GO:0032553;ribonucleotide binding;2.36487817196819e-15!GO:0032555;purine ribonucleotide binding;2.36487817196819e-15!GO:0030163;protein catabolic process;2.51116561190721e-15!GO:0008134;transcription factor binding;3.09960150472906e-15!GO:0006605;protein targeting;1.03586255156063e-14!GO:0048193;Golgi vesicle transport;1.46283551500436e-14!GO:0005761;mitochondrial ribosome;1.46283551500436e-14!GO:0000313;organellar ribosome;1.46283551500436e-14!GO:0016192;vesicle-mediated transport;2.82175438024878e-14!GO:0006732;coenzyme metabolic process;3.00247565874933e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.21429366054687e-14!GO:0003954;NADH dehydrogenase activity;3.21429366054687e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.21429366054687e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23255287587989e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.32311453818783e-13!GO:0030554;adenyl nucleotide binding;1.61074231540242e-13!GO:0003743;translation initiation factor activity;1.85615241838999e-13!GO:0006974;response to DNA damage stimulus;1.9141276635751e-13!GO:0005524;ATP binding;3.87281885948054e-13!GO:0051082;unfolded protein binding;5.03271779720894e-13!GO:0022402;cell cycle process;5.18372715110029e-13!GO:0032559;adenyl ribonucleotide binding;7.48718753573116e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.87204037622383e-13!GO:0042773;ATP synthesis coupled electron transport;8.87204037622383e-13!GO:0006413;translational initiation;8.89218218454083e-13!GO:0043412;biopolymer modification;9.13286918976982e-13!GO:0005793;ER-Golgi intermediate compartment;1.00993598315543e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.56331236893748e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.60020112795433e-12!GO:0045271;respiratory chain complex I;1.60020112795433e-12!GO:0005747;mitochondrial respiratory chain complex I;1.60020112795433e-12!GO:0042254;ribosome biogenesis and assembly;1.98266297739948e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.98584459654014e-12!GO:0000375;RNA splicing, via transesterification reactions;1.98584459654014e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.98584459654014e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.01421637619221e-12!GO:0005789;endoplasmic reticulum membrane;4.91609636668487e-12!GO:0005635;nuclear envelope;5.46621665090106e-12!GO:0009055;electron carrier activity;7.52093357127674e-12!GO:0000278;mitotic cell cycle;8.98639267116794e-12!GO:0031965;nuclear membrane;1.19738778670716e-11!GO:0016604;nuclear body;1.42195114894219e-11!GO:0006464;protein modification process;4.11874347247963e-11!GO:0006446;regulation of translational initiation;5.10929943032432e-11!GO:0009259;ribonucleotide metabolic process;7.77342978314177e-11!GO:0006281;DNA repair;8.41860262640369e-11!GO:0044453;nuclear membrane part;9.98785437573123e-11!GO:0006163;purine nucleotide metabolic process;1.14375889962077e-10!GO:0042623;ATPase activity, coupled;1.34608219647836e-10!GO:0016887;ATPase activity;1.35688361461761e-10!GO:0009056;catabolic process;2.4304177870323e-10!GO:0006913;nucleocytoplasmic transport;2.46576635154714e-10!GO:0004386;helicase activity;2.75548837905683e-10!GO:0009150;purine ribonucleotide metabolic process;3.7605949037146e-10!GO:0008639;small protein conjugating enzyme activity;4.52281152670219e-10!GO:0051169;nuclear transport;5.73939402258207e-10!GO:0006399;tRNA metabolic process;6.12558567767336e-10!GO:0009719;response to endogenous stimulus;6.96733068577867e-10!GO:0012501;programmed cell death;7.80948178050573e-10!GO:0006461;protein complex assembly;8.01893655602982e-10!GO:0008565;protein transporter activity;9.07203447229202e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.07203447229202e-10!GO:0004842;ubiquitin-protein ligase activity;9.07203447229202e-10!GO:0006164;purine nucleotide biosynthetic process;1.02730654724016e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.03064892221879e-09!GO:0003712;transcription cofactor activity;1.06395689771372e-09!GO:0051276;chromosome organization and biogenesis;1.13691631882442e-09!GO:0006915;apoptosis;1.15113073956516e-09!GO:0005694;chromosome;1.2749801462966e-09!GO:0019787;small conjugating protein ligase activity;1.85365941935637e-09!GO:0016607;nuclear speck;1.9357759935808e-09!GO:0016491;oxidoreductase activity;1.93619859347352e-09!GO:0009260;ribonucleotide biosynthetic process;2.15207932596222e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.49236690624122e-09!GO:0009060;aerobic respiration;2.7054692671212e-09!GO:0045333;cellular respiration;2.74462505021184e-09!GO:0009141;nucleoside triphosphate metabolic process;3.17116385131205e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.2294001694747e-09!GO:0051188;cofactor biosynthetic process;3.6847693303947e-09!GO:0000087;M phase of mitotic cell cycle;3.7043794047252e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.38493313465538e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.38493313465538e-09!GO:0043687;post-translational protein modification;5.46018740368941e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.46018740368941e-09!GO:0008026;ATP-dependent helicase activity;5.85850162614643e-09!GO:0008219;cell death;6.00973574034294e-09!GO:0016265;death;6.00973574034294e-09!GO:0007067;mitosis;6.355791011475e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.01299241071276e-09!GO:0030120;vesicle coat;1.22846569588335e-08!GO:0030662;coated vesicle membrane;1.22846569588335e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.26541302156361e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28244347173213e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.28244347173213e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28244347173213e-08!GO:0005768;endosome;1.29373312707066e-08!GO:0005643;nuclear pore;1.43822829932907e-08!GO:0043038;amino acid activation;1.44902420891478e-08!GO:0006418;tRNA aminoacylation for protein translation;1.44902420891478e-08!GO:0043039;tRNA aminoacylation;1.44902420891478e-08!GO:0051726;regulation of cell cycle;1.57444190339713e-08!GO:0000074;regulation of progression through cell cycle;1.68341164395385e-08!GO:0016881;acid-amino acid ligase activity;1.79391343204369e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.60463033974552e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.68676699849152e-08!GO:0046034;ATP metabolic process;3.08287060236548e-08!GO:0048475;coated membrane;3.09194735001517e-08!GO:0030117;membrane coat;3.09194735001517e-08!GO:0015986;ATP synthesis coupled proton transport;3.12889823693127e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.12889823693127e-08!GO:0065002;intracellular protein transport across a membrane;3.29266802936892e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.36865209897524e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.36865209897524e-08!GO:0051301;cell division;3.45508176955259e-08!GO:0006323;DNA packaging;3.45508176955259e-08!GO:0006403;RNA localization;3.46463205692017e-08!GO:0050657;nucleic acid transport;3.5055764517597e-08!GO:0051236;establishment of RNA localization;3.5055764517597e-08!GO:0050658;RNA transport;3.5055764517597e-08!GO:0019829;cation-transporting ATPase activity;3.59532463972433e-08!GO:0022403;cell cycle phase;3.78322971371394e-08!GO:0048523;negative regulation of cellular process;4.19665903872385e-08!GO:0017038;protein import;5.01141426554128e-08!GO:0044427;chromosomal part;5.01141426554128e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.03401483774157e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.03401483774157e-08!GO:0044431;Golgi apparatus part;6.16568027358521e-08!GO:0006099;tricarboxylic acid cycle;7.49399587687345e-08!GO:0046356;acetyl-CoA catabolic process;7.49399587687345e-08!GO:0006364;rRNA processing;8.12197558119312e-08!GO:0006366;transcription from RNA polymerase II promoter;9.11025535462626e-08!GO:0006260;DNA replication;9.73740980583873e-08!GO:0006091;generation of precursor metabolites and energy;1.06526343118971e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10470933369377e-07!GO:0051187;cofactor catabolic process;1.19248211063318e-07!GO:0016072;rRNA metabolic process;1.67626206172729e-07!GO:0009109;coenzyme catabolic process;1.728249322447e-07!GO:0003924;GTPase activity;1.77931489257126e-07!GO:0046930;pore complex;1.88045030549496e-07!GO:0005788;endoplasmic reticulum lumen;1.92969929150706e-07!GO:0050794;regulation of cellular process;2.07053349031604e-07!GO:0043566;structure-specific DNA binding;2.08717558891084e-07!GO:0051246;regulation of protein metabolic process;2.23879965594486e-07!GO:0044440;endosomal part;2.41073468873768e-07!GO:0010008;endosome membrane;2.41073468873768e-07!GO:0009108;coenzyme biosynthetic process;2.59600948598478e-07!GO:0006084;acetyl-CoA metabolic process;2.62593708941242e-07!GO:0065004;protein-DNA complex assembly;3.4453911064769e-07!GO:0006754;ATP biosynthetic process;3.98340090313878e-07!GO:0006753;nucleoside phosphate metabolic process;3.98340090313878e-07!GO:0015630;microtubule cytoskeleton;5.83190020983109e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.11779381789981e-07!GO:0009117;nucleotide metabolic process;7.78825858939769e-07!GO:0006916;anti-apoptosis;8.67567264074669e-07!GO:0003697;single-stranded DNA binding;9.88221419568364e-07!GO:0000279;M phase;1.12657997485619e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.33274215417392e-06!GO:0048519;negative regulation of biological process;1.33583546246761e-06!GO:0032446;protein modification by small protein conjugation;1.37717030357756e-06!GO:0016787;hydrolase activity;1.37783225815676e-06!GO:0000151;ubiquitin ligase complex;1.38728716359448e-06!GO:0016853;isomerase activity;1.39914564035335e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.41560527068045e-06!GO:0051028;mRNA transport;1.4253624197582e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.45204358011289e-06!GO:0016740;transferase activity;1.46306191407001e-06!GO:0007005;mitochondrion organization and biogenesis;1.4815335833667e-06!GO:0016859;cis-trans isomerase activity;1.73866459566026e-06!GO:0016567;protein ubiquitination;1.89379952194139e-06!GO:0045259;proton-transporting ATP synthase complex;2.20043647624865e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.27223954523682e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.28182959682174e-06!GO:0031988;membrane-bound vesicle;2.56650171005099e-06!GO:0003713;transcription coactivator activity;2.56873040372864e-06!GO:0006752;group transfer coenzyme metabolic process;2.80309873755096e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.90684389010067e-06!GO:0016779;nucleotidyltransferase activity;3.15883480190307e-06!GO:0008654;phospholipid biosynthetic process;3.19638650901327e-06!GO:0043069;negative regulation of programmed cell death;3.20396969906354e-06!GO:0005798;Golgi-associated vesicle;3.30067261424051e-06!GO:0000245;spliceosome assembly;3.42073381377348e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.47659421027173e-06!GO:0031252;leading edge;3.53430262258764e-06!GO:0043066;negative regulation of apoptosis;3.68143194788704e-06!GO:0042981;regulation of apoptosis;4.2960751081182e-06!GO:0006333;chromatin assembly or disassembly;4.5884546405134e-06!GO:0006613;cotranslational protein targeting to membrane;4.76710834109254e-06!GO:0016126;sterol biosynthetic process;4.78866086066421e-06!GO:0051170;nuclear import;4.87708258051956e-06!GO:0000139;Golgi membrane;5.16021775640263e-06!GO:0005813;centrosome;5.4311566927846e-06!GO:0043067;regulation of programmed cell death;5.7699988966322e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.51259780429608e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.57748380568107e-06!GO:0003724;RNA helicase activity;7.47569735811057e-06!GO:0005773;vacuole;8.52605684880015e-06!GO:0005667;transcription factor complex;9.35666186322889e-06!GO:0031982;vesicle;1.08595045320233e-05!GO:0006606;protein import into nucleus;1.24025114855018e-05!GO:0031410;cytoplasmic vesicle;1.2936731815573e-05!GO:0004298;threonine endopeptidase activity;1.33904435633984e-05!GO:0005770;late endosome;1.4461989060292e-05!GO:0005762;mitochondrial large ribosomal subunit;1.45341382587161e-05!GO:0000315;organellar large ribosomal subunit;1.45341382587161e-05!GO:0016568;chromatin modification;1.55635530274845e-05!GO:0019867;outer membrane;1.63822149634705e-05!GO:0005815;microtubule organizing center;1.8407212071894e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.89047335459314e-05!GO:0000785;chromatin;1.93636380256298e-05!GO:0031968;organelle outer membrane;2.2824706984129e-05!GO:0005525;GTP binding;2.33645809063022e-05!GO:0000323;lytic vacuole;2.79615959487888e-05!GO:0005764;lysosome;2.79615959487888e-05!GO:0045786;negative regulation of progression through cell cycle;3.11433315421801e-05!GO:0005769;early endosome;3.3277043261545e-05!GO:0016563;transcription activator activity;3.42330869847061e-05!GO:0030867;rough endoplasmic reticulum membrane;3.6078958241569e-05!GO:0019899;enzyme binding;3.64372977435368e-05!GO:0006793;phosphorus metabolic process;3.64872964277414e-05!GO:0006796;phosphate metabolic process;3.64872964277414e-05!GO:0008610;lipid biosynthetic process;3.75143582145306e-05!GO:0043021;ribonucleoprotein binding;3.85252592071761e-05!GO:0030133;transport vesicle;3.9183046773019e-05!GO:0019843;rRNA binding;4.35305504292362e-05!GO:0043623;cellular protein complex assembly;5.33757805693551e-05!GO:0006695;cholesterol biosynthetic process;5.42485246049493e-05!GO:0031324;negative regulation of cellular metabolic process;5.48339183644035e-05!GO:0045454;cell redox homeostasis;5.78236727590731e-05!GO:0050789;regulation of biological process;6.16828997829365e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.0281230825911e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;7.6516123021563e-05!GO:0051427;hormone receptor binding;0.000114351607330539!GO:0005905;coated pit;0.000119622122656696!GO:0050662;coenzyme binding;0.000120539259435423!GO:0016564;transcription repressor activity;0.000143147205518303!GO:0005048;signal sequence binding;0.000151387039495242!GO:0006612;protein targeting to membrane;0.000152397998548256!GO:0006334;nucleosome assembly;0.000162002260935435!GO:0005741;mitochondrial outer membrane;0.0001643148848687!GO:0000314;organellar small ribosomal subunit;0.000178236796818215!GO:0005763;mitochondrial small ribosomal subunit;0.000178236796818215!GO:0030036;actin cytoskeleton organization and biogenesis;0.000180105601864344!GO:0032561;guanyl ribonucleotide binding;0.000184209699574802!GO:0019001;guanyl nucleotide binding;0.000184209699574802!GO:0009892;negative regulation of metabolic process;0.00018762957728027!GO:0016310;phosphorylation;0.000230840838469965!GO:0035257;nuclear hormone receptor binding;0.000235816652033896!GO:0046474;glycerophospholipid biosynthetic process;0.000237085833964351!GO:0005819;spindle;0.000243131468943525!GO:0003899;DNA-directed RNA polymerase activity;0.000247925024303021!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00030134188413997!GO:0030663;COPI coated vesicle membrane;0.000309986766197725!GO:0030126;COPI vesicle coat;0.000309986766197725!GO:0005885;Arp2/3 protein complex;0.000311531011587319!GO:0033116;ER-Golgi intermediate compartment membrane;0.000313540612989081!GO:0051789;response to protein stimulus;0.000345726695584268!GO:0006986;response to unfolded protein;0.000345726695584268!GO:0008186;RNA-dependent ATPase activity;0.000367849442908495!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000375244206192016!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000375244206192016!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000381146212452338!GO:0016481;negative regulation of transcription;0.000394486344393318!GO:0008250;oligosaccharyl transferase complex;0.000418924780211165!GO:0019752;carboxylic acid metabolic process;0.000449881785784401!GO:0031497;chromatin assembly;0.000473419089262365!GO:0009165;nucleotide biosynthetic process;0.000485023791977851!GO:0006082;organic acid metabolic process;0.000504783634382682!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0005103967634031!GO:0051168;nuclear export;0.000512737164113701!GO:0003729;mRNA binding;0.000534170905920462!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000536012094677528!GO:0046467;membrane lipid biosynthetic process;0.000544326705711895!GO:0004576;oligosaccharyl transferase activity;0.000549319545533025!GO:0007010;cytoskeleton organization and biogenesis;0.000591024386946561!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000651603296625249!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000653590545124472!GO:0051252;regulation of RNA metabolic process;0.000653590545124472!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000671373166709195!GO:0006414;translational elongation;0.00073518688413084!GO:0048037;cofactor binding;0.000813401000504466!GO:0051920;peroxiredoxin activity;0.000866794875584532!GO:0003690;double-stranded DNA binding;0.000866955584736032!GO:0045045;secretory pathway;0.000912632573158438!GO:0003714;transcription corepressor activity;0.000952246259527191!GO:0030029;actin filament-based process;0.000971823907337583!GO:0007243;protein kinase cascade;0.000989209489240484!GO:0046489;phosphoinositide biosynthetic process;0.00104731403724269!GO:0016044;membrane organization and biogenesis;0.00105192221057155!GO:0004004;ATP-dependent RNA helicase activity;0.00105806186215998!GO:0005791;rough endoplasmic reticulum;0.00107810528081819!GO:0030137;COPI-coated vesicle;0.00108760999787559!GO:0019222;regulation of metabolic process;0.00111127997199678!GO:0008047;enzyme activator activity;0.00111280904290903!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00111876937324384!GO:0000059;protein import into nucleus, docking;0.00121797665573917!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00123026020628482!GO:0015399;primary active transmembrane transporter activity;0.00123026020628482!GO:0043284;biopolymer biosynthetic process;0.00123897770599819!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00127015163560187!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00127015163560187!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00127015163560187!GO:0030132;clathrin coat of coated pit;0.00129117965901561!GO:0006891;intra-Golgi vesicle-mediated transport;0.00134250739996482!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00135081415569236!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00137502713551867!GO:0051287;NAD binding;0.00139749806159417!GO:0031072;heat shock protein binding;0.00140382984615362!GO:0048500;signal recognition particle;0.00142070892366322!GO:0018196;peptidyl-asparagine modification;0.00150033302744906!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00150033302744906!GO:0006402;mRNA catabolic process;0.00153897674300045!GO:0051329;interphase of mitotic cell cycle;0.00161316380700079!GO:0048471;perinuclear region of cytoplasm;0.00171048692124555!GO:0008361;regulation of cell size;0.00171272741232844!GO:0030658;transport vesicle membrane;0.00173430270908078!GO:0016363;nuclear matrix;0.00173615180783886!GO:0043681;protein import into mitochondrion;0.0017998606388584!GO:0030118;clathrin coat;0.0018238890306574!GO:0051540;metal cluster binding;0.00193776191519398!GO:0051536;iron-sulfur cluster binding;0.00193776191519398!GO:0042802;identical protein binding;0.00194616706117477!GO:0016049;cell growth;0.00210095459755336!GO:0030134;ER to Golgi transport vesicle;0.00210565342695899!GO:0030027;lamellipodium;0.00216189490956317!GO:0015992;proton transport;0.00231265106969702!GO:0005096;GTPase activator activity;0.0023373068049541!GO:0004177;aminopeptidase activity;0.00233930124307544!GO:0006383;transcription from RNA polymerase III promoter;0.00236553228125558!GO:0046483;heterocycle metabolic process;0.00242036288626016!GO:0006626;protein targeting to mitochondrion;0.00245177958546731!GO:0006118;electron transport;0.00259990730923544!GO:0006818;hydrogen transport;0.00261899682356131!GO:0030880;RNA polymerase complex;0.00262659489297216!GO:0033673;negative regulation of kinase activity;0.00265535829279642!GO:0006469;negative regulation of protein kinase activity;0.00265535829279642!GO:0030127;COPII vesicle coat;0.00278138513803093!GO:0012507;ER to Golgi transport vesicle membrane;0.00278138513803093!GO:0007051;spindle organization and biogenesis;0.00280498285518385!GO:0000075;cell cycle checkpoint;0.00286321779622455!GO:0030521;androgen receptor signaling pathway;0.002871266663325!GO:0006650;glycerophospholipid metabolic process;0.00291111276996081!GO:0008180;signalosome;0.00297738597217246!GO:0032984;macromolecular complex disassembly;0.00304615864517763!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00304615864517763!GO:0045047;protein targeting to ER;0.00304615864517763!GO:0043488;regulation of mRNA stability;0.00306782505489218!GO:0043487;regulation of RNA stability;0.00306782505489218!GO:0006289;nucleotide-excision repair;0.00317749437068183!GO:0044262;cellular carbohydrate metabolic process;0.00319100375903418!GO:0044452;nucleolar part;0.00325128349029446!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00328323236595633!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00329633670491065!GO:0008033;tRNA processing;0.00333021158727626!GO:0006497;protein amino acid lipidation;0.00353656191312788!GO:0006261;DNA-dependent DNA replication;0.00357253120240773!GO:0051128;regulation of cellular component organization and biogenesis;0.00361476950461533!GO:0008312;7S RNA binding;0.00372936439488845!GO:0048522;positive regulation of cellular process;0.00378768276099067!GO:0006839;mitochondrial transport;0.00379301779304869!GO:0051539;4 iron, 4 sulfur cluster binding;0.00391551771376414!GO:0051348;negative regulation of transferase activity;0.00392882548172687!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00399394763482964!GO:0006352;transcription initiation;0.00405939489487827!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00406757157518296!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00406757157518296!GO:0035258;steroid hormone receptor binding;0.00417044379419256!GO:0022890;inorganic cation transmembrane transporter activity;0.00429879165772843!GO:0000049;tRNA binding;0.00433999077313926!GO:0051325;interphase;0.00435387082665559!GO:0001726;ruffle;0.00467575854501706!GO:0016408;C-acyltransferase activity;0.00474877350943517!GO:0001558;regulation of cell growth;0.00485401063137544!GO:0030660;Golgi-associated vesicle membrane;0.00498736675878003!GO:0007006;mitochondrial membrane organization and biogenesis;0.00506826381344946!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0051783536838891!GO:0015002;heme-copper terminal oxidase activity;0.0051783536838891!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0051783536838891!GO:0004129;cytochrome-c oxidase activity;0.0051783536838891!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0051783536838891!GO:0000428;DNA-directed RNA polymerase complex;0.0051783536838891!GO:0016251;general RNA polymerase II transcription factor activity;0.00519790098877551!GO:0017166;vinculin binding;0.00520353849844512!GO:0008168;methyltransferase activity;0.00523571455511429!GO:0006401;RNA catabolic process;0.00531119972006297!GO:0051087;chaperone binding;0.00547474979429379!GO:0031901;early endosome membrane;0.00563246407513824!GO:0043492;ATPase activity, coupled to movement of substances;0.00564824028712478!GO:0008139;nuclear localization sequence binding;0.00565536918446133!GO:0005100;Rho GTPase activator activity;0.0059066925888165!GO:0008092;cytoskeletal protein binding;0.00598250070870789!GO:0007264;small GTPase mediated signal transduction;0.00605925515497031!GO:0003711;transcription elongation regulator activity;0.00609033209808967!GO:0003746;translation elongation factor activity;0.0061782414419979!GO:0007050;cell cycle arrest;0.00626667124394855!GO:0031902;late endosome membrane;0.006275455584735!GO:0043241;protein complex disassembly;0.00631459787012039!GO:0016741;transferase activity, transferring one-carbon groups;0.00632550411832264!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00642449107692068!GO:0000339;RNA cap binding;0.00646111075000958!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00673241790412731!GO:0003682;chromatin binding;0.0067766144316996!GO:0006302;double-strand break repair;0.00682329710427772!GO:0042158;lipoprotein biosynthetic process;0.00727837915564298!GO:0008154;actin polymerization and/or depolymerization;0.00732046483097864!GO:0030119;AP-type membrane coat adaptor complex;0.00732046483097864!GO:0065009;regulation of a molecular function;0.0074187439742355!GO:0005869;dynactin complex;0.00756803773520617!GO:0030041;actin filament polymerization;0.0076368503250715!GO:0000776;kinetochore;0.00770987533188554!GO:0005774;vacuolar membrane;0.00772681716457956!GO:0030518;steroid hormone receptor signaling pathway;0.00780678188407396!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0080594540210434!GO:0005874;microtubule;0.00807341630934306!GO:0048487;beta-tubulin binding;0.00819378141993576!GO:0043022;ribosome binding;0.0083159877234303!GO:0030176;integral to endoplasmic reticulum membrane;0.00838661049336956!GO:0006520;amino acid metabolic process;0.00852766996985529!GO:0043624;cellular protein complex disassembly;0.00861636677261077!GO:0031625;ubiquitin protein ligase binding;0.00872355601930666!GO:0003684;damaged DNA binding;0.0087796917211068!GO:0065007;biological regulation;0.0087796917211068!GO:0008632;apoptotic program;0.00882035385503357!GO:0030384;phosphoinositide metabolic process;0.0092175618399859!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00930778293159303!GO:0009967;positive regulation of signal transduction;0.00958520676152074!GO:0000209;protein polyubiquitination;0.00971108743981883!GO:0006595;polyamine metabolic process;0.00999885919406667!GO:0003678;DNA helicase activity;0.0100276069663627!GO:0045893;positive regulation of transcription, DNA-dependent;0.0101873213003225!GO:0015631;tubulin binding;0.0102176677126769!GO:0016197;endosome transport;0.0102702839147882!GO:0030659;cytoplasmic vesicle membrane;0.0103823010148402!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0105934664273289!GO:0006310;DNA recombination;0.0112200748913!GO:0000775;chromosome, pericentric region;0.0112461011393281!GO:0006778;porphyrin metabolic process;0.0112461011393281!GO:0033013;tetrapyrrole metabolic process;0.0112461011393281!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0114481120584607!GO:0030131;clathrin adaptor complex;0.011675510461884!GO:0050681;androgen receptor binding;0.0117082397079888!GO:0006740;NADPH regeneration;0.0117082397079888!GO:0006098;pentose-phosphate shunt;0.0117082397079888!GO:0005684;U2-dependent spliceosome;0.0117235451917443!GO:0006405;RNA export from nucleus;0.0118540656545498!GO:0006506;GPI anchor biosynthetic process;0.0120465921344842!GO:0005832;chaperonin-containing T-complex;0.0120545048421948!GO:0032940;secretion by cell;0.012347152638401!GO:0051052;regulation of DNA metabolic process;0.0123920157103063!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0123982992401027!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130862288616596!GO:0006979;response to oxidative stress;0.0130981059559314!GO:0030125;clathrin vesicle coat;0.0134135180011774!GO:0030665;clathrin coated vesicle membrane;0.0134135180011774!GO:0045941;positive regulation of transcription;0.0136660477002456!GO:0031124;mRNA 3'-end processing;0.0136660477002456!GO:0006607;NLS-bearing substrate import into nucleus;0.0138088486616293!GO:0008234;cysteine-type peptidase activity;0.0138336665674062!GO:0005669;transcription factor TFIID complex;0.0140178424991659!GO:0031529;ruffle organization and biogenesis;0.0144446388893545!GO:0006505;GPI anchor metabolic process;0.0146838439078936!GO:0022406;membrane docking;0.0155659696771621!GO:0048278;vesicle docking;0.0155659696771621!GO:0007052;mitotic spindle organization and biogenesis;0.0163650897303419!GO:0007034;vacuolar transport;0.0164514376287176!GO:0016125;sterol metabolic process;0.016954457248108!GO:0006950;response to stress;0.0174693947296208!GO:0006892;post-Golgi vesicle-mediated transport;0.0177518079025778!GO:0044437;vacuolar part;0.0179985480639682!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0181767477150023!GO:0033043;regulation of organelle organization and biogenesis;0.0181767477150023!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0182415643867806!GO:0006769;nicotinamide metabolic process;0.0183372886092732!GO:0000096;sulfur amino acid metabolic process;0.0186311504726069!GO:0000082;G1/S transition of mitotic cell cycle;0.0188433265208711!GO:0005765;lysosomal membrane;0.0189810656864083!GO:0006904;vesicle docking during exocytosis;0.019258102536253!GO:0005099;Ras GTPase activator activity;0.0193996625800632!GO:0006611;protein export from nucleus;0.019540410879638!GO:0006509;membrane protein ectodomain proteolysis;0.0200827284709297!GO:0033619;membrane protein proteolysis;0.0200827284709297!GO:0006733;oxidoreduction coenzyme metabolic process;0.020395276908585!GO:0005657;replication fork;0.020395276908585!GO:0044433;cytoplasmic vesicle part;0.0209500877745891!GO:0016407;acetyltransferase activity;0.0210227722659742!GO:0022408;negative regulation of cell-cell adhesion;0.0210227722659742!GO:0007021;tubulin folding;0.0216054111692756!GO:0007088;regulation of mitosis;0.0217103474764831!GO:0005862;muscle thin filament tropomyosin;0.022106209177824!GO:0016272;prefoldin complex;0.0221974984766009!GO:0048144;fibroblast proliferation;0.0223635830284632!GO:0048145;regulation of fibroblast proliferation;0.0223635830284632!GO:0006767;water-soluble vitamin metabolic process;0.0228605352805866!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0229366907001617!GO:0047485;protein N-terminus binding;0.0229663321782468!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0229663321782468!GO:0033559;unsaturated fatty acid metabolic process;0.0230709633103932!GO:0006636;unsaturated fatty acid biosynthetic process;0.0230709633103932!GO:0016584;nucleosome positioning;0.0233366461460257!GO:0022411;cellular component disassembly;0.0234266030629388!GO:0006779;porphyrin biosynthetic process;0.023698288582735!GO:0033014;tetrapyrrole biosynthetic process;0.023698288582735!GO:0008299;isoprenoid biosynthetic process;0.0237835543234115!GO:0048146;positive regulation of fibroblast proliferation;0.0241305428760826!GO:0005637;nuclear inner membrane;0.0246638859532193!GO:0044255;cellular lipid metabolic process;0.0261278958043985!GO:0005801;cis-Golgi network;0.026380432769215!GO:0009112;nucleobase metabolic process;0.0269253926517219!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0272963049504221!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0272963049504221!GO:0004674;protein serine/threonine kinase activity;0.027693457272748!GO:0030032;lamellipodium biogenesis;0.0277099405137736!GO:0022415;viral reproductive process;0.0277099405137736!GO:0035035;histone acetyltransferase binding;0.0277099405137736!GO:0050811;GABA receptor binding;0.0277099405137736!GO:0006643;membrane lipid metabolic process;0.0277099405137736!GO:0008094;DNA-dependent ATPase activity;0.0283920096062622!GO:0004527;exonuclease activity;0.0285047954049118!GO:0006739;NADP metabolic process;0.0285047954049118!GO:0006635;fatty acid beta-oxidation;0.0286305709163504!GO:0008022;protein C-terminus binding;0.0286516161948983!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0288801377605277!GO:0043130;ubiquitin binding;0.0293898874376739!GO:0032182;small conjugating protein binding;0.0293898874376739!GO:0001952;regulation of cell-matrix adhesion;0.0297928650532011!GO:0006376;mRNA splice site selection;0.0298185700802339!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0298185700802339!GO:0007093;mitotic cell cycle checkpoint;0.0298993309588139!GO:0016860;intramolecular oxidoreductase activity;0.0299573238093797!GO:0008097;5S rRNA binding;0.0299573238093797!GO:0042168;heme metabolic process;0.0300042493282865!GO:0012506;vesicle membrane;0.0300282081398262!GO:0030522;intracellular receptor-mediated signaling pathway;0.0303546382275087!GO:0031371;ubiquitin conjugating enzyme complex;0.0306408815544946!GO:0008652;amino acid biosynthetic process;0.0313058634941955!GO:0016790;thiolester hydrolase activity;0.0315015936103808!GO:0030833;regulation of actin filament polymerization;0.0316647238564263!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0319825719129773!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0322585056949042!GO:0009303;rRNA transcription;0.0323750321906013!GO:0030145;manganese ion binding;0.0328429296292977!GO:0006378;mRNA polyadenylation;0.0328454410915461!GO:0051537;2 iron, 2 sulfur cluster binding;0.0337427653820594!GO:0045334;clathrin-coated endocytic vesicle;0.0340779289068455!GO:0006984;ER-nuclear signaling pathway;0.0341747922033006!GO:0007040;lysosome organization and biogenesis;0.0346545702640754!GO:0006897;endocytosis;0.034829262667603!GO:0010324;membrane invagination;0.034829262667603!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0356287902589353!GO:0031123;RNA 3'-end processing;0.0357557576602519!GO:0006354;RNA elongation;0.0358541806204936!GO:0003756;protein disulfide isomerase activity;0.0366586037389116!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366586037389116!GO:0006007;glucose catabolic process;0.0368238491859978!GO:0007030;Golgi organization and biogenesis;0.0368238491859978!GO:0006644;phospholipid metabolic process;0.0369851523861294!GO:0032200;telomere organization and biogenesis;0.0369851523861294!GO:0000723;telomere maintenance;0.0369851523861294!GO:0001953;negative regulation of cell-matrix adhesion;0.037997685271705!GO:0008064;regulation of actin polymerization and/or depolymerization;0.037997685271705!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0382283550848853!GO:0005876;spindle microtubule;0.0382283550848853!GO:0030508;thiol-disulfide exchange intermediate activity;0.0382432213464263!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0385194497464742!GO:0031323;regulation of cellular metabolic process;0.0385519009550569!GO:0005784;translocon complex;0.0392531704856959!GO:0006066;alcohol metabolic process;0.0392531704856959!GO:0006144;purine base metabolic process;0.039622071021645!GO:0009081;branched chain family amino acid metabolic process;0.039622071021645!GO:0048468;cell development;0.0398649970565045!GO:0006220;pyrimidine nucleotide metabolic process;0.0401424833660741!GO:0046128;purine ribonucleoside metabolic process;0.0402710726572647!GO:0042278;purine nucleoside metabolic process;0.0402710726572647!GO:0007033;vacuole organization and biogenesis;0.0404213324384845!GO:0019206;nucleoside kinase activity;0.0404363021269506!GO:0009116;nucleoside metabolic process;0.0404550797295741!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0409675443183872!GO:0009225;nucleotide-sugar metabolic process;0.0409675443183872!GO:0032508;DNA duplex unwinding;0.04159096548183!GO:0032392;DNA geometric change;0.04159096548183!GO:0030911;TPR domain binding;0.0418131578843643!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0421310490659943!GO:0051336;regulation of hydrolase activity;0.0430849658426993!GO:0007569;cell aging;0.0430849658426993!GO:0050790;regulation of catalytic activity;0.0435994099242233!GO:0040008;regulation of growth;0.0438932210672398!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0440132650405199!GO:0009451;RNA modification;0.0444292823401312!GO:0007041;lysosomal transport;0.0448352502348698!GO:0008538;proteasome activator activity;0.0449974650826541!GO:0019783;small conjugating protein-specific protease activity;0.0453868138097691!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0454422718955141!GO:0000786;nucleosome;0.0459458001792874!GO:0000781;chromosome, telomeric region;0.0465008413752856!GO:0016615;malate dehydrogenase activity;0.0465594823236456!GO:0004843;ubiquitin-specific protease activity;0.0465594823236456!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0475411306382589!GO:0015036;disulfide oxidoreductase activity;0.0489192637628437!GO:0004518;nuclease activity;0.0490130333481043!GO:0043086;negative regulation of catalytic activity;0.0492060179327311!GO:0031461;cullin-RING ubiquitin ligase complex;0.0492060179327311!GO:0030128;clathrin coat of endocytic vesicle;0.0492060179327311!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0492060179327311!GO:0030122;AP-2 adaptor complex;0.0492060179327311!GO:0019362;pyridine nucleotide metabolic process;0.0494500931339753!GO:0017134;fibroblast growth factor binding;0.0495061038080026!GO:0006338;chromatin remodeling;0.0498905100713382 | |||
|sample_id=11237 | |sample_id=11237 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=ZNF238:1.82452905274;PDX1:1.38493970686;NKX2-2,8:1.11781821258;PAX4:1.0377719361;FOX{I1,J2}:0.901412995684;MYBL2:0.871118000345;GFI1B:0.784686028166;NR3C1:0.771699198438;NFATC1..3:0.733602816823;NKX6-1,2:0.724122787906;TOPORS:0.667467259871;HES1:0.662192593757;AIRE:0.656377740901;EN1,2:0.635054060894;TFAP4:0.6221111426;ALX4:0.616371404769;LHX3,4:0.608516965193;TGIF1:0.574907799624;NFIX:0.566064340136;EBF1:0.557054708747;GZF1:0.529612752876;TLX1..3_NFIC{dimer}:0.512963650539;AR:0.510464212364;MZF1:0.493259700022;FOXP1:0.488664643624;TEAD1:0.482089371374;FOXD3:0.481233872652;NKX3-1:0.475290100043;TBX4,5:0.474968792484;GTF2A1,2:0.461929863811;TP53:0.456599696002;PRRX1,2:0.452851649552;SOX17:0.447939919318;NFE2L2:0.446986017598;ADNP_IRX_SIX_ZHX:0.43887940318;bHLH_family:0.414483418092;YY1:0.414478212768;HOX{A5,B5}:0.410514189067;TAL1_TCF{3,4,12}:0.40915794522;STAT1,3:0.40526484751;PITX1..3:0.400344310053;HOX{A4,D4}:0.394509881909;HAND1,2:0.39442252054;FOX{F1,F2,J1}:0.376449250292;MTF1:0.372549246607;TEF:0.363865119509;FOXA2:0.357854324189;XBP1:0.355684747065;GTF2I:0.344278579286;BACH2:0.342186113285;AHR_ARNT_ARNT2:0.340002433332;GFI1:0.339623955178;FOXO1,3,4:0.338079863476;TFCP2:0.336932034426;STAT5{A,B}:0.333719022484;ELK1,4_GABP{A,B1}:0.332848805513;CRX:0.331797015745;NR1H4:0.33001820797;NRF1:0.31481646574;POU3F1..4:0.287605371767;ZNF143:0.285353842558;PAX5:0.285158593602;ZBTB16:0.276674634701;CEBPA,B_DDIT3:0.271828942712;NFE2:0.259594590149;HSF1,2:0.246894718206;NHLH1,2:0.218210512654;ZBTB6:0.214949421794;HMGA1,2:0.201237300737;SP1:0.199939211603;MAZ:0.194366681238;RXR{A,B,G}:0.172465732207;ZIC1..3:0.16444332723;RBPJ:0.156227596829;POU1F1:0.142186580155;MYB:0.132408405256;FOS_FOS{B,L1}_JUN{B,D}:0.120028062115;ONECUT1,2:0.115656636822;ARID5B:0.106953246931;HLF:0.0854081594227;HOX{A6,A7,B6,B7}:0.0725914134085;PRDM1:0.0678751555981;SRF:0.0589863532205;HNF4A_NR2F1,2:0.0557748505331;SPZ1:0.0427174255459;ATF6:0.0426743552106;ZFP161:0.0418199278245;ZNF423:0.0392897271521;NFY{A,B,C}:0.0308513501606;TFDP1:0.0298375917422;DBP:0.0255391073522;PAX6:0.0198449234899;TFAP2{A,C}:0.0175905345411;KLF4:0.0172161509729;DMAP1_NCOR{1,2}_SMARC:0.0157747420373;PATZ1:0.0152608770879;UFEwm:0.0150182500811;ELF1,2,4:0.0129503005229;NKX3-2:0.011058427107;HBP1_HMGB_SSRP1_UBTF:0.00966320107679;MYFfamily:0.00889843739999;NKX2-1,4:0.00389439583444;FOSL2:-0.00297601766667;PAX8:-0.00320466093674;FOXL1:-0.0131777851076;ESR1:-0.0134936759573;BPTF:-0.0282606229554;SOX5:-0.0389500347972;MAFB:-0.0440169484117;HNF1A:-0.0455007490286;NANOG{mouse}:-0.0622208019542;EVI1:-0.0633331343672;NANOG:-0.0638722492461;LEF1_TCF7_TCF7L1,2:-0.0884141337883;XCPE1{core}:-0.0907310140765;POU6F1:-0.0949154481366;T:-0.0985151078271;HIC1:-0.12248950569;IRF1,2:-0.125432180322;PAX3,7:-0.134238598085;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.136643983573;RFX1:-0.137300164553;HOXA9_MEIS1:-0.145814189146;ESRRA:-0.149794915422;FOXN1:-0.167329757226;EGR1..3:-0.181673305672;CDC5L:-0.18418364581;SREBF1,2:-0.184986028111;CREB1:-0.191621666065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.197026555961;FOXQ1:-0.20977250049;E2F1..5:-0.234281030631;IRF7:-0.237839562538;MEF2{A,B,C,D}:-0.248917766983;NKX2-3_NKX2-5:-0.25511854221;PPARG:-0.259153263221;NFE2L1:-0.272967860718;NFIL3:-0.279170153007;FOX{D1,D2}:-0.299631014372;GATA4:-0.30155538846;MED-1{core}:-0.301881769561;MTE{core}:-0.320470839461;STAT2,4,6:-0.331808808969;GLI1..3:-0.333890115683;RFX2..5_RFXANK_RFXAP:-0.335152153868;ETS1,2:-0.344297999895;CUX2:-0.345341635402;TLX2:-0.345674457071;TBP:-0.365369880391;IKZF1:-0.380885113879;SPIB:-0.38796017833;RUNX1..3:-0.394152229304;GATA6:-0.406730917899;ALX1:-0.412165858347;GCM1,2:-0.426311779584;ATF5_CREB3:-0.435276253374;TFAP2B:-0.438643856085;SPI1:-0.446967591669;REST:-0.45036453797;PAX1,9:-0.453760524521;ZNF384:-0.455351469553;ZNF148:-0.460708919629;PBX1:-0.46654152161;NFKB1_REL_RELA:-0.487600667934;FOXP3:-0.505175765124;RREB1:-0.506504301864;HIF1A:-0.539611259227;MYOD1:-0.554081190018;HMX1:-0.565297340351;FOXM1:-0.579499126968;ATF4:-0.583591454598;PAX2:-0.591745028035;POU5F1:-0.646516914516;RORA:-0.669230018112;SOX2:-0.670507638087;SMAD1..7,9:-0.684117834358;CDX1,2,4:-0.688434241691;SOX{8,9,10}:-0.704340908181;SNAI1..3:-0.718025762546;BREu{core}:-0.721800631537;LMO2:-0.722437205614;JUN:-0.73002908641;OCT4_SOX2{dimer}:-0.746520950846;IKZF2:-0.809617697064;NR6A1:-0.819268153267;ZEB1:-0.831832727761;ATF2:-0.841870371206;NR5A1,2:-0.880988124991;POU2F1..3:-0.912024020943;VSX1,2:-0.929505211375;RXRA_VDR{dimer}:-0.987050381308;EP300:-1.42890335333 | |top_motifs=ZNF238:1.82452905274;PDX1:1.38493970686;NKX2-2,8:1.11781821258;PAX4:1.0377719361;FOX{I1,J2}:0.901412995684;MYBL2:0.871118000345;GFI1B:0.784686028166;NR3C1:0.771699198438;NFATC1..3:0.733602816823;NKX6-1,2:0.724122787906;TOPORS:0.667467259871;HES1:0.662192593757;AIRE:0.656377740901;EN1,2:0.635054060894;TFAP4:0.6221111426;ALX4:0.616371404769;LHX3,4:0.608516965193;TGIF1:0.574907799624;NFIX:0.566064340136;EBF1:0.557054708747;GZF1:0.529612752876;TLX1..3_NFIC{dimer}:0.512963650539;AR:0.510464212364;MZF1:0.493259700022;FOXP1:0.488664643624;TEAD1:0.482089371374;FOXD3:0.481233872652;NKX3-1:0.475290100043;TBX4,5:0.474968792484;GTF2A1,2:0.461929863811;TP53:0.456599696002;PRRX1,2:0.452851649552;SOX17:0.447939919318;NFE2L2:0.446986017598;ADNP_IRX_SIX_ZHX:0.43887940318;bHLH_family:0.414483418092;YY1:0.414478212768;HOX{A5,B5}:0.410514189067;TAL1_TCF{3,4,12}:0.40915794522;STAT1,3:0.40526484751;PITX1..3:0.400344310053;HOX{A4,D4}:0.394509881909;HAND1,2:0.39442252054;FOX{F1,F2,J1}:0.376449250292;MTF1:0.372549246607;TEF:0.363865119509;FOXA2:0.357854324189;XBP1:0.355684747065;GTF2I:0.344278579286;BACH2:0.342186113285;AHR_ARNT_ARNT2:0.340002433332;GFI1:0.339623955178;FOXO1,3,4:0.338079863476;TFCP2:0.336932034426;STAT5{A,B}:0.333719022484;ELK1,4_GABP{A,B1}:0.332848805513;CRX:0.331797015745;NR1H4:0.33001820797;NRF1:0.31481646574;POU3F1..4:0.287605371767;ZNF143:0.285353842558;PAX5:0.285158593602;ZBTB16:0.276674634701;CEBPA,B_DDIT3:0.271828942712;NFE2:0.259594590149;HSF1,2:0.246894718206;NHLH1,2:0.218210512654;ZBTB6:0.214949421794;HMGA1,2:0.201237300737;SP1:0.199939211603;MAZ:0.194366681238;RXR{A,B,G}:0.172465732207;ZIC1..3:0.16444332723;RBPJ:0.156227596829;POU1F1:0.142186580155;MYB:0.132408405256;FOS_FOS{B,L1}_JUN{B,D}:0.120028062115;ONECUT1,2:0.115656636822;ARID5B:0.106953246931;HLF:0.0854081594227;HOX{A6,A7,B6,B7}:0.0725914134085;PRDM1:0.0678751555981;SRF:0.0589863532205;HNF4A_NR2F1,2:0.0557748505331;SPZ1:0.0427174255459;ATF6:0.0426743552106;ZFP161:0.0418199278245;ZNF423:0.0392897271521;NFY{A,B,C}:0.0308513501606;TFDP1:0.0298375917422;DBP:0.0255391073522;PAX6:0.0198449234899;TFAP2{A,C}:0.0175905345411;KLF4:0.0172161509729;DMAP1_NCOR{1,2}_SMARC:0.0157747420373;PATZ1:0.0152608770879;UFEwm:0.0150182500811;ELF1,2,4:0.0129503005229;NKX3-2:0.011058427107;HBP1_HMGB_SSRP1_UBTF:0.00966320107679;MYFfamily:0.00889843739999;NKX2-1,4:0.00389439583444;FOSL2:-0.00297601766667;PAX8:-0.00320466093674;FOXL1:-0.0131777851076;ESR1:-0.0134936759573;BPTF:-0.0282606229554;SOX5:-0.0389500347972;MAFB:-0.0440169484117;HNF1A:-0.0455007490286;NANOG{mouse}:-0.0622208019542;EVI1:-0.0633331343672;NANOG:-0.0638722492461;LEF1_TCF7_TCF7L1,2:-0.0884141337883;XCPE1{core}:-0.0907310140765;POU6F1:-0.0949154481366;T:-0.0985151078271;HIC1:-0.12248950569;IRF1,2:-0.125432180322;PAX3,7:-0.134238598085;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.136643983573;RFX1:-0.137300164553;HOXA9_MEIS1:-0.145814189146;ESRRA:-0.149794915422;FOXN1:-0.167329757226;EGR1..3:-0.181673305672;CDC5L:-0.18418364581;SREBF1,2:-0.184986028111;CREB1:-0.191621666065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.197026555961;FOXQ1:-0.20977250049;E2F1..5:-0.234281030631;IRF7:-0.237839562538;MEF2{A,B,C,D}:-0.248917766983;NKX2-3_NKX2-5:-0.25511854221;PPARG:-0.259153263221;NFE2L1:-0.272967860718;NFIL3:-0.279170153007;FOX{D1,D2}:-0.299631014372;GATA4:-0.30155538846;MED-1{core}:-0.301881769561;MTE{core}:-0.320470839461;STAT2,4,6:-0.331808808969;GLI1..3:-0.333890115683;RFX2..5_RFXANK_RFXAP:-0.335152153868;ETS1,2:-0.344297999895;CUX2:-0.345341635402;TLX2:-0.345674457071;TBP:-0.365369880391;IKZF1:-0.380885113879;SPIB:-0.38796017833;RUNX1..3:-0.394152229304;GATA6:-0.406730917899;ALX1:-0.412165858347;GCM1,2:-0.426311779584;ATF5_CREB3:-0.435276253374;TFAP2B:-0.438643856085;SPI1:-0.446967591669;REST:-0.45036453797;PAX1,9:-0.453760524521;ZNF384:-0.455351469553;ZNF148:-0.460708919629;PBX1:-0.46654152161;NFKB1_REL_RELA:-0.487600667934;FOXP3:-0.505175765124;RREB1:-0.506504301864;HIF1A:-0.539611259227;MYOD1:-0.554081190018;HMX1:-0.565297340351;FOXM1:-0.579499126968;ATF4:-0.583591454598;PAX2:-0.591745028035;POU5F1:-0.646516914516;RORA:-0.669230018112;SOX2:-0.670507638087;SMAD1..7,9:-0.684117834358;CDX1,2,4:-0.688434241691;SOX{8,9,10}:-0.704340908181;SNAI1..3:-0.718025762546;BREu{core}:-0.721800631537;LMO2:-0.722437205614;JUN:-0.73002908641;OCT4_SOX2{dimer}:-0.746520950846;IKZF2:-0.809617697064;NR6A1:-0.819268153267;ZEB1:-0.831832727761;ATF2:-0.841870371206;NR5A1,2:-0.880988124991;POU2F1..3:-0.912024020943;VSX1,2:-0.929505211375;RXRA_VDR{dimer}:-0.987050381308;EP300:-1.42890335333 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11237-116D4;search_select_hide=table117:FF:11237-116D4 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Fibroblast - Gingival, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10866 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10866
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10866
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.891 |
| 10 | 10 | 0.197 |
| 100 | 100 | 0.964 |
| 101 | 101 | 0.773 |
| 102 | 102 | 0.362 |
| 103 | 103 | 0.889 |
| 104 | 104 | 0.75 |
| 105 | 105 | 0.79 |
| 106 | 106 | 0.0564 |
| 107 | 107 | 0.886 |
| 108 | 108 | 0.974 |
| 109 | 109 | 0.636 |
| 11 | 11 | 0.879 |
| 110 | 110 | 0.0892 |
| 111 | 111 | 0.643 |
| 112 | 112 | 0.263 |
| 113 | 113 | 7.45984e-4 |
| 114 | 114 | 0.458 |
| 115 | 115 | 0.47 |
| 116 | 116 | 0.468 |
| 117 | 117 | 0.018 |
| 118 | 118 | 0.927 |
| 119 | 119 | 0.774 |
| 12 | 12 | 0.44 |
| 120 | 120 | 0.885 |
| 121 | 121 | 0.525 |
| 122 | 122 | 0.0111 |
| 123 | 123 | 0.86 |
| 124 | 124 | 0.762 |
| 125 | 125 | 0.808 |
| 126 | 126 | 0.436 |
| 127 | 127 | 0.881 |
| 128 | 128 | 0.923 |
| 129 | 129 | 0.498 |
| 13 | 13 | 0.14 |
| 130 | 130 | 0.124 |
| 131 | 131 | 0.705 |
| 132 | 132 | 0.43 |
| 133 | 133 | 0.887 |
| 134 | 134 | 0.217 |
| 135 | 135 | 0.0315 |
| 136 | 136 | 0.729 |
| 137 | 137 | 0.194 |
| 138 | 138 | 0.592 |
| 139 | 139 | 0.0406 |
| 14 | 14 | 0.366 |
| 140 | 140 | 0.982 |
| 141 | 141 | 0.0684 |
| 142 | 142 | 0.15 |
| 143 | 143 | 0.402 |
| 144 | 144 | 0.187 |
| 145 | 145 | 0.186 |
| 146 | 146 | 0.189 |
| 147 | 147 | 0.041 |
| 148 | 148 | 0.772 |
| 149 | 149 | 0.707 |
| 15 | 15 | 0.348 |
| 150 | 150 | 0.785 |
| 151 | 151 | 0.699 |
| 152 | 152 | 0.562 |
| 153 | 153 | 0.031 |
| 154 | 154 | 0.706 |
| 155 | 155 | 0.0326 |
| 156 | 156 | 0.759 |
| 157 | 157 | 0.222 |
| 158 | 158 | 1.9784e-4 |
| 159 | 159 | 0.0497 |
| 16 | 16 | 0.818 |
| 160 | 160 | 0.967 |
| 161 | 161 | 0.567 |
| 162 | 162 | 0.702 |
| 163 | 163 | 0.612 |
| 164 | 164 | 0.199 |
| 165 | 165 | 0.541 |
| 166 | 166 | 0.98 |
| 167 | 167 | 0.824 |
| 168 | 168 | 0.871 |
| 169 | 169 | 0.0644 |
| 17 | 17 | 0.915 |
| 18 | 18 | 0.852 |
| 19 | 19 | 0.0356 |
| 2 | 2 | 0.69 |
| 20 | 20 | 0.688 |
| 21 | 21 | 0.0277 |
| 22 | 22 | 0.305 |
| 23 | 23 | 0.754 |
| 24 | 24 | 0.47 |
| 25 | 25 | 0.116 |
| 26 | 26 | 0.793 |
| 27 | 27 | 0.44 |
| 28 | 28 | 0.471 |
| 29 | 29 | 0.816 |
| 3 | 3 | 0.308 |
| 30 | 30 | 0.773 |
| 31 | 31 | 0.847 |
| 32 | 32 | 0.0648 |
| 33 | 33 | 0.583 |
| 34 | 34 | 0.309 |
| 35 | 35 | 0.227 |
| 36 | 36 | 0.0932 |
| 37 | 37 | 0.144 |
| 38 | 38 | 0.795 |
| 39 | 39 | 0.603 |
| 4 | 4 | 0.0421 |
| 40 | 40 | 0.0669 |
| 41 | 41 | 0.0887 |
| 42 | 42 | 0.25 |
| 43 | 43 | 0.923 |
| 44 | 44 | 0.034 |
| 45 | 45 | 0.797 |
| 46 | 46 | 0.714 |
| 47 | 47 | 0.439 |
| 48 | 48 | 0.991 |
| 49 | 49 | 0.988 |
| 5 | 5 | 0.738 |
| 50 | 50 | 0.0981 |
| 51 | 51 | 0.896 |
| 52 | 52 | 0.592 |
| 53 | 53 | 0.42 |
| 54 | 54 | 0.714 |
| 55 | 55 | 0.0333 |
| 56 | 56 | 0.985 |
| 57 | 57 | 0.209 |
| 58 | 58 | 0.285 |
| 59 | 59 | 0.731 |
| 6 | 6 | 0.443 |
| 60 | 60 | 0.0661 |
| 61 | 61 | 0.46 |
| 62 | 62 | 0.394 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.35 |
| 65 | 65 | 0.415 |
| 66 | 66 | 0.395 |
| 67 | 67 | 0.897 |
| 68 | 68 | 0.865 |
| 69 | 69 | 0.628 |
| 7 | 7 | 0.197 |
| 70 | 70 | 0.635 |
| 71 | 71 | 0.798 |
| 72 | 72 | 0.994 |
| 73 | 73 | 0.431 |
| 74 | 74 | 0.0595 |
| 75 | 75 | 0.868 |
| 76 | 76 | 0.25 |
| 77 | 77 | 0.176 |
| 78 | 78 | 0.277 |
| 79 | 79 | 0.373 |
| 8 | 8 | 0.547 |
| 80 | 80 | 0.13 |
| 81 | 81 | 0.776 |
| 82 | 82 | 0.244 |
| 83 | 83 | 0.488 |
| 84 | 84 | 0.344 |
| 85 | 85 | 0.252 |
| 86 | 86 | 0.829 |
| 87 | 87 | 0.0755 |
| 88 | 88 | 0.551 |
| 89 | 89 | 0.611 |
| 9 | 9 | 0.8 |
| 90 | 90 | 0.552 |
| 91 | 91 | 0.808 |
| 92 | 92 | 0.274 |
| 93 | 93 | 0.733 |
| 94 | 94 | 0.147 |
| 95 | 95 | 0.421 |
| 96 | 96 | 0.711 |
| 97 | 97 | 0.714 |
| 98 | 98 | 0.64 |
| 99 | 99 | 2.60464e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10866
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
