FF:10487-107B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005221 | |||
|accession_numbers=CAGE;DRX007894;DRR008766;DRZ000191;DRZ001576;DRZ011541;DRZ012926 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102411 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLU65.CNhs11274.10487-107B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLU65.CNhs11274.10487-107B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLU65.CNhs11274.10487-107B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLU65.CNhs11274.10487-107B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/giant%2520cell%2520carcinoma%2520cell%2520line%253aLU65.CNhs11274.10487-107B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10487-107B1 | |id=FF:10487-107B1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102411 | ||
|is_obsolete= | |||
|library_id=CNhs11274 | |||
|library_id_phase_based=2:CNhs11274 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10487 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10487 | |||
|name=giant cell carcinoma cell line:LU65 | |name=giant cell carcinoma cell line:LU65 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11274,LSID758,release008,COMPLETED | |profile_hcage=CNhs11274,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0372985810597061,0,-0.121369259966211,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.0584468268118252,0.0584468268118252,0,0.00266986187887522,0,0,0,0,0,-0.0395110694562323,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.197616611146092,0,0.0234296775364863,0,0,0,0,0,0,0,0,0.0307613866812236,0,0,0,0,0,-0.0731226510913368,0,0.0129604543455111,0,0,0.0126091883750193,0,0,0,0,0,0,0,0,0.155992872227303,0,0,0,0,0,0,0,0,0.0604987533971402,0,0,0,0,0,-0.0236669034520116,-0.395067308459019,0,0,0,-0.0912566572050288,-0.126997581495898,0.0292234134059126,0,0.0292234134059126,0,0.0119174643504098,-0.109253787394982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0804311477642364,0.0584468268118252,0,0,0,0.118007710267707,0.0584468268118252,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0119174643504098,0,0,0.109952815588116,0.0584468268118252,0,0,0,0.109952815588116,0,0,0,0.0857518528248081,0.098808305573046,0.0984416626762291,0.127007363236658,0,0,-0.016911206365717,0,0,0,0,0.0584468268118252,0,0.0584468268118252,0.0584468268118252,0,0.444408014475673,0,0.0595402639988013,0,0,0,0,0.0292234134059126,-0.305472230898407,0,0.00627451903543205,0.041608554510748,0,0,0,0,-0.270240669334324,0,-0.0624326569819154,-0.0827201683234173,-0.221611588102807,-0.683559826115035,0.00273433003064322,0,0,0,-0.615829979903951,0.682901814885896,0,0,-0.0925564383459614,-0.122902791748834,0,0,-0.391044581551635,0,-0.175326270189404,-0.248868050382253,0,0.162648697835142,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.0604987533971402,0,0.0584468268118252,0.27052250576013,0,-0.488152139279221,0,-0.0412187635222303,0.437892061574623,0.154049900912238,-0.0643610712713742,0.126102993958291,-0.0343874855502017,-0.302389727009913,-0.256891853650817,-0.526826361764569,0.118937054873876,-0.147401849371139,-0.189981719549847,0,-0.395067308459019,-0.483425965791697,0,-0.105822813058254,-0.0405695499953094,-0.48246472732884,-0.654097373761413,0,0,0,-0.655190971649313,0,-0.019302014444518,-0.292498103330681,-0.066539911325994,-0.421087418815521,-0.263946030256091,-0.21978464135556,-0.026456826425505,0.0154438793373876,0.0221053405765215,-0.0608574642141036,-0.366595917109641,-0.0308079419464118,0,-0.163111465354561,-0.0235312103987276,-0.349963068412935,-0.418209562032587,-0.0160387381568007,-0.248379838832012,-0.0683442610773682,0,-0.0260703540066296,-0.0620137042315636,0,0,-0.0596219607132121,0,0,0,0,0,-0.168863255665074,-0.268969637270036,0.0027420614234239,0,-0.115683608735031,-0.0187689766152747,-0.0473860626923956,0,0.351777612194495,-0.0461778893835026,0,-0.136640932368933,-6.06198833119076e-05,0.110853566697483,0.267650735593969,-0.185361827518623,-0.312441989803621,0,0.0294834571392998,-0.510764040604234,-0.0912566572050288,-0.553342241811258,0,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,-0.198561428523759,-0.266127067485071,0,-0.441303245543392,0,-0.123302310701885,0,-0.821519303855045,0.0643483995743225,-0.32933655899257,-0.120238104485056,-0.0339876779246108,-0.325434407933856,-0.517608432013844,0,-0.0367867501930117,0,0.0584468268118252,-0.0404142677465231,-0.0214208757085793,-0.211650427864589,-0.109766043273282,0.0554908994259391,-0.217552276961419,0,0,0.01778393230016,0.244065755708728,0.0584468268118252,-0.0123944907268979,0.289227719333733,0.155739349719736,-0.115971073434934,0.0584468268118252,0,0.10324344296554,0,0,0.070347026985973,0,-0.509830508370517,-0.0973334692594529,-0.101730650582308,-0.108622809454255,0,0,0.183537394404708,0,-0.31290534439567,0,0.109952815588116,0.230011273116204,0,0,0.117798811489484,0,0,0,0,0,0,0,0,-0.00614312025853661,0.124167597534444,0.294240011478506,0,0.31031313505199,0,0,0,0,0.0584468268118252,-0.105453780625344,0,0,-1.28948417549736,0,-0.0645705888645951,0,0,0,0,0.0871232607688404,-0.0932837465066075,0,0.103734916481337,0,0.0292234134059126,0,0,-0.0276941629773862,0,0,0,0.0292234134059126,0.000716369758161195,-0.165716309139111,0,0,0,-0.218507574789965,0.0584468268118252,0,0,0,0.0287174774730312,0,0,-0.152388379913264,0,0.153627957410471,-0.0815818795468414,0,-0.230947238775603,-0.427332535599072,0.219867684059158,0,0.235597622978969,-0.105354259562585,0,0.0205926924901036,0.387263844792018,0,0,-0.0209247759461169,0,0,0,0,0.332930728110373,0,-0.214314512399756,0.158803971654589,0,0,0,0,0,0,0.155992872227303,0,0,0,-0.0554646251849926,-0.0337772298466852,0,0,0,0,0,0,0,0.074702282494143,0.184540722062467,0,0,0,0,0,0.155992872227303,0,0,0.230447096473734,0,0,0,0,0,0.0129604543455111,0,0,0,0,-0.564807121153884,0,0,-0.121369259966211,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376480949284934,-0.0262836152460801,0,0,0,0,0,0,0,-0.216386471394265,0,0,0,0,-0.055437546897152,0,0,0,0.00515643079895979,0,0.0372985810597061,0,0,0,0,0,0.0584468268118252,0.0292234134059126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.55854162447601,0,-0.353363732923849,-0.087821530527326,0,0,-0.00348228010083154,0,0,0,0,0,0,0.0236359837655311,0,0,0,0,0,0,0,0.0292234134059126,0,0,0,0,0.0292234134059126,0,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0.131607320250098,0,0,0,0,0,0,0,-0.0395110694562323,0,0,0.294696673763791,0,0,0,0,0.155094398976654,0,-0.136553508995552,-0.165421588333663,-0.151748771908231,0,0,0,-0.054385572482455,0,0,-0.0611724910410976,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00266986187887522,0,0,0,0,0,0,0,0,0,0,0,0,0.277727784479944,0,0,0,0,0,0,0,0,0,0,0,0,0.537684577118644,0,0.155992872227303,0.128031718978959,0,0,0,0,0,0,-0.00478794986950393,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.222862809037344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0584468268118252,0,0,0,0,0,0,0,-0.10258220362808,0,0,0,0,0,0,0,0,0.19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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=52.6675 | |rna_weight_ug=52.6675 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1967 | |sample_cell_catalog=RCB1967 | ||
|sample_cell_line=LU65 | |sample_cell_line=LU65 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.03109196069428e-248!GO:0043231;intracellular membrane-bound organelle;1.11348127836761e-209!GO:0043227;membrane-bound organelle;2.18163935341648e-209!GO:0043226;organelle;3.86320616819639e-205!GO:0043229;intracellular organelle;8.43599185953852e-205!GO:0005737;cytoplasm;1.79074409961799e-176!GO:0044422;organelle part;6.8921677623044e-153!GO:0044446;intracellular organelle part;1.1793202959377e-151!GO:0044444;cytoplasmic part;9.20233079339073e-124!GO:0032991;macromolecular complex;4.81552402480779e-116!GO:0030529;ribonucleoprotein complex;1.0436453326348e-114!GO:0044237;cellular metabolic process;6.21104623193564e-105!GO:0044238;primary metabolic process;1.80104889371633e-101!GO:0044428;nuclear part;3.10001466880937e-101!GO:0043233;organelle lumen;6.97993225806406e-96!GO:0031974;membrane-enclosed lumen;6.97993225806406e-96!GO:0003723;RNA binding;7.98740760556396e-96!GO:0043170;macromolecule metabolic process;1.39509506237246e-94!GO:0005634;nucleus;1.87108652594008e-92!GO:0005739;mitochondrion;1.25976043106403e-84!GO:0006396;RNA processing;5.25917376174793e-78!GO:0005515;protein binding;1.23006717508348e-69!GO:0006412;translation;1.7069906573202e-67!GO:0005840;ribosome;4.87004328705534e-67!GO:0031981;nuclear lumen;1.31255669414613e-61!GO:0003735;structural constituent of ribosome;7.906023001527e-58!GO:0010467;gene expression;1.01752231190157e-57!GO:0043283;biopolymer metabolic process;1.25140297591934e-55!GO:0044429;mitochondrial part;1.09402230956634e-53!GO:0043234;protein complex;4.39535006253715e-53!GO:0019538;protein metabolic process;7.78824117312622e-52!GO:0016071;mRNA metabolic process;1.55816200080582e-51!GO:0031090;organelle membrane;1.56814535563222e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.93231952377679e-51!GO:0044249;cellular biosynthetic process;7.53180039711338e-51!GO:0031967;organelle envelope;2.48900934893307e-50!GO:0031975;envelope;6.45648454378282e-50!GO:0008380;RNA splicing;2.80429034893182e-48!GO:0009058;biosynthetic process;1.668949647266e-47!GO:0009059;macromolecule biosynthetic process;2.32744321949995e-47!GO:0033279;ribosomal subunit;6.25611823214797e-47!GO:0015031;protein transport;9.50411287422455e-47!GO:0044267;cellular protein metabolic process;1.11405783476763e-46!GO:0044260;cellular macromolecule metabolic process;1.16050391106695e-46!GO:0033036;macromolecule localization;1.21481263657504e-46!GO:0006397;mRNA processing;7.12240379833477e-46!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.39070800042903e-46!GO:0016043;cellular component organization and biogenesis;5.98312051093137e-43!GO:0045184;establishment of protein localization;9.33078258415807e-43!GO:0008104;protein localization;6.85856025161105e-42!GO:0005829;cytosol;3.74687899795044e-37!GO:0046907;intracellular transport;1.24672013774235e-36!GO:0005681;spliceosome;7.91161063041241e-36!GO:0005654;nucleoplasm;8.42483543253173e-36!GO:0006886;intracellular protein transport;6.72703468784629e-35!GO:0006259;DNA metabolic process;2.05982148646537e-34!GO:0005740;mitochondrial envelope;1.96145978677234e-33!GO:0065003;macromolecular complex assembly;1.15996560701995e-32!GO:0003676;nucleic acid binding;1.6598715655263e-31!GO:0031966;mitochondrial membrane;4.53660601792913e-31!GO:0019866;organelle inner membrane;4.93175793515386e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.32218901156668e-31!GO:0043228;non-membrane-bound organelle;5.88608026368007e-31!GO:0043232;intracellular non-membrane-bound organelle;5.88608026368007e-31!GO:0044451;nucleoplasm part;4.62761311826585e-30!GO:0005730;nucleolus;1.37960313459725e-29!GO:0005743;mitochondrial inner membrane;4.18880782185043e-29!GO:0022607;cellular component assembly;5.05249477662984e-29!GO:0006996;organelle organization and biogenesis;1.20686644075987e-28!GO:0000166;nucleotide binding;6.3417193828942e-27!GO:0016070;RNA metabolic process;1.32425150241853e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.02731484289858e-25!GO:0016462;pyrophosphatase activity;7.90746194619994e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;9.20974975428748e-25!GO:0031980;mitochondrial lumen;1.26763709287124e-24!GO:0005759;mitochondrial matrix;1.26763709287124e-24!GO:0015934;large ribosomal subunit;1.67834855922311e-24!GO:0017111;nucleoside-triphosphatase activity;1.6990500848777e-24!GO:0042254;ribosome biogenesis and assembly;2.03499505930014e-24!GO:0044445;cytosolic part;2.40810542866055e-24!GO:0006119;oxidative phosphorylation;9.13602507511778e-24!GO:0015935;small ribosomal subunit;1.52006953437227e-23!GO:0006974;response to DNA damage stimulus;2.8629554574852e-23!GO:0016874;ligase activity;4.34293051962033e-23!GO:0006512;ubiquitin cycle;3.51690870012703e-22!GO:0022618;protein-RNA complex assembly;4.24744501196045e-22!GO:0044455;mitochondrial membrane part;5.95962745188203e-22!GO:0006457;protein folding;8.61563524892404e-22!GO:0051649;establishment of cellular localization;1.40866903263354e-21!GO:0051641;cellular localization;2.44548141271579e-21!GO:0007049;cell cycle;4.41727536007157e-21!GO:0044265;cellular macromolecule catabolic process;1.3923905526772e-20!GO:0008135;translation factor activity, nucleic acid binding;2.10447803562649e-20!GO:0012505;endomembrane system;1.23080167532329e-19!GO:0005761;mitochondrial ribosome;1.88632788072537e-19!GO:0000313;organellar ribosome;1.88632788072537e-19!GO:0006281;DNA repair;6.43325607709294e-19!GO:0043285;biopolymer catabolic process;1.32262752138956e-18!GO:0017076;purine nucleotide binding;2.78322109854235e-18!GO:0032553;ribonucleotide binding;3.66160682461284e-18!GO:0032555;purine ribonucleotide binding;3.66160682461284e-18!GO:0006399;tRNA metabolic process;3.86726124882349e-18!GO:0006605;protein targeting;4.29142944466715e-18!GO:0009719;response to endogenous stimulus;5.53478272700779e-18!GO:0051186;cofactor metabolic process;5.58194566315802e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;7.25422347060463e-18!GO:0044248;cellular catabolic process;8.60152328517044e-18!GO:0005746;mitochondrial respiratory chain;9.68490435123448e-18!GO:0019941;modification-dependent protein catabolic process;9.77666130680938e-18!GO:0043632;modification-dependent macromolecule catabolic process;9.77666130680938e-18!GO:0044257;cellular protein catabolic process;1.36108681792825e-17!GO:0009057;macromolecule catabolic process;1.61206383354857e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.67995184518212e-17!GO:0000375;RNA splicing, via transesterification reactions;1.67995184518212e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.67995184518212e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.95123358331665e-17!GO:0005635;nuclear envelope;2.92180916379382e-17!GO:0031965;nuclear membrane;8.35282973379454e-17!GO:0006260;DNA replication;8.99953220522957e-17!GO:0006364;rRNA processing;1.37716252869718e-16!GO:0016072;rRNA metabolic process;1.77551462638793e-16!GO:0044453;nuclear membrane part;2.38894408163982e-16!GO:0008134;transcription factor binding;3.27428119071062e-16!GO:0016887;ATPase activity;4.3517820571553e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.44611185244034e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.60778659486827e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.14751347456149e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.94846480898162e-15!GO:0003954;NADH dehydrogenase activity;1.94846480898162e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.94846480898162e-15!GO:0003743;translation initiation factor activity;2.86931435629363e-15!GO:0042623;ATPase activity, coupled;3.13575800036828e-15!GO:0051082;unfolded protein binding;3.41695633422039e-15!GO:0005643;nuclear pore;3.44757092442903e-15!GO:0006732;coenzyme metabolic process;3.47674555477588e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.539442353381e-15!GO:0005783;endoplasmic reticulum;4.13117185498566e-15!GO:0005524;ATP binding;7.33986269254242e-15!GO:0030163;protein catabolic process;1.30548900155851e-14!GO:0032559;adenyl ribonucleotide binding;1.43823750951158e-14!GO:0030554;adenyl nucleotide binding;1.53474276348086e-14!GO:0012501;programmed cell death;2.78266671954201e-14!GO:0050657;nucleic acid transport;2.78266671954201e-14!GO:0051236;establishment of RNA localization;2.78266671954201e-14!GO:0050658;RNA transport;2.78266671954201e-14!GO:0006403;RNA localization;2.94649371878958e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.09743868629309e-14!GO:0042773;ATP synthesis coupled electron transport;3.09743868629309e-14!GO:0016604;nuclear body;3.58014448383155e-14!GO:0006915;apoptosis;5.43341259920882e-14!GO:0022402;cell cycle process;6.18165565461885e-14!GO:0044432;endoplasmic reticulum part;6.77707627789765e-14!GO:0006913;nucleocytoplasmic transport;7.27598823806575e-14!GO:0004386;helicase activity;8.66651458000511e-14!GO:0006413;translational initiation;9.82284876982887e-14!GO:0048193;Golgi vesicle transport;1.0371155657118e-13!GO:0065002;intracellular protein transport across a membrane;1.18007589849555e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.18007589849555e-13!GO:0045271;respiratory chain complex I;1.18007589849555e-13!GO:0005747;mitochondrial respiratory chain complex I;1.18007589849555e-13!GO:0051169;nuclear transport;1.36179597228494e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.33838614159667e-13!GO:0043412;biopolymer modification;2.42511602602759e-13!GO:0048770;pigment granule;3.08463806356127e-13!GO:0042470;melanosome;3.08463806356127e-13!GO:0008219;cell death;6.14216177434749e-13!GO:0016265;death;6.14216177434749e-13!GO:0006366;transcription from RNA polymerase II promoter;1.16992277877361e-12!GO:0046930;pore complex;1.1884775951539e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.23829785361494e-12!GO:0051028;mRNA transport;4.21440812181804e-12!GO:0006446;regulation of translational initiation;5.09036664968289e-12!GO:0008026;ATP-dependent helicase activity;6.39549429057426e-12!GO:0016607;nuclear speck;8.41228774567545e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.20801372501984e-11!GO:0005694;chromosome;1.42223751652024e-11!GO:0000278;mitotic cell cycle;1.52862786673513e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.73946348368693e-11!GO:0006464;protein modification process;5.16480098757315e-11!GO:0030532;small nuclear ribonucleoprotein complex;8.69422837690022e-11!GO:0017038;protein import;9.82772059452444e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.03051907859696e-10!GO:0005789;endoplasmic reticulum membrane;1.09498351079234e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.17926962969462e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.17926962969462e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.17926962969462e-10!GO:0016779;nucleotidyltransferase activity;1.70436289952041e-10!GO:0051188;cofactor biosynthetic process;1.70436289952041e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.85100745916854e-10!GO:0007005;mitochondrion organization and biogenesis;2.51201923758057e-10!GO:0051726;regulation of cell cycle;2.62399350569934e-10!GO:0051276;chromosome organization and biogenesis;2.68227978846426e-10!GO:0009056;catabolic process;2.81637449961599e-10!GO:0043038;amino acid activation;2.9578921377268e-10!GO:0006418;tRNA aminoacylation for protein translation;2.9578921377268e-10!GO:0043039;tRNA aminoacylation;2.9578921377268e-10!GO:0000074;regulation of progression through cell cycle;3.11632662207749e-10!GO:0008565;protein transporter activity;3.25210284567933e-10!GO:0008639;small protein conjugating enzyme activity;3.42914826383845e-10!GO:0006163;purine nucleotide metabolic process;4.24430296746509e-10!GO:0009259;ribonucleotide metabolic process;4.56151981677131e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.57630070003031e-10!GO:0003712;transcription cofactor activity;5.2927291369381e-10!GO:0005794;Golgi apparatus;6.4690850309983e-10!GO:0006461;protein complex assembly;7.14800601566575e-10!GO:0019787;small conjugating protein ligase activity;8.15336559826874e-10!GO:0016787;hydrolase activity;8.67601195949059e-10!GO:0009055;electron carrier activity;9.54200302844403e-10!GO:0004842;ubiquitin-protein ligase activity;9.98608317774367e-10!GO:0006261;DNA-dependent DNA replication;1.26815566857857e-09!GO:0009060;aerobic respiration;1.38662270351602e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.53942071830054e-09!GO:0043687;post-translational protein modification;1.80942660767946e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.28863122237123e-09!GO:0006164;purine nucleotide biosynthetic process;2.4993240404324e-09!GO:0008033;tRNA processing;3.23307067326136e-09!GO:0009108;coenzyme biosynthetic process;3.23307067326136e-09!GO:0044427;chromosomal part;3.53924391007157e-09!GO:0006323;DNA packaging;5.54038724607491e-09!GO:0005667;transcription factor complex;5.62195593047039e-09!GO:0003899;DNA-directed RNA polymerase activity;5.75092300499576e-09!GO:0009260;ribonucleotide biosynthetic process;6.27200101352601e-09!GO:0015986;ATP synthesis coupled proton transport;7.26797074879293e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.26797074879293e-09!GO:0009150;purine ribonucleotide metabolic process;7.5580420112502e-09!GO:0016192;vesicle-mediated transport;1.05573521564726e-08!GO:0016881;acid-amino acid ligase activity;1.26530423541865e-08!GO:0045333;cellular respiration;1.28032745453744e-08!GO:0043566;structure-specific DNA binding;1.47242296978672e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.49524887844238e-08!GO:0009141;nucleoside triphosphate metabolic process;1.85514603026843e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.55434394738378e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.55434394738378e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.459078880409e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.459078880409e-08!GO:0051246;regulation of protein metabolic process;3.55516277713242e-08!GO:0046034;ATP metabolic process;4.11531781216168e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.60967665136778e-08!GO:0005768;endosome;4.7002058492355e-08!GO:0032446;protein modification by small protein conjugation;4.85872828988734e-08!GO:0043067;regulation of programmed cell death;5.35534238475291e-08!GO:0042981;regulation of apoptosis;5.86576385313632e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.86576385313632e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.86576385313632e-08!GO:0006754;ATP biosynthetic process;6.49453478734898e-08!GO:0006753;nucleoside phosphate metabolic process;6.49453478734898e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.72487028009986e-08!GO:0019829;cation-transporting ATPase activity;7.65691707833258e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.11205304985042e-08!GO:0016568;chromatin modification;8.43619919343612e-08!GO:0022403;cell cycle phase;8.84179289010837e-08!GO:0016567;protein ubiquitination;8.98239127012609e-08!GO:0000245;spliceosome assembly;1.26959117044581e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.27092567906793e-07!GO:0051170;nuclear import;1.37530049383723e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.49220906879107e-07!GO:0006752;group transfer coenzyme metabolic process;1.72883237989227e-07!GO:0044452;nucleolar part;2.00534754946158e-07!GO:0000087;M phase of mitotic cell cycle;2.42423931998951e-07!GO:0003697;single-stranded DNA binding;2.60778084574245e-07!GO:0030120;vesicle coat;2.79652397402797e-07!GO:0030662;coated vesicle membrane;2.79652397402797e-07!GO:0006099;tricarboxylic acid cycle;3.18234159525588e-07!GO:0046356;acetyl-CoA catabolic process;3.18234159525588e-07!GO:0006084;acetyl-CoA metabolic process;3.72616239176664e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.02231818582829e-07!GO:0006606;protein import into nucleus;4.28534603903543e-07!GO:0007067;mitosis;5.32732183140876e-07!GO:0048475;coated membrane;5.72527984144546e-07!GO:0030117;membrane coat;5.72527984144546e-07!GO:0016740;transferase activity;6.24090677896821e-07!GO:0003724;RNA helicase activity;6.54466117358112e-07!GO:0005762;mitochondrial large ribosomal subunit;7.00148255751997e-07!GO:0000315;organellar large ribosomal subunit;7.00148255751997e-07!GO:0016563;transcription activator activity;7.20353073033762e-07!GO:0045259;proton-transporting ATP synthase complex;7.20353073033762e-07!GO:0050794;regulation of cellular process;8.33122905759451e-07!GO:0000314;organellar small ribosomal subunit;1.08382243193358e-06!GO:0005763;mitochondrial small ribosomal subunit;1.08382243193358e-06!GO:0044440;endosomal part;1.08382243193358e-06!GO:0010008;endosome membrane;1.08382243193358e-06!GO:0005793;ER-Golgi intermediate compartment;1.49170877749111e-06!GO:0003713;transcription coactivator activity;1.5160040647008e-06!GO:0043069;negative regulation of programmed cell death;1.5160040647008e-06!GO:0065004;protein-DNA complex assembly;2.1427106481913e-06!GO:0043623;cellular protein complex assembly;2.22243015768343e-06!GO:0048523;negative regulation of cellular process;2.35572067652404e-06!GO:0009117;nucleotide metabolic process;2.48460997789792e-06!GO:0043066;negative regulation of apoptosis;3.34238459485303e-06!GO:0016741;transferase activity, transferring one-carbon groups;3.76197619835724e-06!GO:0009109;coenzyme catabolic process;3.92148889467665e-06!GO:0005657;replication fork;4.15401086658866e-06!GO:0051187;cofactor catabolic process;4.26465812476073e-06!GO:0008168;methyltransferase activity;4.4050071295019e-06!GO:0051168;nuclear export;4.60591891273725e-06!GO:0000151;ubiquitin ligase complex;5.46499472164484e-06!GO:0003924;GTPase activity;6.24531831320877e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.74598022699521e-06!GO:0006613;cotranslational protein targeting to membrane;6.86837387535493e-06!GO:0051301;cell division;7.04455118258694e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.06141503738284e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.33070934285244e-06!GO:0043021;ribonucleoprotein binding;9.08340583421176e-06!GO:0005770;late endosome;9.55246838775085e-06!GO:0006352;transcription initiation;1.18911272916722e-05!GO:0006091;generation of precursor metabolites and energy;1.19180457302972e-05!GO:0000785;chromatin;1.23024278652996e-05!GO:0000049;tRNA binding;1.29010336131236e-05!GO:0003690;double-stranded DNA binding;1.37995882580788e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.504012575252e-05!GO:0045786;negative regulation of progression through cell cycle;1.61518560012927e-05!GO:0005525;GTP binding;1.61700326693275e-05!GO:0051427;hormone receptor binding;1.71317739214619e-05!GO:0006916;anti-apoptosis;2.10931355369583e-05!GO:0006402;mRNA catabolic process;2.1104989847733e-05!GO:0016853;isomerase activity;2.14122983811005e-05!GO:0000279;M phase;2.3108307940835e-05!GO:0006626;protein targeting to mitochondrion;2.66888025645852e-05!GO:0004298;threonine endopeptidase activity;3.32108129752144e-05!GO:0016363;nuclear matrix;3.55095470602695e-05!GO:0035257;nuclear hormone receptor binding;3.59227308451791e-05!GO:0048519;negative regulation of biological process;3.59227308451791e-05!GO:0051329;interphase of mitotic cell cycle;3.7130987870541e-05!GO:0045454;cell redox homeostasis;3.77652200227155e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.77652200227155e-05!GO:0005798;Golgi-associated vesicle;3.91815675807656e-05!GO:0030880;RNA polymerase complex;3.9259216565009e-05!GO:0006401;RNA catabolic process;4.03632291514189e-05!GO:0003729;mRNA binding;4.57886418396318e-05!GO:0006414;translational elongation;4.72795281757009e-05!GO:0019899;enzyme binding;4.85238929003433e-05!GO:0051325;interphase;5.38245188013362e-05!GO:0008186;RNA-dependent ATPase activity;5.59487121499439e-05!GO:0016491;oxidoreductase activity;6.8285601372538e-05!GO:0006333;chromatin assembly or disassembly;6.9032975286328e-05!GO:0006950;response to stress;7.30567648075049e-05!GO:0008654;phospholipid biosynthetic process;7.39355733677986e-05!GO:0043681;protein import into mitochondrion;8.86743055234238e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.27048924047665e-05!GO:0051052;regulation of DNA metabolic process;9.97865626633849e-05!GO:0006612;protein targeting to membrane;0.000102850267919189!GO:0019222;regulation of metabolic process;0.000103804233436332!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000111048867626887!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000111730860852479!GO:0000428;DNA-directed RNA polymerase complex;0.000111730860852479!GO:0004527;exonuclease activity;0.000130815695558821!GO:0006302;double-strand break repair;0.000132759300818562!GO:0003711;transcription elongation regulator activity;0.000133327988679818!GO:0006383;transcription from RNA polymerase III promoter;0.000140704305301531!GO:0006839;mitochondrial transport;0.000141943345848593!GO:0016251;general RNA polymerase II transcription factor activity;0.000145116679837205!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000146128432435344!GO:0032561;guanyl ribonucleotide binding;0.000170327477304555!GO:0019001;guanyl nucleotide binding;0.000170327477304555!GO:0004004;ATP-dependent RNA helicase activity;0.000173701514134532!GO:0004518;nuclease activity;0.00018087657956193!GO:0051789;response to protein stimulus;0.000195796004289136!GO:0006986;response to unfolded protein;0.000195796004289136!GO:0008094;DNA-dependent ATPase activity;0.000209964409343057!GO:0031324;negative regulation of cellular metabolic process;0.000223532789209622!GO:0005684;U2-dependent spliceosome;0.000228416342513792!GO:0005788;endoplasmic reticulum lumen;0.000236101575239849!GO:0003746;translation elongation factor activity;0.000238298893814085!GO:0005048;signal sequence binding;0.000239720578045414!GO:0044431;Golgi apparatus part;0.000258715665407947!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000261619340767662!GO:0046483;heterocycle metabolic process;0.000262762004770376!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000280972842959566!GO:0006793;phosphorus metabolic process;0.000288606178342795!GO:0006796;phosphate metabolic process;0.000288606178342795!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000292590461923221!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000315134475679759!GO:0015399;primary active transmembrane transporter activity;0.000315134475679759!GO:0000059;protein import into nucleus, docking;0.000330249281560159!GO:0005813;centrosome;0.000331853987169255!GO:0019867;outer membrane;0.000332836997170913!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000361525158129384!GO:0031968;organelle outer membrane;0.000379138322587903!GO:0005769;early endosome;0.000418162074442989!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000424895894765604!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000455283218111888!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000482508503084413!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000512330669085758!GO:0006417;regulation of translation;0.000514592237703344!GO:0046489;phosphoinositide biosynthetic process;0.00051577803751446!GO:0003684;damaged DNA binding;0.00052995065722642!GO:0016859;cis-trans isomerase activity;0.000548044838466536!GO:0031072;heat shock protein binding;0.000549877175229436!GO:0007006;mitochondrial membrane organization and biogenesis;0.000633617752373394!GO:0065009;regulation of a molecular function;0.000681993767750048!GO:0006405;RNA export from nucleus;0.000686262609290964!GO:0033116;ER-Golgi intermediate compartment membrane;0.000733213110377267!GO:0000075;cell cycle checkpoint;0.000762110168451715!GO:0016564;transcription repressor activity;0.000776718018453492!GO:0005741;mitochondrial outer membrane;0.00079630079262232!GO:0051252;regulation of RNA metabolic process;0.000819179791667444!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000858356754496573!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000858356754496573!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000858356754496573!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000860581864901573!GO:0030867;rough endoplasmic reticulum membrane;0.000869506359159638!GO:0046474;glycerophospholipid biosynthetic process;0.000873025876377448!GO:0006082;organic acid metabolic process;0.000879723704572129!GO:0019843;rRNA binding;0.000890494145669579!GO:0019752;carboxylic acid metabolic process;0.000893890999131969!GO:0048500;signal recognition particle;0.000909180641437286!GO:0005815;microtubule organizing center;0.000933058584898985!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000943870025253491!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000969690492147281!GO:0006310;DNA recombination;0.000984591019356045!GO:0051920;peroxiredoxin activity;0.000988178656728278!GO:0032508;DNA duplex unwinding;0.000999065310498047!GO:0032392;DNA geometric change;0.000999065310498047!GO:0009451;RNA modification;0.00100853620521136!GO:0003678;DNA helicase activity;0.00104150653698552!GO:0003714;transcription corepressor activity;0.00107073471694486!GO:0009112;nucleobase metabolic process;0.00110225513663742!GO:0051540;metal cluster binding;0.00112253773565516!GO:0051536;iron-sulfur cluster binding;0.00112253773565516!GO:0016197;endosome transport;0.00119705535051419!GO:0008312;7S RNA binding;0.00123691989320256!GO:0015992;proton transport;0.00124946769219014!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00133440068027712!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00133440068027712!GO:0016272;prefoldin complex;0.00136480259538881!GO:0006275;regulation of DNA replication;0.00136480259538881!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00139820192365673!GO:0048522;positive regulation of cellular process;0.00140333901539997!GO:0006354;RNA elongation;0.00148535990763625!GO:0051539;4 iron, 4 sulfur cluster binding;0.00149428182178447!GO:0000096;sulfur amino acid metabolic process;0.00158706400149998!GO:0050662;coenzyme binding;0.00159148937529229!GO:0050789;regulation of biological process;0.00159148937529229!GO:0009165;nucleotide biosynthetic process;0.00166212587575126!GO:0005791;rough endoplasmic reticulum;0.00172696516022806!GO:0005773;vacuole;0.00173896475610126!GO:0000178;exosome (RNase complex);0.00174670496781708!GO:0005669;transcription factor TFIID complex;0.00176034713061784!GO:0006611;protein export from nucleus;0.00178448121610225!GO:0006520;amino acid metabolic process;0.00178802435915971!GO:0006144;purine base metabolic process;0.00196354073498739!GO:0048471;perinuclear region of cytoplasm;0.00199427533727113!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00210861292384092!GO:0045047;protein targeting to ER;0.00210861292384092!GO:0042802;identical protein binding;0.00211222043422222!GO:0009116;nucleoside metabolic process;0.00215311726794142!GO:0051087;chaperone binding;0.00217579831508651!GO:0006400;tRNA modification;0.00219742463049748!GO:0006891;intra-Golgi vesicle-mediated transport;0.00220096139947884!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00230523953007514!GO:0043596;nuclear replication fork;0.00230523953007514!GO:0009889;regulation of biosynthetic process;0.00234296880577165!GO:0009892;negative regulation of metabolic process;0.00236130760992317!GO:0045941;positive regulation of transcription;0.002432224320508!GO:0030658;transport vesicle membrane;0.00251884256056561!GO:0016310;phosphorylation;0.00256321246426951!GO:0031970;organelle envelope lumen;0.00258159364400768!GO:0006506;GPI anchor biosynthetic process;0.00259243664776452!GO:0048146;positive regulation of fibroblast proliferation;0.00265721403925393!GO:0031326;regulation of cellular biosynthetic process;0.00268872750856304!GO:0031252;leading edge;0.00269089616236126!GO:0048037;cofactor binding;0.00271610251183309!GO:0031988;membrane-bound vesicle;0.00275970821097105!GO:0008408;3'-5' exonuclease activity;0.00276513073787027!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00276729693041571!GO:0016023;cytoplasmic membrane-bound vesicle;0.00284217021443621!GO:0006818;hydrogen transport;0.00285034195528567!GO:0031323;regulation of cellular metabolic process;0.00286126321957223!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00292853289359657!GO:0005758;mitochondrial intermembrane space;0.00292853289359657!GO:0005885;Arp2/3 protein complex;0.0029873136362509!GO:0043022;ribosome binding;0.00306371148902633!GO:0008139;nuclear localization sequence binding;0.00317586569240292!GO:0043492;ATPase activity, coupled to movement of substances;0.00321338358633446!GO:0004532;exoribonuclease activity;0.00321759094559873!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00321759094559873!GO:0045893;positive regulation of transcription, DNA-dependent;0.00328078442753326!GO:0043284;biopolymer biosynthetic process;0.00329353797651793!GO:0042770;DNA damage response, signal transduction;0.00334773755917053!GO:0000139;Golgi membrane;0.00362127657614068!GO:0003702;RNA polymerase II transcription factor activity;0.00372682928431895!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00396050067082429!GO:0006505;GPI anchor metabolic process;0.00399247121685731!GO:0006268;DNA unwinding during replication;0.00405426034451037!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00411213919793095!GO:0022890;inorganic cation transmembrane transporter activity;0.00423372565576188!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00426590101698525!GO:0030118;clathrin coat;0.00440810587592681!GO:0030660;Golgi-associated vesicle membrane;0.00445237046369361!GO:0046467;membrane lipid biosynthetic process;0.00448778265960859!GO:0000339;RNA cap binding;0.00465549596774338!GO:0030132;clathrin coat of coated pit;0.00468244425302146!GO:0048144;fibroblast proliferation;0.00468244425302146!GO:0048145;regulation of fibroblast proliferation;0.00468244425302146!GO:0030663;COPI coated vesicle membrane;0.00473951032175427!GO:0030126;COPI vesicle coat;0.00473951032175427!GO:0031902;late endosome membrane;0.00485553411824776!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00485837846427939!GO:0015002;heme-copper terminal oxidase activity;0.00485837846427939!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00485837846427939!GO:0004129;cytochrome-c oxidase activity;0.00485837846427939!GO:0031982;vesicle;0.00492962443039635!GO:0008632;apoptotic program;0.00506081862982331!GO:0008637;apoptotic mitochondrial changes;0.00509360476855396!GO:0007034;vacuolar transport;0.00518437733130667!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00528297179181448!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00542894040358615!GO:0006376;mRNA splice site selection;0.0055202413263004!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0055202413263004!GO:0031124;mRNA 3'-end processing;0.0055624399590054!GO:0031410;cytoplasmic vesicle;0.0055624399590054!GO:0006497;protein amino acid lipidation;0.00574434815948481!GO:0006595;polyamine metabolic process;0.00577801686146401!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0058634408441753!GO:0006270;DNA replication initiation;0.00592412393793833!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00616372455001039!GO:0035258;steroid hormone receptor binding;0.00625970697303452!GO:0015630;microtubule cytoskeleton;0.00643561436990562!GO:0030134;ER to Golgi transport vesicle;0.00648280789203267!GO:0004576;oligosaccharyl transferase activity;0.00659246012222604!GO:0003682;chromatin binding;0.00694265722039194!GO:0000287;magnesium ion binding;0.00703590033442024!GO:0030133;transport vesicle;0.00720896918174146!GO:0008250;oligosaccharyl transferase complex;0.00739391332327675!GO:0000323;lytic vacuole;0.00741360741077462!GO:0005764;lysosome;0.00741360741077462!GO:0043488;regulation of mRNA stability;0.00752265630751616!GO:0043487;regulation of RNA stability;0.00752265630751616!GO:0016407;acetyltransferase activity;0.00764713855123556!GO:0005637;nuclear inner membrane;0.0077579147617038!GO:0006289;nucleotide-excision repair;0.0077579147617038!GO:0009303;rRNA transcription;0.00777814450803743!GO:0030176;integral to endoplasmic reticulum membrane;0.00785549889453153!GO:0048487;beta-tubulin binding;0.00789049847934299!GO:0043624;cellular protein complex disassembly;0.00828936223289623!GO:0031497;chromatin assembly;0.00844059369639665!GO:0016481;negative regulation of transcription;0.00856812839569711!GO:0005832;chaperonin-containing T-complex;0.00863477074348365!GO:0000776;kinetochore;0.00870455852754445!GO:0043601;nuclear replisome;0.00880534617319336!GO:0030894;replisome;0.00880534617319336!GO:0006350;transcription;0.00896430087903278!GO:0030503;regulation of cell redox homeostasis;0.00910369875667223!GO:0046112;nucleobase biosynthetic process;0.00912127239818053!GO:0005905;coated pit;0.0093617850063048!GO:0030384;phosphoinositide metabolic process;0.00968903890373742!GO:0051098;regulation of binding;0.00983443831177456!GO:0006650;glycerophospholipid metabolic process;0.00998528938815173!GO:0032507;maintenance of cellular protein localization;0.0100086885836409!GO:0051338;regulation of transferase activity;0.0101360458900687!GO:0016791;phosphoric monoester hydrolase activity;0.0103432475928163!GO:0030125;clathrin vesicle coat;0.0103432475928163!GO:0030665;clathrin coated vesicle membrane;0.0103432475928163!GO:0001836;release of cytochrome c from mitochondria;0.0104680072341539!GO:0005819;spindle;0.0105353613115992!GO:0016788;hydrolase activity, acting on ester bonds;0.0106403091659908!GO:0006378;mRNA polyadenylation;0.0108445465809306!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0108570928417099!GO:0006284;base-excision repair;0.010957501101216!GO:0032259;methylation;0.0115261797098105!GO:0030127;COPII vesicle coat;0.0117104011081018!GO:0012507;ER to Golgi transport vesicle membrane;0.0117104011081018!GO:0030119;AP-type membrane coat adaptor complex;0.0118203632373419!GO:0004526;ribonuclease P activity;0.0118238770252344!GO:0046128;purine ribonucleoside metabolic process;0.0118916891704833!GO:0042278;purine nucleoside metabolic process;0.0118916891704833!GO:0044262;cellular carbohydrate metabolic process;0.0123518385057188!GO:0004540;ribonuclease activity;0.0123518385057188!GO:0032984;macromolecular complex disassembly;0.0124159567385521!GO:0006892;post-Golgi vesicle-mediated transport;0.0124424144274847!GO:0050790;regulation of catalytic activity;0.0125830707874536!GO:0048468;cell development;0.0126223585216301!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0126348607851402!GO:0004549;tRNA-specific ribonuclease activity;0.012771919012555!GO:0030521;androgen receptor signaling pathway;0.0128064193854416!GO:0006334;nucleosome assembly;0.0129387516151275!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0129512247114731!GO:0010257;NADH dehydrogenase complex assembly;0.0129512247114731!GO:0033108;mitochondrial respiratory chain complex assembly;0.0129512247114731!GO:0008234;cysteine-type peptidase activity;0.0131605937443114!GO:0007264;small GTPase mediated signal transduction;0.0133854228849233!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0135540987044798!GO:0031123;RNA 3'-end processing;0.0136352416853395!GO:0042158;lipoprotein biosynthetic process;0.0136548654695778!GO:0043065;positive regulation of apoptosis;0.0137071712985172!GO:0046966;thyroid hormone receptor binding;0.0137188141224425!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0138534092469057!GO:0051101;regulation of DNA binding;0.0139530571107094!GO:0003725;double-stranded RNA binding;0.0143024037287008!GO:0001889;liver development;0.0149338289174427!GO:0032200;telomere organization and biogenesis;0.0149794032479499!GO:0000723;telomere maintenance;0.0149794032479499!GO:0008097;5S rRNA binding;0.0150315314566947!GO:0007040;lysosome organization and biogenesis;0.0150315314566947!GO:0007004;telomere maintenance via telomerase;0.0152990057883191!GO:0007243;protein kinase cascade;0.0155310967376193!GO:0006360;transcription from RNA polymerase I promoter;0.0156815350811832!GO:0006338;chromatin remodeling;0.0157930187291005!GO:0000175;3'-5'-exoribonuclease activity;0.0158308118221469!GO:0000726;non-recombinational repair;0.0158398873621633!GO:0030131;clathrin adaptor complex;0.0159804544330367!GO:0000082;G1/S transition of mitotic cell cycle;0.0166627988522471!GO:0022411;cellular component disassembly;0.0166673147410292!GO:0030137;COPI-coated vesicle;0.016762634996372!GO:0051059;NF-kappaB binding;0.0173435543244486!GO:0043068;positive regulation of programmed cell death;0.017945865622147!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0179626922780964!GO:0043549;regulation of kinase activity;0.0180200081866194!GO:0051651;maintenance of cellular localization;0.0183325472519392!GO:0005666;DNA-directed RNA polymerase III complex;0.0183632472174567!GO:0006118;electron transport;0.0183812124964102!GO:0043414;biopolymer methylation;0.0185860161282864!GO:0030433;ER-associated protein catabolic process;0.0186948153329596!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0186948153329596!GO:0006519;amino acid and derivative metabolic process;0.0190162322136956!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0191417041090009!GO:0016790;thiolester hydrolase activity;0.0193186276845757!GO:0007050;cell cycle arrest;0.0194946988927307!GO:0008173;RNA methyltransferase activity;0.0196063824166074!GO:0051287;NAD binding;0.0196063824166074!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0196351175376463!GO:0005732;small nucleolar ribonucleoprotein complex;0.0197409980513787!GO:0043241;protein complex disassembly;0.0207542258488324!GO:0019783;small conjugating protein-specific protease activity;0.020825305889122!GO:0008629;induction of apoptosis by intracellular signals;0.0208960286922537!GO:0007041;lysosomal transport;0.0213455330998262!GO:0046983;protein dimerization activity;0.0214548093759205!GO:0033673;negative regulation of kinase activity;0.0217467334813192!GO:0006469;negative regulation of protein kinase activity;0.0217467334813192!GO:0051053;negative regulation of DNA metabolic process;0.0219770011296899!GO:0046822;regulation of nucleocytoplasmic transport;0.0222896196587376!GO:0043189;H4/H2A histone acetyltransferase complex;0.0223651751341505!GO:0008022;protein C-terminus binding;0.022741035189562!GO:0031625;ubiquitin protein ligase binding;0.022741035189562!GO:0008361;regulation of cell size;0.0235431566546363!GO:0007033;vacuole organization and biogenesis;0.0237818692542502!GO:0000123;histone acetyltransferase complex;0.0240120329123714!GO:0032040;small subunit processome;0.0241635972308809!GO:0043433;negative regulation of transcription factor activity;0.024573445451822!GO:0000775;chromosome, pericentric region;0.024573445451822!GO:0051348;negative regulation of transferase activity;0.0250398980250241!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.025548178267423!GO:0018196;peptidyl-asparagine modification;0.025548178267423!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.025548178267423!GO:0045045;secretory pathway;0.0265431674647675!GO:0004843;ubiquitin-specific protease activity;0.0267107560882098!GO:0000097;sulfur amino acid biosynthetic process;0.0270203716207986!GO:0045859;regulation of protein kinase activity;0.0273143835136087!GO:0015631;tubulin binding;0.0274301345512813!GO:0035267;NuA4 histone acetyltransferase complex;0.0282544891850719!GO:0009119;ribonucleoside metabolic process;0.0282742599051231!GO:0007030;Golgi organization and biogenesis;0.0283165729446314!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0283165729446314!GO:0000228;nuclear chromosome;0.0288994652499268!GO:0006984;ER-nuclear signaling pathway;0.0290310159133448!GO:0010468;regulation of gene expression;0.0293472789780971!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0295626136265714!GO:0045039;protein import into mitochondrial inner membrane;0.0295626136265714!GO:0006740;NADPH regeneration;0.0295626136265714!GO:0006098;pentose-phosphate shunt;0.0295626136265714!GO:0006730;one-carbon compound metabolic process;0.0295626136265714!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0296329538857393!GO:0006007;glucose catabolic process;0.030114446336049!GO:0007088;regulation of mitosis;0.030491123187323!GO:0016044;membrane organization and biogenesis;0.0307980976501569!GO:0030659;cytoplasmic vesicle membrane;0.0308159434926045!GO:0000781;chromosome, telomeric region;0.0308159434926045!GO:0008320;protein transmembrane transporter activity;0.0314121963894085!GO:0004177;aminopeptidase activity;0.0316587882360772!GO:0042393;histone binding;0.0323194551914583!GO:0008538;proteasome activator activity;0.0324102144724499!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0326095637709386!GO:0031570;DNA integrity checkpoint;0.0336462514760613!GO:0030036;actin cytoskeleton organization and biogenesis;0.0338214666420222!GO:0004680;casein kinase activity;0.0344503992139519!GO:0030968;unfolded protein response;0.0344503992139519!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0346764955320102!GO:0016408;C-acyltransferase activity;0.0350192426229534!GO:0001726;ruffle;0.0351528492504478!GO:0044438;microbody part;0.035190742137574!GO:0044439;peroxisomal part;0.035190742137574!GO:0008276;protein methyltransferase activity;0.0353219258294111!GO:0006301;postreplication repair;0.0354187968177951!GO:0006596;polyamine biosynthetic process;0.0355478888661822!GO:0005869;dynactin complex;0.0360679234870651!GO:0006695;cholesterol biosynthetic process;0.0368176585111192!GO:0001558;regulation of cell growth;0.0368718417651638!GO:0016584;nucleosome positioning;0.0370208719103135!GO:0040029;regulation of gene expression, epigenetic;0.0372188059859486!GO:0006415;translational termination;0.0373364824367525!GO:0009113;purine base biosynthetic process;0.0373418421028571!GO:0004659;prenyltransferase activity;0.0375360174143351!GO:0008180;signalosome;0.0379540567864292!GO:0008156;negative regulation of DNA replication;0.0379540567864292!GO:0006979;response to oxidative stress;0.0384726550313196!GO:0022406;membrane docking;0.0384726550313196!GO:0048278;vesicle docking;0.0384726550313196!GO:0009066;aspartate family amino acid metabolic process;0.0388212605308168!GO:0016126;sterol biosynthetic process;0.0388256406466894!GO:0004722;protein serine/threonine phosphatase activity;0.0393270889270702!GO:0016049;cell growth;0.0393270889270702!GO:0017166;vinculin binding;0.0395611239682733!GO:0006607;NLS-bearing substrate import into nucleus;0.0402635939251733!GO:0008610;lipid biosynthetic process;0.0406793393895794!GO:0006390;transcription from mitochondrial promoter;0.0410713622906674!GO:0009967;positive regulation of signal transduction;0.0411836532792037!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0414157570855725!GO:0032039;integrator complex;0.0419131734229634!GO:0000209;protein polyubiquitination;0.0421595648454604!GO:0022884;macromolecule transmembrane transporter activity;0.0423428936819455!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0423428936819455!GO:0046519;sphingoid metabolic process;0.0425427572421771!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0428196489041911!GO:0044433;cytoplasmic vesicle part;0.0428196489041911!GO:0022408;negative regulation of cell-cell adhesion;0.0428196489041911!GO:0030518;steroid hormone receptor signaling pathway;0.0428196489041911!GO:0008159;positive transcription elongation factor activity;0.0428196489041911!GO:0000792;heterochromatin;0.0428779640448138!GO:0009067;aspartate family amino acid biosynthetic process;0.0430899277009628!GO:0003756;protein disulfide isomerase activity;0.0433842060848801!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0433842060848801!GO:0031903;microbody membrane;0.0435063721271723!GO:0005778;peroxisomal membrane;0.0435063721271723!GO:0051716;cellular response to stimulus;0.0435158494052434!GO:0043631;RNA polyadenylation;0.0436578884790258!GO:0004221;ubiquitin thiolesterase activity;0.0438582944949025!GO:0005774;vacuolar membrane;0.0442667982271723!GO:0006509;membrane protein ectodomain proteolysis;0.0443203101808282!GO:0033619;membrane protein proteolysis;0.0443203101808282!GO:0008652;amino acid biosynthetic process;0.0447809713393733!GO:0006406;mRNA export from nucleus;0.0448225677859079!GO:0030508;thiol-disulfide exchange intermediate activity;0.0450914907315868!GO:0007093;mitotic cell cycle checkpoint;0.0451203904240132!GO:0045185;maintenance of protein localization;0.0456733476817637!GO:0031901;early endosome membrane;0.0466518814321822!GO:0004003;ATP-dependent DNA helicase activity;0.0467971115089217!GO:0005686;snRNP U2;0.0472662673872466!GO:0008426;protein kinase C inhibitor activity;0.0473895830642018!GO:0048518;positive regulation of biological process;0.0477265897823038!GO:0000119;mediator complex;0.0477738577419283!GO:0004300;enoyl-CoA hydratase activity;0.0478402796440852!GO:0042147;retrograde transport, endosome to Golgi;0.0481135789257824!GO:0004721;phosphoprotein phosphatase activity;0.0481135789257824!GO:0004239;methionyl aminopeptidase activity;0.048152385450335!GO:0008536;Ran GTPase binding;0.0483200918758737!GO:0005663;DNA replication factor C complex;0.0485008306215857!GO:0000086;G2/M transition of mitotic cell cycle;0.0489269700622601!GO:0005784;translocon complex;0.0489732066461319!GO:0007021;tubulin folding;0.0489732066461319!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0490437721646186!GO:0015036;disulfide oxidoreductase activity;0.0499708767526239 | |||
|sample_id=10487 | |sample_id=10487 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.77218239994;ELK1,4_GABP{A,B1}:2.15853908464;bHLH_family:2.08567719562;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.7221327753;FOX{I1,J2}:1.53494180529;ZBTB16:1.49626854705;MYOD1:1.19696896282;ESRRA:1.15361401033;PPARG:1.13257344987;NKX6-1,2:1.10478403015;PITX1..3:1.07183156831;HOXA9_MEIS1:1.03720246503;NRF1:1.02437360332;AIRE:1.02393640875;HIF1A:0.985215734678;FOXQ1:0.942733240801;FOXN1:0.926909524488;VSX1,2:0.922463610676;NKX2-1,4:0.921930048422;CDX1,2,4:0.843375446486;TEF:0.83812217067;FOXD3:0.835713112234;AHR_ARNT_ARNT2:0.835471988801;ZEB1:0.800978026246;POU2F1..3:0.757148148668;CRX:0.722376672159;HES1:0.687215930996;FOXA2:0.667692933196;E2F1..5:0.657480829445;CREB1:0.652811865581;FOX{F1,F2,J1}:0.643269576778;FOS_FOS{B,L1}_JUN{B,D}:0.630111039046;CEBPA,B_DDIT3:0.621886727818;LMO2:0.610549434656;FOXP1:0.598937778021;ALX1:0.593188526294;PAX2:0.587419155512;SNAI1..3:0.578403036094;ADNP_IRX_SIX_ZHX:0.553690374011;BACH2:0.535595154192;ELF1,2,4:0.522436954688;HOX{A6,A7,B6,B7}:0.517742665887;PDX1:0.51500314082;EN1,2:0.501811816634;ATF4:0.460665005575;NR5A1,2:0.446449000019;NFIL3:0.437575645505;RBPJ:0.419145986578;CDC5L:0.417857946661;ATF5_CREB3:0.398680434265;PBX1:0.396903368242;NR6A1:0.385602902066;PAX3,7:0.379496743782;NKX2-2,8:0.365481205472;ZNF143:0.362223941847;ONECUT1,2:0.33087126682;NFE2:0.3305066147;MYB:0.311635095346;JUN:0.310022117716;YY1:0.302572297583;TOPORS:0.280807350358;STAT2,4,6:0.27485295609;POU6F1:0.254283957479;PAX8:0.225069003106;ARID5B:0.204815974716;NANOG:0.194084961087;FOSL2:0.190501957615;NR1H4:0.189086137947;CUX2:0.174196644792;POU1F1:0.165545439445;NKX3-1:0.160335681504;TLX2:0.14879569427;EVI1:0.125343871789;HLF:0.11950249041;HBP1_HMGB_SSRP1_UBTF:0.0969344032038;GATA6:0.0837230668242;LEF1_TCF7_TCF7L1,2:0.0757304324297;TAL1_TCF{3,4,12}:0.0521365357847;HNF1A:0.0489371363845;OCT4_SOX2{dimer}:0.0341107716468;HOX{A4,D4}:0.0338056236315;PAX4:0.0314401681183;ALX4:-0.00959614193772;NFKB1_REL_RELA:-0.0140837001262;NFE2L2:-0.0277818834365;BREu{core}:-0.0407273638856;SOX2:-0.0423302682219;TBX4,5:-0.0489184433266;STAT5{A,B}:-0.0490844527041;TEAD1:-0.0587613915581;RORA:-0.0597310123283;ATF6:-0.0691059131356;FOXM1:-0.0724973413282;TFDP1:-0.0752736083251;FOXL1:-0.0771169117186;NFIX:-0.100229041489;HOX{A5,B5}:-0.106099320189;GLI1..3:-0.109429974292;KLF4:-0.126781297319;LHX3,4:-0.130989826532;HNF4A_NR2F1,2:-0.138082812688;PRRX1,2:-0.145661360564;UFEwm:-0.154583128374;IKZF2:-0.161338861284;MEF2{A,B,C,D}:-0.167370658382;XBP1:-0.170805250514;HAND1,2:-0.176472127295;IKZF1:-0.196688241332;NFE2L1:-0.206209134295;TP53:-0.207450589079;ATF2:-0.210522845566;HSF1,2:-0.210942925512;DBP:-0.227312534609;ETS1,2:-0.237820867824;RFX2..5_RFXANK_RFXAP:-0.239622780494;TBP:-0.243942280592;POU3F1..4:-0.291565562013;NFY{A,B,C}:-0.296171789366;ZNF384:-0.304482577243;RUNX1..3:-0.327831240264;SOX5:-0.33077231549;NKX3-2:-0.33171872853;FOX{D1,D2}:-0.354363563132;GATA4:-0.385581560781;AR:-0.397712969322;SPI1:-0.412928803662;STAT1,3:-0.427849767159;DMAP1_NCOR{1,2}_SMARC:-0.440442349037;FOXP3:-0.476449799669;RXRA_VDR{dimer}:-0.478407863187;SPIB:-0.490572568252;MTF1:-0.498021970463;IRF7:-0.514605437405;FOXO1,3,4:-0.51568804455;IRF1,2:-0.537604287892;NKX2-3_NKX2-5:-0.539186191003;REST:-0.540322637467;MYBL2:-0.553887270554;GFI1:-0.573140631299;NHLH1,2:-0.58981596349;HMGA1,2:-0.594648218125;EP300:-0.603493898279;PRDM1:-0.606826087545;MAFB:-0.609099922106;BPTF:-0.612144356571;POU5F1:-0.62978865224;SREBF1,2:-0.637538712832;PAX6:-0.638149311384;GZF1:-0.645251422269;ESR1:-0.66187759823;MED-1{core}:-0.672709706296;SOX17:-0.681361709981;GFI1B:-0.691827748488;NR3C1:-0.708261877338;RFX1:-0.708262604366;ZFP161:-0.708393073709;T:-0.710056527154;TLX1..3_NFIC{dimer}:-0.719550459899;ZNF423:-0.78943789104;SOX{8,9,10}:-0.818343996126;RREB1:-0.910011669423;ZNF148:-0.914865163336;NANOG{mouse}:-0.937619536976;PAX1,9:-0.943600782414;TGIF1:-0.958009972125;RXR{A,B,G}:-0.983594611642;MYFfamily:-1.01168306897;EBF1:-1.01182746083;ZBTB6:-1.04208640445;SRF:-1.05458675011;ZIC1..3:-1.06636465827;PATZ1:-1.10065313861;GCM1,2:-1.16484388971;HIC1:-1.19055508991;MTE{core}:-1.21634345858;GTF2I:-1.22728776844;GTF2A1,2:-1.24762885848;TFCP2:-1.29736181585;ZNF238:-1.3082793454;TFAP2B:-1.37599638618;EGR1..3:-1.39872126832;NFATC1..3:-1.40572477032;TFAP2{A,C}:-1.43023984134;SMAD1..7,9:-1.44394512302;MAZ:-1.49387565214;PAX5:-1.55554091189;TFAP4:-1.72594254591;HMX1:-1.81400572169;XCPE1{core}:-1.82488041473;SP1:-1.83005029248;SPZ1:-1.84638972978;MZF1:-1.89815980366 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.77218239994;ELK1,4_GABP{A,B1}:2.15853908464;bHLH_family:2.08567719562;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.7221327753;FOX{I1,J2}:1.53494180529;ZBTB16:1.49626854705;MYOD1:1.19696896282;ESRRA:1.15361401033;PPARG:1.13257344987;NKX6-1,2:1.10478403015;PITX1..3:1.07183156831;HOXA9_MEIS1:1.03720246503;NRF1:1.02437360332;AIRE:1.02393640875;HIF1A:0.985215734678;FOXQ1:0.942733240801;FOXN1:0.926909524488;VSX1,2:0.922463610676;NKX2-1,4:0.921930048422;CDX1,2,4:0.843375446486;TEF:0.83812217067;FOXD3:0.835713112234;AHR_ARNT_ARNT2:0.835471988801;ZEB1:0.800978026246;POU2F1..3:0.757148148668;CRX:0.722376672159;HES1:0.687215930996;FOXA2:0.667692933196;E2F1..5:0.657480829445;CREB1:0.652811865581;FOX{F1,F2,J1}:0.643269576778;FOS_FOS{B,L1}_JUN{B,D}:0.630111039046;CEBPA,B_DDIT3:0.621886727818;LMO2:0.610549434656;FOXP1:0.598937778021;ALX1:0.593188526294;PAX2:0.587419155512;SNAI1..3:0.578403036094;ADNP_IRX_SIX_ZHX:0.553690374011;BACH2:0.535595154192;ELF1,2,4:0.522436954688;HOX{A6,A7,B6,B7}:0.517742665887;PDX1:0.51500314082;EN1,2:0.501811816634;ATF4:0.460665005575;NR5A1,2:0.446449000019;NFIL3:0.437575645505;RBPJ:0.419145986578;CDC5L:0.417857946661;ATF5_CREB3:0.398680434265;PBX1:0.396903368242;NR6A1:0.385602902066;PAX3,7:0.379496743782;NKX2-2,8:0.365481205472;ZNF143:0.362223941847;ONECUT1,2:0.33087126682;NFE2:0.3305066147;MYB:0.311635095346;JUN:0.310022117716;YY1:0.302572297583;TOPORS:0.280807350358;STAT2,4,6:0.27485295609;POU6F1:0.254283957479;PAX8:0.225069003106;ARID5B:0.204815974716;NANOG:0.194084961087;FOSL2:0.190501957615;NR1H4:0.189086137947;CUX2:0.174196644792;POU1F1:0.165545439445;NKX3-1:0.160335681504;TLX2:0.14879569427;EVI1:0.125343871789;HLF:0.11950249041;HBP1_HMGB_SSRP1_UBTF:0.0969344032038;GATA6:0.0837230668242;LEF1_TCF7_TCF7L1,2:0.0757304324297;TAL1_TCF{3,4,12}:0.0521365357847;HNF1A:0.0489371363845;OCT4_SOX2{dimer}:0.0341107716468;HOX{A4,D4}:0.0338056236315;PAX4:0.0314401681183;ALX4:-0.00959614193772;NFKB1_REL_RELA:-0.0140837001262;NFE2L2:-0.0277818834365;BREu{core}:-0.0407273638856;SOX2:-0.0423302682219;TBX4,5:-0.0489184433266;STAT5{A,B}:-0.0490844527041;TEAD1:-0.0587613915581;RORA:-0.0597310123283;ATF6:-0.0691059131356;FOXM1:-0.0724973413282;TFDP1:-0.0752736083251;FOXL1:-0.0771169117186;NFIX:-0.100229041489;HOX{A5,B5}:-0.106099320189;GLI1..3:-0.109429974292;KLF4:-0.126781297319;LHX3,4:-0.130989826532;HNF4A_NR2F1,2:-0.138082812688;PRRX1,2:-0.145661360564;UFEwm:-0.154583128374;IKZF2:-0.161338861284;MEF2{A,B,C,D}:-0.167370658382;XBP1:-0.170805250514;HAND1,2:-0.176472127295;IKZF1:-0.196688241332;NFE2L1:-0.206209134295;TP53:-0.207450589079;ATF2:-0.210522845566;HSF1,2:-0.210942925512;DBP:-0.227312534609;ETS1,2:-0.237820867824;RFX2..5_RFXANK_RFXAP:-0.239622780494;TBP:-0.243942280592;POU3F1..4:-0.291565562013;NFY{A,B,C}:-0.296171789366;ZNF384:-0.304482577243;RUNX1..3:-0.327831240264;SOX5:-0.33077231549;NKX3-2:-0.33171872853;FOX{D1,D2}:-0.354363563132;GATA4:-0.385581560781;AR:-0.397712969322;SPI1:-0.412928803662;STAT1,3:-0.427849767159;DMAP1_NCOR{1,2}_SMARC:-0.440442349037;FOXP3:-0.476449799669;RXRA_VDR{dimer}:-0.478407863187;SPIB:-0.490572568252;MTF1:-0.498021970463;IRF7:-0.514605437405;FOXO1,3,4:-0.51568804455;IRF1,2:-0.537604287892;NKX2-3_NKX2-5:-0.539186191003;REST:-0.540322637467;MYBL2:-0.553887270554;GFI1:-0.573140631299;NHLH1,2:-0.58981596349;HMGA1,2:-0.594648218125;EP300:-0.603493898279;PRDM1:-0.606826087545;MAFB:-0.609099922106;BPTF:-0.612144356571;POU5F1:-0.62978865224;SREBF1,2:-0.637538712832;PAX6:-0.638149311384;GZF1:-0.645251422269;ESR1:-0.66187759823;MED-1{core}:-0.672709706296;SOX17:-0.681361709981;GFI1B:-0.691827748488;NR3C1:-0.708261877338;RFX1:-0.708262604366;ZFP161:-0.708393073709;T:-0.710056527154;TLX1..3_NFIC{dimer}:-0.719550459899;ZNF423:-0.78943789104;SOX{8,9,10}:-0.818343996126;RREB1:-0.910011669423;ZNF148:-0.914865163336;NANOG{mouse}:-0.937619536976;PAX1,9:-0.943600782414;TGIF1:-0.958009972125;RXR{A,B,G}:-0.983594611642;MYFfamily:-1.01168306897;EBF1:-1.01182746083;ZBTB6:-1.04208640445;SRF:-1.05458675011;ZIC1..3:-1.06636465827;PATZ1:-1.10065313861;GCM1,2:-1.16484388971;HIC1:-1.19055508991;MTE{core}:-1.21634345858;GTF2I:-1.22728776844;GTF2A1,2:-1.24762885848;TFCP2:-1.29736181585;ZNF238:-1.3082793454;TFAP2B:-1.37599638618;EGR1..3:-1.39872126832;NFATC1..3:-1.40572477032;TFAP2{A,C}:-1.43023984134;SMAD1..7,9:-1.44394512302;MAZ:-1.49387565214;PAX5:-1.55554091189;TFAP4:-1.72594254591;HMX1:-1.81400572169;XCPE1{core}:-1.82488041473;SP1:-1.83005029248;SPZ1:-1.84638972978;MZF1:-1.89815980366 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10487-107B1;search_select_hide=table117:FF:10487-107B1 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | giant cell carcinoma cell line:LU65 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11274 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11274
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11274
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0155 |
| 10 | 10 | 0.0319 |
| 100 | 100 | 0.0232 |
| 101 | 101 | 0.919 |
| 102 | 102 | 0.515 |
| 103 | 103 | 0.447 |
| 104 | 104 | 0.64 |
| 105 | 105 | 0.958 |
| 106 | 106 | 0.297 |
| 107 | 107 | 0.221 |
| 108 | 108 | 0.478 |
| 109 | 109 | 0.0143 |
| 11 | 11 | 0.357 |
| 110 | 110 | 0.115 |
| 111 | 111 | 0.0251 |
| 112 | 112 | 0.488 |
| 113 | 113 | 0.144 |
| 114 | 114 | 0.0251 |
| 115 | 115 | 0.991 |
| 116 | 116 | 0.486 |
| 117 | 117 | 0.0371 |
| 118 | 118 | 0.169 |
| 119 | 119 | 0.339 |
| 12 | 12 | 0.932 |
| 120 | 120 | 0.0379 |
| 121 | 121 | 0.314 |
| 122 | 122 | 0.352 |
| 123 | 123 | 0.0349 |
| 124 | 124 | 0.56 |
| 125 | 125 | 0.88 |
| 126 | 126 | 0.694 |
| 127 | 127 | 0.744 |
| 128 | 128 | 0.0658 |
| 129 | 129 | 0.933 |
| 13 | 13 | 6.6495e-4 |
| 130 | 130 | 0.717 |
| 131 | 131 | 0.493 |
| 132 | 132 | 0.458 |
| 133 | 133 | 0.502 |
| 134 | 134 | 0.333 |
| 135 | 135 | 0.486 |
| 136 | 136 | 0.127 |
| 137 | 137 | 0.379 |
| 138 | 138 | 0.436 |
| 139 | 139 | 0.0131 |
| 14 | 14 | 0.946 |
| 140 | 140 | 0.133 |
| 141 | 141 | 0.136 |
| 142 | 142 | 0.639 |
| 143 | 143 | 0.899 |
| 144 | 144 | 0.717 |
| 145 | 145 | 0.475 |
| 146 | 146 | 0.843 |
| 147 | 147 | 0.365 |
| 148 | 148 | 0.00652 |
| 149 | 149 | 0.681 |
| 15 | 15 | 0.0765 |
| 150 | 150 | 0.967 |
| 151 | 151 | 0.688 |
| 152 | 152 | 0.0619 |
| 153 | 153 | 0.152 |
| 154 | 154 | 0.955 |
| 155 | 155 | 0.739 |
| 156 | 156 | 0.352 |
| 157 | 157 | 0.56 |
| 158 | 158 | 0.4 |
| 159 | 159 | 0.509 |
| 16 | 16 | 0.432 |
| 160 | 160 | 0.769 |
| 161 | 161 | 0.993 |
| 162 | 162 | 0.793 |
| 163 | 163 | 0.39 |
| 164 | 164 | 0.137 |
| 165 | 165 | 0.349 |
| 166 | 166 | 0.395 |
| 167 | 167 | 0.00588 |
| 168 | 168 | 0.786 |
| 169 | 169 | 0.277 |
| 17 | 17 | 0.771 |
| 18 | 18 | 0.368 |
| 19 | 19 | 0.95 |
| 2 | 2 | 0.237 |
| 20 | 20 | 0.0372 |
| 21 | 21 | 0.192 |
| 22 | 22 | 0.6 |
| 23 | 23 | 0.977 |
| 24 | 24 | 0.223 |
| 25 | 25 | 0.458 |
| 26 | 26 | 0.254 |
| 27 | 27 | 0.442 |
| 28 | 28 | 0.825 |
| 29 | 29 | 0.0619 |
| 3 | 3 | 0.097 |
| 30 | 30 | 0.14 |
| 31 | 31 | 0.579 |
| 32 | 32 | 0.345 |
| 33 | 33 | 0.0585 |
| 34 | 34 | 0.199 |
| 35 | 35 | 0.284 |
| 36 | 36 | 0.0109 |
| 37 | 37 | 0.308 |
| 38 | 38 | 0.638 |
| 39 | 39 | 0.558 |
| 4 | 4 | 0.962 |
| 40 | 40 | 0.0362 |
| 41 | 41 | 0.948 |
| 42 | 42 | 0.183 |
| 43 | 43 | 0.284 |
| 44 | 44 | 0.765 |
| 45 | 45 | 0.516 |
| 46 | 46 | 0.415 |
| 47 | 47 | 0.137 |
| 48 | 48 | 0.215 |
| 49 | 49 | 0.158 |
| 5 | 5 | 0.538 |
| 50 | 50 | 0.938 |
| 51 | 51 | 0.959 |
| 52 | 52 | 0.195 |
| 53 | 53 | 0.963 |
| 54 | 54 | 0.944 |
| 55 | 55 | 0.797 |
| 56 | 56 | 0.857 |
| 57 | 57 | 0.0652 |
| 58 | 58 | 0.264 |
| 59 | 59 | 0.946 |
| 6 | 6 | 0.549 |
| 60 | 60 | 0.819 |
| 61 | 61 | 0.316 |
| 62 | 62 | 0.255 |
| 63 | 63 | 0.182 |
| 64 | 64 | 0.367 |
| 65 | 65 | 0.865 |
| 66 | 66 | 0.166 |
| 67 | 67 | 0.522 |
| 68 | 68 | 0.0267 |
| 69 | 69 | 0.614 |
| 7 | 7 | 0.0603 |
| 70 | 70 | 0.0411 |
| 71 | 71 | 0.0184 |
| 72 | 72 | 0.558 |
| 73 | 73 | 0.695 |
| 74 | 74 | 0.648 |
| 75 | 75 | 0.0789 |
| 76 | 76 | 0.0709 |
| 77 | 77 | 0.915 |
| 78 | 78 | 0.00589 |
| 79 | 79 | 0.0787 |
| 8 | 8 | 0.262 |
| 80 | 80 | 0.185 |
| 81 | 81 | 0.6 |
| 82 | 82 | 0.712 |
| 83 | 83 | 0.517 |
| 84 | 84 | 0.377 |
| 85 | 85 | 0.447 |
| 86 | 86 | 0.756 |
| 87 | 87 | 0.636 |
| 88 | 88 | 0.799 |
| 89 | 89 | 0.589 |
| 9 | 9 | 0.289 |
| 90 | 90 | 0.393 |
| 91 | 91 | 0.261 |
| 92 | 92 | 0.656 |
| 93 | 93 | 0.487 |
| 94 | 94 | 0.487 |
| 95 | 95 | 0.23 |
| 96 | 96 | 0.355 |
| 97 | 97 | 0.995 |
| 98 | 98 | 0.0206 |
| 99 | 99 | 0.297 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11274
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102411 giant cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102411 (giant cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
